Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49651.t1 | RHN55221.1 | 51.8 | 137 | 18 | 1 | 1 | 89 | 1 | 137 | 1.30E-24 | 122.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49651.t1 | A0A396HRT1 | 51.8 | 137 | 18 | 1 | 1 | 89 | 1 | 137 | 9.5e-25 | 122.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051613 | MS.gene49651 | 0.814823 | 1.27E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene49651 | 0.834144 | 3.55E-56 | -1.69E-46 |
| MS.gene053082 | MS.gene49651 | 0.81521 | 1.04E-51 | -1.69E-46 |
| MS.gene053396 | MS.gene49651 | 0.809862 | 1.53E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene49651 | 0.802223 | 6.21E-49 | -1.69E-46 |
| MS.gene055952 | MS.gene49651 | 0.832528 | 8.98E-56 | -1.69E-46 |
| MS.gene056082 | MS.gene49651 | 0.811275 | 7.59E-51 | -1.69E-46 |
| MS.gene056272 | MS.gene49651 | 0.810572 | 1.08E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene49651 | 0.807545 | 4.80E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene49651 | -0.811926 | 5.48E-51 | -1.69E-46 |
| MS.gene060654 | MS.gene49651 | 0.833485 | 5.19E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49651.t1 | MTR_5g037340 | 73.267 | 101 | 27 | 0 | 1 | 101 | 102 | 202 | 7.14e-46 | 149 |
| MS.gene49651.t1 | MTR_5g037343 | 79.775 | 89 | 18 | 0 | 1 | 89 | 529 | 617 | 8.48e-43 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTCTAATATTCATTAT+TGG | 0.190832 | 5.1:+27975649 | None:intergenic |
| ATTAATTGAACTACGCAATT+TGG | 0.223275 | 5.1:+27976087 | None:intergenic |
| CTTACCCACCTTTGGCATAT+CGG | 0.321319 | 5.1:-27978078 | MS.gene49651:CDS |
| TGGGTTTCCTTACCCACCTT+TGG | 0.326370 | 5.1:-27978086 | MS.gene49651:CDS |
| TATGAAGTGCTTCCTGTGGC+TGG | 0.328123 | 5.1:-27978106 | MS.gene49651:CDS |
| GTGGTTGAAGATCTGGATTC+TGG | 0.328300 | 5.1:-27975725 | MS.gene49651:CDS |
| CGCAATTTGGCATTCAAAGA+TGG | 0.377089 | 5.1:+27976100 | None:intergenic |
| TCCCTATGCTGGTGGAAATC+AGG | 0.384167 | 5.1:-27976002 | MS.gene49651:intron |
| GCCAATTGTGGTTGAAGATC+TGG | 0.391352 | 5.1:-27975732 | MS.gene49651:CDS |
| CCCTCATATCCTCGGCTTGA+GGG | 0.402433 | 5.1:-27976128 | MS.gene49651:CDS |
| TCCCTCAAGCCGAGGATATG+AGG | 0.423860 | 5.1:+27976127 | None:intergenic |
| TCCAGATCTTCAACCACAAT+TGG | 0.447233 | 5.1:+27975731 | None:intergenic |
| GTGATTCCACCTCCCTATGC+TGG | 0.466593 | 5.1:-27976013 | MS.gene49651:CDS |
| GGAGGTGGAATCACAACAAC+TGG | 0.470233 | 5.1:+27976022 | None:intergenic |
| ATGAAGTGCTTCCTGTGGCT+GGG | 0.480434 | 5.1:-27978105 | MS.gene49651:CDS |
| GCATATCGGCGCCGAAAACA+TGG | 0.482274 | 5.1:-27978064 | MS.gene49651:CDS |
| CGATATGCCAAAGGTGGGTA+AGG | 0.496175 | 5.1:+27978079 | None:intergenic |
| ACCTGATTTCCACCAGCATA+GGG | 0.521793 | 5.1:+27976001 | None:intergenic |
| TCACAACAACTGGCGGGACA+AGG | 0.532243 | 5.1:+27976032 | None:intergenic |
| TTGTGGAGCTCAATAGTTGT+GGG | 0.542599 | 5.1:-27975673 | MS.gene49651:CDS |
| TACCTGATTTCCACCAGCAT+AGG | 0.542727 | 5.1:+27976000 | None:intergenic |
| CCCTCAAGCCGAGGATATGA+GGG | 0.545606 | 5.1:+27976128 | None:intergenic |
| AATGAATATGAATATTATTG+TGG | 0.548506 | 5.1:-27975690 | MS.gene49651:CDS |
| CGGCGCCGATATGCCAAAGG+TGG | 0.556790 | 5.1:+27978073 | None:intergenic |
| ACTTCATACAGTTCAACGAC+AGG | 0.558306 | 5.1:+27978121 | None:intergenic |
| CTCGAACATTACCGTTCCGA+TGG | 0.560247 | 5.1:+27976176 | None:intergenic |
| GTACATATCTCGAAGAGTCT+CGG | 0.564352 | 5.1:+27976150 | None:intergenic |
| GGGTAAGGAAACCCAGCCAC+AGG | 0.566397 | 5.1:+27978094 | None:intergenic |
| CTTTATTTACTGCATTCCAT+CGG | 0.567753 | 5.1:-27976192 | MS.gene49651:CDS |
| ATTGTGGAGCTCAATAGTTG+TGG | 0.581159 | 5.1:-27975674 | MS.gene49651:CDS |
| ATTCCACCTCCCTATGCTGG+TGG | 0.582814 | 5.1:-27976010 | MS.gene49651:CDS |
| CACAACAACTGGCGGGACAA+GGG | 0.584662 | 5.1:+27976033 | None:intergenic |
| ACCCTCATATCCTCGGCTTG+AGG | 0.590014 | 5.1:-27976129 | MS.gene49651:CDS |
| TTTCCACCAGCATAGGGAGG+TGG | 0.591423 | 5.1:+27976007 | None:intergenic |
| AGTCGTTGTGGAGCCAATTG+TGG | 0.591579 | 5.1:-27975744 | MS.gene49651:CDS |
| GATATGTACCCTCATATCCT+CGG | 0.598019 | 5.1:-27976136 | MS.gene49651:CDS |
| TTTACTGCATTCCATCGGAA+CGG | 0.598977 | 5.1:-27976187 | MS.gene49651:CDS |
| GTGGAATCACAACAACTGGC+GGG | 0.613434 | 5.1:+27976026 | None:intergenic |
| GGTGGAATCACAACAACTGG+CGG | 0.626056 | 5.1:+27976025 | None:intergenic |
| CATATCGGCGCCGAAAACAT+GGG | 0.628337 | 5.1:-27978063 | MS.gene49651:intron |
| TTTCGGCGCCGATATGCCAA+AGG | 0.640609 | 5.1:+27978070 | None:intergenic |
| GGCGCCGATATGCCAAAGGT+GGG | 0.645162 | 5.1:+27978074 | None:intergenic |
| ACAGTTCAACGACAGGATTG+AGG | 0.645379 | 5.1:+27978128 | None:intergenic |
| ATGGTTCATCCCTCAAGCCG+AGG | 0.651856 | 5.1:+27976119 | None:intergenic |
| TGTGGAGCTCAATAGTTGTG+GGG | 0.659747 | 5.1:-27975672 | MS.gene49651:CDS |
| ACTGTATGAAGTGCTTCCTG+TGG | 0.670228 | 5.1:-27978110 | MS.gene49651:CDS |
| TGATTTCCACCAGCATAGGG+AGG | 0.692781 | 5.1:+27976004 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATATTAAAACATAAAA+AGG | + | chr5.1:27977950-27977969 | None:intergenic | 10.0% |
| !!! | ATAAATTTTGTTATATGATA+TGG | - | chr5.1:27975996-27976015 | MS.gene49651:intron | 10.0% |
| !!! | TAATTTTCAAAACTAAATTA+TGG | - | chr5.1:27977077-27977096 | MS.gene49651:intron | 10.0% |
| !!! | TTTTATTAGAAATTTAAAAC+TGG | - | chr5.1:27976492-27976511 | MS.gene49651:intron | 10.0% |
| !! | AAAAAATAAAAGGTGAAATT+AGG | + | chr5.1:27975780-27975799 | None:intergenic | 15.0% |
| !! | AAAACAGAATATGTAAAAAA+AGG | + | chr5.1:27977867-27977886 | None:intergenic | 15.0% |
| !! | AATGAATATGAATATTATTG+TGG | - | chr5.1:27978113-27978132 | MS.gene49651:CDS | 15.0% |
| !! | ATCATAGATGAAAAAATAAA+AGG | + | chr5.1:27975790-27975809 | None:intergenic | 15.0% |
| !! | CTTATAAATGTTCATTAAAA+GGG | + | chr5.1:27976897-27976916 | None:intergenic | 15.0% |
| !! | TCTTATAAATGTTCATTAAA+AGG | + | chr5.1:27976898-27976917 | None:intergenic | 15.0% |
| !!! | AAACTTTAAAAAAATTTAGC+TGG | - | chr5.1:27977007-27977026 | MS.gene49651:intron | 15.0% |
| !! | AAAACTAAATTATGGAAACT+GGG | - | chr5.1:27977085-27977104 | MS.gene49651:intron | 20.0% |
| !! | ACATAAAAAACAATTAGAGT+GGG | + | chr5.1:27976795-27976814 | None:intergenic | 20.0% |
| !!! | CATATTCTGTTTTTGAATAT+AGG | - | chr5.1:27977874-27977893 | MS.gene49651:intron | 20.0% |
| !!! | TTCTGATTTTATATATTCCT+AGG | + | chr5.1:27976184-27976203 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGCTTTTATGTTA+GGG | - | chr5.1:27977564-27977583 | MS.gene49651:intron | 20.0% |
| !!! | TTTAGCTTTGAATTTTCATA+TGG | - | chr5.1:27975823-27975842 | MS.gene49651:intron | 20.0% |
| ! | AATTGCTGGATATTTATTTG+TGG | - | chr5.1:27977997-27978016 | MS.gene49651:intron | 25.0% |
| ! | ATAACTACCATGAAAGATAA+AGG | + | chr5.1:27975868-27975887 | None:intergenic | 25.0% |
| ! | ATTAATTGAACTACGCAATT+TGG | + | chr5.1:27977719-27977738 | None:intergenic | 25.0% |
| ! | CAAAACTAAATTATGGAAAC+TGG | - | chr5.1:27977084-27977103 | MS.gene49651:intron | 25.0% |
| ! | CATAAAAGCAAAAACAACTT+AGG | + | chr5.1:27977561-27977580 | None:intergenic | 25.0% |
| ! | CATTATGCTATAAATCAACT+TGG | - | chr5.1:27976399-27976418 | MS.gene49651:intron | 25.0% |
| ! | GACATAAAAAACAATTAGAG+TGG | + | chr5.1:27976796-27976815 | None:intergenic | 25.0% |
| ! | TAACTACCATGAAAGATAAA+GGG | + | chr5.1:27975867-27975886 | None:intergenic | 25.0% |
| ! | TTCACACTAATATTCATTCT+TGG | + | chr5.1:27978025-27978044 | None:intergenic | 25.0% |
| ! | TTCATAAACATTTGAATTGC+TGG | - | chr5.1:27977983-27978002 | MS.gene49651:intron | 25.0% |
| !! | ACCTAAAAAGCACAAAAATT+GGG | + | chr5.1:27977197-27977216 | None:intergenic | 25.0% |
| !! | AGAGTATGTTGATTATCTTT+GGG | - | chr5.1:27977440-27977459 | MS.gene49651:intron | 25.0% |
| !! | ATAATGTATACCCATGTTTT+CGG | + | chr5.1:27975753-27975772 | None:intergenic | 25.0% |
| !! | GTTGATTTATAGCATAATGT+TGG | + | chr5.1:27976398-27976417 | None:intergenic | 25.0% |
| !! | TAGAGTATGTTGATTATCTT+TGG | - | chr5.1:27977439-27977458 | MS.gene49651:intron | 25.0% |
| !! | TTAGTGTGAATTTCTTTTTC+AGG | - | chr5.1:27978035-27978054 | MS.gene49651:intron | 25.0% |
| !!! | CTAATTGTTTTTTATGTCGA+AGG | - | chr5.1:27976798-27976817 | MS.gene49651:intron | 25.0% |
| !!! | GCGGATATAGTATATTTTTA+AGG | - | chr5.1:27975971-27975990 | MS.gene49651:intron | 25.0% |
| !!! | GTTGTTTTTGCTTTTATGTT+AGG | - | chr5.1:27977563-27977582 | MS.gene49651:intron | 25.0% |
| !!! | GTTTTTGATAAGTTTTGTCA+TGG | - | chr5.1:27977839-27977858 | MS.gene49651:intron | 25.0% |
| AACTACCATGAAAGATAAAG+GGG | + | chr5.1:27975866-27975885 | None:intergenic | 30.0% | |
| ATGTATTTACTTCCTAGTCT+AGG | + | chr5.1:27976129-27976148 | None:intergenic | 30.0% | |
| GAAAATTAAAGCAGTCACAT+AGG | + | chr5.1:27977065-27977084 | None:intergenic | 30.0% | |
| GCTAATAAATGAAAAAGCTG+AGG | + | chr5.1:27976726-27976745 | None:intergenic | 30.0% | |
| GTTTATTAGCTATAGTGACA+AGG | - | chr5.1:27976830-27976849 | MS.gene49651:intron | 30.0% | |
| TAAAAGGGTAAAATAAGCAC+AGG | + | chr5.1:27976882-27976901 | None:intergenic | 30.0% | |
| TGTATTTACTTCCTAGTCTA+GGG | + | chr5.1:27976128-27976147 | None:intergenic | 30.0% | |
| TTCAAGACTAAGATAATGTG+TGG | + | chr5.1:27976748-27976767 | None:intergenic | 30.0% | |
| TTGATTACCTTGTGAGAATT+TGG | - | chr5.1:27975949-27975968 | MS.gene49651:intron | 30.0% | |
| ! | CAGAAAAACTCGAACATTTT+AGG | - | chr5.1:27976333-27976352 | MS.gene49651:intron | 30.0% |
| ! | CCTAAAAAGCACAAAAATTG+GGG | + | chr5.1:27977196-27977215 | None:intergenic | 30.0% |
| ! | CTTTATTTACTGCATTCCAT+CGG | - | chr5.1:27977611-27977630 | MS.gene49651:intron | 30.0% |
| ! | GACCTAAAAAGCACAAAAAT+TGG | + | chr5.1:27977198-27977217 | None:intergenic | 30.0% |
| ! | GTTTCGAAATTTGGTTCATT+GGG | + | chr5.1:27976562-27976581 | None:intergenic | 30.0% |
| ! | TATGTATGCTATTGATTGTC+TGG | - | chr5.1:27975892-27975911 | MS.gene49651:intron | 30.0% |
| ! | TCGAGTTTTTCTGTAAATGA+TGG | + | chr5.1:27976326-27976345 | None:intergenic | 30.0% |
| ! | TGTTTCGAAATTTGGTTCAT+TGG | + | chr5.1:27976563-27976582 | None:intergenic | 30.0% |
| ! | TTACTAGCGTTGAAGTTATA+GGG | + | chr5.1:27977491-27977510 | None:intergenic | 30.0% |
| ! | TTGGTGTCTTAGATGTAATT+CGG | - | chr5.1:27977255-27977274 | MS.gene49651:intron | 30.0% |
| !! | CATTATCTTAGTCTTGAATC+TGG | - | chr5.1:27976750-27976769 | MS.gene49651:intron | 30.0% |
| !!! | TTAGTCTTGAATCTGGTTTT+TGG | - | chr5.1:27976757-27976776 | MS.gene49651:intron | 30.0% |
| !!! | TTCTGTTTTTGAATATAGGC+TGG | - | chr5.1:27977878-27977897 | MS.gene49651:intron | 30.0% |
| ATTACCTTGTGAGAATTTGG+CGG | - | chr5.1:27975952-27975971 | MS.gene49651:intron | 35.0% | |
| CACATGTGAAACAAATATCG+AGG | + | chr5.1:27977281-27977300 | None:intergenic | 35.0% | |
| CATTGAATAACCACTAGACT+AGG | - | chr5.1:27976146-27976165 | MS.gene49651:CDS | 35.0% | |
| GAATGTGTTATGTTGTGTTG+AGG | - | chr5.1:27976622-27976641 | MS.gene49651:intron | 35.0% | |
| GCAAGGAAGGATAATACAAA+AGG | + | chr5.1:27976680-27976699 | None:intergenic | 35.0% | |
| GCTTAAAGCTTAGTAAGCTT+TGG | - | chr5.1:27977370-27977389 | MS.gene49651:intron | 35.0% | |
| GTATTTACTTCCTAGTCTAG+GGG | + | chr5.1:27976127-27976146 | None:intergenic | 35.0% | |
| TAACATAGAGAAAACCAGCA+AGG | + | chr5.1:27977309-27977328 | None:intergenic | 35.0% | |
| TAGCTTCGTGTTTCGAAATT+TGG | + | chr5.1:27976571-27976590 | None:intergenic | 35.0% | |
| ! | GTTACTAGCGTTGAAGTTAT+AGG | + | chr5.1:27977492-27977511 | None:intergenic | 35.0% |
| !! | CCCCAATTTTTGTGCTTTTT+AGG | - | chr5.1:27977193-27977212 | MS.gene49651:intron | 35.0% |
| !! | GCATAATGTTGGCTCTATAA+TGG | + | chr5.1:27976387-27976406 | None:intergenic | 35.0% |
| !!! | TGCTTCTCTATTTTTGTTGC+AGG | + | chr5.1:27976464-27976483 | None:intergenic | 35.0% |
| AAACACCAAGACTGCATGTT+TGG | + | chr5.1:27977237-27977256 | None:intergenic | 40.0% | |
| ACTTCATACAGTTCAACGAC+AGG | + | chr5.1:27975685-27975704 | None:intergenic | 40.0% | |
| AGTGACAAGGTTTCGAATCA+TGG | - | chr5.1:27976843-27976862 | MS.gene49651:intron | 40.0% | |
| ATATCCGCCAAATTCTCACA+AGG | + | chr5.1:27975959-27975978 | None:intergenic | 40.0% | |
| ATCCACCCCTTTATCTTTCA+TGG | - | chr5.1:27975858-27975877 | MS.gene49651:intron | 40.0% | |
| ATTGTGGAGCTCAATAGTTG+TGG | - | chr5.1:27978129-27978148 | MS.gene49651:CDS | 40.0% | |
| CAGAAGCTGTTACACTTAGA+GGG | - | chr5.1:27976199-27976218 | MS.gene49651:CDS | 40.0% | |
| CATTGAATAACCCCTAGACT+AGG | - | chr5.1:27976114-27976133 | MS.gene49651:CDS | 40.0% | |
| CGCAATTTGGCATTCAAAGA+TGG | + | chr5.1:27977706-27977725 | None:intergenic | 40.0% | |
| CTAGGAAGTTCTGTAATCCT+AGG | - | chr5.1:27976164-27976183 | MS.gene49651:CDS | 40.0% | |
| CTGCACTTAGGATAAAGTTG+AGG | + | chr5.1:27977166-27977185 | None:intergenic | 40.0% | |
| CTGCATGTTTGGCAAAAAAC+TGG | + | chr5.1:27977226-27977245 | None:intergenic | 40.0% | |
| GATATGTACCCTCATATCCT+CGG | - | chr5.1:27977667-27977686 | MS.gene49651:intron | 40.0% | |
| GGAGTTTGGAAACTGATGTA+AGG | - | chr5.1:27977132-27977151 | MS.gene49651:intron | 40.0% | |
| GTACATATCTCGAAGAGTCT+CGG | + | chr5.1:27977656-27977675 | None:intergenic | 40.0% | |
| TACAGAACTTCCTAGTCTAG+TGG | + | chr5.1:27976159-27976178 | None:intergenic | 40.0% | |
| TACCATGAAAGATAAAGGGG+TGG | + | chr5.1:27975863-27975882 | None:intergenic | 40.0% | |
| TCAGAAGCTGTTACACTTAG+AGG | - | chr5.1:27976198-27976217 | MS.gene49651:CDS | 40.0% | |
| TCCAGATCTTCAACCACAAT+TGG | + | chr5.1:27978075-27978094 | None:intergenic | 40.0% | |
| TGGACATTGATGTGAATGCT+GGG | - | chr5.1:27977898-27977917 | MS.gene49651:intron | 40.0% | |
| TTGTGGAGCTCAATAGTTGT+GGG | - | chr5.1:27978130-27978149 | MS.gene49651:CDS | 40.0% | |
| TTTACTGCATTCCATCGGAA+CGG | - | chr5.1:27977616-27977635 | MS.gene49651:intron | 40.0% | |
| ! | TAAATGATGGTGCCAACGAA+GGG | + | chr5.1:27976313-27976332 | None:intergenic | 40.0% |
| ! | TCTGGAATGTCATTTGTGAC+TGG | - | chr5.1:27975910-27975929 | MS.gene49651:intron | 40.0% |
| ! | TTTTGCCAAACATGCAGTCT+TGG | - | chr5.1:27977229-27977248 | MS.gene49651:intron | 40.0% |
| ! | TTTTGCTGATGTTGAGTCTC+TGG | - | chr5.1:27977588-27977607 | MS.gene49651:intron | 40.0% |
| !! | AAACATGCAGTCTTGGTGTT+TGG | - | chr5.1:27977236-27977255 | MS.gene49651:intron | 40.0% |
| AAACTCCACCTCACTAAGGA+TGG | + | chr5.1:27977119-27977138 | None:intergenic | 45.0% | |
| ACAGTTCAACGACAGGATTG+AGG | + | chr5.1:27975678-27975697 | None:intergenic | 45.0% | |
| ACCTGATTTCCACCAGCATA+GGG | + | chr5.1:27977805-27977824 | None:intergenic | 45.0% | |
| AGTCACATAGGTGCAGAATG+AGG | + | chr5.1:27977053-27977072 | None:intergenic | 45.0% | |
| ATCCTTAGTGAGGTGGAGTT+TGG | - | chr5.1:27977118-27977137 | MS.gene49651:intron | 45.0% | |
| ATGCTGGTGGAAATCAGGTA+AGG | - | chr5.1:27977806-27977825 | MS.gene49651:intron | 45.0% | |
| CTGGACATTGATGTGAATGC+TGG | - | chr5.1:27977897-27977916 | MS.gene49651:intron | 45.0% | |
| CTTACCCACCTTTGGCATAT+CGG | - | chr5.1:27975725-27975744 | MS.gene49651:CDS | 45.0% | |
| CTTAGGATAAAGTTGAGGCC+AGG | + | chr5.1:27977161-27977180 | None:intergenic | 45.0% | |
| GCCAATTGTGGTTGAAGATC+TGG | - | chr5.1:27978071-27978090 | MS.gene49651:CDS | 45.0% | |
| GGACATTGATGTGAATGCTG+GGG | - | chr5.1:27977899-27977918 | MS.gene49651:intron | 45.0% | |
| GTGGTTGAAGATCTGGATTC+TGG | - | chr5.1:27978078-27978097 | MS.gene49651:CDS | 45.0% | |
| TACCTGATTTCCACCAGCAT+AGG | + | chr5.1:27977806-27977825 | None:intergenic | 45.0% | |
| TGTGGAGCTCAATAGTTGTG+GGG | - | chr5.1:27978131-27978150 | MS.gene49651:CDS | 45.0% | |
| TTCCAAACTCCACCTCACTA+AGG | + | chr5.1:27977123-27977142 | None:intergenic | 45.0% | |
| ! | AAATGATGGTGCCAACGAAG+GGG | + | chr5.1:27976312-27976331 | None:intergenic | 45.0% |
| ! | ACTGTATGAAGTGCTTCCTG+TGG | - | chr5.1:27975693-27975712 | MS.gene49651:CDS | 45.0% |
| ! | ATGCTGGGGCATCATTCATT+AGG | - | chr5.1:27977913-27977932 | MS.gene49651:intron | 45.0% |
| ! | GTAAATGATGGTGCCAACGA+AGG | + | chr5.1:27976314-27976333 | None:intergenic | 45.0% |
| !! | AGTAAGCTTTGGCTTGAGGT+GGG | - | chr5.1:27977381-27977400 | MS.gene49651:intron | 45.0% |
| !! | GCTTAGTAAGCTTTGGCTTG+AGG | - | chr5.1:27977377-27977396 | MS.gene49651:intron | 45.0% |
| !! | TAGTAAGCTTTGGCTTGAGG+TGG | - | chr5.1:27977380-27977399 | MS.gene49651:intron | 45.0% |
| !!! | TCTTTTTCAGGCAGTCGTTG+TGG | - | chr5.1:27978047-27978066 | MS.gene49651:intron | 45.0% |
| AGTCGTTGTGGAGCCAATTG+TGG | - | chr5.1:27978059-27978078 | MS.gene49651:intron | 50.0% | |
| CACTGTTGCCATCCTTAGTG+AGG | - | chr5.1:27977108-27977127 | MS.gene49651:intron | 50.0% | |
| CGATATGCCAAAGGTGGGTA+AGG | + | chr5.1:27975727-27975746 | None:intergenic | 50.0% | |
| CTCGAACATTACCGTTCCGA+TGG | + | chr5.1:27977630-27977649 | None:intergenic | 50.0% | |
| GAAACTGATGTAAGGCAGCC+TGG | - | chr5.1:27977140-27977159 | MS.gene49651:intron | 50.0% | |
| GCAGAGAAAGCAAGCAAGGA+AGG | + | chr5.1:27976693-27976712 | None:intergenic | 50.0% | |
| GCATGCAGAGAAAGCAAGCA+AGG | + | chr5.1:27976697-27976716 | None:intergenic | 50.0% | |
| GGAGGTGGAATCACAACAAC+TGG | + | chr5.1:27977784-27977803 | None:intergenic | 50.0% | |
| GGTGGAATCACAACAACTGG+CGG | + | chr5.1:27977781-27977800 | None:intergenic | 50.0% | |
| GTGGAATCACAACAACTGGC+GGG | + | chr5.1:27977780-27977799 | None:intergenic | 50.0% | |
| TCACATGTGACATGCCTTGC+TGG | - | chr5.1:27977292-27977311 | MS.gene49651:intron | 50.0% | |
| TCCCTATGCTGGTGGAAATC+AGG | - | chr5.1:27977801-27977820 | MS.gene49651:intron | 50.0% | |
| TGATTTCCACCAGCATAGGG+AGG | + | chr5.1:27977802-27977821 | None:intergenic | 50.0% | |
| TGGGTTTCCTTACCCACCTT+TGG | - | chr5.1:27975717-27975736 | MS.gene49651:CDS | 50.0% | |
| TGTTGCCATCCTTAGTGAGG+TGG | - | chr5.1:27977111-27977130 | MS.gene49651:intron | 50.0% | |
| ! | ATGAAGTGCTTCCTGTGGCT+GGG | - | chr5.1:27975698-27975717 | MS.gene49651:CDS | 50.0% |
| ! | CATATCGGCGCCGAAAACAT+GGG | - | chr5.1:27975740-27975759 | MS.gene49651:CDS | 50.0% |
| ! | TATGAAGTGCTTCCTGTGGC+TGG | - | chr5.1:27975697-27975716 | MS.gene49651:CDS | 50.0% |
| !! | GTAAGCTTTGGCTTGAGGTG+GGG | - | chr5.1:27977382-27977401 | MS.gene49651:intron | 50.0% |
| ATGGTTCATCCCTCAAGCCG+AGG | + | chr5.1:27977687-27977706 | None:intergenic | 55.0% | |
| ATTCCACCTCCCTATGCTGG+TGG | - | chr5.1:27977793-27977812 | MS.gene49651:intron | 55.0% | |
| CACAACAACTGGCGGGACAA+GGG | + | chr5.1:27977773-27977792 | None:intergenic | 55.0% | |
| CCCTCAAGCCGAGGATATGA+GGG | + | chr5.1:27977678-27977697 | None:intergenic | 55.0% | |
| CTCGAAACTCACCCCTTCGT+TGG | - | chr5.1:27976298-27976317 | MS.gene49651:intron | 55.0% | |
| GTGATTCCACCTCCCTATGC+TGG | - | chr5.1:27977790-27977809 | MS.gene49651:intron | 55.0% | |
| TCACAACAACTGGCGGGACA+AGG | + | chr5.1:27977774-27977793 | None:intergenic | 55.0% | |
| TCCCTCAAGCCGAGGATATG+AGG | + | chr5.1:27977679-27977698 | None:intergenic | 55.0% | |
| TTTCCACCAGCATAGGGAGG+TGG | + | chr5.1:27977799-27977818 | None:intergenic | 55.0% | |
| ! | ACCCTCATATCCTCGGCTTG+AGG | - | chr5.1:27977674-27977693 | MS.gene49651:intron | 55.0% |
| ! | CCCTCATATCCTCGGCTTGA+GGG | - | chr5.1:27977675-27977694 | MS.gene49651:intron | 55.0% |
| ! | GCATATCGGCGCCGAAAACA+TGG | - | chr5.1:27975739-27975758 | MS.gene49651:CDS | 55.0% |
| !! | TGGGGCTCTAGACTGCACTT+AGG | + | chr5.1:27977178-27977197 | None:intergenic | 55.0% |
| !! | TTTCGGCGCCGATATGCCAA+AGG | + | chr5.1:27975736-27975755 | None:intergenic | 55.0% |
| GGGTAAGGAAACCCAGCCAC+AGG | + | chr5.1:27975712-27975731 | None:intergenic | 60.0% | |
| !! | GGCGCCGATATGCCAAAGGT+GGG | + | chr5.1:27975732-27975751 | None:intergenic | 60.0% |
| !! | CGGCGCCGATATGCCAAAGG+TGG | + | chr5.1:27975733-27975752 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 27975655 | 27978170 | 27975655 | ID=MS.gene49651 |
| chr5.1 | mRNA | 27975655 | 27978170 | 27975655 | ID=MS.gene49651.t1;Parent=MS.gene49651 |
| chr5.1 | exon | 27978064 | 27978170 | 27978064 | ID=MS.gene49651.t1.exon1;Parent=MS.gene49651.t1 |
| chr5.1 | CDS | 27978064 | 27978170 | 27978064 | ID=cds.MS.gene49651.t1;Parent=MS.gene49651.t1 |
| chr5.1 | exon | 27976003 | 27976240 | 27976003 | ID=MS.gene49651.t1.exon2;Parent=MS.gene49651.t1 |
| chr5.1 | CDS | 27976003 | 27976240 | 27976003 | ID=cds.MS.gene49651.t1;Parent=MS.gene49651.t1 |
| chr5.1 | exon | 27975655 | 27975768 | 27975655 | ID=MS.gene49651.t1.exon3;Parent=MS.gene49651.t1 |
| chr5.1 | CDS | 27975655 | 27975768 | 27975655 | ID=cds.MS.gene49651.t1;Parent=MS.gene49651.t1 |
| Gene Sequence |
| Protein sequence |
