AlfalfaGEDB | MS.gene60717

M. sativa cultivar XinJiangDaYe / MS.gene60717

KEGG: K02964
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00416.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60717.t1	XP_003592049.1	100	152	0	0	1	152	1	152	1.40E-79	305.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60717.t1	P34788	92.8	152	11	0	1	152	1	152	3.3e-77	288.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60717.t1	B7FMJ8	100.0	152	0	0	1	152	1	152	1.0e-79	305.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049140	MS.gene60717	0.808402	3.15E-50	-1.69E-46
MS.gene049341	MS.gene60717	0.807643	4.57E-50	-1.69E-46
MS.gene049411	MS.gene60717	0.806712	7.20E-50	-1.69E-46
MS.gene049580	MS.gene60717	0.818676	1.73E-52	-1.69E-46
MS.gene050277	MS.gene60717	0.869926	2.15E-66	-1.69E-46
MS.gene050320	MS.gene60717	0.823178	1.59E-53	-1.69E-46
MS.gene050437	MS.gene60717	0.801542	8.57E-49	-1.69E-46
MS.gene050752	MS.gene60717	0.855535	5.91E-62	-1.69E-46
MS.gene050838	MS.gene60717	0.873528	1.37E-67	-1.69E-46
MS.gene050955	MS.gene60717	0.854406	1.26E-61	-1.69E-46

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene003409	MS.gene60717	PPI
MS.gene006126	MS.gene60717	PPI
MS.gene020509	MS.gene60717	PPI
MS.gene03522	MS.gene60717	PPI
MS.gene052666	MS.gene60717	PPI
MS.gene054292	MS.gene60717	PPI
MS.gene27648	MS.gene60717	PPI
MS.gene28960	MS.gene60717	PPI
MS.gene42236	MS.gene60717	PPI
MS.gene53517	MS.gene60717	PPI

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60717.t1	MTR_1g098170	100.000	152	0	1	152	1	152	6.47e-112	314
MS.gene60717.t1	MTR_1g098220	100.000	152	0	1	152	1	152	6.47e-112	314
MS.gene60717.t1	MTR_6g043210	98.684	152	2	1	152	1	152	6.70e-111	311
MS.gene60717.t1	MTR_1g492710	97.945	146	3	1	146	794	939	1.21e-97	303
MS.gene60717.t1	MTR_1g098220	99.160	119	1	1	119	1	119	2.71e-84	243
MS.gene60717.t1	MTR_5g027650	95.098	102	5	39	140	11	112	7.93e-69	203
MS.gene60717.t1	MTR_5g027580	93.137	102	7	39	140	48	149	7.08e-68	202
MS.gene60717.t1	MTR_5g027670	94.382	89	5	52	140	1	89	2.79e-58	176
MS.gene60717.t1	MTR_5g027615	94.382	89	5	52	140	1	89	7.00e-58	175
MS.gene60717.t1	MTR_5g027605	94.382	89	5	52	140	1	89	7.00e-58	175

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60717.t1	AT4G09800	92.763	152	11	1	152	1	152	1.89e-105	298
MS.gene60717.t1	AT1G34030	92.763	152	11	1	152	1	152	1.89e-105	298
MS.gene60717.t1	AT1G22780	92.763	152	11	1	152	1	152	1.89e-105	298

Showing 1 to 3 of 3 entries

Previous1Next

Find 36 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCAAGACTACAGGCCGCAG+GGG	0.654823	1.2:-71167210	MS.gene60717:CDS
ACCGGGGTTTGAGACACTAC+TGG	0.492415	1.2:-71167257	MS.gene60717:CDS
AGAAAGAAGGATTACAAGGA+TGG	0.565673	1.2:-71168271	MS.gene60717:CDS
ATACCAAGACTACAGGCCGC+AGG	0.594524	1.2:-71167212	MS.gene60717:CDS
ATGACCTCAATCAAGGGTAT+TGG	0.493197	1.2:-71168593	MS.gene60717:CDS
CAACTTCATGTCGAGTTGAT+TGG	0.309472	1.2:+71168228	None:intergenic
CAAGGATGGCAAATTCTCTC+AGG	0.484690	1.2:-71168257	MS.gene60717:CDS
CACCAACAGTCTTTCCCCTG+CGG	0.740988	1.2:+71167196	None:intergenic
CATGAAGTTGAGAGATGATT+TGG	0.279609	1.2:-71168215	MS.gene60717:CDS
CCCAGTAGTGTCTCAAACCC+CGG	0.525189	1.2:+71167256	None:intergenic

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATCAAATGTTTCCCATAAG+CGG	-	chr1.2:71168093-71168112	MS.gene60717:intron	30.0%
AGATGTAGTAGTAAGATGAT+AGG	-	chr1.2:71167896-71167915	MS.gene60717:intron	30.0%
AGTGTTTGAAAATAGAACAG+TGG	-	chr1.2:71168046-71168065	MS.gene60717:intron	30.0%
ATGAAAACAGTTTATGGACA+TGG	-	chr1.2:71168403-71168422	MS.gene60717:intron	30.0%
ATTTGCATAAGCAAACTGTT+TGG	+	chr1.2:71168452-71168471	None:intergenic	30.0%
GTGTTTGAAAATAGAACAGT+GGG	-	chr1.2:71168047-71168066	MS.gene60717:intron	30.0%
GTTGGATAATATTATGACAG+TGG	-	chr1.2:71167600-71167619	MS.gene60717:intron	30.0%
TTGTGATGTGTTATAGTCTT+TGG	-	chr1.2:71167245-71167264	MS.gene60717:CDS	30.0%
TTTCTGTTCAAAAACCAATC+TGG	+	chr1.2:71167652-71167671	None:intergenic	30.0%
TTTGCATAAGCAAACTGTTT+GGG	+	chr1.2:71168451-71168470	None:intergenic	30.0%

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	71167179	71168781	71167179	ID=MS.gene60717
chr1.2	mRNA	71167179	71168781	71167179	ID=MS.gene60717.t1;Parent=MS.gene60717
chr1.2	exon	71168779	71168781	71168779	ID=MS.gene60717.t1.exon1;Parent=MS.gene60717.t1
chr1.2	CDS	71168779	71168781	71168779	ID=cds.MS.gene60717.t1;Parent=MS.gene60717.t1
chr1.2	exon	71168539	71168699	71168539	ID=MS.gene60717.t1.exon2;Parent=MS.gene60717.t1
chr1.2	CDS	71168539	71168699	71168539	ID=cds.MS.gene60717.t1;Parent=MS.gene60717.t1
chr1.2	exon	71168196	71168384	71168196	ID=MS.gene60717.t1.exon3;Parent=MS.gene60717.t1
chr1.2	CDS	71168196	71168384	71168196	ID=cds.MS.gene60717.t1;Parent=MS.gene60717.t1
chr1.2	exon	71167179	71167284	71167179	ID=MS.gene60717.t1.exon4;Parent=MS.gene60717.t1
chr1.2	CDS	71167179	71167284	71167179	ID=cds.MS.gene60717.t1;Parent=MS.gene60717.t1

Gene Sequence

>MS.gene60717

ATGGTATGTTTTCGATCTCGATTTCATCTCGATGTAGCTGCTTAATCGCTGATTCTGTTTTTTTTTTTGTGATGTGTTATAGTCTTTGGTGGCGAACGAAGAATTTCAGCACATTCTGCGTGTGTTGAACACAAATGTTGATGGAAAGCAGAAGATCCAGTTCGCAATGACCTCAATCAAGGGTATTGGTAGGAGATTCGCTAACATCTGCTGTAAGAAAGCTGATGTTGACATGAACAAGAGGTTTGTAGTTGCGATTTTGATCTCATTTTTAAAAATCAGTCATTTTTGTTGTTCAAATTAATGGGTTTCTTGAGTTTAATCCATCTCACGTTTAAAAATCATATTTTTGATGTTGTTGAAATGGTTTTTTTTTTTTTTTGTTGGATTTATTTAGGGCTGGTGAATTGAGTGCTGCAGAGTTGGATAATATTATGACAGTGGTTGCAAATCCTCGTCAATTCAAGGTTCCAGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATTCTCTCAGGTTGTCTCCAATCAACTCGACATGAAGTTGAGAGATGATTTGGAGAGACTCAAGAAGATCCGGTAAGATGCTACTTCATTGTTTTTTGTGTGATTGTTTGCCTGTGTTAACTATAAAGATGATTCTCACTCAGTTGGTTTTTTAGTATAGGTTTAAATTAACATTTCAACACTATGTAGGAATATCAAAATTGAGATGTAGTAGTAAGATGATAGGACTAATAACCATTGCTTGATGCTTTAGAACGAGAATTAACTATTGGAGAATCTAAAGCTCATGCACTACCGCTGATGCACCACCACTGCATTGCTTTGATCGTGTGTGATGCTTTAGCTTTCTCAATAGTGTTTGAAAATAGAACAGTGGGAAGTGTTATTAGTTTACTTGAATAATCAAATGTTTCCCATAAGCGGAAATACGGGCAATAGAATTGGACCAAAAAGTAGCTGGCTCTTATCCAATGACTTGTATTTTGTTTTCTCTTGGCTAGATAGTTTCACGTTGTCTTCCTTGCATTTTTTACTATGTATTTGCATTTTTTACTATGTATGATATTCATGTTGATATAGGGATATATGTGTCGTGAGATGAAGTAACACAATAAAATTTTAGACTGTTTGGATAAACAGTTTAATTAAGCACTTATGGCGTAAGAAATAATCATACAAGTGCTTATTTGTCAGCTGTTTTTTATAATAAGATGAAAACAGTTTATGGACATGGCATAAACTGATTCTATAAGTTCCCCAAACAGTTTGCTTATGCAAATTGATTAGTTTAAATAAATCCTATCTGGGCATATGCCATTATTTTTTTACTACTCAAATTCTGTATTCAATAATACAATGGATGTATGTGGAGTTTTTTTACTACTCAAATTTTGAATTCAATTCAATAATATAATGGATGTATGTGGAGAAATTGGTCATTGGCTGGTTAATAAAATTTTACTAACATCCTTTCTGTTATGCAGTAATCACCGGGGTTTGAGACACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACAGGCCGCAGGGGAAAGACTGTTGGTGTCTCAAAGAAGCGTTAA

Protein sequence

>MS.gene60717.t1

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR