Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80490.t1 | XP_013452021.1 | 100 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 1.90E-79 | 305.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80490.t1 | P34788 | 91.4 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 2.8e-76 | 285.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80490.t1 | G7IEW7 | 100.0 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 1.3e-79 | 305.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80490.t1 | MTR_6g043210 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.14e-112 | 314 |
| MS.gene80490.t1 | MTR_1g098170 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 6.70e-111 | 311 |
| MS.gene80490.t1 | MTR_1g098220 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 6.70e-111 | 311 |
| MS.gene80490.t1 | MTR_1g492710 | 96.575 | 146 | 5 | 0 | 1 | 146 | 794 | 939 | 2.86e-95 | 297 |
| MS.gene80490.t1 | MTR_1g098220 | 97.479 | 119 | 3 | 0 | 1 | 119 | 1 | 119 | 2.06e-83 | 241 |
| MS.gene80490.t1 | MTR_5g027650 | 93.137 | 102 | 7 | 0 | 39 | 140 | 11 | 112 | 7.18e-68 | 201 |
| MS.gene80490.t1 | MTR_5g027580 | 91.176 | 102 | 9 | 0 | 39 | 140 | 48 | 149 | 6.00e-67 | 200 |
| MS.gene80490.t1 | MTR_5g027670 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 2.50e-57 | 174 |
| MS.gene80490.t1 | MTR_5g027615 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 7.98e-57 | 172 |
| MS.gene80490.t1 | MTR_5g027605 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 7.98e-57 | 172 |
| MS.gene80490.t1 | MTR_5g027640 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 7.98e-57 | 172 |
| MS.gene80490.t1 | MTR_5g027600 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 7.98e-57 | 172 |
| MS.gene80490.t1 | MTR_1005s0010 | 91.860 | 86 | 7 | 0 | 55 | 140 | 2 | 87 | 2.48e-55 | 169 |
| MS.gene80490.t1 | MTR_4g015960 | 70.270 | 74 | 15 | 2 | 68 | 137 | 10 | 80 | 2.02e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80490.t1 | AT4G09800 | 91.447 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 1.91e-104 | 295 |
| MS.gene80490.t1 | AT1G34030 | 91.447 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 1.91e-104 | 295 |
| MS.gene80490.t1 | AT1G22780 | 91.447 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 1.91e-104 | 295 |
Find 31 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTGTTTCAAATCAAC+TGG | 0.336957 | 6.3:+37280936 | MS.gene80490:CDS |
| CATGAAGTTGAGGGATGATT+TGG | 0.348922 | 6.3:+37280960 | MS.gene80490:CDS |
| ACCGAGGTTTGAGACATTAC+TGG | 0.395796 | 6.3:+37282058 | MS.gene80490:CDS |
| ATGACTTCAATCAAAGGTAT+TGG | 0.407492 | 6.3:+37279882 | MS.gene80490:CDS |
| GGCAATTCAAGGTCCCTGAT+TGG | 0.439048 | 6.3:+37280872 | MS.gene80490:CDS |
| CCGAGGTTTGAGACATTACT+GGG | 0.449031 | 6.3:+37282059 | MS.gene80490:CDS |
| TGGAGCGCTTGAAGAAGATC+AGG | 0.487727 | 6.3:+37280980 | MS.gene80490:CDS |
| TACTGGGGTCTCCGTGTTCG+CGG | 0.490564 | 6.3:+37282075 | MS.gene80490:CDS |
| TGGTGTGCTGTCCGCGAACA+CGG | 0.498040 | 6.3:-37282086 | None:intergenic |
| GTGTTGAATACCAACGTTGA+TGG | 0.503977 | 6.3:+37279837 | MS.gene80490:CDS |
| TGCGAACCCTAGGCAATTCA+AGG | 0.508041 | 6.3:+37280861 | MS.gene80490:CDS |
| TCCTCTACGACCAGTAGTCT+TGG | 0.513650 | 6.3:-37282106 | None:intergenic |
| GAACAGAAAGAAGGATTACA+AGG | 0.525479 | 6.3:+37280900 | MS.gene80490:CDS |
| GGACAGCACACCAAGACTAC+TGG | 0.527200 | 6.3:+37282096 | MS.gene80490:CDS |
| TGACTGTGGTTGCGAACCCT+AGG | 0.543992 | 6.3:+37280851 | MS.gene80490:CDS |
| TGAATTGACTGCTGCCGAGT+TGG | 0.546579 | 6.3:+37280819 | MS.gene80490:CDS |
| TCAACTGGACATGAAGTTGA+GGG | 0.551353 | 6.3:+37280951 | MS.gene80490:CDS |
| ATCAACTGGACATGAAGTTG+AGG | 0.554008 | 6.3:+37280950 | MS.gene80490:CDS |
| CCCAGTAATGTCTCAAACCT+CGG | 0.554125 | 6.3:-37282059 | None:intergenic |
| TCAGGGACCTTGAATTGCCT+AGG | 0.557398 | 6.3:-37280868 | None:intergenic |
| AGAAAGAAGGATTACAAGGA+TGG | 0.565673 | 6.3:+37280904 | MS.gene80490:CDS |
| CTTCTGCTTTCCATCAACGT+TGG | 0.575809 | 6.3:-37279847 | None:intergenic |
| CAGGGACCTTGAATTGCCTA+GGG | 0.576444 | 6.3:-37280867 | None:intergenic |
| CTGATGTTGACATGAACAAG+AGG | 0.608795 | 6.3:+37279937 | MS.gene80490:CDS |
| TTTGCTATGACTTCAATCAA+AGG | 0.610699 | 6.3:+37279876 | MS.gene80490:CDS |
| AGTCATAATGTTCTCCAACT+CGG | 0.622426 | 6.3:-37280833 | None:intergenic |
| ACCAAGACTACTGGTCGTAG+AGG | 0.645367 | 6.3:+37282105 | MS.gene80490:CDS |
| GGTCGTAGAGGAAAGACTGT+CGG | 0.671409 | 6.3:+37282117 | MS.gene80490:CDS |
| CAATTATGCAGGAATCACCG+AGG | 0.718828 | 6.3:+37282042 | MS.gene80490:intron |
| GTTGGAGAACATTATGACTG+TGG | 0.726330 | 6.3:+37280837 | MS.gene80490:CDS |
| CGAGGTTTGAGACATTACTG+GGG | 0.796352 | 6.3:+37282060 | MS.gene80490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTACAAATTTTTTTA+GGG | + | chr6.3:37279739-37279758 | MS.gene80490:intron | 10.0% |
| !!! | TTATAATTTCATTTTTACTT+AGG | + | chr6.3:37280248-37280267 | MS.gene80490:intron | 10.0% |
| !! | CTAAAAAAATTTGTAGAAAA+TGG | - | chr6.3:37279740-37279759 | None:intergenic | 15.0% |
| !! | TAATTAGTTAAGTGATTATT+TGG | + | chr6.3:37280769-37280788 | MS.gene80490:intron | 15.0% |
| !! | TTCGTTATTATAATATGAAA+AGG | - | chr6.3:37281436-37281455 | None:intergenic | 15.0% |
| !!! | AAACAAAAAAATGTTGATTA+AGG | - | chr6.3:37281629-37281648 | None:intergenic | 15.0% |
| !!! | AATTTTTTTAGGGATTTTTT+TGG | + | chr6.3:37279749-37279768 | MS.gene80490:intron | 15.0% |
| !!! | ATTCGTATTTTTAATGAAAT+TGG | + | chr6.3:37280127-37280146 | MS.gene80490:intron | 15.0% |
| !!! | CATTTTCTACAAATTTTTTT+AGG | + | chr6.3:37279738-37279757 | MS.gene80490:intron | 15.0% |
| !!! | TTTTATGATTTATACTGTAA+TGG | + | chr6.3:37280048-37280067 | MS.gene80490:intron | 15.0% |
| !! | TTCATGATTTATACTGTAAT+GGG | + | chr6.3:37280174-37280193 | MS.gene80490:intron | 20.0% |
| !! | TTTCATGATTTATACTGTAA+TGG | + | chr6.3:37280173-37280192 | MS.gene80490:intron | 20.0% |
| !!! | ACAATAATAATTTTGGCAAA+CGG | + | chr6.3:37281685-37281704 | MS.gene80490:intron | 20.0% |
| !!! | ATTTTTAATGAAATTGGTAG+TGG | + | chr6.3:37280133-37280152 | MS.gene80490:intron | 20.0% |
| !!! | CAAGTTTATAATTAGTTTAG+TGG | + | chr6.3:37280210-37280229 | MS.gene80490:intron | 20.0% |
| !!! | GTTTTTTATGTTGTTTAACT+AGG | + | chr6.3:37280702-37280721 | MS.gene80490:intron | 20.0% |
| !!! | TTTTTATAAGTTTTCCAAGA+TGG | + | chr6.3:37280374-37280393 | MS.gene80490:intron | 20.0% |
| !!! | TTTTTTGTTGTTGGTAAATT+AGG | + | chr6.3:37280288-37280307 | MS.gene80490:intron | 20.0% |
| ! | AGATTTAAACTGACACTTAT+AGG | - | chr6.3:37281870-37281889 | None:intergenic | 25.0% |
| ! | ATATAAGCATCATGATGAAA+TGG | + | chr6.3:37281479-37281498 | MS.gene80490:intron | 25.0% |
| ! | ATTGAGATTGTTGAAGAAAA+TGG | - | chr6.3:37279710-37279729 | None:intergenic | 25.0% |
| ! | GATTTAAACTGACACTTATA+GGG | - | chr6.3:37281869-37281888 | None:intergenic | 25.0% |
| ! | TACTTCAATTTCAATTATGC+AGG | + | chr6.3:37282031-37282050 | MS.gene80490:intron | 25.0% |
| ! | TGTATACATTCAATCACTAT+TGG | - | chr6.3:37281758-37281777 | None:intergenic | 25.0% |
| ! | TTCATGATTTATGCTGAAAT+GGG | + | chr6.3:37280727-37280746 | MS.gene80490:intron | 25.0% |
| ! | TTTCATGATTTATGCTGAAA+TGG | + | chr6.3:37280726-37280745 | MS.gene80490:intron | 25.0% |
| !! | AAAACTTTTGTTGATGCTAT+TGG | + | chr6.3:37281400-37281419 | MS.gene80490:intron | 25.0% |
| !!! | TAAGTTTTGTTGGTGTATTT+TGG | + | chr6.3:37281824-37281843 | MS.gene80490:intron | 25.0% |
| !!! | TTGTTATTTGTTTACGTCTT+TGG | + | chr6.3:37281377-37281396 | MS.gene80490:intron | 25.0% |
| !!! | TTTTTGTTTCATTAGACAGA+TGG | + | chr6.3:37281640-37281659 | MS.gene80490:intron | 25.0% |
| AACTCTTTCACATTCACATT+AGG | - | chr6.3:37281356-37281375 | None:intergenic | 30.0% | |
| AATTGTCATTCTATACGGTT+TGG | + | chr6.3:37281112-37281131 | MS.gene80490:intron | 30.0% | |
| ACACGATTGTTTGATTGTTA+AGG | + | chr6.3:37281575-37281594 | MS.gene80490:intron | 30.0% | |
| ATCACTGATGATAAATGCTT+AGG | - | chr6.3:37280605-37280624 | None:intergenic | 30.0% | |
| CAAAACATAAACTACAGATG+TGG | - | chr6.3:37281735-37281754 | None:intergenic | 30.0% | |
| CACGATTGTTTGATTGTTAA+GGG | + | chr6.3:37281576-37281595 | MS.gene80490:intron | 30.0% | |
| CTACCAACAAAATTGAAGAA+TGG | - | chr6.3:37281900-37281919 | None:intergenic | 30.0% | |
| CTTAGGTTTATACTACAATG+AGG | + | chr6.3:37280265-37280284 | MS.gene80490:intron | 30.0% | |
| GAGCTAATTGTCATTCTATA+CGG | + | chr6.3:37281107-37281126 | MS.gene80490:intron | 30.0% | |
| GATTAAGGAAAGAAAGTTGA+GGG | - | chr6.3:37281614-37281633 | None:intergenic | 30.0% | |
| TGACAATAAAACAAAACGAC+AGG | - | chr6.3:37281993-37282012 | None:intergenic | 30.0% | |
| TGATTAAGGAAAGAAAGTTG+AGG | - | chr6.3:37281615-37281634 | None:intergenic | 30.0% | |
| TTCTGTTCAAAAACCAATCA+GGG | - | chr6.3:37280888-37280907 | None:intergenic | 30.0% | |
| TTTCTGTTCAAAAACCAATC+AGG | - | chr6.3:37280889-37280908 | None:intergenic | 30.0% | |
| ! | ATGACTTCAATCAAAGGTAT+TGG | + | chr6.3:37279882-37279901 | MS.gene80490:CDS | 30.0% |
| ! | CAACCATTCTTCAATTTTGT+TGG | + | chr6.3:37281894-37281913 | MS.gene80490:intron | 30.0% |
| ! | CACGTGCACAATAATAATTT+TGG | + | chr6.3:37281678-37281697 | MS.gene80490:intron | 30.0% |
| ! | TCAAGTTGTTTCAAATCAAC+TGG | + | chr6.3:37280936-37280955 | MS.gene80490:CDS | 30.0% |
| ! | TTGTTGGTAAATTAGGCTTA+GGG | + | chr6.3:37280295-37280314 | MS.gene80490:intron | 30.0% |
| ! | TTTGCTATGACTTCAATCAA+AGG | + | chr6.3:37279876-37279895 | MS.gene80490:CDS | 30.0% |
| !! | TTGGTTTTTGAACAGAAAGA+AGG | + | chr6.3:37280891-37280910 | MS.gene80490:CDS | 30.0% |
| !!! | ACAATGAGGTTTTTTGTTGT+TGG | + | chr6.3:37280279-37280298 | MS.gene80490:intron | 30.0% |
| !!! | GTTGGTAGTTAAGTTTGTTT+TGG | + | chr6.3:37281912-37281931 | MS.gene80490:intron | 30.0% |
| AAACGGAAGTTATTGAGTGT+TGG | + | chr6.3:37281702-37281721 | MS.gene80490:intron | 35.0% | |
| AAACTTAGCCTAACTGTGAT+GGG | + | chr6.3:37280657-37280676 | MS.gene80490:intron | 35.0% | |
| AAAGTAAACCCATCACAGTT+AGG | - | chr6.3:37280668-37280687 | None:intergenic | 35.0% | |
| AGAAAGAAGGATTACAAGGA+TGG | + | chr6.3:37280904-37280923 | MS.gene80490:CDS | 35.0% | |
| AGTCATAATGTTCTCCAACT+CGG | - | chr6.3:37280836-37280855 | None:intergenic | 35.0% | |
| ATGATGAAATGGTACTTCTC+AGG | + | chr6.3:37281490-37281509 | MS.gene80490:intron | 35.0% | |
| CCAGACACGTTTAATTAGTA+TGG | - | chr6.3:37281518-37281537 | None:intergenic | 35.0% | |
| CCATACTAATTAAACGTGTC+TGG | + | chr6.3:37281515-37281534 | MS.gene80490:intron | 35.0% | |
| GAACAGAAAGAAGGATTACA+AGG | + | chr6.3:37280900-37280919 | MS.gene80490:CDS | 35.0% | |
| GAATGAATTGTTTGCCTAAC+TGG | + | chr6.3:37281453-37281472 | MS.gene80490:intron | 35.0% | |
| TAAACTGACACTTATAGGGT+GGG | - | chr6.3:37281865-37281884 | None:intergenic | 35.0% | |
| TTAAACTGACACTTATAGGG+TGG | - | chr6.3:37281866-37281885 | None:intergenic | 35.0% | |
| TTGCATGTTTCTCGTTTGTT+CGG | + | chr6.3:37281157-37281176 | MS.gene80490:intron | 35.0% | |
| TTGGAAATTGTCTGTTGAGA+TGG | + | chr6.3:37281931-37281950 | MS.gene80490:intron | 35.0% | |
| ! | GTTGTTGGTAAATTAGGCTT+AGG | + | chr6.3:37280294-37280313 | MS.gene80490:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr6.3:37280536-37280555 | None:intergenic | 35.0% |
| !! | TAACTGTGATGGGTTTACTT+TGG | + | chr6.3:37280667-37280686 | MS.gene80490:intron | 35.0% |
| !!! | GCATTCGTTTTGATTTTCGT+TGG | + | chr6.3:37281217-37281236 | MS.gene80490:intron | 35.0% |
| !!! | TCTGTTTTGATTTTCAGAGC+TGG | + | chr6.3:37280796-37280815 | MS.gene80490:intron | 35.0% |
| AAGGAAAGAAAGTTGAGGGA+GGG | - | chr6.3:37281610-37281629 | None:intergenic | 40.0% | |
| AATTAGGCTTAGGGACTGTT+TGG | + | chr6.3:37280304-37280323 | MS.gene80490:intron | 40.0% | |
| ACCAACAAAACTTACTCCAC+AGG | - | chr6.3:37281818-37281837 | None:intergenic | 40.0% | |
| ATCAACTGGACATGAAGTTG+AGG | + | chr6.3:37280950-37280969 | MS.gene80490:CDS | 40.0% | |
| CAAACTTAGCCTAACTGTGA+TGG | + | chr6.3:37280656-37280675 | MS.gene80490:intron | 40.0% | |
| CATCACAGTTAGGCTAAGTT+TGG | - | chr6.3:37280658-37280677 | None:intergenic | 40.0% | |
| CATGAAGTTGAGGGATGATT+TGG | + | chr6.3:37280960-37280979 | MS.gene80490:CDS | 40.0% | |
| CCAACAAAACTTACTCCACA+GGG | - | chr6.3:37281817-37281836 | None:intergenic | 40.0% | |
| CTGATGTTGACATGAACAAG+AGG | + | chr6.3:37279937-37279956 | MS.gene80490:CDS | 40.0% | |
| GATGCTTATATCCACCAGTT+AGG | - | chr6.3:37281470-37281489 | None:intergenic | 40.0% | |
| GCTTATTTGAGCTTGTCTAC+TGG | + | chr6.3:37280331-37280350 | MS.gene80490:intron | 40.0% | |
| GTGATGAATTGTGCAGTCTT+TGG | + | chr6.3:37279782-37279801 | MS.gene80490:intron | 40.0% | |
| GTGTTGAATACCAACGTTGA+TGG | + | chr6.3:37279837-37279856 | MS.gene80490:CDS | 40.0% | |
| GTTGGAGAACATTATGACTG+TGG | + | chr6.3:37280837-37280856 | MS.gene80490:CDS | 40.0% | |
| TAAGGAAAGAAAGTTGAGGG+AGG | - | chr6.3:37281611-37281630 | None:intergenic | 40.0% | |
| TCAACTGGACATGAAGTTGA+GGG | + | chr6.3:37280951-37280970 | MS.gene80490:CDS | 40.0% | |
| TGAATTGTTTGCCTAACTGG+TGG | + | chr6.3:37281456-37281475 | MS.gene80490:intron | 40.0% | |
| ! | AGCTGTTTCAATAGCCATCT+TGG | - | chr6.3:37280391-37280410 | None:intergenic | 40.0% |
| !! | TCGTTTGTTCGGTAGTTTTG+TGG | + | chr6.3:37281168-37281187 | MS.gene80490:intron | 40.0% |
| ACAGGGTAGAATTCACAGCA+TGG | - | chr6.3:37281800-37281819 | None:intergenic | 45.0% | |
| ATGCTGTGAATTCTACCCTG+TGG | + | chr6.3:37281799-37281818 | MS.gene80490:intron | 45.0% | |
| CAATTATGCAGGAATCACCG+AGG | + | chr6.3:37282042-37282061 | MS.gene80490:intron | 45.0% | |
| CAGGGTAGAATTCACAGCAT+GGG | - | chr6.3:37281799-37281818 | None:intergenic | 45.0% | |
| CCCAGTAATGTCTCAAACCT+CGG | - | chr6.3:37282062-37282081 | None:intergenic | 45.0% | |
| CTTCTGCTTTCCATCAACGT+TGG | - | chr6.3:37279850-37279869 | None:intergenic | 45.0% | |
| TAAACGTGTCTGGTCGACAA+AGG | + | chr6.3:37281525-37281544 | MS.gene80490:intron | 45.0% | |
| TAGGGTGGGATTCACAACAT+TGG | - | chr6.3:37281851-37281870 | None:intergenic | 45.0% | |
| ! | ACCGAGGTTTGAGACATTAC+TGG | + | chr6.3:37282058-37282077 | MS.gene80490:CDS | 45.0% |
| ! | CCGAGGTTTGAGACATTACT+GGG | + | chr6.3:37282059-37282078 | MS.gene80490:CDS | 45.0% |
| ! | CGAGGTTTGAGACATTACTG+GGG | + | chr6.3:37282060-37282079 | MS.gene80490:CDS | 45.0% |
| !! | CCCTGTGGAGTAAGTTTTGT+TGG | + | chr6.3:37281814-37281833 | MS.gene80490:intron | 45.0% |
| ACCAAGACTACTGGTCGTAG+AGG | + | chr6.3:37282105-37282124 | MS.gene80490:CDS | 50.0% | |
| CAGGGACCTTGAATTGCCTA+GGG | - | chr6.3:37280870-37280889 | None:intergenic | 50.0% | |
| GGCAATTCAAGGTCCCTGAT+TGG | + | chr6.3:37280872-37280891 | MS.gene80490:CDS | 50.0% | |
| GGCTTAGGGACTGTTTGGAT+TGG | + | chr6.3:37280309-37280328 | MS.gene80490:intron | 50.0% | |
| GGTCGTAGAGGAAAGACTGT+CGG | + | chr6.3:37282117-37282136 | MS.gene80490:CDS | 50.0% | |
| TCAGGGACCTTGAATTGCCT+AGG | - | chr6.3:37280871-37280890 | None:intergenic | 50.0% | |
| TCCTCTACGACCAGTAGTCT+TGG | - | chr6.3:37282109-37282128 | None:intergenic | 50.0% | |
| TGAATTGACTGCTGCCGAGT+TGG | + | chr6.3:37280819-37280838 | MS.gene80490:CDS | 50.0% | |
| TGCGAACCCTAGGCAATTCA+AGG | + | chr6.3:37280861-37280880 | MS.gene80490:CDS | 50.0% | |
| ! | TGGAGCGCTTGAAGAAGATC+AGG | + | chr6.3:37280980-37280999 | MS.gene80490:CDS | 50.0% |
| GGACAGCACACCAAGACTAC+TGG | + | chr6.3:37282096-37282115 | MS.gene80490:CDS | 55.0% | |
| TGACTGTGGTTGCGAACCCT+AGG | + | chr6.3:37280851-37280870 | MS.gene80490:CDS | 55.0% | |
| TACTGGGGTCTCCGTGTTCG+CGG | + | chr6.3:37282075-37282094 | MS.gene80490:CDS | 60.0% | |
| TGGTGTGCTGTCCGCGAACA+CGG | - | chr6.3:37282089-37282108 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37279696 | 37282158 | 37279696 | ID=MS.gene80490 |
| chr6.3 | mRNA | 37279696 | 37282158 | 37279696 | ID=MS.gene80490.t1;Parent=MS.gene80490 |
| chr6.3 | exon | 37279696 | 37279698 | 37279696 | ID=MS.gene80490.t1.exon1;Parent=MS.gene80490.t1 |
| chr6.3 | CDS | 37279696 | 37279698 | 37279696 | ID=cds.MS.gene80490.t1;Parent=MS.gene80490.t1 |
| chr6.3 | exon | 37279798 | 37279958 | 37279798 | ID=MS.gene80490.t1.exon2;Parent=MS.gene80490.t1 |
| chr6.3 | CDS | 37279798 | 37279958 | 37279798 | ID=cds.MS.gene80490.t1;Parent=MS.gene80490.t1 |
| chr6.3 | exon | 37280813 | 37281001 | 37280813 | ID=MS.gene80490.t1.exon3;Parent=MS.gene80490.t1 |
| chr6.3 | CDS | 37280813 | 37281001 | 37280813 | ID=cds.MS.gene80490.t1;Parent=MS.gene80490.t1 |
| chr6.3 | exon | 37282053 | 37282158 | 37282053 | ID=MS.gene80490.t1.exon4;Parent=MS.gene80490.t1 |
| chr6.3 | CDS | 37282053 | 37282158 | 37282053 | ID=cds.MS.gene80490.t1;Parent=MS.gene80490.t1 |
| Gene Sequence |
| Protein sequence |
