AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03522

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03522.t1 MTR_6g043210 100.000 152 0 0 1 152 1 152 5.14e-112 314
MS.gene03522.t1 MTR_1g098170 98.684 152 2 0 1 152 1 152 6.70e-111 311
MS.gene03522.t1 MTR_1g098220 98.684 152 2 0 1 152 1 152 6.70e-111 311
MS.gene03522.t1 MTR_1g492710 96.575 146 5 0 1 146 794 939 2.86e-95 297
MS.gene03522.t1 MTR_1g098220 97.479 119 3 0 1 119 1 119 2.06e-83 241
MS.gene03522.t1 MTR_5g027650 93.137 102 7 0 39 140 11 112 7.18e-68 201
MS.gene03522.t1 MTR_5g027580 91.176 102 9 0 39 140 48 149 6.00e-67 200
MS.gene03522.t1 MTR_5g027670 92.135 89 7 0 52 140 1 89 2.50e-57 174
MS.gene03522.t1 MTR_5g027615 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene03522.t1 MTR_5g027605 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene03522.t1 MTR_5g027640 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene03522.t1 MTR_5g027600 92.135 89 7 0 52 140 1 89 7.98e-57 172
MS.gene03522.t1 MTR_1005s0010 91.860 86 7 0 55 140 2 87 2.48e-55 169
MS.gene03522.t1 MTR_4g015960 70.270 74 15 2 68 137 10 80 2.02e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03522.t1 AT4G09800 91.447 152 13 0 1 152 1 152 1.91e-104 295
MS.gene03522.t1 AT1G34030 91.447 152 13 0 1 152 1 152 1.91e-104 295
MS.gene03522.t1 AT1G22780 91.447 152 13 0 1 152 1 152 1.91e-104 295

Find 32 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAGTTGAGGGATGATT+TGG 0.348922 6.2:+38096094 MS.gene03522:CDS
TCAGGTTGTTTCAAATCAAC+TGG 0.361693 6.2:+38096070 MS.gene03522:CDS
ACCGAGGTTTGAGACATTAC+TGG 0.395796 6.2:+38097900 MS.gene03522:CDS
ATGACTTCAATCAAAGGTAT+TGG 0.407492 6.2:+38094878 MS.gene03522:CDS
GGCAATTCAAGGTCCCTGAT+TGG 0.439048 6.2:+38096006 MS.gene03522:CDS
CCGAGGTTTGAGACATTACT+GGG 0.449031 6.2:+38097901 MS.gene03522:CDS
TACTGGGGTCTCCGTGTTCG+TGG 0.463684 6.2:+38097917 MS.gene03522:CDS
TGGAGCGCTTGAAGAAGATC+AGG 0.487727 6.2:+38096114 MS.gene03522:CDS
GTGTTGAATACCAACGTTGA+TGG 0.503977 6.2:+38094833 MS.gene03522:CDS
GACCTTGAATTGCCTAGGGT+TGG 0.508321 6.2:-38095997 None:intergenic
TCCTCTACGACCAGTAGTCT+TGG 0.513650 6.2:-38097948 None:intergenic
TGAATTGACTGCCGCTGAGT+TGG 0.517580 6.2:+38095953 MS.gene03522:CDS
GGACAGCACACCAAGACTAC+TGG 0.520479 6.2:+38097938 MS.gene03522:CDS
GAACAGAAAGAAGGATTACA+AGG 0.525479 6.2:+38096034 MS.gene03522:CDS
TGCCAACCCTAGGCAATTCA+AGG 0.526783 6.2:+38095995 MS.gene03522:CDS
TCAACTGGACATGAAGTTGA+GGG 0.551353 6.2:+38096085 MS.gene03522:CDS
ATCAACTGGACATGAAGTTG+AGG 0.554008 6.2:+38096084 MS.gene03522:CDS
CCCAGTAATGTCTCAAACCT+CGG 0.554125 6.2:-38097901 None:intergenic
TCAGGGACCTTGAATTGCCT+AGG 0.557398 6.2:-38096002 None:intergenic
AGAAAGAAGGATTACAAGGA+TGG 0.565673 6.2:+38096038 MS.gene03522:CDS
CAGGGACCTTGAATTGCCTA+GGG 0.574005 6.2:-38096001 None:intergenic
CTTCTGCTTTCCATCAACGT+TGG 0.575809 6.2:-38094843 None:intergenic
TGGTGTGCTGTCCACGAACA+CGG 0.579042 6.2:-38097928 None:intergenic
TGACTGTGGTTGCCAACCCT+AGG 0.601099 6.2:+38095985 MS.gene03522:CDS
CTGATGTTGACATGAACAAG+AGG 0.608795 6.2:+38094933 MS.gene03522:CDS
TTTGCTATGACTTCAATCAA+AGG 0.610699 6.2:+38094872 MS.gene03522:CDS
ACCAAGACTACTGGTCGTAG+AGG 0.645367 6.2:+38097947 MS.gene03522:CDS
GGTCGTAGAGGAAAGACTGT+CGG 0.671409 6.2:+38097959 MS.gene03522:CDS
GTTGGAGAACATTATGACTG+TGG 0.726380 6.2:+38095971 MS.gene03522:CDS
CATAATGTTCTCCAACTCAG+CGG 0.735443 6.2:-38095964 None:intergenic
GAATTATGCAGGAATCACCG+AGG 0.739024 6.2:+38097884 MS.gene03522:intron
CGAGGTTTGAGACATTACTG+GGG 0.796352 6.2:+38097902 MS.gene03522:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTATTAAAATTATTTAG+AGG + chr6.2:38097505-38097524 MS.gene03522:intron 10.0%
!! TATCTATTTAACAAAATATT+TGG - chr6.2:38097416-38097435 None:intergenic 10.0%
!! TTAAAAAAATTTGTAGAAAA+TGG - chr6.2:38094729-38094748 None:intergenic 10.0%
!!! TGATTATTTTTTATATTGTT+TGG + chr6.2:38095420-38095439 MS.gene03522:intron 10.0%
!! AAAAAATGGCTTATAAAAAA+TGG + chr6.2:38095708-38095727 MS.gene03522:intron 15.0%
!! TAATTAGGTTTATACTTAAA+TGG + chr6.2:38095152-38095171 MS.gene03522:intron 15.0%
!! TTCATGATTTATATTGAAAT+GGG + chr6.2:38095873-38095892 MS.gene03522:intron 15.0%
!! TTCGTTATTATAATATGAAA+AGG - chr6.2:38096354-38096373 None:intergenic 15.0%
!! TTTCATGATTTATATTGAAA+TGG + chr6.2:38095872-38095891 MS.gene03522:intron 15.0%
!!! ATCTGTTTTTGTTTTTTTTT+TGG - chr6.2:38097100-38097119 None:intergenic 15.0%
!!! ATTTTTTTTGTTGGATTTAA+GGG + chr6.2:38095175-38095194 MS.gene03522:intron 15.0%
!!! TGTAATTATGTTGTTTAATT+AGG + chr6.2:38095848-38095867 MS.gene03522:intron 15.0%
!!! TTAATTTTTTAGGGATTTTT+TGG + chr6.2:38094745-38094764 MS.gene03522:intron 15.0%
!!! TTTTATAGTGAAATTGATAT+TGG + chr6.2:38095032-38095051 MS.gene03522:intron 15.0%
!! AAAAAATATCCAACATAGAA+AGG - chr6.2:38096905-38096924 None:intergenic 20.0%
!! AAACAGAAAAATGTTAATTG+AGG - chr6.2:38096546-38096565 None:intergenic 20.0%
!! TTAGAATTTGATGTCTAATT+AGG + chr6.2:38095137-38095156 MS.gene03522:intron 20.0%
!! TTCATGATTTATACTGTAAT+GGG + chr6.2:38095064-38095083 MS.gene03522:intron 20.0%
!! TTTCATGATTTATACTGTAA+TGG + chr6.2:38095063-38095082 MS.gene03522:intron 20.0%
!!! ATACTAGTATAAGTTTTAAG+AGG + chr6.2:38095542-38095561 MS.gene03522:intron 20.0%
!!! CTTAAATGGATTTTTTTTGT+TGG + chr6.2:38095166-38095185 MS.gene03522:intron 20.0%
!!! GATTTTTTTTGTTGGATTTA+AGG + chr6.2:38095174-38095193 MS.gene03522:intron 20.0%
!!! TTGGATATTTTTTCTGTTTT+TGG + chr6.2:38096912-38096931 MS.gene03522:intron 20.0%
!!! TTGTTATTTATTTACGACTT+TGG + chr6.2:38096295-38096314 MS.gene03522:intron 20.0%
!!! TTTATCTTTTGCTGAAAAAA+TGG + chr6.2:38095694-38095713 MS.gene03522:intron 20.0%
!!! TTTTTATAAGTTTTCCAAGA+TGG + chr6.2:38095625-38095644 MS.gene03522:intron 20.0%
! AACAAAAGCTCTTTCAAATT+AGG - chr6.2:38096280-38096299 None:intergenic 25.0%
! AGAGTATAGATCAAATGAAA+GGG + chr6.2:38097343-38097362 MS.gene03522:intron 25.0%
! CATGTATAGATCAAATGAAA+GGG + chr6.2:38097458-38097477 MS.gene03522:intron 25.0%
! CTAAAAAACCAGAAAAACAA+AGG - chr6.2:38094974-38094993 None:intergenic 25.0%
! GATTGTTGAATTGAAGAAAA+TGG - chr6.2:38094694-38094713 None:intergenic 25.0%
! TACTTCAATTTGAATTATGC+AGG + chr6.2:38097873-38097892 MS.gene03522:intron 25.0%
! TGTTAAATAGATATGACTCA+TGG + chr6.2:38097423-38097442 MS.gene03522:intron 25.0%
! TTACATGTGACACATAATAA+TGG + chr6.2:38096727-38096746 MS.gene03522:intron 25.0%
! TTCGAAATAATCATAAGAGT+GGG - chr6.2:38095270-38095289 None:intergenic 25.0%
! TTGGAATTTCATGTTTACTT+AGG + chr6.2:38095439-38095458 MS.gene03522:intron 25.0%
! TTTAACTGATCAATAAAACC+TGG - chr6.2:38097015-38097034 None:intergenic 25.0%
! TTTCGAAATAATCATAAGAG+TGG - chr6.2:38095271-38095290 None:intergenic 25.0%
!! GAAAAATGTTGATTGAGTAA+AGG - chr6.2:38096676-38096695 None:intergenic 25.0%
!!! ATAAGTTTTAAGAGGCATTT+TGG + chr6.2:38095550-38095569 MS.gene03522:intron 25.0%
!!! ATGGGTTTTAAATGTTTTCT+AGG + chr6.2:38095082-38095101 MS.gene03522:intron 25.0%
!!! TAAGTTTTAAGAGGCATTTT+GGG + chr6.2:38095551-38095570 MS.gene03522:intron 25.0%
!!! TACACAACCATTTTTCAATT+TGG + chr6.2:38097716-38097735 MS.gene03522:intron 25.0%
!!! TCCTTTTGAGTTTTCTATTT+GGG + chr6.2:38096959-38096978 MS.gene03522:intron 25.0%
AAGCATGTTCAAATTAGTGT+TGG + chr6.2:38097684-38097703 MS.gene03522:intron 30.0%
AAGTCTTGACTTAATTGGTT+TGG + chr6.2:38097283-38097302 MS.gene03522:intron 30.0%
ACCCAAATAGAAAACTCAAA+AGG - chr6.2:38096963-38096982 None:intergenic 30.0%
ATCAGAAAAACAACCAATGT+CGG - chr6.2:38096459-38096478 None:intergenic 30.0%
CAAAACAAAAACTACAGATG+TGG - chr6.2:38096653-38096672 None:intergenic 30.0%
CAAAAGGACGAAAATTGTAA+TGG - chr6.2:38096947-38096966 None:intergenic 30.0%
CAATACATAAACTACAGATG+TGG - chr6.2:38096760-38096779 None:intergenic 30.0%
CACAAATACAACAATGACAA+AGG - chr6.2:38096806-38096825 None:intergenic 30.0%
CCATGTATAGATCAAATGAA+AGG + chr6.2:38097457-38097476 MS.gene03522:intron 30.0%
CCTTTCATTTGATCTATACA+TGG - chr6.2:38097460-38097479 None:intergenic 30.0%
CTACCAACCAAATTGAAAAA+TGG - chr6.2:38097726-38097745 None:intergenic 30.0%
CTCCTTAATTCTGAATCTAT+AGG - chr6.2:38097325-38097344 None:intergenic 30.0%
GACCTATAGATTCAGAATTA+AGG + chr6.2:38097320-38097339 MS.gene03522:intron 30.0%
TAGTGAAGTCTTGACTTAAT+TGG + chr6.2:38097278-38097297 MS.gene03522:intron 30.0%
TATTGCCAATAGTGATTAGA+TGG + chr6.2:38096775-38096794 MS.gene03522:intron 30.0%
TCATTTGATCTATACATGGT+AGG - chr6.2:38097456-38097475 None:intergenic 30.0%
TCGAAATAATCATAAGAGTG+GGG - chr6.2:38095269-38095288 None:intergenic 30.0%
TGTTTCCATCTAATCACTAT+TGG - chr6.2:38096783-38096802 None:intergenic 30.0%
TTCTGTTCAAAAACCAATCA+GGG - chr6.2:38096022-38096041 None:intergenic 30.0%
TTTCTGTTCAAAAACCAATC+AGG - chr6.2:38096023-38096042 None:intergenic 30.0%
TTTGTTGGATTTAAGGGATA+TGG + chr6.2:38095181-38095200 MS.gene03522:intron 30.0%
! ATGACTTCAATCAAAGGTAT+TGG + chr6.2:38094878-38094897 MS.gene03522:CDS 30.0%
! GAGAGTATAGATCAAATGAA+AGG + chr6.2:38097342-38097361 MS.gene03522:intron 30.0%
! TTCGAAATTTTCTGTTGAGA+TGG + chr6.2:38097752-38097771 MS.gene03522:intron 30.0%
! TTTGCTATGACTTCAATCAA+AGG + chr6.2:38094872-38094891 MS.gene03522:CDS 30.0%
!! CAACCATTTTTCAATTTGGT+TGG + chr6.2:38097720-38097739 MS.gene03522:intron 30.0%
!! TTGGTTTTTGAACAGAAAGA+AGG + chr6.2:38096025-38096044 MS.gene03522:CDS 30.0%
!!! ATTGTTTTGATTTTCAGAGC+TGG + chr6.2:38095930-38095949 MS.gene03522:intron 30.0%
!!! CTTTTTTGAGAAGATGTTTC+TGG + chr6.2:38097813-38097832 MS.gene03522:intron 30.0%
!!! GTCCTTTTGAGTTTTCTATT+TGG + chr6.2:38096958-38096977 MS.gene03522:intron 30.0%
!!! TCATCAATCCTTTGTTTTTC+TGG + chr6.2:38094963-38094982 MS.gene03522:intron 30.0%
!!! TTTTGAGTTTTCTATTTGGG+TGG + chr6.2:38096962-38096981 MS.gene03522:intron 30.0%
AAACTTAGCCTAACTGCAAT+GGG + chr6.2:38095802-38095821 MS.gene03522:intron 35.0%
AATAGATATGACTCATGGTG+TGG + chr6.2:38097428-38097447 MS.gene03522:intron 35.0%
ACATGGTAGAATTCACAACA+TGG - chr6.2:38097558-38097577 None:intergenic 35.0%
AGAAAGAAGGATTACAAGGA+TGG + chr6.2:38096038-38096057 MS.gene03522:CDS 35.0%
ATGCGAATATTAGACGAGTT+AGG + chr6.2:38097205-38097224 MS.gene03522:intron 35.0%
ATGTTGTGAATTCTACCATG+TGG + chr6.2:38097557-38097576 MS.gene03522:intron 35.0%
ATGTTTGTTCTGTAGTTTGG+TGG + chr6.2:38096159-38096178 MS.gene03522:intron 35.0%
CATGGTAGAATTCACAACAT+GGG - chr6.2:38097557-38097576 None:intergenic 35.0%
CTCATGTTTGTTCTGTAGTT+TGG + chr6.2:38096156-38096175 MS.gene03522:intron 35.0%
CTCTTTCAAATTAGGTGAGA+AGG - chr6.2:38096272-38096291 None:intergenic 35.0%
GAACAGAAAGAAGGATTACA+AGG + chr6.2:38096034-38096053 MS.gene03522:CDS 35.0%
GATATAATCATCACGAGGAA+TGG + chr6.2:38096396-38096415 MS.gene03522:intron 35.0%
GATGATTATATCCACGAGTT+AGG - chr6.2:38096388-38096407 None:intergenic 35.0%
GTAGTCGAATTGCTAAATGT+TGG + chr6.2:38097365-38097384 MS.gene03522:intron 35.0%
TAAGCTCAAATAAGCCAATC+CGG - chr6.2:38095521-38095540 None:intergenic 35.0%
TGCATGATAACATTAGAGAG+AGG + chr6.2:38097232-38097251 MS.gene03522:intron 35.0%
TTGTTGCTCAACTAGATCTA+GGG + chr6.2:38095490-38095509 MS.gene03522:intron 35.0%
! GATGTTTTCAAAAGCCATCT+TGG - chr6.2:38095642-38095661 None:intergenic 35.0%
! GGTACTCATTAGTATTGAAC+TGG + chr6.2:38096180-38096199 MS.gene03522:intron 35.0%
! TAACTGCAATGGGTTTACTT+GGG + chr6.2:38095812-38095831 MS.gene03522:intron 35.0%
! TCAGGTTGTTTCAAATCAAC+TGG + chr6.2:38096070-38096089 MS.gene03522:CDS 35.0%
!!! CAAGATTGTTTTGATCGTCA+AGG + chr6.2:38096492-38096511 MS.gene03522:intron 35.0%
AAAACATGTCTGTCCGACAT+TGG + chr6.2:38096443-38096462 MS.gene03522:intron 40.0%
AAACCTGGCTTAGACTCTTA+AGG - chr6.2:38097000-38097019 None:intergenic 40.0%
AAACTCAATGTTGCAGCGAT+GGG + chr6.2:38097165-38097184 MS.gene03522:intron 40.0%
AACCTGGCTTAGACTCTTAA+GGG - chr6.2:38096999-38097018 None:intergenic 40.0%
ATCAACTGGACATGAAGTTG+AGG + chr6.2:38096084-38096103 MS.gene03522:CDS 40.0%
CAAACTTAGCCTAACTGCAA+TGG + chr6.2:38095801-38095820 MS.gene03522:intron 40.0%
CAACATAACACGTATCTCAC+AGG - chr6.2:38097643-38097662 None:intergenic 40.0%
CAAGTAAACCCATTGCAGTT+AGG - chr6.2:38095813-38095832 None:intergenic 40.0%
CATAATGTTCTCCAACTCAG+CGG - chr6.2:38095967-38095986 None:intergenic 40.0%
CATGAAGTTGAGGGATGATT+TGG + chr6.2:38096094-38096113 MS.gene03522:CDS 40.0%
CATTGCAGTTAGGCTAAGTT+TGG - chr6.2:38095803-38095822 None:intergenic 40.0%
CTGATGTTGACATGAACAAG+AGG + chr6.2:38094933-38094952 MS.gene03522:CDS 40.0%
CTGTGAGATACGTGTTATGT+TGG + chr6.2:38097641-38097660 MS.gene03522:intron 40.0%
GAGATACGTGTTATGTTGGA+GGG + chr6.2:38097645-38097664 MS.gene03522:intron 40.0%
GAGGAAAAAAAGTCGAGAGA+GGG - chr6.2:38096527-38096546 None:intergenic 40.0%
GGTAGGAAACAGACATAAGT+TGG - chr6.2:38096859-38096878 None:intergenic 40.0%
GTAGTCGAATCGCTAAATGT+TGG + chr6.2:38097480-38097499 MS.gene03522:intron 40.0%
GTGATGAATTGTGCAGTCTT+TGG + chr6.2:38094778-38094797 MS.gene03522:intron 40.0%
GTGTTGAATACCAACGTTGA+TGG + chr6.2:38094833-38094852 MS.gene03522:CDS 40.0%
GTTGGAGAACATTATGACTG+TGG + chr6.2:38095971-38095990 MS.gene03522:CDS 40.0%
GTTGTTGCTCAACTAGATCT+AGG + chr6.2:38095489-38095508 MS.gene03522:intron 40.0%
TAAACTCAATGTTGCAGCGA+TGG + chr6.2:38097164-38097183 MS.gene03522:intron 40.0%
TCAACTGGACATGAAGTTGA+GGG + chr6.2:38096085-38096104 MS.gene03522:CDS 40.0%
TCGTGGATATAATCATCACG+AGG + chr6.2:38096391-38096410 MS.gene03522:intron 40.0%
TGAATTGTTTGCCTAACTCG+TGG + chr6.2:38096374-38096393 MS.gene03522:intron 40.0%
TGAGATACGTGTTATGTTGG+AGG + chr6.2:38097644-38097663 MS.gene03522:intron 40.0%
TGAGGAAAAAAAGTCGAGAG+AGG - chr6.2:38096528-38096547 None:intergenic 40.0%
! CTAACTGCAATGGGTTTACT+TGG + chr6.2:38095811-38095830 MS.gene03522:intron 40.0%
! GAGTTTTCTATTTGGGTGGT+TGG + chr6.2:38096966-38096985 MS.gene03522:intron 40.0%
! GTGGTTTAGCCTTTCTATGT+TGG + chr6.2:38096893-38096912 MS.gene03522:intron 40.0%
AAACCACATCATTAGCGTGC+AGG - chr6.2:38096880-38096899 None:intergenic 45.0%
ACAGGTCGGGATTCATTACA+TGG - chr6.2:38097609-38097628 None:intergenic 45.0%
AGCACGGATGATAAGTGCTT+AGG - chr6.2:38095750-38095769 None:intergenic 45.0%
ATCCCTTAAGAGTCTAAGCC+AGG + chr6.2:38096994-38097013 MS.gene03522:intron 45.0%
CAGGTCGGGATTCATTACAT+GGG - chr6.2:38097608-38097627 None:intergenic 45.0%
CCATCACAACTTACTCCACA+TGG - chr6.2:38097575-38097594 None:intergenic 45.0%
CCATGTGGAGTAAGTTGTGA+TGG + chr6.2:38097572-38097591 MS.gene03522:intron 45.0%
CCCAGTAATGTCTCAAACCT+CGG - chr6.2:38097904-38097923 None:intergenic 45.0%
CTTCTGCTTTCCATCAACGT+TGG - chr6.2:38094846-38094865 None:intergenic 45.0%
GAATTATGCAGGAATCACCG+AGG + chr6.2:38097884-38097903 MS.gene03522:intron 45.0%
TCAAATAAGCCAATCCGGAC+AGG - chr6.2:38095516-38095535 None:intergenic 45.0%
TGCAGCTTATAGCACAAGCA+CGG - chr6.2:38095766-38095785 None:intergenic 45.0%
! ACCGAGGTTTGAGACATTAC+TGG + chr6.2:38097900-38097919 MS.gene03522:CDS 45.0%
! CAAGGATGGCAAGTTTTCTC+AGG + chr6.2:38096052-38096071 MS.gene03522:CDS 45.0%
! CCGAGGTTTGAGACATTACT+GGG + chr6.2:38097901-38097920 MS.gene03522:CDS 45.0%
! CGAGGTTTGAGACATTACTG+GGG + chr6.2:38097902-38097921 MS.gene03522:CDS 45.0%
!! AAATTATTAAAATTATTTAG+AGG + chr6.2:38097390-38097409 MS.gene03522:intron 5.0%
!! ATATACAAAAAAAAAAAAAA+AGG - chr6.2:38097792-38097811 None:intergenic 5.0%
!! TATATATTTAACAAAATATT+TGG - chr6.2:38097531-38097550 None:intergenic 5.0%
!!! ACAAATTTTTTTAATTTTTT+AGG + chr6.2:38094735-38094754 MS.gene03522:intron 5.0%
!!! ATTGATTTTAAATATTTTTA+AGG + chr6.2:38095396-38095415 MS.gene03522:intron 5.0%
!!! CAAATTTTTTTAATTTTTTA+GGG + chr6.2:38094736-38094755 MS.gene03522:intron 5.0%
ACCAAGACTACTGGTCGTAG+AGG + chr6.2:38097947-38097966 MS.gene03522:CDS 50.0%
AGGTCACGTATCTCACAGGT+CGG - chr6.2:38097623-38097642 None:intergenic 50.0%
CACATCATTAGCGTGCAGGT+AGG - chr6.2:38096876-38096895 None:intergenic 50.0%
CAGGGACCTTGAATTGCCTA+GGG - chr6.2:38096004-38096023 None:intergenic 50.0%
CTACCTGCACGCTAATGATG+TGG + chr6.2:38096874-38096893 MS.gene03522:intron 50.0%
GACCTTGAATTGCCTAGGGT+TGG - chr6.2:38096000-38096019 None:intergenic 50.0%
GGCAATTCAAGGTCCCTGAT+TGG + chr6.2:38096006-38096025 MS.gene03522:CDS 50.0%
GGTCGTAGAGGAAAGACTGT+CGG + chr6.2:38097959-38097978 MS.gene03522:CDS 50.0%
TCACAGGTCACGTATCTCAC+AGG - chr6.2:38097627-38097646 None:intergenic 50.0%
TCAGGGACCTTGAATTGCCT+AGG - chr6.2:38096005-38096024 None:intergenic 50.0%
TCCTCTACGACCAGTAGTCT+TGG - chr6.2:38097951-38097970 None:intergenic 50.0%
TGAATTGACTGCCGCTGAGT+TGG + chr6.2:38095953-38095972 MS.gene03522:CDS 50.0%
TGCCAACCCTAGGCAATTCA+AGG + chr6.2:38095995-38096014 MS.gene03522:CDS 50.0%
! AACTAGATCTAGGGCCTGTC+CGG + chr6.2:38095499-38095518 MS.gene03522:intron 50.0%
! TGGAGCGCTTGAAGAAGATC+AGG + chr6.2:38096114-38096133 MS.gene03522:CDS 50.0%
CAGCGATGGGAATGTTGTGC+TGG + chr6.2:38097178-38097197 MS.gene03522:intron 55.0%
GGACAGCACACCAAGACTAC+TGG + chr6.2:38097938-38097957 MS.gene03522:CDS 55.0%
GGTCACGTATCTCACAGGTC+GGG - chr6.2:38097622-38097641 None:intergenic 55.0%
TGACTGTGGTTGCCAACCCT+AGG + chr6.2:38095985-38096004 MS.gene03522:CDS 55.0%
TGGTGTGCTGTCCACGAACA+CGG - chr6.2:38097931-38097950 None:intergenic 55.0%
TACTGGGGTCTCCGTGTTCG+TGG + chr6.2:38097917-38097936 MS.gene03522:CDS 60.0%
! GATCTAGGGCCTGTCCGGAT+TGG + chr6.2:38095504-38095523 MS.gene03522:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 38094680 38098000 38094680 ID=MS.gene03522
chr6.2 mRNA 38094680 38098000 38094680 ID=MS.gene03522.t1;Parent=MS.gene03522
chr6.2 exon 38094680 38094682 38094680 ID=MS.gene03522.t1.exon1;Parent=MS.gene03522.t1
chr6.2 CDS 38094680 38094682 38094680 ID=cds.MS.gene03522.t1;Parent=MS.gene03522.t1
chr6.2 exon 38094794 38094954 38094794 ID=MS.gene03522.t1.exon2;Parent=MS.gene03522.t1
chr6.2 CDS 38094794 38094954 38094794 ID=cds.MS.gene03522.t1;Parent=MS.gene03522.t1
chr6.2 exon 38095947 38096135 38095947 ID=MS.gene03522.t1.exon3;Parent=MS.gene03522.t1
chr6.2 CDS 38095947 38096135 38095947 ID=cds.MS.gene03522.t1;Parent=MS.gene03522.t1
chr6.2 exon 38097895 38098000 38097895 ID=MS.gene03522.t1.exon4;Parent=MS.gene03522.t1
chr6.2 CDS 38097895 38098000 38097895 ID=cds.MS.gene03522.t1;Parent=MS.gene03522.t1
Gene Sequence

>MS.gene03522

ATGGTACATCTCCATTTTCTTCAATTCAACAATCTCAATTTCAAATCCATTTTCTACAAATTTTTTTAATTTTTTAGGGATTTTTTGGTTTAATTTTTGTGATGAATTGTGCAGTCTTTGGTAGCGAACGAAGAGTTTCAACACATTCTGCGTGTGTTGAATACCAACGTTGATGGAAAGCAGAAGATACAGTTTGCTATGACTTCAATCAAAGGTATTGGAAGAAGATTTGCTAACATTTGTTGCAAGAAAGCTGATGTTGACATGAACAAGAGGTATTGTTTCATCAATCCTTTGTTTTTCTGGTTTTTTAGCTTTTGTTTTTGTTTTTGTCTTAAATTTTCTATTTGTTTTTTATAGTGAAATTGATATTGGTAATTTTTTTTCATGATTTATACTGTAATGGGTTTTAAATGTTTTCTAGGTTAATTAGTTTATTCATTATTGTTGTTATTTCTTAGAATTTGATGTCTAATTAGGTTTATACTTAAATGGATTTTTTTTGTTGGATTTAAGGGATATGGTTCGTCAGTGTAAAACAGTTTTACACTGAGATTCAATGAAAATCTATGATTTTGTCACACATCCCCACTCTTATGATTATTTCGAAATTAACTGTGACATGAAATTAATTAATTGAATGTCAGTGTAAAACTATTTTACACTGACAGTGTAAAACTATTTTAAAAATTCATGTTTTATACTGTAATTGTCTAATTGATTTTAAATATTTTTAAGGTTGATTATTTTTTATATTGTTTGGAATTTCATGTTTACTTAGGTATATACTGCAATGATTTTTTGTTGTTGTTGTTGCTCAACTAGATCTAGGGCCTGTCCGGATTGGCTTATTTGAGCTTATATACTAGTATAAGTTTTAAGAGGCATTTTGGGAGAATTTAATAAATCAGCTTATGACATTTTTTGTAAACTTTTAACAACTTATTTTTATAAGTTTTCCAAGATGGCTTTTGAAAACATCTTATAGCATATGCAAAAACAATTTATTTTTATTTTATCTTTTGCTGAAAAAATGGCTTATAAAAAATGGCTTATATAAGCTTATACCTAAGCACTTATCATCCGTGCTTGTGCTATAAGCTGCAAATAAGTTGTTTATCCAAACTTAGCCTAACTGCAATGGGTTTACTTGGGTTTTACTGCTTTGTGTAATTATGTTGTTTAATTAGGATTTCATGATTTATATTGAAATGGGTTTTTAGCAATTTTCAAGTTTAATTAGTTTAGTGATTGTTTTGATTTTCAGAGCTGGTGAATTGACTGCCGCTGAGTTGGAGAACATTATGACTGTGGTTGCCAACCCTAGGCAATTCAAGGTCCCTGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAGTTTTCTCAGGTTGTTTCAAATCAACTGGACATGAAGTTGAGGGATGATTTGGAGCGCTTGAAGAAGATCAGGTGATTATATTTGCATATTTCTCATGTTTGTTCTGTAGTTTGGTGGTACTCATTAGTATTGAACTGGATTCACTTTGATTTTTATTGATACAATCAGTTTTCTATTTTGATTTTCATTGTATTTCTTTACTTGCCTTCTCACCTAATTTGAAAGAGCTTTTGTTATTTATTTACGACTTTGGAAAGCTTTTGTTGATGCTATTGATTGTTTCTGTCCTTTTCATATTATAATAACGAATGAATTGTTTGCCTAACTCGTGGATATAATCATCACGAGGAATGGTACTTCTGATGAAGCATACTAAATAAAACATGTCTGTCCGACATTGGTTGTTTTTCTGATATAGATATCGAAACAAGATTGTTTTGATCGTCAAGGACACACTGACCCTCTCTCGACTTTTTTTCCTCAATTAACATTTTTCTGTTTCATTAGACAGATAGTTTATGTTTTGATTACACGTGCACACGTAATTATTTGAAAAAACAGACATGATTGAATGTTGATCTGTTACCACATCTGTAGTTTTTGTTTTGCCTTTACTCAATCAACATTTTTCTGTTTCATTAGACAAATAGTTTATATTTTGATTACATGTGACACATAATAATGGTCTGTTACCACATCTGTAGTTTATGTATTGCCAATAGTGATTAGATGGAAACACCTTTGTCATTGTTGTATTTGTGTCAGTGCTACATAGTTATATATGTTATCTTCCAACTTATGTCTGTTTCCTACCTGCACGCTAATGATGTGGTTTAGCCTTTCTATGTTGGATATTTTTTCTGTTTTTGGTCTTTTTCACCATTACAATTTTCGTCCTTTTGAGTTTTCTATTTGGGTGGTTGGACTTGATCCCTTAAGAGTCTAAGCCAGGTTTTATTGATCAGTTAAAATTTGATGATAAAAAAAATGTAAGTCAAGAGAATAATAAAAGATGATAAAAGACTAGACATTCCAAAAAAAAAACAAAAACAGATTTTATGTCTTCTCAATTCTGTTGTATGAGACATGTATACAAGAATAAACTCAATGTTGCAGCGATGGGAATGTTGTGCTGGATGAATGCGAATATTAGACGAGTTAGGATTTTGCATGATAACATTAGAGAGAGGTTTTAATATTACAAATTAAAAGATAGTGAAGTCTTGACTTAATTGGTTTGGTCATCTCTGTAAAAGACCTATAGATTCAGAATTAAGGAGAGTATAGATCAAATGAAAGGGTAGTCGAATTGCTAAATGTTGGCAAAATTATTAAAATTATTTAGAGGCCAAATATTTTGTTAAATAGATATGACTCATGGTGTGGATCCTACCATGTATAGATCAAATGAAAGGGTAGTCGAATCGCTAAATGTTGGCAAAACTATTAAAATTATTTAGAGGCCAAATATTTTGTTAAATATATATGACCCATGTTGTGAATTCTACCATGTGGAGTAAGTTGTGATGGTGTATTTTGTCCCATGTAATGAATCCCGACCTGTGAGATACGTGACCTGTGAGATACGTGTTATGTTGGAGGGTTTTTTCAACGACTATAAGCATGTTCAAATTAGTGTTGGTTTAAATCTTACACAACCATTTTTCAATTTGGTTGGTAGTTTGTTTTCGAAATTTTCTGTTGAGATGGCATGACTGCATCTGCCTTTTTTTTTTTTTTTGTATATACTTTTTTGAGAAGATGTTTCTGGCAATTGTATTTTATTGTCAGTATATTATAGATATTAATACTTCAATTTGAATTATGCAGGAATCACCGAGGTTTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAGCACACCAAGACTACTGGTCGTAGAGGAAAGACTGTCGGTGTCTCTAAGAAGCGTTGA
Protein sequence

>MS.gene03522.t1

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELTAAELENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR