Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006122.t1 | XP_003592049.1 | 100 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 1.40E-79 | 305.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006122.t1 | P34788 | 92.8 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 3.3e-77 | 288.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006122.t1 | B7FMJ8 | 100.0 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 1.0e-79 | 305.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006122.t1 | MTR_1g098170 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 6.47e-112 | 314 |
MS.gene006122.t1 | MTR_1g098220 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 6.47e-112 | 314 |
MS.gene006122.t1 | MTR_6g043210 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 6.70e-111 | 311 |
MS.gene006122.t1 | MTR_1g492710 | 97.945 | 146 | 3 | 0 | 1 | 146 | 794 | 939 | 1.21e-97 | 303 |
MS.gene006122.t1 | MTR_1g098220 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.71e-84 | 243 |
MS.gene006122.t1 | MTR_5g027650 | 95.098 | 102 | 5 | 0 | 39 | 140 | 11 | 112 | 7.93e-69 | 203 |
MS.gene006122.t1 | MTR_5g027580 | 93.137 | 102 | 7 | 0 | 39 | 140 | 48 | 149 | 7.08e-68 | 202 |
MS.gene006122.t1 | MTR_5g027670 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 2.79e-58 | 176 |
MS.gene006122.t1 | MTR_5g027615 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.00e-58 | 175 |
MS.gene006122.t1 | MTR_5g027605 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.00e-58 | 175 |
MS.gene006122.t1 | MTR_5g027640 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.00e-58 | 175 |
MS.gene006122.t1 | MTR_5g027600 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.00e-58 | 175 |
MS.gene006122.t1 | MTR_1005s0010 | 94.186 | 86 | 5 | 0 | 55 | 140 | 2 | 87 | 2.51e-56 | 171 |
MS.gene006122.t1 | MTR_4g015960 | 70.270 | 74 | 15 | 2 | 68 | 137 | 10 | 80 | 2.32e-27 | 106 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006122.t1 | AT4G09800 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.89e-105 | 298 |
MS.gene006122.t1 | AT1G34030 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.89e-105 | 298 |
MS.gene006122.t1 | AT1G22780 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.89e-105 | 298 |
Find 36 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGAAGTTGAGAGATGATT+TGG | 0.279609 | 1.1:+70542191 | MS.gene006122:CDS |
CAACTTCATGTCGAGTTGAT+TGG | 0.309472 | 1.1:-70542178 | None:intergenic |
TCCCCTGCGGCCTGTAGTCT+TGG | 0.394682 | 1.1:-70543238 | None:intergenic |
TTCTGTTATGCAGTAATCAC+CGG | 0.438670 | 1.1:+70543172 | MS.gene006122:intron |
TACTGGGGCCTTCGTGTTCG+TGG | 0.457512 | 1.1:+70543207 | MS.gene006122:CDS |
TGATTGAGGTCATTGCGAAC+TGG | 0.463060 | 1.1:-70541805 | None:intergenic |
CCGGGGTTTGAGACACTACT+GGG | 0.483703 | 1.1:+70543191 | MS.gene006122:CDS |
GTTCGCAATGACCTCAATCA+AGG | 0.484324 | 1.1:+70541808 | MS.gene006122:CDS |
CAAGGATGGCAAATTCTCTC+AGG | 0.484690 | 1.1:+70542149 | MS.gene006122:CDS |
ACCGGGGTTTGAGACACTAC+TGG | 0.492415 | 1.1:+70543190 | MS.gene006122:CDS |
ATGACCTCAATCAAGGGTAT+TGG | 0.493197 | 1.1:+70541815 | MS.gene006122:CDS |
GTCAATTCAAGGTTCCAGAT+TGG | 0.495981 | 1.1:+70542103 | MS.gene006122:CDS |
TGGAGAGACTCAAGAAGATC+CGG | 0.512286 | 1.1:+70542211 | MS.gene006122:CDS |
TGCAAATCCTCGTCAATTCA+AGG | 0.522315 | 1.1:+70542092 | MS.gene006122:CDS |
CCCAGTAGTGTCTCAAACCC+CGG | 0.525189 | 1.1:-70543191 | None:intergenic |
GAACAGAAAGAAGGATTACA+AGG | 0.525479 | 1.1:+70542131 | MS.gene006122:CDS |
TGATGTGTTATAGTCTTTGG+TGG | 0.546379 | 1.1:+70541718 | MS.gene006122:intron |
TGAATTGAGTGCTGCAGAGT+TGG | 0.553099 | 1.1:+70542050 | MS.gene006122:CDS |
AGAAAGAAGGATTACAAGGA+TGG | 0.565673 | 1.1:+70542135 | MS.gene006122:CDS |
GGTCAGCATACCAAGACTAC+AGG | 0.569467 | 1.1:+70543228 | MS.gene006122:CDS |
TACCAAGACTACAGGCCGCA+GGG | 0.580402 | 1.1:+70543236 | MS.gene006122:CDS |
CCTACCAATACCCTTGATTG+AGG | 0.590405 | 1.1:-70541819 | None:intergenic |
ATACCAAGACTACAGGCCGC+AGG | 0.594524 | 1.1:+70543235 | MS.gene006122:CDS |
TCTGTTATGCAGTAATCACC+GGG | 0.594587 | 1.1:+70543173 | MS.gene006122:intron |
CTGATGTTGACATGAACAAG+AGG | 0.595729 | 1.1:+70541870 | MS.gene006122:CDS |
GGCCGCAGGGGAAAGACTGT+TGG | 0.608087 | 1.1:+70543249 | MS.gene006122:CDS |
GTTGGATAATATTATGACAG+TGG | 0.620536 | 1.1:+70542068 | MS.gene006122:CDS |
TTCGCAATGACCTCAATCAA+GGG | 0.622158 | 1.1:+70541809 | MS.gene006122:CDS |
CCTCAATCAAGGGTATTGGT+AGG | 0.631523 | 1.1:+70541819 | MS.gene006122:CDS |
GTGTTGAACACAAATGTCGA+TGG | 0.634706 | 1.1:+70541770 | MS.gene006122:CDS |
ACCAAGACTACAGGCCGCAG+GGG | 0.654823 | 1.1:+70543237 | MS.gene006122:CDS |
TCTGGAACCTTGAATTGACG+AGG | 0.669518 | 1.1:-70542099 | None:intergenic |
CTGTTATGCAGTAATCACCG+GGG | 0.730953 | 1.1:+70543174 | MS.gene006122:intron |
TATGCTGACCACGAACACGA+AGG | 0.739225 | 1.1:-70543215 | None:intergenic |
CACCAACAGTCTTTCCCCTG+CGG | 0.740988 | 1.1:-70543251 | None:intergenic |
CGGGGTTTGAGACACTACTG+GGG | 0.755067 | 1.1:+70543192 | MS.gene006122:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTCAATTCAATGATATAA+TGG | + | chr1.1:70543095-70543114 | MS.gene006122:intron | 15.0% |
!! | TTCTGTATTCAATAATAAAA+TGG | + | chr1.1:70543038-70543057 | MS.gene006122:intron | 15.0% |
!! | TTTGAGTAGTAAAAAAATAA+TGG | - | chr1.1:70543018-70543037 | None:intergenic | 15.0% |
!!! | ATTTTTGTTGTTCAAATTAA+TGG | + | chr1.1:70541930-70541949 | MS.gene006122:intron | 15.0% |
!!! | GGTTTTTTTTTTTTTTTTGT+TGG | + | chr1.1:70542011-70542030 | MS.gene006122:intron | 15.0% |
!!! | TTTTTGTTGTTCAAATTAAT+GGG | + | chr1.1:70541931-70541950 | MS.gene006122:intron | 15.0% |
!!! | TTTTTTGTTGGATTTATTTA+GGG | + | chr1.1:70542023-70542042 | MS.gene006122:intron | 15.0% |
!!! | TTTTTTTGTTGGATTTATTT+AGG | + | chr1.1:70542022-70542041 | MS.gene006122:intron | 15.0% |
!! | AATAAGATGAAAACAGTTTA+TGG | + | chr1.1:70542908-70542927 | MS.gene006122:intron | 20.0% |
!! | AATAATAAAATGGATGTATG+TGG | + | chr1.1:70543048-70543067 | MS.gene006122:intron | 20.0% |
!! | AATACATAGTAAAAAATGCA+AGG | - | chr1.1:70542726-70542745 | None:intergenic | 20.0% |
!! | AGTTTAAATAAATCCTATCT+GGG | + | chr1.1:70542988-70543007 | MS.gene006122:intron | 20.0% |
!! | ATCATCTTTATAGTTAACAA+AGG | - | chr1.1:70542274-70542293 | None:intergenic | 20.0% |
!! | ATGATATTCATGTTGATATA+GGG | + | chr1.1:70542763-70542782 | MS.gene006122:intron | 20.0% |
!! | TAGTTTAAATAAATCCTATC+TGG | + | chr1.1:70542987-70543006 | MS.gene006122:intron | 20.0% |
!! | TATGATATTCATGTTGATAT+AGG | + | chr1.1:70542762-70542781 | MS.gene006122:intron | 20.0% |
!!! | CAATAAAATTTTAGACTGTT+TGG | + | chr1.1:70542813-70542832 | MS.gene006122:intron | 20.0% |
!!! | TATTTTTGATGTTGTTGAAA+TGG | + | chr1.1:70541990-70542009 | MS.gene006122:intron | 20.0% |
! | ACAGTTTAATTAAGCACTTA+TGG | + | chr1.1:70542840-70542859 | MS.gene006122:intron | 25.0% |
! | GAAAACAAAATACAAGTCAT+TGG | - | chr1.1:70542675-70542694 | None:intergenic | 25.0% |
!! | TATGATTTTTAAACGTGAGA+TGG | - | chr1.1:70541972-70541991 | None:intergenic | 25.0% |
!!! | AATGATATAATGGATGTATG+TGG | + | chr1.1:70543105-70543124 | MS.gene006122:intron | 25.0% |
!!! | ACATTTTAACACTACTATGT+AGG | + | chr1.1:70542331-70542350 | MS.gene006122:intron | 25.0% |
!!! | ACTTGTATTTTGTTTTCTCT+TGG | + | chr1.1:70542678-70542697 | MS.gene006122:intron | 25.0% |
AATCAAATGTTTCCCATAAG+CGG | + | chr1.1:70542605-70542624 | MS.gene006122:intron | 30.0% | |
AGATGTAGTAGTAAGATGAT+AGG | + | chr1.1:70542367-70542386 | MS.gene006122:intron | 30.0% | |
AGTGTTTGAAAATAGAACAG+TGG | + | chr1.1:70542558-70542577 | MS.gene006122:intron | 30.0% | |
ATGAAAACAGTTTATGGACA+TGG | + | chr1.1:70542914-70542933 | MS.gene006122:intron | 30.0% | |
ATTTGCATAAGCAAACTGTT+TGG | - | chr1.1:70542963-70542982 | None:intergenic | 30.0% | |
CTGTTATTCAAACACTATCA+AGG | - | chr1.1:70542438-70542457 | None:intergenic | 30.0% | |
GTGTTTGAAAATAGAACAGT+GGG | + | chr1.1:70542559-70542578 | MS.gene006122:intron | 30.0% | |
GTTGGATAATATTATGACAG+TGG | + | chr1.1:70542068-70542087 | MS.gene006122:CDS | 30.0% | |
TTGTGATGTGTTATAGTCTT+TGG | + | chr1.1:70541715-70541734 | MS.gene006122:intron | 30.0% | |
TTTCTGTTCAAAAACCAATC+TGG | - | chr1.1:70542120-70542139 | None:intergenic | 30.0% | |
TTTGCATAAGCAAACTGTTT+GGG | - | chr1.1:70542962-70542981 | None:intergenic | 30.0% | |
!! | TTGGTTTTTGAACAGAAAGA+AGG | + | chr1.1:70542122-70542141 | MS.gene006122:CDS | 30.0% |
!!! | CTCAGTTGGTTTTTTAGTAT+AGG | + | chr1.1:70542299-70542318 | MS.gene006122:intron | 30.0% |
AAAGATGATTCTCACTCAGT+TGG | + | chr1.1:70542285-70542304 | MS.gene006122:intron | 35.0% | |
ACAATGAAGTAGCATCTTAC+CGG | - | chr1.1:70542233-70542252 | None:intergenic | 35.0% | |
ACAGAACGAGAATTCACTAT+TGG | + | chr1.1:70542454-70542473 | MS.gene006122:intron | 35.0% | |
ACTAATAACCATTGCTTCGA+TGG | + | chr1.1:70542390-70542409 | MS.gene006122:intron | 35.0% | |
AGAAAGAAGGATTACAAGGA+TGG | + | chr1.1:70542135-70542154 | MS.gene006122:CDS | 35.0% | |
ATGGATGTATGTGGAGAAAT+TGG | + | chr1.1:70543114-70543133 | MS.gene006122:intron | 35.0% | |
CATGAAGTTGAGAGATGATT+TGG | + | chr1.1:70542191-70542210 | MS.gene006122:CDS | 35.0% | |
GAACAGAAAGAAGGATTACA+AGG | + | chr1.1:70542131-70542150 | MS.gene006122:CDS | 35.0% | |
GTGATTACTGCATAACAGAA+AGG | - | chr1.1:70543172-70543191 | None:intergenic | 35.0% | |
TGATGTGTTATAGTCTTTGG+TGG | + | chr1.1:70541718-70541737 | MS.gene006122:intron | 35.0% | |
TGGATGTATGTGGAGAAATT+GGG | + | chr1.1:70543115-70543134 | MS.gene006122:intron | 35.0% | |
TTCTGTTATGCAGTAATCAC+CGG | + | chr1.1:70543172-70543191 | MS.gene006122:intron | 35.0% | |
TTGCATAAGCAAACTGTTTG+GGG | - | chr1.1:70542961-70542980 | None:intergenic | 35.0% | |
! | TTGTTGGATTTATTTAGGGC+TGG | + | chr1.1:70542027-70542046 | MS.gene006122:intron | 35.0% |
AAATAATGGCATGCCCAGAT+AGG | - | chr1.1:70543004-70543023 | None:intergenic | 40.0% | |
ATAACCATTGCTTCGATGGT+TGG | + | chr1.1:70542394-70542413 | MS.gene006122:intron | 40.0% | |
CTGATGTTGACATGAACAAG+AGG | + | chr1.1:70541870-70541889 | MS.gene006122:CDS | 40.0% | |
GAATTGGACCAAAAAGTAGC+TGG | + | chr1.1:70542642-70542661 | MS.gene006122:intron | 40.0% | |
GGAAATACGGGCAATAGAAT+TGG | + | chr1.1:70542626-70542645 | MS.gene006122:intron | 40.0% | |
GTCAATTCAAGGTTCCAGAT+TGG | + | chr1.1:70542103-70542122 | MS.gene006122:CDS | 40.0% | |
GTGTTGAACACAAATGTCGA+TGG | + | chr1.1:70541770-70541789 | MS.gene006122:CDS | 40.0% | |
GTTTCCCATAAGCGGAAATA+CGG | + | chr1.1:70542613-70542632 | MS.gene006122:intron | 40.0% | |
TATGTGGAGAAATTGGGCAT+TGG | + | chr1.1:70543121-70543140 | MS.gene006122:intron | 40.0% | |
TCTGTTATGCAGTAATCACC+GGG | + | chr1.1:70543173-70543192 | MS.gene006122:intron | 40.0% | |
TGCAAATCCTCGTCAATTCA+AGG | + | chr1.1:70542092-70542111 | MS.gene006122:CDS | 40.0% | |
TTCGCAATGACCTCAATCAA+GGG | + | chr1.1:70541809-70541828 | MS.gene006122:CDS | 40.0% | |
TTTCCCATAAGCGGAAATAC+GGG | + | chr1.1:70542614-70542633 | MS.gene006122:intron | 40.0% | |
! | ATGACCTCAATCAAGGGTAT+TGG | + | chr1.1:70541815-70541834 | MS.gene006122:CDS | 40.0% |
!! | CAACTTCATGTCGAGTTGAT+TGG | - | chr1.1:70542181-70542200 | None:intergenic | 40.0% |
!!! | GATAAGAGCCAGCTACTTTT+TGG | - | chr1.1:70542653-70542672 | None:intergenic | 40.0% |
ACACGATCAAAGCAATGCAG+TGG | - | chr1.1:70542516-70542535 | None:intergenic | 45.0% | |
ATTGCCCGTATTTCCGCTTA+TGG | - | chr1.1:70542621-70542640 | None:intergenic | 45.0% | |
CAAGGATGGCAAATTCTCTC+AGG | + | chr1.1:70542149-70542168 | MS.gene006122:CDS | 45.0% | |
CCTACCAATACCCTTGATTG+AGG | - | chr1.1:70541822-70541841 | None:intergenic | 45.0% | |
CTGTTATGCAGTAATCACCG+GGG | + | chr1.1:70543174-70543193 | MS.gene006122:intron | 45.0% | |
GTTCGCAATGACCTCAATCA+AGG | + | chr1.1:70541808-70541827 | MS.gene006122:CDS | 45.0% | |
TGATTGAGGTCATTGCGAAC+TGG | - | chr1.1:70541808-70541827 | None:intergenic | 45.0% | |
TGGAGAGACTCAAGAAGATC+CGG | + | chr1.1:70542211-70542230 | MS.gene006122:CDS | 45.0% | |
TTGCCCGTATTTCCGCTTAT+GGG | - | chr1.1:70542620-70542639 | None:intergenic | 45.0% | |
! | TCTGGAACCTTGAATTGACG+AGG | - | chr1.1:70542102-70542121 | None:intergenic | 45.0% |
! | TGAATTGAGTGCTGCAGAGT+TGG | + | chr1.1:70542050-70542069 | MS.gene006122:CDS | 45.0% |
!! | CCTCAATCAAGGGTATTGGT+AGG | + | chr1.1:70541819-70541838 | MS.gene006122:CDS | 45.0% |
AGCACCAACCATCGAAGCAA+TGG | - | chr1.1:70542401-70542420 | None:intergenic | 50.0% | |
CGATCAAAGCAATGCAGTGG+TGG | - | chr1.1:70542513-70542532 | None:intergenic | 50.0% | |
GGTCAGCATACCAAGACTAC+AGG | + | chr1.1:70543228-70543247 | MS.gene006122:CDS | 50.0% | |
TATGCTGACCACGAACACGA+AGG | - | chr1.1:70543218-70543237 | None:intergenic | 50.0% | |
!! | TGGAGAAATTGGGCATTGGC+TGG | + | chr1.1:70543125-70543144 | MS.gene006122:intron | 50.0% |
ATACCAAGACTACAGGCCGC+AGG | + | chr1.1:70543235-70543254 | MS.gene006122:CDS | 55.0% | |
CACCAACAGTCTTTCCCCTG+CGG | - | chr1.1:70543254-70543273 | None:intergenic | 55.0% | |
CCCAGTAGTGTCTCAAACCC+CGG | - | chr1.1:70543194-70543213 | None:intergenic | 55.0% | |
TACCAAGACTACAGGCCGCA+GGG | + | chr1.1:70543236-70543255 | MS.gene006122:CDS | 55.0% | |
! | ACCGGGGTTTGAGACACTAC+TGG | + | chr1.1:70543190-70543209 | MS.gene006122:CDS | 55.0% |
! | ATGCAGTGGTGGTGCATCAG+CGG | - | chr1.1:70542502-70542521 | None:intergenic | 55.0% |
! | CCGGGGTTTGAGACACTACT+GGG | + | chr1.1:70543191-70543210 | MS.gene006122:CDS | 55.0% |
! | CGGGGTTTGAGACACTACTG+GGG | + | chr1.1:70543192-70543211 | MS.gene006122:CDS | 55.0% |
ACCAAGACTACAGGCCGCAG+GGG | + | chr1.1:70543237-70543256 | MS.gene006122:CDS | 60.0% | |
TACTGGGGCCTTCGTGTTCG+TGG | + | chr1.1:70543207-70543226 | MS.gene006122:CDS | 60.0% | |
GGCCGCAGGGGAAAGACTGT+TGG | + | chr1.1:70543249-70543268 | MS.gene006122:CDS | 65.0% | |
TCCCCTGCGGCCTGTAGTCT+TGG | - | chr1.1:70543241-70543260 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 70541645 | 70543290 | 70541645 | ID=MS.gene006122 |
chr1.1 | mRNA | 70541645 | 70543290 | 70541645 | ID=MS.gene006122.t1;Parent=MS.gene006122 |
chr1.1 | exon | 70541645 | 70541647 | 70541645 | ID=MS.gene006122.t1.exon1;Parent=MS.gene006122.t1 |
chr1.1 | CDS | 70541645 | 70541647 | 70541645 | ID=cds.MS.gene006122.t1;Parent=MS.gene006122.t1 |
chr1.1 | exon | 70541731 | 70541891 | 70541731 | ID=MS.gene006122.t1.exon2;Parent=MS.gene006122.t1 |
chr1.1 | CDS | 70541731 | 70541891 | 70541731 | ID=cds.MS.gene006122.t1;Parent=MS.gene006122.t1 |
chr1.1 | exon | 70542044 | 70542232 | 70542044 | ID=MS.gene006122.t1.exon3;Parent=MS.gene006122.t1 |
chr1.1 | CDS | 70542044 | 70542232 | 70542044 | ID=cds.MS.gene006122.t1;Parent=MS.gene006122.t1 |
chr1.1 | exon | 70543185 | 70543290 | 70543185 | ID=MS.gene006122.t1.exon4;Parent=MS.gene006122.t1 |
chr1.1 | CDS | 70543185 | 70543290 | 70543185 | ID=cds.MS.gene006122.t1;Parent=MS.gene006122.t1 |
Gene Sequence |
Protein sequence |