AlfalfaGEDB | MS.gene006126

M. sativa cultivar XinJiangDaYe / MS.gene006126

KEGG: K02964
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00416.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006126.t1	XP_003592049.1	100	152	0	0	1	152	1	152	1.40E-79	305.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006126.t1	P34788	92.8	152	11	0	1	152	1	152	3.3e-77	288.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006126.t1	B7FMJ8	100.0	152	0	0	1	152	1	152	1.0e-79	305.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene42236	MS.gene006126	PPI
MS.gene006126	MS.gene39902	PPI
MS.gene27648	MS.gene006126	PPI
MS.gene006126	MS.gene03522	PPI
MS.gene006126	MS.gene60717	PPI
MS.gene006126	MS.gene88892	PPI
MS.gene006126	MS.gene054292	PPI
MS.gene006126	MS.gene073888	PPI
MS.gene006126	MS.gene048789	PPI
MS.gene53517	MS.gene006126	PPI
MS.gene003409	MS.gene006126	PPI
MS.gene006126	MS.gene053443	PPI
MS.gene006126	MS.gene006122	PPI
MS.gene006126	MS.gene49338	PPI
MS.gene28960	MS.gene006126	PPI
MS.gene006126	MS.gene83444	PPI
MS.gene006126	MS.gene006123	PPI
MS.gene006126	MS.gene023799	PPI
MS.gene006126	MS.gene52173	PPI
MS.gene006126	MS.gene72768	PPI
MS.gene006126	MS.gene052272	PPI
MS.gene006126	MS.gene80490	PPI
MS.gene006126	MS.gene020509	PPI
MS.gene006126	MS.gene72163	PPI
MS.gene006126	MS.gene070323	PPI
MS.gene006126	MS.gene015671	PPI
MS.gene006126	MS.gene020507	PPI
MS.gene006126	MS.gene60716	PPI
MS.gene052666	MS.gene006126	PPI
MS.gene006126	MS.gene82426	PPI
MS.gene006126	MS.gene028153	PPI
MS.gene006126	MS.gene97614	PPI
MS.gene006126	MS.gene030418	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006126.t1	MTR_1g098170	100.000	152	0	0	1	152	1	152	6.47e-112	314
MS.gene006126.t1	MTR_1g098220	100.000	152	0	0	1	152	1	152	6.47e-112	314
MS.gene006126.t1	MTR_6g043210	98.684	152	2	0	1	152	1	152	6.70e-111	311
MS.gene006126.t1	MTR_1g492710	97.945	146	3	0	1	146	794	939	1.21e-97	303
MS.gene006126.t1	MTR_1g098220	99.160	119	1	0	1	119	1	119	2.71e-84	243
MS.gene006126.t1	MTR_5g027650	95.098	102	5	0	39	140	11	112	7.93e-69	203
MS.gene006126.t1	MTR_5g027580	93.137	102	7	0	39	140	48	149	7.08e-68	202
MS.gene006126.t1	MTR_5g027670	94.382	89	5	0	52	140	1	89	2.79e-58	176
MS.gene006126.t1	MTR_5g027615	94.382	89	5	0	52	140	1	89	7.00e-58	175
MS.gene006126.t1	MTR_5g027605	94.382	89	5	0	52	140	1	89	7.00e-58	175
MS.gene006126.t1	MTR_5g027640	94.382	89	5	0	52	140	1	89	7.00e-58	175
MS.gene006126.t1	MTR_5g027600	94.382	89	5	0	52	140	1	89	7.00e-58	175
MS.gene006126.t1	MTR_1005s0010	94.186	86	5	0	55	140	2	87	2.51e-56	171
MS.gene006126.t1	MTR_4g015960	70.270	74	15	2	68	137	10	80	2.32e-27	106

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006126.t1	AT4G09800	92.763	152	11	1	152	1	152	1.89e-105	298
MS.gene006126.t1	AT1G34030	92.763	152	11	1	152	1	152	1.89e-105	298
MS.gene006126.t1	AT1G22780	92.763	152	11	1	152	1	152	1.89e-105	298

Find 0 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAAGTTAAAAAAAATTATAA+TGG	-	10710:3136-3155	None:intergenic	10.0%
!!!	ATTTTTGTTGTTAAAATTAA+TGG	+	10710:2144-2163	MS.gene006126:intron	10.0%
!!!	TTTTTGTTGTTAAAATTAAT+GGG	+	10710:2145-2164	MS.gene006126:intron	10.0%
!!	GTTTAAATAAATATCAATCT+AGG	+	10710:3106-3125	MS.gene006126:intron	15.0%
!!	TTTGATATTATTGTTGAAAT+GGG	+	10710:2208-2227	MS.gene006126:intron	15.0%
!!!	TTTTGATATTATTGTTGAAA+TGG	+	10710:2207-2226	MS.gene006126:intron	15.0%
!!	TATTAATTCTATCATCTTTC+TGG	-	10710:2518-2537	None:intergenic	20.0%
!!!	AAATGACTGATTTATAAAAG+TGG	-	10710:2128-2147	None:intergenic	20.0%
!!!	AATGACTGATTTATAAAAGT+GGG	-	10710:2127-2146	None:intergenic	20.0%
!!!	ATAATTATTGCTTTGATAGT+TGG	+	10710:2632-2651	MS.gene006126:intron	20.0%
!!!	TTCTGTTTTCAGTAATATAA+TGG	+	10710:3161-3180	MS.gene006126:intron	20.0%
!!!	TTTGTTGTTGGATTTTTTTA+GGG	+	10710:2236-2255	MS.gene006126:intron	20.0%
!!!	TTTTGTTGTTGGATTTTTTT+AGG	+	10710:2235-2254	MS.gene006126:intron	20.0%
!	AAATAAATATCAATCTAGGC+AGG	+	10710:3110-3129	MS.gene006126:intron	25.0%
!	AGTGTTTGAATAATAGAATG+AGG	+	10710:2696-2715	MS.gene006126:intron	25.0%
!	ATAAGATGAAAACAGTTGAT+GGG	+	10710:3025-3044	MS.gene006126:intron	25.0%
!	ATTAAAACTGGTTAGAAAAG+TGG	-	10710:2773-2792	None:intergenic	25.0%
!	TATAAGATGAAAACAGTTGA+TGG	+	10710:3024-3043	MS.gene006126:intron	25.0%
!	TTTCCCATAAGCTAAAATAT+AGG	+	10710:2929-2948	MS.gene006126:intron	25.0%
!!	ATGTAGGAATATTTAAGTTC+AGG	+	10710:2585-2604	MS.gene006126:intron	25.0%
!!!	ACATTTTAACACTACTATGT+AGG	+	10710:2569-2588	MS.gene006126:intron	25.0%
!!!	ACTTGTATTTGTTTTTCTCT+TGG	+	10710:2986-3005	MS.gene006126:intron	25.0%
!!!	GGTTACTAAATTTTTTGTTG+CGG	+	10710:3212-3231	MS.gene006126:intron	25.0%
	AAAATATAGGCAGTGAAAAC+TGG	+	10710:2942-2961	MS.gene006126:intron	30.0%
	AAATATAGGCAGTGAAAACT+GGG	+	10710:2943-2962	MS.gene006126:intron	30.0%
	AGTGAAGAAAGAGATGAAAT+CGG	-	10710:1873-1892	None:intergenic	30.0%
	ATAGAATGAGGATTCACTAT+TGG	+	10710:2708-2727	MS.gene006126:intron	30.0%
	ATGATTACTGCATAACAGAA+AGG	-	10710:3258-3277	None:intergenic	30.0%
	CATAATATTATCCAACTCTG+CGG	-	10710:2277-2296	None:intergenic	30.0%
	GTGTTTGGAAATTGATTATC+AGG	+	10710:2874-2893	MS.gene006126:intron	30.0%
	GTTGGATAATATTATGACAG+TGG	+	10710:2281-2300	MS.gene006126:CDS	30.0%
	TAGCGCATTTCAATTAAAAC+TGG	-	10710:2785-2804	None:intergenic	30.0%
	TCAATTTCCAAACACTATTG+TGG	-	10710:2869-2888	None:intergenic	30.0%
	TTTCTGTTCAAAAACCAATC+TGG	-	10710:2333-2352	None:intergenic	30.0%
!	TTGCATAAGCAAACTGTTTT+GGG	-	10710:3078-3097	None:intergenic	30.0%
!	TTTGCATAAGCAAACTGTTT+TGG	-	10710:3079-3098	None:intergenic	30.0%
!!	AGTAATATAATGGATGTGTG+TGG	+	10710:3171-3190	MS.gene006126:intron	30.0%
!!	TTGGTTTTTGAACAGAAAGA+AGG	+	10710:2335-2354	MS.gene006126:CDS	30.0%
!!	TTGTTTTTCTCTTGGCTATA+TGG	+	10710:2994-3013	MS.gene006126:intron	30.0%
!!!	AAATGGGTTGTTTTTGTTGT+TGG	+	10710:2224-2243	MS.gene006126:intron	30.0%
!!!	ACTGCCTATATTTTAGCTTA+TGG	-	10710:2936-2955	None:intergenic	30.0%
!!!	CTGCCTATATTTTAGCTTAT+GGG	-	10710:2935-2954	None:intergenic	30.0%
	ACGAAAAGTAACAGAATCAG+TGG	-	10710:1910-1929	None:intergenic	35.0%
	AGAAAGAAGGATTACAAGGA+TGG	+	10710:2348-2367	MS.gene006126:CDS	35.0%
	AGGGATAATACTAATGTCCA+TGG	+	10710:2816-2835	MS.gene006126:intron	35.0%
	CATTAGTATTATCCCTCTTC+TGG	-	10710:2812-2831	None:intergenic	35.0%
	GAACAGAAAGAAGGATTACA+AGG	+	10710:2344-2363	MS.gene006126:CDS	35.0%
	GTGAAGAAAGAGATGAAATC+GGG	-	10710:1872-1891	None:intergenic	35.0%
	TCGTGATGTATTACAGTCTT+TGG	+	10710:1926-1945	MS.gene006126:intron	35.0%
	TTAGCTTCCACAATAGTGTT+TGG	+	10710:2859-2878	MS.gene006126:intron	35.0%
!	TGCATAAGCAAACTGTTTTG+GGG	-	10710:3077-3096	None:intergenic	35.0%
!!!	TTGTTGGATTTTTTTAGGGC+TGG	+	10710:2240-2259	MS.gene006126:intron	35.0%
	AAAGTGGTGAATCATGACAG+CGG	-	10710:2757-2776	None:intergenic	40.0%
	ACAATGAAGTAGCAACTGAC+CGG	-	10710:2446-2465	None:intergenic	40.0%
	ATCAACTTGACATGAAGCTG+AGG	+	10710:2394-2413	MS.gene006126:CDS	40.0%
	ATCGAGTTCATACACTGTCA+AGG	-	10710:2676-2695	None:intergenic	40.0%
	ATGGATGTGTGTGGAGAAAT+TGG	+	10710:3180-3199	MS.gene006126:intron	40.0%
	CCTCTTGTTCATGTCAACAT+CGG	-	10710:2084-2103	None:intergenic	40.0%
	CTGTTATGCAGTAATCATCG+TGG	+	10710:3260-3279	MS.gene006126:intron	40.0%
	GAAAGAGATGAAATCGGGAT+CGG	-	10710:1867-1886	None:intergenic	40.0%
	GTCAATTCAAGGTTCCAGAT+TGG	+	10710:2316-2335	MS.gene006126:CDS	40.0%
	GTGTTGAACACAAATGTCGA+TGG	+	10710:1981-2000	MS.gene006126:CDS	40.0%
	TCAACTTGACATGAAGCTGA+GGG	+	10710:2395-2414	MS.gene006126:CDS	40.0%
	TGGATGTGTGTGGAGAAATT+GGG	+	10710:3181-3200	MS.gene006126:intron	40.0%
	TTCGCAATGACCTCAATCAA+GGG	+	10710:2020-2039	MS.gene006126:CDS	40.0%
	TTCTCTTGGCTATATGGTAG+TGG	+	10710:3000-3019	MS.gene006126:intron	40.0%
!	ATGACCTCAATCAAGGGTAT+TGG	+	10710:2026-2045	MS.gene006126:CDS	40.0%
!!	CAGCTTCATGTCAAGTTGAT+TGG	-	10710:2394-2413	None:intergenic	40.0%
	ACTGGGCTGAAGTTATTTGC+TGG	+	10710:2960-2979	MS.gene006126:intron	45.0%
	CATGAAGCTGAGGGATGATT+TGG	+	10710:2404-2423	MS.gene006126:CDS	45.0%
	CCGATGTTGACATGAACAAG+AGG	+	10710:2081-2100	MS.gene006126:CDS	45.0%
	CCTACCAATACCCTTGATTG+AGG	-	10710:2033-2052	None:intergenic	45.0%
