AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054292.t1 MTR_6g043210 100.000 152 0 0 1 152 1 152 5.14e-112 314
MS.gene054292.t1 MTR_1g098170 98.684 152 2 0 1 152 1 152 6.70e-111 311
MS.gene054292.t1 MTR_1g098220 98.684 152 2 0 1 152 1 152 6.70e-111 311
MS.gene054292.t1 MTR_1g492710 96.575 146 5 0 1 146 794 939 2.86e-95 297
MS.gene054292.t1 MTR_1g098220 97.479 119 3 0 1 119 1 119 2.06e-83 241
MS.gene054292.t1 MTR_5g027650 93.137 102 7 0 39 140 11 112 7.18e-68 201
MS.gene054292.t1 MTR_5g027580 91.176 102 9 0 39 140 48 149 6.00e-67 200
MS.gene054292.t1 MTR_5g027670 92.135 89 7 0 52 140 1 89 2.50e-57 174
MS.gene054292.t1 MTR_5g027615 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene054292.t1 MTR_5g027605 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene054292.t1 MTR_5g027640 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene054292.t1 MTR_5g027600 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene054292.t1 MTR_1005s0010 91.860 86 7 0 55 140 2 87 2.48e-55 169
MS.gene054292.t1 MTR_4g015960 70.270 74 15 2 68 137 10 80 2.02e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054292.t1 AT4G09800 91.447 152 13 0 1 152 1 152 1.91e-104 295
MS.gene054292.t1 AT1G34030 91.447 152 13 0 1 152 1 152 1.91e-104 295
MS.gene054292.t1 AT1G22780 91.447 152 13 0 1 152 1 152 1.91e-104 295

Find 31 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAGTTGAGGGATGATT+TGG 0.348922 6.1:+24919574 MS.gene054292:CDS
TCAGGTTGTTTCAAATCAAC+TGG 0.361693 6.1:+24919550 MS.gene054292:CDS
ATCGAGGTTTGAGACATTAC+TGG 0.376627 6.1:+24921377 MS.gene054292:CDS
ATGACTTCAATCAAAGGTAT+TGG 0.407492 6.1:+24918359 MS.gene054292:CDS
GGCAATTCAAGGTCCCTGAT+TGG 0.439048 6.1:+24919486 MS.gene054292:CDS
TACTGGGGTCTCCGTGTTCG+TGG 0.463684 6.1:+24921394 MS.gene054292:CDS
TGGAGCGCTTGAAGAAGATC+AGG 0.487727 6.1:+24919594 MS.gene054292:CDS
GTGTTGAATACCAACGTTGA+TGG 0.503977 6.1:+24918314 MS.gene054292:CDS
TCGAGGTTTGAGACATTACT+GGG 0.508041 6.1:+24921378 MS.gene054292:CDS
GACCTTGAATTGCCTAGGGT+TGG 0.508321 6.1:-24919477 None:intergenic
TCCTCTACGACCAGTAGTCT+TGG 0.513650 6.1:-24921425 None:intergenic
TGAATTGACTGCCGCTGAGT+TGG 0.517580 6.1:+24919433 MS.gene054292:CDS
GGACAGCACACCAAGACTAC+TGG 0.520479 6.1:+24921415 MS.gene054292:CDS
GAACAGAAAGAAGGATTACA+AGG 0.525479 6.1:+24919514 MS.gene054292:CDS
TGCCAACCCTAGGCAATTCA+AGG 0.526783 6.1:+24919475 MS.gene054292:CDS
TCAACTGGACATGAAGTTGA+GGG 0.551353 6.1:+24919565 MS.gene054292:CDS
ATCAACTGGACATGAAGTTG+AGG 0.554008 6.1:+24919564 MS.gene054292:CDS
TCAGGGACCTTGAATTGCCT+AGG 0.557398 6.1:-24919482 None:intergenic
AGAAAGAAGGATTACAAGGA+TGG 0.565673 6.1:+24919518 MS.gene054292:CDS
CAGGGACCTTGAATTGCCTA+GGG 0.574005 6.1:-24919481 None:intergenic
CTTCTGCTTTCCATCAACGT+TGG 0.575809 6.1:-24918324 None:intergenic
TGGTGTGCTGTCCACGAACA+CGG 0.579042 6.1:-24921405 None:intergenic
TGACTGTGGTTGCCAACCCT+AGG 0.601099 6.1:+24919465 MS.gene054292:CDS
CTGATGTTGACATGAACAAG+AGG 0.608795 6.1:+24918414 MS.gene054292:CDS
TTTGCTATGACTTCAATCAA+AGG 0.610699 6.1:+24918353 MS.gene054292:CDS
ACCAAGACTACTGGTCGTAG+AGG 0.645367 6.1:+24921424 MS.gene054292:CDS
GGTCGTAGAGGAAAGACTGT+CGG 0.671409 6.1:+24921436 MS.gene054292:CDS
GAATTATGCAGGAATCATCG+AGG 0.707085 6.1:+24921361 MS.gene054292:intron
GTTGGAGAACATTATGACTG+TGG 0.726380 6.1:+24919451 MS.gene054292:CDS
CATAATGTTCTCCAACTCAG+CGG 0.735443 6.1:-24919444 None:intergenic
CGAGGTTTGAGACATTACTG+GGG 0.783933 6.1:+24921379 MS.gene054292:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAAAAAAAAAAA+AGG - chr6.1:24921255-24921274 None:intergenic 0.0%
!! AAACTATTAAAATTATTTAG+AGG + chr6.1:24920984-24921003 MS.gene054292:intron 10.0%
!! ATTAAAAAAATTGTAGAAAA+TGG - chr6.1:24918211-24918230 None:intergenic 10.0%
!! TATCTATTTAACAAAATATT+TGG - chr6.1:24920895-24920914 None:intergenic 10.0%
!!! TGATTATTTTTTATATTGTT+TGG + chr6.1:24918894-24918913 MS.gene054292:intron 10.0%
!! AAAAAATGGCTTATAAAAAA+TGG + chr6.1:24919188-24919207 MS.gene054292:intron 15.0%
!! TTAGAATTTCATGTTTAATT+AGG + chr6.1:24918617-24918636 MS.gene054292:intron 15.0%
!! TTCATGATTTATATTGAAAT+GGG + chr6.1:24919353-24919372 MS.gene054292:intron 15.0%
!! TTCGTTATTATAATATGAAA+AGG - chr6.1:24919834-24919853 None:intergenic 15.0%
!! TTTCATGATTTATATTGAAA+TGG + chr6.1:24919352-24919371 MS.gene054292:intron 15.0%
!!! TCTGTTTTTGTTTTTTTTTT+TGG - chr6.1:24920578-24920597 None:intergenic 15.0%
!!! TGTAATTATGTTGTTTAATT+AGG + chr6.1:24919328-24919347 MS.gene054292:intron 15.0%
!!! TTAATTTTTTAGGGATTTTT+TGG + chr6.1:24918226-24918245 MS.gene054292:intron 15.0%
!!! TTGTTATTTATTTACAACTT+TGG + chr6.1:24919775-24919794 MS.gene054292:intron 15.0%
!!! TTTTATAGTGAAATTGATAT+TGG + chr6.1:24918513-24918532 MS.gene054292:intron 15.0%
!!! TTTTTTTTTGTTGGATTTAA+AGG + chr6.1:24918657-24918676 MS.gene054292:intron 15.0%
!! AAAAAATATCCAACATAGAA+AGG - chr6.1:24920383-24920402 None:intergenic 20.0%
!! TAATTAGGTTTATACTGTAA+TGG + chr6.1:24918632-24918651 MS.gene054292:intron 20.0%
!! TTCATGATTTATACTGTAAT+GGG + chr6.1:24918544-24918563 MS.gene054292:intron 20.0%
!! TTTCATGATTTATACTGTAA+TGG + chr6.1:24918543-24918562 MS.gene054292:intron 20.0%
!!! ATACTAGTATAAGTTTTAAG+AGG + chr6.1:24919022-24919041 MS.gene054292:intron 20.0%
!!! GTAATGGTTTTTTTTTTTGT+TGG + chr6.1:24918648-24918667 MS.gene054292:intron 20.0%
!!! TACACAACCATTTTTTAATT+TGG + chr6.1:24921179-24921198 MS.gene054292:intron 20.0%
!!! TTGGATATTTTTTCTGTTTT+TGG + chr6.1:24920390-24920409 MS.gene054292:intron 20.0%
!!! TTTATCTTTTGCTGAAAAAA+TGG + chr6.1:24919174-24919193 MS.gene054292:intron 20.0%
!!! TTTTTATAAGTTTTCCAAGA+TGG + chr6.1:24919105-24919124 MS.gene054292:intron 20.0%
! AACAAAAGCTCTTTCAAATT+AGG - chr6.1:24919760-24919779 None:intergenic 25.0%
! AGAGTATAGATCAAATGAAA+GGG + chr6.1:24920822-24920841 MS.gene054292:intron 25.0%
! ATCAGAAAAAAAACCAATGT+CGG - chr6.1:24919939-24919958 None:intergenic 25.0%
! ATTGAGATTGTTGAAGAAAA+TGG - chr6.1:24918181-24918200 None:intergenic 25.0%
! CATGTATAGATCAAATGAAA+GGG + chr6.1:24920937-24920956 MS.gene054292:intron 25.0%
! CTAAAAAACCAGAAAAACAA+AGG - chr6.1:24918455-24918474 None:intergenic 25.0%
! CTACCAACCAAATTAAAAAA+TGG - chr6.1:24921189-24921208 None:intergenic 25.0%
! GACAATAAAATACAATTGAC+AGG - chr6.1:24921305-24921324 None:intergenic 25.0%
! TACTTCAATTTGAATTATGC+AGG + chr6.1:24921350-24921369 MS.gene054292:intron 25.0%
! TGTTAAATAGATATGACTCA+TGG + chr6.1:24920902-24920921 MS.gene054292:intron 25.0%
! TTACATGTGACACATAATAA+TGG + chr6.1:24920207-24920226 MS.gene054292:intron 25.0%
! TTCGAAATAATCATAAGAGT+GGG - chr6.1:24918752-24918771 None:intergenic 25.0%
! TTGGAATTTCATGTTTACTT+AGG + chr6.1:24918913-24918932 MS.gene054292:intron 25.0%
! TTTAACTGATCAATAAAACC+TGG - chr6.1:24920493-24920512 None:intergenic 25.0%
! TTTCGAAATAATCATAAGAG+TGG - chr6.1:24918753-24918772 None:intergenic 25.0%
! TTTGTTGGATTTAAAGGATA+TGG + chr6.1:24918663-24918682 MS.gene054292:intron 25.0%
!! AAACAGAAAAATGTTGATTG+AGG - chr6.1:24920026-24920045 None:intergenic 25.0%
!! GAAAAATGTTGATTGAGTAA+AGG - chr6.1:24920156-24920175 None:intergenic 25.0%
!!! ATAAGTTTTAAGAGGCATTT+TGG + chr6.1:24919030-24919049 MS.gene054292:intron 25.0%
!!! CAACCATTTTTTAATTTGGT+TGG + chr6.1:24921183-24921202 MS.gene054292:intron 25.0%
!!! TAAGTTTTAAGAGGCATTTT+GGG + chr6.1:24919031-24919050 MS.gene054292:intron 25.0%
!!! TCCTTTTGAGTTTTCTATTT+GGG + chr6.1:24920437-24920456 MS.gene054292:intron 25.0%
AAGCATGTTCAAATTAGTGT+TGG + chr6.1:24921147-24921166 MS.gene054292:intron 30.0%
AAGTCTTGACTTAATTGGTT+TGG + chr6.1:24920762-24920781 MS.gene054292:intron 30.0%
ACCCAAATAGAAAACTCAAA+AGG - chr6.1:24920441-24920460 None:intergenic 30.0%
CAAAACAAAAACTACAGATG+TGG - chr6.1:24920133-24920152 None:intergenic 30.0%
CAAAAGGACGAAAATTGTAA+TGG - chr6.1:24920425-24920444 None:intergenic 30.0%
CAATACATAAACTACAGATG+TGG - chr6.1:24920240-24920259 None:intergenic 30.0%
CACAAATACAACAATGACAA+AGG - chr6.1:24920286-24920305 None:intergenic 30.0%
CCATGTATAGATCAAATGAA+AGG + chr6.1:24920936-24920955 MS.gene054292:intron 30.0%
CCTTTCATTTGATCTATACA+TGG - chr6.1:24920939-24920958 None:intergenic 30.0%
CTCCTTAATTCTGAATCTAT+AGG - chr6.1:24920804-24920823 None:intergenic 30.0%
GACCTATAGATTCAGAATTA+AGG + chr6.1:24920799-24920818 MS.gene054292:intron 30.0%
TAGTGAAGTCTTGACTTAAT+TGG + chr6.1:24920757-24920776 MS.gene054292:intron 30.0%
TATTGCCAATAGTGATTAGA+TGG + chr6.1:24920255-24920274 MS.gene054292:intron 30.0%
TCATTTGATCTATACATGGT+AGG - chr6.1:24920935-24920954 None:intergenic 30.0%
TCGAAATAATCATAAGAGTG+GGG - chr6.1:24918751-24918770 None:intergenic 30.0%
TGAATTATTTGCATAACTCG+TGG + chr6.1:24919854-24919873 MS.gene054292:intron 30.0%
TGTTTCCATCTAATCACTAT+TGG - chr6.1:24920263-24920282 None:intergenic 30.0%
TTCTGTTCAAAAACCAATCA+GGG - chr6.1:24919502-24919521 None:intergenic 30.0%
TTTCTGTTCAAAAACCAATC+AGG - chr6.1:24919503-24919522 None:intergenic 30.0%
! ATGACTTCAATCAAAGGTAT+TGG + chr6.1:24918359-24918378 MS.gene054292:CDS 30.0%
! GAGAGTATAGATCAAATGAA+AGG + chr6.1:24920821-24920840 MS.gene054292:intron 30.0%
! TTCGAAATTTTCTGTTGAGA+TGG + chr6.1:24921215-24921234 MS.gene054292:intron 30.0%
! TTTGCTATGACTTCAATCAA+AGG + chr6.1:24918353-24918372 MS.gene054292:CDS 30.0%
!! TTGGTTTTTGAACAGAAAGA+AGG + chr6.1:24919505-24919524 MS.gene054292:CDS 30.0%
!!! ATTGTTTTGATTTTCAGAGC+TGG + chr6.1:24919410-24919429 MS.gene054292:intron 30.0%
!!! GTCCTTTTGAGTTTTCTATT+TGG + chr6.1:24920436-24920455 MS.gene054292:intron 30.0%
!!! TCATCAATCCTTTGTTTTTC+TGG + chr6.1:24918444-24918463 MS.gene054292:intron 30.0%
!!! TTTTGAGTTTTCTATTTGGG+TGG + chr6.1:24920440-24920459 MS.gene054292:intron 30.0%
AAACTTAGCCTAACTGCAAT+GGG + chr6.1:24919282-24919301 MS.gene054292:intron 35.0%
AAGATACGTGTTATGTTGGA+GGG + chr6.1:24921108-24921127 MS.gene054292:intron 35.0%
AATAGATATGACTCATGGTG+TGG + chr6.1:24920907-24920926 MS.gene054292:intron 35.0%
ACATGGTAGAATTCACAACA+TGG - chr6.1:24921037-24921056 None:intergenic 35.0%
AGAAAGAAGGATTACAAGGA+TGG + chr6.1:24919518-24919537 MS.gene054292:CDS 35.0%
ATGCGAATATTAGACGAGTT+AGG + chr6.1:24920684-24920703 MS.gene054292:intron 35.0%
ATGTTGTGAATTCTACCATG+TGG + chr6.1:24921036-24921055 MS.gene054292:intron 35.0%
ATGTTTGTTCTGTAGTTTGG+TGG + chr6.1:24919639-24919658 MS.gene054292:intron 35.0%
CAACATAACACGTATCTTAC+AGG - chr6.1:24921106-24921125 None:intergenic 35.0%
CATGGTAGAATTCACAACAT+GGG - chr6.1:24921036-24921055 None:intergenic 35.0%
CTCATGTTTGTTCTGTAGTT+TGG + chr6.1:24919636-24919655 MS.gene054292:intron 35.0%
CTCTTTCAAATTAGGTGAGA+AGG - chr6.1:24919752-24919771 None:intergenic 35.0%
CTGTAAGATACGTGTTATGT+TGG + chr6.1:24921104-24921123 MS.gene054292:intron 35.0%
GAACAGAAAGAAGGATTACA+AGG + chr6.1:24919514-24919533 MS.gene054292:CDS 35.0%
GATATAATCATCACGAGGAA+TGG + chr6.1:24919876-24919895 MS.gene054292:intron 35.0%
GATGTTTACAAAAGCCATCT+TGG - chr6.1:24919122-24919141 None:intergenic 35.0%
GTAGTCGAATTGCTAAATGT+TGG + chr6.1:24920844-24920863 MS.gene054292:intron 35.0%
TAAGATACGTGTTATGTTGG+AGG + chr6.1:24921107-24921126 MS.gene054292:intron 35.0%
TAAGCTCAAATAAGCCAATC+CGG - chr6.1:24919001-24919020 None:intergenic 35.0%
TGCATGATAACATTAGAGAG+AGG + chr6.1:24920711-24920730 MS.gene054292:intron 35.0%
! GGTACTCATTAGTATTGAAC+TGG + chr6.1:24919660-24919679 MS.gene054292:intron 35.0%
! TAACTGCAATGGGTTTACTT+GGG + chr6.1:24919292-24919311 MS.gene054292:intron 35.0%
! TCAGGTTGTTTCAAATCAAC+TGG + chr6.1:24919550-24919569 MS.gene054292:CDS 35.0%
!!! CAAGATTGTTTTGATCGTCA+AGG + chr6.1:24919972-24919991 MS.gene054292:intron 35.0%
AAAACATGTCTGTCCGACAT+TGG + chr6.1:24919923-24919942 MS.gene054292:intron 40.0%
AAACCTGGCTTAGACTCTTA+AGG - chr6.1:24920478-24920497 None:intergenic 40.0%
AAACTCAATGTTGCAGCGAT+GGG + chr6.1:24920644-24920663 MS.gene054292:intron 40.0%
AACCTGGCTTAGACTCTTAA+GGG - chr6.1:24920477-24920496 None:intergenic 40.0%
ACAGGTCAGGATTCATTACA+TGG - chr6.1:24921088-24921107 None:intergenic 40.0%
ATCAACTGGACATGAAGTTG+AGG + chr6.1:24919564-24919583 MS.gene054292:CDS 40.0%
CAAACTTAGCCTAACTGCAA+TGG + chr6.1:24919281-24919300 MS.gene054292:intron 40.0%
CAAGTAAACCCATTGCAGTT+AGG - chr6.1:24919293-24919312 None:intergenic 40.0%
CAGGTCAGGATTCATTACAT+GGG - chr6.1:24921087-24921106 None:intergenic 40.0%
CATAATGTTCTCCAACTCAG+CGG - chr6.1:24919447-24919466 None:intergenic 40.0%
CATGAAGTTGAGGGATGATT+TGG + chr6.1:24919574-24919593 MS.gene054292:CDS 40.0%
CATTGCAGTTAGGCTAAGTT+TGG - chr6.1:24919283-24919302 None:intergenic 40.0%
CTGATGTTGACATGAACAAG+AGG + chr6.1:24918414-24918433 MS.gene054292:CDS 40.0%
GAATTATGCAGGAATCATCG+AGG + chr6.1:24921361-24921380 MS.gene054292:intron 40.0%
GAGGAAAAAAAGTCGAGAGA+GGG - chr6.1:24920007-24920026 None:intergenic 40.0%
GTAGTCGAATCGCTAAATGT+TGG + chr6.1:24920959-24920978 MS.gene054292:intron 40.0%
GTGTTGAATACCAACGTTGA+TGG + chr6.1:24918314-24918333 MS.gene054292:CDS 40.0%
GTTGGAGAACATTATGACTG+TGG + chr6.1:24919451-24919470 MS.gene054292:CDS 40.0%
TAAACTCAATGTTGCAGCGA+TGG + chr6.1:24920643-24920662 MS.gene054292:intron 40.0%
TAACACGTATCTTACAGGTC+AGG - chr6.1:24921101-24921120 None:intergenic 40.0%
TCAACTGGACATGAAGTTGA+GGG + chr6.1:24919565-24919584 MS.gene054292:CDS 40.0%
TCGTGGATATAATCATCACG+AGG + chr6.1:24919871-24919890 MS.gene054292:intron 40.0%
TGAGGAAAAAAAGTCGAGAG+AGG - chr6.1:24920008-24920027 None:intergenic 40.0%
TTGTTGCCCAACTAGATCTA+GGG + chr6.1:24918970-24918989 MS.gene054292:intron 40.0%
! ATCGAGGTTTGAGACATTAC+TGG + chr6.1:24921377-24921396 MS.gene054292:CDS 40.0%
! CTAACTGCAATGGGTTTACT+TGG + chr6.1:24919291-24919310 MS.gene054292:intron 40.0%
! GAGTTTTCTATTTGGGTGGT+TGG + chr6.1:24920444-24920463 MS.gene054292:intron 40.0%
! GTGATGATTTGTGCAGTCTT+TGG + chr6.1:24918259-24918278 MS.gene054292:intron 40.0%
! GTGGTTTAGCCTTTCTATGT+TGG + chr6.1:24920371-24920390 MS.gene054292:intron 40.0%
! TCGAGGTTTGAGACATTACT+GGG + chr6.1:24921378-24921397 MS.gene054292:CDS 40.0%
AAACCACATCATTAGCGTGC+AGG - chr6.1:24920358-24920377 None:intergenic 45.0%
AGCACGGATGATAAGTGCTT+AGG - chr6.1:24919230-24919249 None:intergenic 45.0%
ATCCCTTAAGAGTCTAAGCC+AGG + chr6.1:24920472-24920491 MS.gene054292:intron 45.0%
CAGGTAGGAAACAGACAAGT+TGG - chr6.1:24920339-24920358 None:intergenic 45.0%
CCAACACAACTTACTCCACA+TGG - chr6.1:24921054-24921073 None:intergenic 45.0%
CCATGTGGAGTAAGTTGTGT+TGG + chr6.1:24921051-24921070 MS.gene054292:intron 45.0%
CTTCTGCTTTCCATCAACGT+TGG - chr6.1:24918327-24918346 None:intergenic 45.0%
GTTGTTGCCCAACTAGATCT+AGG + chr6.1:24918969-24918988 MS.gene054292:intron 45.0%
TCAAATAAGCCAATCCGGAC+AGG - chr6.1:24918996-24919015 None:intergenic 45.0%
TGCAGCTTATAGCACAAGCA+CGG - chr6.1:24919246-24919265 None:intergenic 45.0%
! CAAGGATGGCAAGTTTTCTC+AGG + chr6.1:24919532-24919551 MS.gene054292:CDS 45.0%
! CGAGGTTTGAGACATTACTG+GGG + chr6.1:24921379-24921398 MS.gene054292:CDS 45.0%
!! AAATTATTAAAATTATTTAG+AGG + chr6.1:24920869-24920888 MS.gene054292:intron 5.0%
!! TATATATTTAACAAAATATT+TGG - chr6.1:24921010-24921029 None:intergenic 5.0%
!!! ACAATTTTTTTAATTTTTTA+GGG + chr6.1:24918217-24918236 MS.gene054292:intron 5.0%
!!! ATTGATTTTAAATATTTTTA+AGG + chr6.1:24918870-24918889 MS.gene054292:intron 5.0%
!!! TACAATTTTTTTAATTTTTT+AGG + chr6.1:24918216-24918235 MS.gene054292:intron 5.0%
ACCAAGACTACTGGTCGTAG+AGG + chr6.1:24921424-24921443 MS.gene054292:CDS 50.0%
CACATCATTAGCGTGCAGGT+AGG - chr6.1:24920354-24920373 None:intergenic 50.0%
CAGGGACCTTGAATTGCCTA+GGG - chr6.1:24919484-24919503 None:intergenic 50.0%
CTACCTGCACGCTAATGATG+TGG + chr6.1:24920352-24920371 MS.gene054292:intron 50.0%
GACAGGCCCTAGATCTAGTT+GGG - chr6.1:24918979-24918998 None:intergenic 50.0%
GACCTTGAATTGCCTAGGGT+TGG - chr6.1:24919480-24919499 None:intergenic 50.0%
GGCAATTCAAGGTCCCTGAT+TGG + chr6.1:24919486-24919505 MS.gene054292:CDS 50.0%
GGTCGTAGAGGAAAGACTGT+CGG + chr6.1:24921436-24921455 MS.gene054292:CDS 50.0%
TCAGGGACCTTGAATTGCCT+AGG - chr6.1:24919485-24919504 None:intergenic 50.0%
TCCTCTACGACCAGTAGTCT+TGG - chr6.1:24921428-24921447 None:intergenic 50.0%
TGAATTGACTGCCGCTGAGT+TGG + chr6.1:24919433-24919452 MS.gene054292:CDS 50.0%
TGCCAACCCTAGGCAATTCA+AGG + chr6.1:24919475-24919494 MS.gene054292:CDS 50.0%
! AACTAGATCTAGGGCCTGTC+CGG + chr6.1:24918979-24918998 MS.gene054292:intron 50.0%
! TGGAGCGCTTGAAGAAGATC+AGG + chr6.1:24919594-24919613 MS.gene054292:CDS 50.0%
CAGCGATGGGAATGTTGTGC+TGG + chr6.1:24920657-24920676 MS.gene054292:intron 55.0%
GGACAGCACACCAAGACTAC+TGG + chr6.1:24921415-24921434 MS.gene054292:CDS 55.0%
GGACAGGCCCTAGATCTAGT+TGG - chr6.1:24918980-24918999 None:intergenic 55.0%
TGACTGTGGTTGCCAACCCT+AGG + chr6.1:24919465-24919484 MS.gene054292:CDS 55.0%
TGGTGTGCTGTCCACGAACA+CGG - chr6.1:24921408-24921427 None:intergenic 55.0%
TACTGGGGTCTCCGTGTTCG+TGG + chr6.1:24921394-24921413 MS.gene054292:CDS 60.0%
! GATCTAGGGCCTGTCCGGAT+TGG + chr6.1:24918984-24919003 MS.gene054292:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 24918167 24921477 24918167 ID=MS.gene054292
chr6.1 mRNA 24918167 24921477 24918167 ID=MS.gene054292.t1;Parent=MS.gene054292
chr6.1 exon 24918167 24918169 24918167 ID=MS.gene054292.t1.exon1;Parent=MS.gene054292.t1
chr6.1 CDS 24918167 24918169 24918167 ID=cds.MS.gene054292.t1;Parent=MS.gene054292.t1
chr6.1 exon 24918275 24918435 24918275 ID=MS.gene054292.t1.exon2;Parent=MS.gene054292.t1
chr6.1 CDS 24918275 24918435 24918275 ID=cds.MS.gene054292.t1;Parent=MS.gene054292.t1
chr6.1 exon 24919427 24919615 24919427 ID=MS.gene054292.t1.exon3;Parent=MS.gene054292.t1
chr6.1 CDS 24919427 24919615 24919427 ID=cds.MS.gene054292.t1;Parent=MS.gene054292.t1
chr6.1 exon 24921372 24921477 24921372 ID=MS.gene054292.t1.exon4;Parent=MS.gene054292.t1
chr6.1 CDS 24921372 24921477 24921372 ID=cds.MS.gene054292.t1;Parent=MS.gene054292.t1
Gene Sequence

>MS.gene054292

ATGGTACATATCCATTTTCTTCAACAATCTCAATTTCAAATCCATTTTCTACAATTTTTTTAATTTTTTAGGGATTTTTTGGTTGAATTTTTGTGATGATTTGTGCAGTCTTTGGTAGCGAACGAAGAGTTTCAACACATTCTGCGTGTGTTGAATACCAACGTTGATGGAAAGCAGAAGATACAGTTTGCTATGACTTCAATCAAAGGTATTGGAAGAAGATTTGCTAACATTTGTTGCAAGAAAGCTGATGTTGACATGAACAAGAGGTATTGTTTCATCAATCCTTTGTTTTTCTGGTTTTTTAGCTTTTGTTTTTGTTTTTGTCTTAAATTTTCTATTTGTTTTTTATAGTGAAATTGATATTGGTAATTTTTTTCATGATTTATACTGTAATGGGTTTTAAATGTTTTCTAGTTTAATTAGTTTATTGATTATTGTTGTTATTTCTTAGAATTTCATGTTTAATTAGGTTTATACTGTAATGGTTTTTTTTTTTGTTGGATTTAAAGGATATGGTTCGTCAGTGTAAAACAGTTTTACACTGAGATTCAATGAAAATCTATGATTTTGTCACACATCCCCACTCTTATGATTATTTCGAAATTAACTGTGACATGAAATTAATTAATTGAATGTCAGTGTAAAACTATTTTACACTGACAGTGTAAAACTATTTTAAAAATTCATGTTTTATACTGTAATTGATTTTAAATATTTTTAAGGTTGATTATTTTTTATATTGTTTGGAATTTCATGTTTACTTAGGTATATACTGCAATGATTTTTTGTTGTTGTTGTTGTTGTTGCCCAACTAGATCTAGGGCCTGTCCGGATTGGCTTATTTGAGCTTATATACTAGTATAAGTTTTAAGAGGCATTTTGGGAGAATTTAATAAATCAGCTTATGACATTTTTTGTAAACTTTTAACAACTTATTTTTATAAGTTTTCCAAGATGGCTTTTGTAAACATCTTATAGCATATGCAAAAACAATTTATTTTTATTTTATCTTTTGCTGAAAAAATGGCTTATAAAAAATGGCTTATATAAGCTTATACCTAAGCACTTATCATCCGTGCTTGTGCTATAAGCTGCAAATAAGTTGTTTATCCAAACTTAGCCTAACTGCAATGGGTTTACTTGGGTTTTACTGCTTTGTGTAATTATGTTGTTTAATTAGGATTTCATGATTTATATTGAAATGGGTTTTTAGCAATTTTCAAGTTTAATTAGTTTAGTGATTGTTTTGATTTTCAGAGCTGGTGAATTGACTGCCGCTGAGTTGGAGAACATTATGACTGTGGTTGCCAACCCTAGGCAATTCAAGGTCCCTGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAGTTTTCTCAGGTTGTTTCAAATCAACTGGACATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAGATCAGGTGATTATATTTGCATATTTCTCATGTTTGTTCTGTAGTTTGGTGGTACTCATTAGTATTGAACTGGATTCACTTTGATTTTTATTGATACAATCAGTTTTCTATTTTGATTTTCATTGTATTTCTTTACTTGCCTTCTCACCTAATTTGAAAGAGCTTTTGTTATTTATTTACAACTTTGGAAAGCTTTTGTTGATGCTATTGATTGTTTCTGTCCTTTTCATATTATAATAACGAATGAATTATTTGCATAACTCGTGGATATAATCATCACGAGGAATGGTACTTCTGATGAAGCATACTAAATAAAACATGTCTGTCCGACATTGGTTTTTTTTCTGATATAGATATCGAAACAAGATTGTTTTGATCGTCAAGGACACACTGACCCTCTCTCGACTTTTTTTCCTCAATCAACATTTTTCTGTTTCATTAGACAGATAGTTTATGTTTTGATTACACGTGCACACGTAATTATTTGAAAAAACATACGTGATTGAATGTTGATCTGTTACCACATCTGTAGTTTTTGTTTTGCCTTTACTCAATCAACATTTTTCTGTTTCATTAGACAAATAGTTTATATTTTGATTACATGTGACACATAATAATGGTCTGTTACCACATCTGTAGTTTATGTATTGCCAATAGTGATTAGATGGAAACACCTTTGTCATTGTTGTATTTGTGTCAGTGCTACATAGTTATATATGTTATCTTCCAACTTGTCTGTTTCCTACCTGCACGCTAATGATGTGGTTTAGCCTTTCTATGTTGGATATTTTTTCTGTTTTTGGTCTTTTTCACCATTACAATTTTCGTCCTTTTGAGTTTTCTATTTGGGTGGTTGGACTTGATCCCTTAAGAGTCTAAGCCAGGTTTTATTGATCAGTTAAAATTTGATGATAAAAAAAATGTAAGTCAAGAGAATAATAAAAGATGATAAAAGACTAGACATTCCAAAAAAAAAAACAAAAACAGATTTTATGTCTTCTCAATTCTGTTGTATGAGACATGTATACAAGAATAAACTCAATGTTGCAGCGATGGGAATGTTGTGCTGGATGAATGCGAATATTAGACGAGTTAGGATTTTGCATGATAACATTAGAGAGAGGTTTTAATATTACAAATTAAAAGATAGTGAAGTCTTGACTTAATTGGTTTGGTCATCTCTGTAAAAGACCTATAGATTCAGAATTAAGGAGAGTATAGATCAAATGAAAGGGTAGTCGAATTGCTAAATGTTGGCAAAATTATTAAAATTATTTAGAGGCCAAATATTTTGTTAAATAGATATGACTCATGGTGTGGATCCTACCATGTATAGATCAAATGAAAGGGTAGTCGAATCGCTAAATGTTGGCAAAACTATTAAAATTATTTAGAGGCCAAATATTTTGTTAAATATATATGACCCATGTTGTGAATTCTACCATGTGGAGTAAGTTGTGTTGGTGTATTTTGTCCCATGTAATGAATCCTGACCTGTAAGATACGTGTTATGTTGGAGGGTTTTTTCAACGACTATAAGCATGTTCAAATTAGTGTTGGTTTAAATCTTACACAACCATTTTTTAATTTGGTTGGTAGTTTGTTTTCGAAATTTTCTGTTGAGATGGCATAACTGCGTCTGCCTTTTTTTTTTTTTTTATTTTTTGTATATACTTTTTTTGAGAATATGTTCCTGTCAATTGTATTTTATTGTCAGTATATGTATATTATAGATATTAATACTTCAATTTGAATTATGCAGGAATCATCGAGGTTTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAGCACACCAAGACTACTGGTCGTAGAGGAAAGACTGTCGGTGTCTCTAAGAAGCGTTGA
Protein sequence

>MS.gene054292.t1

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELTAAELENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR