Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49962.t1 | XP_003592476.2 | 99.1 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 1.80E-169 | 605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49962.t1 | B6ZJZ9 | 70.4 | 318 | 92 | 2 | 1 | 318 | 1 | 316 | 4.3e-119 | 429.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49962.t1 | G7IE57 | 99.1 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 1.3e-169 | 605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene49962 | 0.812616 | 3.88E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene49962 | 0.818455 | 1.94E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene49962 | 0.813406 | 2.60E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene49962 | 0.83012 | 3.51E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene49962 | 0.816919 | 4.31E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene49962 | 0.812085 | 5.06E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene49962 | 0.828079 | 1.10E-54 | -1.69E-46 |
| MS.gene051694 | MS.gene49962 | 0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene052481 | MS.gene49962 | 0.800571 | 1.35E-48 | -1.69E-46 |
| MS.gene052501 | MS.gene49962 | 0.807394 | 5.16E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene49962 | 0.81391 | 2.01E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene49962 | 0.811267 | 7.63E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene49962 | 0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene49962 | 0.813661 | 2.29E-51 | -1.69E-46 |
| MS.gene057856 | MS.gene49962 | 0.818556 | 1.84E-52 | -1.69E-46 |
| MS.gene058007 | MS.gene49962 | 0.80044 | 1.44E-48 | -1.69E-46 |
| MS.gene058376 | MS.gene49962 | 0.820372 | 7.10E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene49962 | 0.801782 | 7.66E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene49962 | 0.817239 | 3.66E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene49962 | 0.812607 | 3.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49962.t1 | MTR_1g105410 | 99.065 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 0.0 | 645 |
| MS.gene49962.t1 | MTR_5g039730 | 69.032 | 310 | 94 | 2 | 1 | 310 | 1 | 308 | 1.52e-151 | 428 |
| MS.gene49962.t1 | MTR_7g039810 | 68.199 | 261 | 81 | 2 | 1 | 261 | 1 | 259 | 1.37e-122 | 352 |
| MS.gene49962.t1 | MTR_7g445250 | 67.816 | 261 | 82 | 2 | 1 | 261 | 1 | 259 | 6.06e-122 | 350 |
| MS.gene49962.t1 | MTR_5g081910 | 26.899 | 316 | 182 | 6 | 24 | 303 | 21 | 323 | 2.46e-27 | 109 |
| MS.gene49962.t1 | MTR_5g081910 | 28.326 | 233 | 126 | 4 | 99 | 303 | 30 | 249 | 9.52e-23 | 95.5 |
| MS.gene49962.t1 | MTR_7g445270 | 72.000 | 50 | 14 | 0 | 1 | 50 | 1 | 50 | 1.86e-19 | 80.9 |
| MS.gene49962.t1 | MTR_8g076760 | 23.860 | 285 | 196 | 7 | 25 | 297 | 28 | 303 | 4.54e-19 | 86.3 |
| MS.gene49962.t1 | MTR_8g096050 | 29.097 | 299 | 173 | 13 | 13 | 298 | 229 | 501 | 1.32e-18 | 86.7 |
| MS.gene49962.t1 | MTR_1g036280 | 24.198 | 343 | 185 | 10 | 26 | 302 | 25 | 358 | 2.15e-17 | 82.4 |
| MS.gene49962.t1 | MTR_7g109135 | 25.000 | 304 | 196 | 8 | 8 | 297 | 19 | 304 | 8.55e-14 | 71.2 |
| MS.gene49962.t1 | MTR_7g109135 | 24.232 | 293 | 205 | 6 | 8 | 297 | 19 | 297 | 2.66e-13 | 69.7 |
| MS.gene49962.t1 | MTR_3g104500 | 21.895 | 306 | 189 | 12 | 13 | 293 | 36 | 316 | 1.23e-12 | 67.8 |
| MS.gene49962.t1 | MTR_7g084400 | 27.181 | 298 | 177 | 14 | 13 | 298 | 215 | 484 | 2.04e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49962.t1 | AT3G05290 | 69.903 | 309 | 91 | 2 | 1 | 308 | 1 | 308 | 8.71e-159 | 446 |
| MS.gene49962.t1 | AT5G27520 | 69.551 | 312 | 91 | 3 | 1 | 310 | 3 | 312 | 1.41e-156 | 441 |
| MS.gene49962.t1 | AT2G39970 | 24.522 | 314 | 190 | 6 | 26 | 303 | 23 | 325 | 4.81e-26 | 105 |
| MS.gene49962.t1 | AT5G66380 | 23.411 | 299 | 209 | 6 | 10 | 297 | 9 | 298 | 1.61e-19 | 87.8 |
| MS.gene49962.t1 | AT5G07320 | 27.178 | 287 | 172 | 13 | 20 | 298 | 218 | 475 | 1.94e-12 | 68.2 |
| MS.gene49962.t1 | AT4G32400 | 22.667 | 300 | 197 | 8 | 7 | 297 | 110 | 383 | 2.19e-12 | 67.8 |
Find 70 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAAGATGCTTTCAATT+TGG | 0.135005 | 1.1:-75323876 | None:intergenic |
| CTACTTTAAGAGACTATATT+TGG | 0.166458 | 1.1:+75322406 | MS.gene49962:CDS |
| CTGGAGCACTCTATACTATT+TGG | 0.239300 | 1.1:+75323696 | MS.gene49962:CDS |
| ATTCAAGATGCTTTCAATTT+GGG | 0.243894 | 1.1:-75323875 | None:intergenic |
| TTGAACTTCAGCTTGATATT+TGG | 0.253052 | 1.1:-75321367 | None:intergenic |
| TCGTCGTTTATTTATTTCTA+TGG | 0.253599 | 1.1:+75322377 | MS.gene49962:CDS |
| AGGATGCAGACAAGTGAATT+TGG | 0.266292 | 1.1:+75322958 | MS.gene49962:CDS |
| AACAACAAACCCATCTATTC+AGG | 0.272652 | 1.1:+75323062 | MS.gene49962:CDS |
| CCTTGAGGATGCTGTATCTA+AGG | 0.273262 | 1.1:-75322938 | None:intergenic |
| TCATTGTCTGAAGCTACTTC+TGG | 0.274841 | 1.1:+75321288 | MS.gene49962:CDS |
| CTTTCATTGTACCAAGGCTT+GGG | 0.297703 | 1.1:+75322329 | MS.gene49962:CDS |
| GAGAAAGCAGAAAGTGATTC+CGG | 0.301391 | 1.1:-75323272 | None:intergenic |
| AAGAGTGATACCTGAATAGA+TGG | 0.321223 | 1.1:-75323072 | None:intergenic |
| TGTTGTTAAAAGAATAGATA+TGG | 0.354667 | 1.1:-75323046 | None:intergenic |
| GAAGCTACTTCTGGGGCTAT+TGG | 0.386853 | 1.1:+75321297 | MS.gene49962:CDS |
| GCTTGACATACCCAGCTATC+AGG | 0.393298 | 1.1:+75323336 | MS.gene49962:CDS |
| TAGGTGTAAAGTCACTATTC+AGG | 0.395494 | 1.1:+75323613 | MS.gene49962:intron |
| TTGATAATCCACCTGATAGC+TGG | 0.413991 | 1.1:-75323347 | None:intergenic |
| TGGAAAAGAGAAGGCCTCTT+GGG | 0.439214 | 1.1:+75323716 | MS.gene49962:CDS |
| GCTTTCATTGTACCAAGGCT+TGG | 0.441061 | 1.1:+75322328 | MS.gene49962:CDS |
| CATTGTCTGAAGCTACTTCT+GGG | 0.446171 | 1.1:+75321289 | MS.gene49962:CDS |
| TGGATTCTGATGCTCATCAT+TGG | 0.448309 | 1.1:+75323830 | MS.gene49962:CDS |
| TTGATTGCCGCTACTATGTC+CGG | 0.467353 | 1.1:+75322467 | MS.gene49962:CDS |
| AGAAAGCAGAAAGTGATTCC+GGG | 0.471336 | 1.1:-75323271 | None:intergenic |
| TTGGAAAAGAGAAGGCCTCT+TGG | 0.475034 | 1.1:+75323715 | MS.gene49962:CDS |
| AAGGCGCAGAGGACAATCTC+TGG | 0.476185 | 1.1:+75323677 | MS.gene49962:CDS |
| GCTGAAACACAGACTACTAA+AGG | 0.477004 | 1.1:+75323214 | MS.gene49962:CDS |
| ATAAATAAACGACGAAATGA+AGG | 0.484849 | 1.1:-75322369 | None:intergenic |
| ACCTGGAGTGATGCATTTGA+TGG | 0.490024 | 1.1:+75323018 | MS.gene49962:CDS |
| CAGCTCTGCATTACTTCTGA+TGG | 0.493278 | 1.1:+75323781 | MS.gene49962:CDS |
| AGACCTTATCAGAGGGTACC+TGG | 0.496284 | 1.1:+75323001 | MS.gene49962:CDS |
| ACTCCAGGTACCCTCTGATA+AGG | 0.497971 | 1.1:-75323004 | None:intergenic |
| TTGGAAAATCCAAGGGACTC+TGG | 0.499445 | 1.1:+75322977 | MS.gene49962:CDS |
| CTGAAACACAGACTACTAAA+GGG | 0.499748 | 1.1:+75323215 | MS.gene49962:CDS |
| GGAAGCAATTTCTAAACGTC+AGG | 0.508035 | 1.1:+75322304 | MS.gene49962:CDS |
| TAAGGTCTGCCAGAGTCCCT+TGG | 0.511250 | 1.1:-75322986 | None:intergenic |
| GAGTACAGAAGCTGAAAAGA+AGG | 0.511723 | 1.1:+75323658 | MS.gene49962:CDS |
| CCAGCCATCAAAGAAAATAC+AGG | 0.513015 | 1.1:+75321391 | MS.gene49962:CDS |
| ACAAGACGGTGGTGCTAACA+AGG | 0.523486 | 1.1:-75321323 | None:intergenic |
| TTCCGGGGATGACTTTGCAT+CGG | 0.531292 | 1.1:-75323255 | None:intergenic |
| TGCATTACTTCTGATGGTAA+AGG | 0.540385 | 1.1:+75323787 | MS.gene49962:CDS |
| TAAACGACGAAATGAAGGAT+TGG | 0.543647 | 1.1:-75322364 | None:intergenic |
| TTCAAGATGCTTTCAATTTG+GGG | 0.544526 | 1.1:-75323874 | None:intergenic |
| CAAGATGCTTTCAATTTGGG+GGG | 0.545334 | 1.1:-75323872 | None:intergenic |
| CTTGAGGATGCTGTATCTAA+GGG | 0.556289 | 1.1:-75322937 | None:intergenic |
| AAAAGTGGAAACAAGAACAT+TGG | 0.557206 | 1.1:+75322431 | MS.gene49962:CDS |
| TTCACTTGTCTGCATCCTTG+AGG | 0.559298 | 1.1:-75322953 | None:intergenic |
| AAGTGAATTTGGAAAATCCA+AGG | 0.561327 | 1.1:+75322969 | MS.gene49962:CDS |
| AACCGATGCAAAGTCATCCC+CGG | 0.568341 | 1.1:+75323253 | MS.gene49962:CDS |
| ACCATCAAATGCATCACTCC+AGG | 0.576816 | 1.1:-75323019 | None:intergenic |
| TGATAATCCACCTGATAGCT+GGG | 0.581837 | 1.1:-75323346 | None:intergenic |
| TATACTATTTGGAAAAGAGA+AGG | 0.590261 | 1.1:+75323707 | MS.gene49962:CDS |
| TTTCATTGTACCAAGGCTTG+GGG | 0.595728 | 1.1:+75322330 | MS.gene49962:CDS |
| TCAAGATGCTTTCAATTTGG+GGG | 0.597677 | 1.1:-75323873 | None:intergenic |
| CCTTAGATACAGCATCCTCA+AGG | 0.614597 | 1.1:+75322938 | MS.gene49962:CDS |
| AGTGAATTTGGAAAATCCAA+GGG | 0.635743 | 1.1:+75322970 | MS.gene49962:CDS |
| AGAAGATCACAAAGTCGACA+TGG | 0.636206 | 1.1:+75323810 | MS.gene49962:CDS |
| CAGGTGCTTTCATTGTACCA+AGG | 0.638706 | 1.1:+75322323 | MS.gene49962:CDS |
| CTCTGGCAGACCTTATCAGA+GGG | 0.640935 | 1.1:+75322994 | MS.gene49962:CDS |
| AAGCTGAAAAGAAGGCGCAG+AGG | 0.642022 | 1.1:+75323666 | MS.gene49962:CDS |
| CTGTACAATACTAATAACAC+AGG | 0.650569 | 1.1:+75322493 | MS.gene49962:CDS |
| GAAAGCAGAAAGTGATTCCG+GGG | 0.652721 | 1.1:-75323270 | None:intergenic |
| AGAGTGATACCTGAATAGAT+GGG | 0.654045 | 1.1:-75323071 | None:intergenic |
| ACTCTGGCAGACCTTATCAG+AGG | 0.672915 | 1.1:+75322993 | MS.gene49962:CDS |
| ATTGTCTGAAGCTACTTCTG+GGG | 0.678769 | 1.1:+75321290 | MS.gene49962:CDS |
| AGTATCAAGTGGATACAAGA+CGG | 0.683516 | 1.1:-75321337 | None:intergenic |
| TATTAGTATTGTACAGACGC+CGG | 0.694097 | 1.1:-75322486 | None:intergenic |
| CAAGACGGTGGTGCTAACAA+GGG | 0.715250 | 1.1:-75321322 | None:intergenic |
| ACAGACGCCGGACATAGTAG+CGG | 0.747106 | 1.1:-75322474 | None:intergenic |
| ATCAAGTGGATACAAGACGG+TGG | 0.749245 | 1.1:-75321334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAGAGATAAATAATTT+AGG | - | chr1.1:75323373-75323392 | None:intergenic | 15.0% |
| !! | AGTTAATAGTAAAATTCAAA+AGG | + | chr1.1:75323444-75323463 | MS.gene49962:intron | 15.0% |
| !! | TATAATTCATGAAACAATTT+AGG | + | chr1.1:75321455-75321474 | MS.gene49962:intron | 15.0% |
| !! | TTGAAATTAAGTTTATCAAA+GGG | + | chr1.1:75322621-75322640 | MS.gene49962:intron | 15.0% |
| !!! | ACTTAATTTCAAGTTAATTT+AGG | - | chr1.1:75322613-75322632 | None:intergenic | 15.0% |
| !!! | CTTAATTTCAAGTTAATTTA+GGG | - | chr1.1:75322612-75322631 | None:intergenic | 15.0% |
| !!! | TAATTGAAAAGTACAATATT+TGG | + | chr1.1:75322670-75322689 | MS.gene49962:intron | 15.0% |
| !!! | TTTATCATATTGTTTTATTG+TGG | + | chr1.1:75322209-75322228 | MS.gene49962:intron | 15.0% |
| !!! | TTTTGAATTTTACTATTAAC+TGG | - | chr1.1:75323445-75323464 | None:intergenic | 15.0% |
| !! | ATGTAGTTTATGAAAAAAAC+AGG | + | chr1.1:75321834-75321853 | MS.gene49962:intron | 20.0% |
| !! | CAAAAGAAAACTTGTAATAT+TGG | - | chr1.1:75322187-75322206 | None:intergenic | 20.0% |
| !! | CTTGAAATTAAGTTTATCAA+AGG | + | chr1.1:75322620-75322639 | MS.gene49962:intron | 20.0% |
| !! | TAATTAGCCAATAATCAATT+TGG | - | chr1.1:75321437-75321456 | None:intergenic | 20.0% |
| !! | TGTTGTTAAAAGAATAGATA+TGG | - | chr1.1:75323049-75323068 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCAAATACAAAC+AGG | - | chr1.1:75321507-75321526 | None:intergenic | 20.0% |
| !!! | TGTGTTAATATACAGATTTT+GGG | + | chr1.1:75323400-75323419 | MS.gene49962:intron | 20.0% |
| !!! | TTTGAAGATATAATTTGTGT+TGG | + | chr1.1:75321858-75321877 | MS.gene49962:intron | 20.0% |
| ! | AATCTGCAAAGAAAACAAAT+TGG | + | chr1.1:75322828-75322847 | MS.gene49962:intron | 25.0% |
| ! | AGAATCAATTATTCCAGATT+AGG | + | chr1.1:75323125-75323144 | MS.gene49962:intron | 25.0% |
| ! | AGACTATATTTGGAAAAAAG+TGG | + | chr1.1:75322416-75322435 | MS.gene49962:CDS | 25.0% |
| ! | ATAAATAAACGACGAAATGA+AGG | - | chr1.1:75322372-75322391 | None:intergenic | 25.0% |
| ! | CAAAAATAAGCCAATACAAA+CGG | + | chr1.1:75321943-75321962 | MS.gene49962:intron | 25.0% |
| ! | CTACAATTAAAGAGAAAATG+TGG | - | chr1.1:75322061-75322080 | None:intergenic | 25.0% |
| ! | TATACTATTTGGAAAAGAGA+AGG | + | chr1.1:75323707-75323726 | MS.gene49962:CDS | 25.0% |
| ! | TGAATGTTATCATTACCATT+TGG | - | chr1.1:75322159-75322178 | None:intergenic | 25.0% |
| ! | TGACATACTTATTTGTGATA+TGG | + | chr1.1:75322557-75322576 | MS.gene49962:intron | 25.0% |
| ! | TTTACTATTAACTGGAATCA+TGG | - | chr1.1:75323437-75323456 | None:intergenic | 25.0% |
| !! | AGAAAACCAAATGATAATGT+CGG | + | chr1.1:75321599-75321618 | MS.gene49962:intron | 25.0% |
| !! | ATAACCTGTATTTTCTTTGA+TGG | - | chr1.1:75321398-75321417 | None:intergenic | 25.0% |
| !! | CTACTTTAAGAGACTATATT+TGG | + | chr1.1:75322406-75322425 | MS.gene49962:CDS | 25.0% |
| !! | CTGTGTTAATATACAGATTT+TGG | + | chr1.1:75323399-75323418 | MS.gene49962:intron | 25.0% |
| !! | CTTTAAGAACATCTTGTATT+TGG | + | chr1.1:75321633-75321652 | MS.gene49962:intron | 25.0% |
| !! | GAGAATTTCTGATGTTTTAT+GGG | + | chr1.1:75322283-75322302 | MS.gene49962:CDS | 25.0% |
| !!! | ACAGGTTATTTTCCTTTTAT+TGG | + | chr1.1:75321409-75321428 | MS.gene49962:intron | 25.0% |
| !!! | AGATGTTTTGAATTTCCAAT+AGG | + | chr1.1:75323594-75323613 | MS.gene49962:intron | 25.0% |
| !!! | CAGGTTATTTTCCTTTTATT+GGG | + | chr1.1:75321410-75321429 | MS.gene49962:intron | 25.0% |
| !!! | TAAATTTTTTCACAGATCTG+TGG | + | chr1.1:75323484-75323503 | MS.gene49962:intron | 25.0% |
| !!! | TCGTCGTTTATTTATTTCTA+TGG | + | chr1.1:75322377-75322396 | MS.gene49962:CDS | 25.0% |
| AAAAGTGGAAACAAGAACAT+TGG | + | chr1.1:75322431-75322450 | MS.gene49962:CDS | 30.0% | |
| AAGTGAATTTGGAAAATCCA+AGG | + | chr1.1:75322969-75322988 | MS.gene49962:CDS | 30.0% | |
| AATAGTGACTTTACACCTAT+TGG | - | chr1.1:75323612-75323631 | None:intergenic | 30.0% | |
| AATTCTCCTACATAAGATAG+AGG | - | chr1.1:75322270-75322289 | None:intergenic | 30.0% | |
| ACGAAAACATCTTACAGTTT+AGG | + | chr1.1:75322021-75322040 | MS.gene49962:intron | 30.0% | |
| AGAACATCTTGTATTTGGAT+TGG | + | chr1.1:75321638-75321657 | MS.gene49962:intron | 30.0% | |
| AGTGAATTTGGAAAATCCAA+GGG | + | chr1.1:75322970-75322989 | MS.gene49962:CDS | 30.0% | |
| ATCAATTTGGACCCAATAAA+AGG | - | chr1.1:75321424-75321443 | None:intergenic | 30.0% | |
| ATTGGGTCCAAATTGATTAT+TGG | + | chr1.1:75321427-75321446 | MS.gene49962:intron | 30.0% | |
| CTGTACAATACTAATAACAC+AGG | + | chr1.1:75322493-75322512 | MS.gene49962:CDS | 30.0% | |
| CTTATCACAATAACTACTCT+AGG | + | chr1.1:75321716-75321735 | MS.gene49962:intron | 30.0% | |
| TCAATTAATGTCATGTTTGC+AGG | - | chr1.1:75322657-75322676 | None:intergenic | 30.0% | |
| TCATATAGTGTAACCTAATC+TGG | - | chr1.1:75323141-75323160 | None:intergenic | 30.0% | |
| TTATTGTGGCAAGATTAACA+AGG | + | chr1.1:75322223-75322242 | MS.gene49962:intron | 30.0% | |
| TTGAACTTCAGCTTGATATT+TGG | - | chr1.1:75321370-75321389 | None:intergenic | 30.0% | |
| ! | ATTTAGGTTAAGTGTGTGTT+TGG | + | chr1.1:75321471-75321490 | MS.gene49962:intron | 30.0% |
| ! | GGAGAATTTCTGATGTTTTA+TGG | + | chr1.1:75322282-75322301 | MS.gene49962:intron | 30.0% |
| !!! | TTGGTTTTACAAGTATCAAG+TGG | - | chr1.1:75321351-75321370 | None:intergenic | 30.0% |
| AAACATCTTTCATCAGCATG+TGG | - | chr1.1:75323582-75323601 | None:intergenic | 35.0% | |
| AACAACAAACCCATCTATTC+AGG | + | chr1.1:75323062-75323081 | MS.gene49962:CDS | 35.0% | |
| AAGAGTGATACCTGAATAGA+TGG | - | chr1.1:75323075-75323094 | None:intergenic | 35.0% | |
| AGAGTGATACCTGAATAGAT+GGG | - | chr1.1:75323074-75323093 | None:intergenic | 35.0% | |
| AGTATCAAGTGGATACAAGA+CGG | - | chr1.1:75321340-75321359 | None:intergenic | 35.0% | |
| ATCCATTGAAAAATCCCAAG+AGG | - | chr1.1:75323733-75323752 | None:intergenic | 35.0% | |
| ATCCTTGTCTAAAAAGAACG+CGG | + | chr1.1:75322769-75322788 | MS.gene49962:intron | 35.0% | |
| CAAACACCGACATTATCATT+TGG | - | chr1.1:75321608-75321627 | None:intergenic | 35.0% | |
| CAGCAAGGAAATAATGAGTT+TGG | - | chr1.1:75322878-75322897 | None:intergenic | 35.0% | |
| CTGAAACACAGACTACTAAA+GGG | + | chr1.1:75323215-75323234 | MS.gene49962:CDS | 35.0% | |
| CTTATCACAATAACTACTCC+AGG | + | chr1.1:75321991-75322010 | MS.gene49962:intron | 35.0% | |
| GTTGTTCCTCTATCTTATGT+AGG | + | chr1.1:75322261-75322280 | MS.gene49962:intron | 35.0% | |
| TAAACGACGAAATGAAGGAT+TGG | - | chr1.1:75322367-75322386 | None:intergenic | 35.0% | |
| TAGAGACTCCTGTTTGTATT+TGG | + | chr1.1:75321496-75321515 | MS.gene49962:intron | 35.0% | |
| TAGGTGTAAAGTCACTATTC+AGG | + | chr1.1:75323613-75323632 | MS.gene49962:intron | 35.0% | |
| TATTAGTATTGTACAGACGC+CGG | - | chr1.1:75322489-75322508 | None:intergenic | 35.0% | |
| TCAAGATGCTTTCAATTTGG+GGG | - | chr1.1:75323876-75323895 | None:intergenic | 35.0% | |
| TGACATACATCCGTTTGTAT+TGG | - | chr1.1:75321956-75321975 | None:intergenic | 35.0% | |
| TGCATTACTTCTGATGGTAA+AGG | + | chr1.1:75323787-75323806 | MS.gene49962:CDS | 35.0% | |
| TTAATGTCATGTTTGCAGGA+TGG | - | chr1.1:75322653-75322672 | None:intergenic | 35.0% | |
| ! | CAAATGATAATGTCGGTGTT+TGG | + | chr1.1:75321606-75321625 | MS.gene49962:intron | 35.0% |
| ! | GATGTTTTCGTAAACTATCC+TGG | - | chr1.1:75322012-75322031 | None:intergenic | 35.0% |
| !! | CTCATTATTTCCTTGCTGTT+AGG | + | chr1.1:75322880-75322899 | MS.gene49962:intron | 35.0% |
| !! | GCTTTCTCTGCTTTTATGTT+GGG | + | chr1.1:75323287-75323306 | MS.gene49962:CDS | 35.0% |
| !! | TGCTTTCTCTGCTTTTATGT+TGG | + | chr1.1:75323286-75323305 | MS.gene49962:CDS | 35.0% |
| ACTCGATCTTTAGCAGAACT+AGG | + | chr1.1:75322715-75322734 | MS.gene49962:intron | 40.0% | |
| AGAAAGCAGAAAGTGATTCC+GGG | - | chr1.1:75323274-75323293 | None:intergenic | 40.0% | |
| AGAAGATCACAAAGTCGACA+TGG | + | chr1.1:75323810-75323829 | MS.gene49962:CDS | 40.0% | |
| AGATTATGCACCTAACAGCA+AGG | - | chr1.1:75322893-75322912 | None:intergenic | 40.0% | |
| AGGATGCAGACAAGTGAATT+TGG | + | chr1.1:75322958-75322977 | MS.gene49962:CDS | 40.0% | |
| CAAGATGCTTTCAATTTGGG+GGG | - | chr1.1:75323875-75323894 | None:intergenic | 40.0% | |
| CCAGCCATCAAAGAAAATAC+AGG | + | chr1.1:75321391-75321410 | MS.gene49962:CDS | 40.0% | |
| CTTGAGGATGCTGTATCTAA+GGG | - | chr1.1:75322940-75322959 | None:intergenic | 40.0% | |
| CTTTCATTGTACCAAGGCTT+GGG | + | chr1.1:75322329-75322348 | MS.gene49962:CDS | 40.0% | |
| GAGAAAGCAGAAAGTGATTC+CGG | - | chr1.1:75323275-75323294 | None:intergenic | 40.0% | |
| GAGTACAGAAGCTGAAAAGA+AGG | + | chr1.1:75323658-75323677 | MS.gene49962:CDS | 40.0% | |
| GATCGAATGCAGTATACTGT+TGG | - | chr1.1:75323193-75323212 | None:intergenic | 40.0% | |
| GCTGAAACACAGACTACTAA+AGG | + | chr1.1:75323214-75323233 | MS.gene49962:CDS | 40.0% | |
| GGAAGCAATTTCTAAACGTC+AGG | + | chr1.1:75322304-75322323 | MS.gene49962:CDS | 40.0% | |
| TGATAATCCACCTGATAGCT+GGG | - | chr1.1:75323349-75323368 | None:intergenic | 40.0% | |
| TGGATTCTGATGCTCATCAT+TGG | + | chr1.1:75323830-75323849 | MS.gene49962:CDS | 40.0% | |
| TTTCACAGATCTGTGGTTTC+TGG | + | chr1.1:75323491-75323510 | MS.gene49962:intron | 40.0% | |
| TTTCATTGTACCAAGGCTTG+GGG | + | chr1.1:75322330-75322349 | MS.gene49962:CDS | 40.0% | |
| ! | AACCGCGTTCTTTTTAGACA+AGG | - | chr1.1:75322774-75322793 | None:intergenic | 40.0% |
| ! | ATTGTCTGAAGCTACTTCTG+GGG | + | chr1.1:75321290-75321309 | MS.gene49962:CDS | 40.0% |
| ! | CATTGTCTGAAGCTACTTCT+GGG | + | chr1.1:75321289-75321308 | MS.gene49962:CDS | 40.0% |
| ! | CTGGAGCACTCTATACTATT+TGG | + | chr1.1:75323696-75323715 | MS.gene49962:CDS | 40.0% |
| ! | GGTTTCTGGAGATGTATCTT+GGG | + | chr1.1:75323505-75323524 | MS.gene49962:intron | 40.0% |
| ! | TCATTGTCTGAAGCTACTTC+TGG | + | chr1.1:75321288-75321307 | MS.gene49962:CDS | 40.0% |
| ! | TGGTTTCTGGAGATGTATCT+TGG | + | chr1.1:75323504-75323523 | MS.gene49962:intron | 40.0% |
| ! | TTGATAATCCACCTGATAGC+TGG | - | chr1.1:75323350-75323369 | None:intergenic | 40.0% |
| !! | CCTGTATTTTCTTTGATGGC+TGG | - | chr1.1:75321394-75321413 | None:intergenic | 40.0% |
| !!! | GGGATTTTTCAATGGATTGC+AGG | + | chr1.1:75323736-75323755 | MS.gene49962:CDS | 40.0% |
| ACCATCAAATGCATCACTCC+AGG | - | chr1.1:75323022-75323041 | None:intergenic | 45.0% | |
| ACCTGGAGTGATGCATTTGA+TGG | + | chr1.1:75323018-75323037 | MS.gene49962:CDS | 45.0% | |
| ATCAAGTGGATACAAGACGG+TGG | - | chr1.1:75321337-75321356 | None:intergenic | 45.0% | |
| CAGCTCTGCATTACTTCTGA+TGG | + | chr1.1:75323781-75323800 | MS.gene49962:CDS | 45.0% | |
| CAGGTGCTTTCATTGTACCA+AGG | + | chr1.1:75322323-75322342 | MS.gene49962:CDS | 45.0% | |
| CCTTAGATACAGCATCCTCA+AGG | + | chr1.1:75322938-75322957 | MS.gene49962:CDS | 45.0% | |
| CCTTGAGGATGCTGTATCTA+AGG | - | chr1.1:75322941-75322960 | None:intergenic | 45.0% | |
| CGAATGCAGTATACTGTTGG+AGG | - | chr1.1:75323190-75323209 | None:intergenic | 45.0% | |
| GAAAGCAGAAAGTGATTCCG+GGG | - | chr1.1:75323273-75323292 | None:intergenic | 45.0% | |
| GCTTTCATTGTACCAAGGCT+TGG | + | chr1.1:75322328-75322347 | MS.gene49962:CDS | 45.0% | |
| TGCTTTCAATTTGGGGGGAT+TGG | - | chr1.1:75323870-75323889 | None:intergenic | 45.0% | |
| TGGAAAAGAGAAGGCCTCTT+GGG | + | chr1.1:75323716-75323735 | MS.gene49962:CDS | 45.0% | |
| TTCACTTGTCTGCATCCTTG+AGG | - | chr1.1:75322956-75322975 | None:intergenic | 45.0% | |
| TTGATTGCCGCTACTATGTC+CGG | + | chr1.1:75322467-75322486 | MS.gene49962:CDS | 45.0% | |
| TTGGAAAAGAGAAGGCCTCT+TGG | + | chr1.1:75323715-75323734 | MS.gene49962:CDS | 45.0% | |
| TTGGAAAATCCAAGGGACTC+TGG | + | chr1.1:75322977-75322996 | MS.gene49962:CDS | 45.0% | |
| !! | GGCCTCTTGGGATTTTTCAA+TGG | + | chr1.1:75323728-75323747 | MS.gene49962:CDS | 45.0% |
| !!! | CATTTTTTGTCCCCAAGCCT+TGG | - | chr1.1:75322343-75322362 | None:intergenic | 45.0% |
| AACCGATGCAAAGTCATCCC+CGG | + | chr1.1:75323253-75323272 | MS.gene49962:CDS | 50.0% | |
| ACTCCAGGTACCCTCTGATA+AGG | - | chr1.1:75323007-75323026 | None:intergenic | 50.0% | |
| ACTCTGGCAGACCTTATCAG+AGG | + | chr1.1:75322993-75323012 | MS.gene49962:CDS | 50.0% | |
| CAAACGCACACGATGCCAAA+TGG | + | chr1.1:75322141-75322160 | MS.gene49962:intron | 50.0% | |
| CATCAGCGCAGCATGTGTTT+GGG | + | chr1.1:75321661-75321680 | MS.gene49962:intron | 50.0% | |
| CATTTGGCATCGTGTGCGTT+TGG | - | chr1.1:75322143-75322162 | None:intergenic | 50.0% | |
| CTCTGGCAGACCTTATCAGA+GGG | + | chr1.1:75322994-75323013 | MS.gene49962:CDS | 50.0% | |
| GCTTGACATACCCAGCTATC+AGG | + | chr1.1:75323336-75323355 | MS.gene49962:CDS | 50.0% | |
| TGACATACCCAGCTATCAGG+TGG | + | chr1.1:75323339-75323358 | MS.gene49962:intron | 50.0% | |
| TTCCGGGGATGACTTTGCAT+CGG | - | chr1.1:75323258-75323277 | None:intergenic | 50.0% | |
| ! | AAGCTGAAAAGAAGGCGCAG+AGG | + | chr1.1:75323666-75323685 | MS.gene49962:CDS | 50.0% |
| ! | ACAAGACGGTGGTGCTAACA+AGG | - | chr1.1:75321326-75321345 | None:intergenic | 50.0% |
| ! | CAAGACGGTGGTGCTAACAA+GGG | - | chr1.1:75321325-75321344 | None:intergenic | 50.0% |
| !! | AGACCTTATCAGAGGGTACC+TGG | + | chr1.1:75323001-75323020 | MS.gene49962:CDS | 50.0% |
| !! | GAAGCTACTTCTGGGGCTAT+TGG | + | chr1.1:75321297-75321316 | MS.gene49962:CDS | 50.0% |
| AAGGCGCAGAGGACAATCTC+TGG | + | chr1.1:75323677-75323696 | MS.gene49962:CDS | 55.0% | |
| ACAGACGCCGGACATAGTAG+CGG | - | chr1.1:75322477-75322496 | None:intergenic | 55.0% | |
| GCATCAGCGCAGCATGTGTT+TGG | + | chr1.1:75321660-75321679 | MS.gene49962:intron | 55.0% | |
| TAAGGTCTGCCAGAGTCCCT+TGG | - | chr1.1:75322989-75323008 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 75321270 | 75323895 | 75321270 | ID=MS.gene49962 |
| chr1.1 | mRNA | 75321270 | 75323895 | 75321270 | ID=MS.gene49962.t1;Parent=MS.gene49962 |
| chr1.1 | exon | 75321270 | 75321412 | 75321270 | ID=MS.gene49962.t1.exon1;Parent=MS.gene49962.t1 |
| chr1.1 | CDS | 75321270 | 75321412 | 75321270 | ID=cds.MS.gene49962.t1;Parent=MS.gene49962.t1 |
| chr1.1 | exon | 75322283 | 75322514 | 75322283 | ID=MS.gene49962.t1.exon2;Parent=MS.gene49962.t1 |
| chr1.1 | CDS | 75322283 | 75322514 | 75322283 | ID=cds.MS.gene49962.t1;Parent=MS.gene49962.t1 |
| chr1.1 | exon | 75322937 | 75323083 | 75322937 | ID=MS.gene49962.t1.exon3;Parent=MS.gene49962.t1 |
| chr1.1 | CDS | 75322937 | 75323083 | 75322937 | ID=cds.MS.gene49962.t1;Parent=MS.gene49962.t1 |
| chr1.1 | exon | 75323197 | 75323357 | 75323197 | ID=MS.gene49962.t1.exon4;Parent=MS.gene49962.t1 |
| chr1.1 | CDS | 75323197 | 75323357 | 75323197 | ID=cds.MS.gene49962.t1;Parent=MS.gene49962.t1 |
| chr1.1 | exon | 75323616 | 75323895 | 75323616 | ID=MS.gene49962.t1.exon5;Parent=MS.gene49962.t1 |
| chr1.1 | CDS | 75323616 | 75323895 | 75323616 | ID=cds.MS.gene49962.t1;Parent=MS.gene49962.t1 |
| Gene Sequence |
| Protein sequence |