	CGCTAACATCTGCTGTAAGA+AGG	+	10710:2058-2077	MS.gene006126:CDS	45.0%
	GTTCGCAATGACCTCAATCA+AGG	+	10710:2019-2038	MS.gene006126:CDS	45.0%
	TGATTGAGGTCATTGCGAAC+TGG	-	10710:2019-2038	None:intergenic	45.0%
	TGCGAATCCTCGTCAATTCA+AGG	+	10710:2305-2324	MS.gene006126:CDS	45.0%
	TGGAGAGACTCAAGAAGATC+CGG	+	10710:2424-2443	MS.gene006126:CDS	45.0%
	TGTGTGGAGAAATTGGGCAT+TGG	+	10710:3187-3206	MS.gene006126:intron	45.0%
!	GCAGTAATCATCGTGGATTG+AGG	+	10710:3267-3286	MS.gene006126:intron	45.0%
!	TCTGGAACCTTGAATTGACG+AGG	-	10710:2315-2334	None:intergenic	45.0%
!!	CCTCAATCAAGGGTATTGGT+AGG	+	10710:2030-2049	MS.gene006126:CDS	45.0%
	AATGCGCTAGACACCAGAAG+AGG	+	10710:2796-2815	MS.gene006126:intron	50.0%
	ATGCGCTAGACACCAGAAGA+GGG	+	10710:2797-2816	MS.gene006126:intron	50.0%
	CACCAACTGTCTTTCCTCTG+CGG	-	10710:3340-3359	None:intergenic	50.0%
	GGTCAGCATACCAAGACTAC+TGG	+	10710:3314-3333	MS.gene006126:CDS	50.0%
	TATGCTGACCACGAACACGA+AGG	-	10710:3304-3323	None:intergenic	50.0%
	TCCACGCACAATCAAAGCCA+TGG	-	10710:2836-2855	None:intergenic	50.0%
!	ATCGTGGATTGAGGCACTAC+TGG	+	10710:3276-3295	MS.gene006126:CDS	50.0%
!	TCGTGGATTGAGGCACTACT+GGG	+	10710:3277-3296	MS.gene006126:CDS	50.0%
!	TGAATTGAGTGCCGCAGAGT+TGG	+	10710:2263-2282	MS.gene006126:CDS	50.0%
!!	TCCATGGCTTTGATTGTGCG+TGG	+	10710:2832-2851	MS.gene006126:intron	50.0%
!!	TGGAGAAATTGGGCATTGGC+TGG	+	10710:3191-3210	MS.gene006126:intron	50.0%
	GTGGTGAATCATGACAGCGG+AGG	-	10710:2754-2773	None:intergenic	55.0%
!	ATCATGACAGCGGAGGTGCA+TGG	-	10710:2747-2766	None:intergenic	55.0%
!	CGTGGATTGAGGCACTACTG+GGG	+	10710:3278-3297	MS.gene006126:CDS	55.0%
	ACCAAGACTACTGGCCGCAG+AGG	+	10710:3323-3342	MS.gene006126:CDS	60.0%
	GGCCGCAGAGGAAAGACAGT+TGG	+	10710:3335-3354	MS.gene006126:CDS	60.0%
	TACTGGGGCCTTCGTGTTCG+TGG	+	10710:3293-3312	MS.gene006126:CDS	60.0%
	TCCTCTGCGGCCAGTAGTCT+TGG	-	10710:3327-3346	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
10710	gene	1853	3376	1853	ID=MS.gene006126
10710	mRNA	1853	3376	1853	ID=MS.gene006126.t1;Parent=MS.gene006126
10710	exon	1853	1855	1853	ID=MS.gene006126.t1.exon1;Parent=MS.gene006126.t1
10710	CDS	1853	1855	1853	ID=cds.MS.gene006126.t1;Parent=MS.gene006126.t1
10710	exon	1942	2102	1942	ID=MS.gene006126.t1.exon2;Parent=MS.gene006126.t1
10710	CDS	1942	2102	1942	ID=cds.MS.gene006126.t1;Parent=MS.gene006126.t1
10710	exon	2257	2445	2257	ID=MS.gene006126.t1.exon3;Parent=MS.gene006126.t1
10710	CDS	2257	2445	2257	ID=cds.MS.gene006126.t1;Parent=MS.gene006126.t1
10710	exon	3271	3376	3271	ID=MS.gene006126.t1.exon4;Parent=MS.gene006126.t1
10710	CDS	3271	3376	3271	ID=cds.MS.gene006126.t1;Parent=MS.gene006126.t1

Gene Sequence

>MS.gene006126

ATGGTACGTTTCCGATCCCGATTTCATCTCTTTCTTCACTGTGTAGATGTTTCACCACTGATTCTGTTACTTTTCGTGATGTATTACAGTCTTTGGTTGCGAACGAAGAATTTCAGCACATTTTGCGTGTGTTGAACACAAATGTCGATGGAAAGCAGAAGATCCAGTTCGCAATGACCTCAATCAAGGGTATTGGTAGGAGATTCGCTAACATCTGCTGTAAGAAGGCCGATGTTGACATGAACAAGAGGTTCGTTGTTCTGATTTTGCTCCCACTTTTATAAATCAGTCATTTTTGTTGTTAAAATTAATGGGTTTCTTGAGTTTAATTGATCTCACATTTAAAAATCAAATTTTTGATATTATTGTTGAAATGGGTTGTTTTTGTTGTTGGATTTTTTTAGGGCTGGTGAATTGAGTGCCGCAGAGTTGGATAATATTATGACAGTGGTTGCGAATCCTCGTCAATTCAAGGTTCCAGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATTCTCTCAAGTTGTATCCAATCAACTTGACATGAAGCTGAGGGATGATTTGGAGAGACTCAAGAAGATCCGGTCAGTTGCTACTTCATTGTTTATTTCATTATTTTTTGTGTTTGATGATGATGTGATTGTTTGTGTTAGCCAGAAAGATGATAGAATTAATAATTATTGTTTTGATAGTGTATGTTTAAATTAACATTTTAACACTACTATGTAGGAATATTTAAGTTCAGGTGTAGTAGTAAGATGATAGAATTAATAATTATTGCTTTGATAGTTGGTTCTTGATGTTTTAGCTTCCTTGACAGTGTATGAACTCGATAGTGTTTGAATAATAGAATGAGGATTCACTATTGGAAAATCTAAAGCACCATGCACCTCCGCTGTCATGATTCACCACTTTTCTAACCAGTTTTAATTGAAATGCGCTAGACACCAGAAGAGGGATAATACTAATGTCCATGGCTTTGATTGTGCGTGGAGCTTTAGCTTCCACAATAGTGTTTGGAAATTGATTATCAGGAAGTGTTATTAATTTACTTGAGTAATCAAATGTTTCCCATAAGCTAAAATATAGGCAGTGAAAACTGGGCTGAAGTTATTTGCTGGTTGACTTGTATTTGTTTTTCTCTTGGCTATATGGTAGTGGATATAAGATGAAAACAGTTGATGGGCATGTTATTAACTGATTCTATAAGTTCCCCAAAACAGTTTGCTTATGCAAATTGATTAGTTTAAATAAATATCAATCTAGGCAGGCCATTATAATTTTTTTTAACTTCTCAAATTCTGTTTTCAGTAATATAATGGATGTGTGTGGAGAAATTGGGCATTGGCTGGTTACTAAATTTTTTGTTGCGGTAACACTTGAAGACTAACATCCTTTCTGTTATGCAGTAATCATCGTGGATTGAGGCACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACTGGCCGCAGAGGAAAGACAGTTGGTGTGTCAAAGAAGCGTTAA

Protein sequence

>MS.gene006126.t1

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR