AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057856


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057856.t1 MTR_4g016510 91.882 271 8 1 1 257 1 271 0.0 509
MS.gene057856.t1 MTR_7g068530 68.750 256 63 4 1 242 1 253 8.01e-125 356
MS.gene057856.t1 MTR_3g070460 63.281 256 80 1 1 242 1 256 1.04e-117 338
MS.gene057856.t1 MTR_7g068460 63.600 250 77 2 5 241 32 280 1.62e-115 333
MS.gene057856.t1 MTR_7g068550 60.156 256 86 2 1 242 1 254 4.22e-114 328
MS.gene057856.t1 MTR_7g068500 63.200 250 78 2 5 241 31 279 3.00e-113 327
MS.gene057856.t1 MTR_7g068470 62.000 250 80 3 5 241 1 248 7.71e-109 315
MS.gene057856.t1 MTR_7g068470 60.800 250 79 4 5 241 1 244 2.06e-104 304
MS.gene057856.t1 MTR_4g016500 65.702 242 12 4 25 266 281 451 2.22e-98 296
MS.gene057856.t1 MTR_7g068450 53.906 256 99 4 5 242 1 255 4.40e-90 268
MS.gene057856.t1 MTR_2g015500 34.322 236 129 5 6 219 4 235 7.99e-41 141
MS.gene057856.t1 MTR_2g015510 36.019 211 115 4 5 195 4 214 1.43e-40 141
MS.gene057856.t1 MTR_7g068520 35.200 250 51 4 5 241 2 153 7.29e-36 125
MS.gene057856.t1 MTR_4g105680 34.434 212 130 3 12 218 50 257 3.23e-34 125
MS.gene057856.t1 MTR_2g015480 29.016 193 110 5 13 195 78 253 7.34e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057856.t1 AT3G11210 60.156 256 88 1 1 242 1 256 2.76e-112 324
MS.gene057856.t1 AT2G38180 57.422 256 84 5 1 240 1 247 5.34e-96 285
MS.gene057856.t1 AT5G45920 37.619 210 112 4 5 195 2 211 4.58e-44 150
MS.gene057856.t1 AT5G45920 37.619 210 112 4 5 195 2 211 4.58e-44 150
MS.gene057856.t1 AT5G62930 33.476 233 132 3 5 218 1 229 4.52e-43 147
MS.gene057856.t1 AT5G62930 33.476 233 132 3 5 218 27 255 1.09e-42 147
MS.gene057856.t1 AT5G45920 36.559 186 99 4 5 171 2 187 5.37e-36 127
MS.gene057856.t1 AT5G45920 36.559 186 99 4 5 171 2 187 5.37e-36 127
MS.gene057856.t1 AT5G62930 33.136 169 104 2 55 218 7 171 1.47e-29 110

Find 64 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAATTCATGAAACTTTC+AGG 0.099366 4.4:+84502304 MS.gene057856:CDS
TTTCCCATTCAAAATGTTTC+TGG 0.167567 4.4:-84503686 None:intergenic
CATTGGTTATTGTGTACTTT+GGG 0.211907 4.4:+84502047 MS.gene057856:CDS
GAATTCAAGGCGTGCTGTTC+AGG 0.251854 4.4:+84501284 MS.gene057856:CDS
GACTTAAAGCAGTAATATAT+TGG 0.251971 4.4:+84503068 MS.gene057856:intron
TGATAGCTGATTCTTCAAAT+TGG 0.316352 4.4:-84503746 None:intergenic
GAAGATTATTATCCATCTTA+AGG 0.337002 4.4:+84502147 MS.gene057856:CDS
AGCACAATTTGAGGCCTTAC+TGG 0.340515 4.4:-84500505 None:intergenic
GATTCATTTGTCCTCTTTAG+TGG 0.350705 4.4:-84503093 None:intergenic
ACTCAGTTATAGACCTTTGC+TGG 0.352929 4.4:-84503773 None:intergenic
ACTTTATTCAGAAGCATGTT+TGG 0.363601 4.4:+84503122 MS.gene057856:CDS
TCATTGGTTATTGTGTACTT+TGG 0.375419 4.4:+84502046 MS.gene057856:CDS
TGCTGTTGAGCAACCATCAT+TGG 0.380272 4.4:+84502030 MS.gene057856:CDS
GAATCTTCAGCAAATTCATT+TGG 0.383216 4.4:-84503603 None:intergenic
AAGGCGTGCTGTTCAGGTTC+TGG 0.385053 4.4:+84501290 MS.gene057856:CDS
GTGATGACCATTCGATGGTT+TGG 0.395292 4.4:-84503724 None:intergenic
CATCCACATCCGTCTGGACT+TGG 0.410168 4.4:+84502085 MS.gene057856:CDS
AGGCCTCAAATTGTGCTGTT+TGG 0.412684 4.4:+84500511 MS.gene057856:CDS
TGAATTTGCGCCTCGTTGAC+TGG 0.414334 4.4:-84502291 None:intergenic
TCTATAGCAACTGGATCATA+TGG 0.419003 4.4:-84503627 None:intergenic
CAACTTAGTTATAGTGATGA+AGG 0.419570 4.4:+84500547 MS.gene057856:CDS
ACTTAAAGCAGTAATATATT+GGG 0.420900 4.4:+84503069 MS.gene057856:intron
CACTTCAGCAAAGGGATGAT+TGG 0.428841 4.4:+84503190 MS.gene057856:CDS
CTACTGTAAATGTCTCCAAC+TGG 0.444532 4.4:+84503658 MS.gene057856:CDS
CTGGTCTGCACTTCAGCAAA+GGG 0.483151 4.4:+84503182 MS.gene057856:CDS
GATACTGTGGTTGGAATTCA+AGG 0.484531 4.4:+84501271 MS.gene057856:CDS
GGTTCCAGTCGGCGTCTTCG+AGG 0.494429 4.4:-84503557 None:intergenic
AGGTCCTCGAAGACGCCGAC+TGG 0.497251 4.4:+84503553 MS.gene057856:CDS
TGCTTCTGAATAAAGTCTAC+AGG 0.500632 4.4:-84503115 None:intergenic
TCTATTCATCCACATCCGTC+TGG 0.505373 4.4:+84502079 MS.gene057856:CDS
AAGTACACAATAACCAATGA+TGG 0.517361 4.4:-84502043 None:intergenic
TTATGCGAGTCTTCTTCGAC+AGG 0.520334 4.4:-84502251 None:intergenic
ATTGGTTATTGTGTACTTTG+GGG 0.522389 4.4:+84502048 MS.gene057856:CDS
ATGTCAAGGTCATTGACCTC+TGG 0.522967 4.4:+84503163 MS.gene057856:CDS
ATTGATTTCCAGTGTAGACA+TGG 0.528208 4.4:-84503579 None:intergenic
TGTGGAATTCAACCTTAAGA+TGG 0.529846 4.4:-84502159 None:intergenic
ACATGAGGGTAGCAAGATAG+TGG 0.532909 4.4:+84503515 MS.gene057856:CDS
TGCATTTCCAAACCATCGAA+TGG 0.539312 4.4:+84503717 MS.gene057856:CDS
TCTGGTCTGCACTTCAGCAA+AGG 0.543201 4.4:+84503181 MS.gene057856:CDS
AATTGGTGATGACCATTCGA+TGG 0.544305 4.4:-84503729 None:intergenic
GAACCAAACAGCACAATTTG+AGG 0.544428 4.4:-84500514 None:intergenic
TGGAATTCATTTGTCACATG+AGG 0.558725 4.4:+84503500 MS.gene057856:CDS
GGAAAATGGTAGGACCAGTA+AGG 0.570962 4.4:+84500491 None:intergenic
GGACCAAGTCCAGACGGATG+TGG 0.572184 4.4:-84502088 None:intergenic
ACTGGAACCCATGTCTACAC+TGG 0.576439 4.4:+84503571 MS.gene057856:CDS
TTGGTTATTGTGTACTTTGG+GGG 0.579848 4.4:+84502049 MS.gene057856:CDS
ATATATTGGGACCACTAAAG+AGG 0.585513 4.4:+84503082 MS.gene057856:CDS
TGACCTTGACATTCATCTCA+TGG 0.586207 4.4:-84503152 None:intergenic
ATGTTTCTGGAAGTTCCAGT+TGG 0.594171 4.4:-84503673 None:intergenic
GTAGAGGAAGGGAAAATGGT+AGG 0.598344 4.4:+84500481 None:intergenic
TCTGGATACAATATTTCCCA+AGG 0.600454 4.4:+84501308 MS.gene057856:CDS
AGTGGTGAAAGAGATATTGA+AGG 0.604308 4.4:+84503533 MS.gene057856:CDS
ACTATAACTAAGTTGAACAA+TGG 0.604564 4.4:-84500539 None:intergenic
GGAATTCATTTGTCACATGA+GGG 0.607224 4.4:+84503501 MS.gene057856:CDS
CAGCTATCACAAACCAGCAA+AGG 0.609744 4.4:+84503760 MS.gene057856:CDS
TTGATTTCCAGTGTAGACAT+GGG 0.612254 4.4:-84503578 None:intergenic
GTGTAGACATGGGTTCCAGT+CGG 0.639424 4.4:-84503568 None:intergenic
ACATGAGGACCAAGTCCAGA+CGG 0.648484 4.4:-84502094 None:intergenic
TATTCTTCAAGGGGTACATG+AGG 0.652455 4.4:-84502109 None:intergenic
TACTTACGTGAAGCAGACAT+CGG 0.655680 4.4:-84503214 None:intergenic
ATTTGCGCCTCGTTGACTGG+AGG 0.661668 4.4:-84502288 None:intergenic
TTTGCTGAAGTGCAGACCAG+AGG 0.667155 4.4:-84503179 None:intergenic
CAGTTCTCCTCCAGTCAACG+AGG 0.676220 4.4:+84502281 MS.gene057856:CDS
GTGCCATGAGATGAATGTCA+AGG 0.722246 4.4:+84503149 MS.gene057856:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTACTTCAATTTTTAAAA+AGG - chr4.4:84501533-84501552 None:intergenic 10.0%
!!! TATTGATTTTTTTTTTGAAT+CGG - chr4.4:84500936-84500955 None:intergenic 10.0%
!! AACTCTAATGAATAAATTAT+TGG + chr4.4:84503046-84503065 MS.gene057856:intron 15.0%
!! ATAATTTCAGAAAATGAAAA+TGG - chr4.4:84502678-84502697 None:intergenic 15.0%
!! CAAAATGAATCTAAATATTA+CGG - chr4.4:84501935-84501954 None:intergenic 15.0%
!! TAAATATTACGGTAAAATTA+GGG - chr4.4:84501924-84501943 None:intergenic 15.0%
!! TAATTTATGGTAATTAATCA+AGG + chr4.4:84501417-84501436 MS.gene057856:intron 15.0%
!! TCAAAAAAAAAATCAATAGA+AGG + chr4.4:84500938-84500957 MS.gene057856:intron 15.0%
!! TGTAAAAAGAAAATCAAAAT+TGG - chr4.4:84502995-84503014 None:intergenic 15.0%
!!! TAATAAAAGTATAACAGAAT+AGG + chr4.4:84502479-84502498 MS.gene057856:intron 15.0%
!!! TATTTTCTTTTTAATCCAAA+AGG - chr4.4:84500874-84500893 None:intergenic 15.0%
!!! TTAATTAATTTGAGTGATAT+TGG + chr4.4:84501697-84501716 MS.gene057856:intron 15.0%
!!! TTGTTTTGATACATTTTATA+GGG + chr4.4:84503476-84503495 MS.gene057856:intron 15.0%
!!! TTTTCATCATGATTAATTTA+TGG + chr4.4:84501404-84501423 MS.gene057856:intron 15.0%
!! AAAAATGTGATCAAAAAATG+CGG - chr4.4:84503376-84503395 None:intergenic 20.0%
!! AAAAGTTACATGAGATATAT+TGG + chr4.4:84502841-84502860 MS.gene057856:intron 20.0%
!! AAGATTCATGCTTAATAAAA+TGG - chr4.4:84501384-84501403 None:intergenic 20.0%
!! ACTTAAAGCAGTAATATATT+GGG + chr4.4:84503069-84503088 MS.gene057856:intron 20.0%
!! ATTTCTATCTTTATATCCAA+CGG - chr4.4:84501828-84501847 None:intergenic 20.0%
!! CTAAATATTACGGTAAAATT+AGG - chr4.4:84501925-84501944 None:intergenic 20.0%
!! TATATATGCAATATTGTTCA+AGG - chr4.4:84501475-84501494 None:intergenic 20.0%
!!! AATATATCTCATGTAACTTT+TGG - chr4.4:84502842-84502861 None:intergenic 20.0%
!!! ATTTCTCTATAGCATTTTTA+TGG + chr4.4:84501190-84501209 MS.gene057856:intron 20.0%
!!! CTTGTTTTGATACATTTTAT+AGG + chr4.4:84503475-84503494 MS.gene057856:intron 20.0%
!!! TCATTTTCTGAAATTATTAG+TGG + chr4.4:84502681-84502700 MS.gene057856:intron 20.0%
! AACATAAAGGTTATAAGCTA+TGG - chr4.4:84502746-84502765 None:intergenic 25.0%
! AATAAGCGATATATAAGACT+TGG - chr4.4:84501749-84501768 None:intergenic 25.0%
! AATCACATAGCATAAATAGA+GGG - chr4.4:84502378-84502397 None:intergenic 25.0%
! AATTGCTGATCCAAAAAATA+CGG - chr4.4:84503331-84503350 None:intergenic 25.0%
! ACATAAAGGTTATAAGCTAT+GGG - chr4.4:84502745-84502764 None:intergenic 25.0%
! ATCAACATGCAAAACTAAAA+GGG - chr4.4:84500687-84500706 None:intergenic 25.0%
! CAATGTTTGACTAATTCTAA+TGG + chr4.4:84502219-84502238 MS.gene057856:intron 25.0%
! GAAGATTATTATCCATCTTA+AGG + chr4.4:84502147-84502166 MS.gene057856:CDS 25.0%
! GACTTAAAGCAGTAATATAT+TGG + chr4.4:84503068-84503087 MS.gene057856:intron 25.0%
! TAGGACATAAGGTAAAAAAA+TGG + chr4.4:84502498-84502517 MS.gene057856:intron 25.0%
! TATCAACATGCAAAACTAAA+AGG - chr4.4:84500688-84500707 None:intergenic 25.0%
! TCTCTGAATCTAGATAAATA+TGG + chr4.4:84500992-84501011 MS.gene057856:intron 25.0%
! TGAATATTCCTCATACTTAA+AGG + chr4.4:84501971-84501990 MS.gene057856:intron 25.0%
! TGTGAAAAGTTTAAACTCAT+TGG - chr4.4:84501216-84501235 None:intergenic 25.0%
! TTAAAGATCACAAAGCAAAA+TGG - chr4.4:84502003-84502022 None:intergenic 25.0%
! TTACATACAAGTCTTCAAAT+AGG + chr4.4:84503256-84503275 MS.gene057856:intron 25.0%
! TTCACACATTAACATTACAT+AGG + chr4.4:84501230-84501249 MS.gene057856:intron 25.0%
!! ACAAAAGAGAATATGAGTTT+TGG + chr4.4:84502452-84502471 MS.gene057856:intron 25.0%
!! ACTATAACTAAGTTGAACAA+TGG - chr4.4:84500542-84500561 None:intergenic 25.0%
!! ATTTTCTCTGTATTCTTCAA+GGG - chr4.4:84502122-84502141 None:intergenic 25.0%
!! GGTAAAAAAATGGTACATTT+TGG + chr4.4:84502508-84502527 MS.gene057856:intron 25.0%
!! GTAAAATTTTGAATCAACAC+AGG - chr4.4:84501362-84501381 None:intergenic 25.0%
!! TAAAAAAAACAGTGATAGTG+TGG - chr4.4:84502180-84502199 None:intergenic 25.0%
!! TATTTTCTCTGTATTCTTCA+AGG - chr4.4:84502123-84502142 None:intergenic 25.0%
!! TTAATTTGAGTGATATTGGA+CGG + chr4.4:84501701-84501720 MS.gene057856:intron 25.0%
!! TTTGATACATTTTATAGGGA+TGG + chr4.4:84503480-84503499 MS.gene057856:intron 25.0%
!!! AAATTTCTAAAACACAACTG+TGG - chr4.4:84503425-84503444 None:intergenic 25.0%
!!! ACAGTTGTGTTTTAGAAATT+TGG + chr4.4:84503424-84503443 MS.gene057856:intron 25.0%
AAAAAATCAATAGAAGGCAG+TGG + chr4.4:84500944-84500963 MS.gene057856:intron 30.0%
AACAAAATCTTAGCCGTTAA+CGG + chr4.4:84501652-84501671 MS.gene057856:intron 30.0%
AACACAAATGATCAATACCT+TGG - chr4.4:84501328-84501347 None:intergenic 30.0%
AAGTACACAATAACCAATGA+TGG - chr4.4:84502046-84502065 None:intergenic 30.0%
ACACAAATGATCAATACCTT+GGG - chr4.4:84501327-84501346 None:intergenic 30.0%
ATAACAAAACTATAGCGTAG+TGG - chr4.4:84501132-84501151 None:intergenic 30.0%
ATATTACGGTAAAATTAGGG+AGG - chr4.4:84501921-84501940 None:intergenic 30.0%
ATTGGTTATTGTGTACTTTG+GGG + chr4.4:84502048-84502067 MS.gene057856:CDS 30.0%
CAACTTAGTTATAGTGATGA+AGG + chr4.4:84500547-84500566 MS.gene057856:CDS 30.0%
CAATCACATAGCATAAATAG+AGG - chr4.4:84502379-84502398 None:intergenic 30.0%
GAATCTTCAGCAAATTCATT+TGG - chr4.4:84503606-84503625 None:intergenic 30.0%
GTATAACAGAATAGGACATA+AGG + chr4.4:84502487-84502506 MS.gene057856:intron 30.0%
TAATTTGAGTGATATTGGAC+GGG + chr4.4:84501702-84501721 MS.gene057856:intron 30.0%
TAGTTATAGTGATGAAGGTT+GGG + chr4.4:84500552-84500571 MS.gene057856:intron 30.0%
TATTACGGTAAAATTAGGGA+GGG - chr4.4:84501920-84501939 None:intergenic 30.0%
TGTTAAATGGTACCTAGTTA+AGG - chr4.4:84502416-84502435 None:intergenic 30.0%
TTAGTTATAGTGATGAAGGT+TGG + chr4.4:84500551-84500570 MS.gene057856:intron 30.0%
TTATGGTAATTAATCAAGGC+TGG + chr4.4:84501421-84501440 MS.gene057856:intron 30.0%
TTTCCCATTCAAAATGTTTC+TGG - chr4.4:84503689-84503708 None:intergenic 30.0%
! ACATTTTTCTACAGCGTTAA+GGG + chr4.4:84503388-84503407 MS.gene057856:intron 30.0%
! ACTTCCAGAAACATTTTGAA+TGG + chr4.4:84503682-84503701 MS.gene057856:CDS 30.0%
! ACTTTATTCAGAAGCATGTT+TGG + chr4.4:84503122-84503141 MS.gene057856:CDS 30.0%
! CATTGGTTATTGTGTACTTT+GGG + chr4.4:84502047-84502066 MS.gene057856:CDS 30.0%
! CTTCCAGAAACATTTTGAAT+GGG + chr4.4:84503683-84503702 MS.gene057856:CDS 30.0%
! GTCACATGTGTCTTATTAAA+AGG + chr4.4:84503446-84503465 MS.gene057856:intron 30.0%
! GTTCTAACCTGTTTGTTAAA+TGG - chr4.4:84502429-84502448 None:intergenic 30.0%
! GTTTTTACAGCCGTATTTTT+TGG + chr4.4:84503318-84503337 MS.gene057856:intron 30.0%
! TAGGCAGATATAATTTTGAG+AGG + chr4.4:84501249-84501268 MS.gene057856:intron 30.0%
! TCATTGGTTATTGTGTACTT+TGG + chr4.4:84502046-84502065 MS.gene057856:CDS 30.0%
! TGATAGCTGATTCTTCAAAT+TGG - chr4.4:84503749-84503768 None:intergenic 30.0%
! TTTTCTCTGTATTCTTCAAG+GGG - chr4.4:84502121-84502140 None:intergenic 30.0%
! TTTTGGATCAGCAATTAAGT+TGG + chr4.4:84503335-84503354 MS.gene057856:intron 30.0%
!! ATAATTTTGAGAGGATACTG+TGG + chr4.4:84501258-84501277 MS.gene057856:CDS 30.0%
AAATAAATGCGCCATTTGTG+GGG - chr4.4:84502777-84502796 None:intergenic 35.0%
AGTGGTGAAAGAGATATTGA+AGG + chr4.4:84503533-84503552 MS.gene057856:CDS 35.0%
AGTTATAGTGATGAAGGTTG+GGG + chr4.4:84500553-84500572 MS.gene057856:intron 35.0%
ATATATTGGGACCACTAAAG+AGG + chr4.4:84503082-84503101 MS.gene057856:CDS 35.0%
CCTAAGATAGTGTTTGACAA+CGG - chr4.4:84502570-84502589 None:intergenic 35.0%
CGCAAATTCATGAAACTTTC+AGG + chr4.4:84502304-84502323 MS.gene057856:CDS 35.0%
CTAGGTACCATTTAACAAAC+AGG + chr4.4:84502419-84502438 MS.gene057856:intron 35.0%
GAAATAAATGCGCCATTTGT+GGG - chr4.4:84502778-84502797 None:intergenic 35.0%
GATTCATTTGTCCTCTTTAG+TGG - chr4.4:84503096-84503115 None:intergenic 35.0%
GGAATTCATTTGTCACATGA+GGG + chr4.4:84503501-84503520 MS.gene057856:CDS 35.0%
GTTGATCTCTTAACCGTTAA+CGG - chr4.4:84501668-84501687 None:intergenic 35.0%
TAACGATGCATACCTTAACT+AGG + chr4.4:84502401-84502420 MS.gene057856:intron 35.0%
TACAAACTTGTATTCTCGCA+AGG + chr4.4:84500585-84500604 MS.gene057856:intron 35.0%
TCTATAGCAACTGGATCATA+TGG - chr4.4:84503630-84503649 None:intergenic 35.0%
TCTGGATACAATATTTCCCA+AGG + chr4.4:84501308-84501327 MS.gene057856:CDS 35.0%
TGAAATAAATGCGCCATTTG+TGG - chr4.4:84502779-84502798 None:intergenic 35.0%
TGATATTGCAGCTGCAATTT+CGG - chr4.4:84503289-84503308 None:intergenic 35.0%
TGATTGTGTCTGCAAAATCA+AGG + chr4.4:84502898-84502917 MS.gene057856:intron 35.0%
TGCTTCTGAATAAAGTCTAC+AGG - chr4.4:84503118-84503137 None:intergenic 35.0%
TGGAATTCATTTGTCACATG+AGG + chr4.4:84503500-84503519 MS.gene057856:CDS 35.0%
TGTGGAATTCAACCTTAAGA+TGG - chr4.4:84502162-84502181 None:intergenic 35.0%
TTGACAACGGACAACAAAAT+GGG - chr4.4:84502557-84502576 None:intergenic 35.0%
TTGATTTCCAGTGTAGACAT+GGG - chr4.4:84503581-84503600 None:intergenic 35.0%
TTGGTTATTGTGTACTTTGG+GGG + chr4.4:84502049-84502068 MS.gene057856:CDS 35.0%
TTTGACAACGGACAACAAAA+TGG - chr4.4:84502558-84502577 None:intergenic 35.0%
TTTGTATGTATGTGTCCAGT+TGG + chr4.4:84501605-84501624 MS.gene057856:intron 35.0%
! AAATTGACTAGCTCATGCTA+TGG + chr4.4:84501445-84501464 MS.gene057856:intron 35.0%
! AAGATTTTGTTGCAGGTAAC+AGG - chr4.4:84501643-84501662 None:intergenic 35.0%
! AGATTTTGTTGCAGGTAACA+GGG - chr4.4:84501642-84501661 None:intergenic 35.0%
! ATTGATTTCCAGTGTAGACA+TGG - chr4.4:84503582-84503601 None:intergenic 35.0%
! CACATTTTTCTACAGCGTTA+AGG + chr4.4:84503387-84503406 MS.gene057856:intron 35.0%
! GGTTGATTCCTTTAAGTATG+AGG - chr4.4:84501982-84502001 None:intergenic 35.0%
! GTAACTTTATGTGTCGACAT+CGG - chr4.4:84502649-84502668 None:intergenic 35.0%
! GTCTTTTCATCTATAGCAAC+TGG - chr4.4:84503639-84503658 None:intergenic 35.0%
! TCTCATGTAACTTTTGGTCA+TGG - chr4.4:84502836-84502855 None:intergenic 35.0%
! TGATTTTGCAGACACAATCA+CGG - chr4.4:84502898-84502917 None:intergenic 35.0%
!! TGAGATATATTGGTCTTCAG+AGG + chr4.4:84502851-84502870 MS.gene057856:intron 35.0%
AAGAACAGTACTGCATGCAA+TGG + chr4.4:84500841-84500860 MS.gene057856:intron 40.0%
AATAAATGCGCCATTTGTGG+GGG - chr4.4:84502776-84502795 None:intergenic 40.0%
ACGGTTAAGAGATCAACACA+CGG + chr4.4:84501671-84501690 MS.gene057856:intron 40.0%
ACTCAGTTATAGACCTTTGC+TGG - chr4.4:84503776-84503795 None:intergenic 40.0%
CCGTTGTCAAACACTATCTT+AGG + chr4.4:84502567-84502586 MS.gene057856:intron 40.0%
CTACTGTAAATGTCTCCAAC+TGG + chr4.4:84503658-84503677 MS.gene057856:CDS 40.0%
GAACCAAACAGCACAATTTG+AGG - chr4.4:84500517-84500536 None:intergenic 40.0%
GATACTGTGGTTGGAATTCA+AGG + chr4.4:84501271-84501290 MS.gene057856:CDS 40.0%
GGTAAAATTAGGGAGGGATT+CGG - chr4.4:84501914-84501933 None:intergenic 40.0%
TACTTACGTGAAGCAGACAT+CGG - chr4.4:84503217-84503236 None:intergenic 40.0%
TGACCTTGACATTCATCTCA+TGG - chr4.4:84503155-84503174 None:intergenic 40.0%
TGCATTTCCAAACCATCGAA+TGG + chr4.4:84503717-84503736 MS.gene057856:CDS 40.0%
TGGGGGAAGATACAACATAA+AGG - chr4.4:84502759-84502778 None:intergenic 40.0%
! AAAATCAAGGTTTTCGCCTC+TGG + chr4.4:84502911-84502930 MS.gene057856:intron 40.0%
! AAATCAAGGTTTTCGCCTCT+GGG + chr4.4:84502912-84502931 MS.gene057856:intron 40.0%
! AACGGCTAAGATTTTGTTGC+AGG - chr4.4:84501650-84501669 None:intergenic 40.0%
! GCATCGACACTTTAGATCAA+AGG + chr4.4:84502612-84502631 MS.gene057856:intron 40.0%
! GTTCTGATTGCAACGACTTT+TGG + chr4.4:84502326-84502345 MS.gene057856:intron 40.0%
! TATTCTTCAAGGGGTACATG+AGG - chr4.4:84502112-84502131 None:intergenic 40.0%
! TGCAATGGAACAGTTCCTTT+TGG + chr4.4:84500856-84500875 MS.gene057856:intron 40.0%
!! AATTGGTGATGACCATTCGA+TGG - chr4.4:84503732-84503751 None:intergenic 40.0%
!! ATGTTTCTGGAAGTTCCAGT+TGG - chr4.4:84503676-84503695 None:intergenic 40.0%
!! TTTTGAGAGGATACTGTGGT+TGG + chr4.4:84501262-84501281 MS.gene057856:CDS 40.0%
AAAGCCAATGCACCACTCAA+CGG - chr4.4:84501800-84501819 None:intergenic 45.0%
ACATGAGGGTAGCAAGATAG+TGG + chr4.4:84503515-84503534 MS.gene057856:CDS 45.0%
ATGGGCACTAACACATGCAT+TGG - chr4.4:84502727-84502746 None:intergenic 45.0%
ATGTCAAGGTCATTGACCTC+TGG + chr4.4:84503163-84503182 MS.gene057856:CDS 45.0%
CACTTCAGCAAAGGGATGAT+TGG + chr4.4:84503190-84503209 MS.gene057856:CDS 45.0%
CAGCTATCACAAACCAGCAA+AGG + chr4.4:84503760-84503779 MS.gene057856:CDS 45.0%
GATCATCTATAGCCGTTGAG+TGG + chr4.4:84501785-84501804 MS.gene057856:intron 45.0%
GCGGCAGTTTGTAAAACTGT+TGG - chr4.4:84501868-84501887 None:intergenic 45.0%
GTGATGACCATTCGATGGTT+TGG - chr4.4:84503727-84503746 None:intergenic 45.0%
GTGCCATGAGATGAATGTCA+AGG + chr4.4:84503149-84503168 MS.gene057856:CDS 45.0%
GTTGTATCTTCCCCCACAAA+TGG + chr4.4:84502763-84502782 MS.gene057856:intron 45.0%
TATGCCAGTGTTGTCAATCG+CGG + chr4.4:84501077-84501096 MS.gene057856:intron 45.0%
TCTATTCATCCACATCCGTC+TGG + chr4.4:84502079-84502098 MS.gene057856:CDS 45.0%
TGCAGACACAATCACGGTTA+TGG - chr4.4:84502892-84502911 None:intergenic 45.0%
TGCTGTTGAGCAACCATCAT+TGG + chr4.4:84502030-84502049 MS.gene057856:CDS 45.0%
TTATGCGAGTCTTCTTCGAC+AGG - chr4.4:84502254-84502273 None:intergenic 45.0%
TTGAGTGATATTGGACGGGA+TGG + chr4.4:84501706-84501725 MS.gene057856:intron 45.0%
! AATCAAGGTTTTCGCCTCTG+GGG + chr4.4:84502913-84502932 MS.gene057856:intron 45.0%
! AGCACAATTTGAGGCCTTAC+TGG - chr4.4:84500508-84500527 None:intergenic 45.0%
! AGGCCTCAAATTGTGCTGTT+TGG + chr4.4:84500511-84500530 MS.gene057856:CDS 45.0%
! TATGTGTCGACATCGGTATC+TGG - chr4.4:84502642-84502661 None:intergenic 45.0%
!! CTAAAGTGTCGATGCTACGT+AGG - chr4.4:84502607-84502626 None:intergenic 45.0%
!!! GCATTGGCTTTTAGTACCGT+TGG + chr4.4:84501809-84501828 MS.gene057856:intron 45.0%
ACATGAGGACCAAGTCCAGA+CGG - chr4.4:84502097-84502116 None:intergenic 50.0%
ACTGGAACCCATGTCTACAC+TGG + chr4.4:84503571-84503590 MS.gene057856:CDS 50.0%
AGTGATATTGGACGGGATGG+AGG + chr4.4:84501709-84501728 MS.gene057856:intron 50.0%
ATAGCCGTTGAGTGGTGCAT+TGG + chr4.4:84501793-84501812 MS.gene057856:intron 50.0%
CTATCCGCGATTGACAACAC+TGG - chr4.4:84501084-84501103 None:intergenic 50.0%
CTGGTCTGCACTTCAGCAAA+GGG + chr4.4:84503182-84503201 MS.gene057856:CDS 50.0%
GTGATATTGGACGGGATGGA+GGG + chr4.4:84501710-84501729 MS.gene057856:intron 50.0%
GTGTAGACATGGGTTCCAGT+CGG - chr4.4:84503571-84503590 None:intergenic 50.0%
TCTGGTCTGCACTTCAGCAA+AGG + chr4.4:84503181-84503200 MS.gene057856:CDS 50.0%
TGAATTTGCGCCTCGTTGAC+TGG - chr4.4:84502294-84502313 None:intergenic 50.0%
TGTTGCAGGTAACAGGGCTT+CGG - chr4.4:84501636-84501655 None:intergenic 50.0%
TTTGCTGAAGTGCAGACCAG+AGG - chr4.4:84503182-84503201 None:intergenic 50.0%
! GAATTCAAGGCGTGCTGTTC+AGG + chr4.4:84501284-84501303 MS.gene057856:CDS 50.0%
!!! TTTTCGCCTCTGGGGCTTTT+GGG + chr4.4:84502921-84502940 MS.gene057856:intron 50.0%
AGGGCTTCGGATGATCCAAC+TGG - chr4.4:84501623-84501642 None:intergenic 55.0%
CAGTTCTCCTCCAGTCAACG+AGG + chr4.4:84502281-84502300 MS.gene057856:CDS 55.0%
CATCCACATCCGTCTGGACT+TGG + chr4.4:84502085-84502104 MS.gene057856:CDS 55.0%
GGAGGGATTCGGATCCTCTT+CGG - chr4.4:84501903-84501922 None:intergenic 55.0%
! AAGGCGTGCTGTTCAGGTTC+TGG + chr4.4:84501290-84501309 MS.gene057856:CDS 55.0%
! ATTTGCGCCTCGTTGACTGG+AGG - chr4.4:84502291-84502310 None:intergenic 55.0%
! GATCCTCTTCGGCTTGTGCA+TGG - chr4.4:84501892-84501911 None:intergenic 55.0%
! TCTTCGGCTTGTGCATGGTG+CGG - chr4.4:84501887-84501906 None:intergenic 55.0%
!!! GTTTTCGCCTCTGGGGCTTT+TGG + chr4.4:84502920-84502939 MS.gene057856:intron 55.0%
GCACCATGCACAAGCCGAAG+AGG + chr4.4:84501886-84501905 MS.gene057856:intron 60.0%
GGACCAAGTCCAGACGGATG+TGG - chr4.4:84502091-84502110 None:intergenic 60.0%
ACGACGCCCAAAAGCCCCAG+AGG - chr4.4:84502930-84502949 None:intergenic 65.0%
AGGTCCTCGAAGACGCCGAC+TGG + chr4.4:84503553-84503572 MS.gene057856:CDS 65.0%
GGTTCCAGTCGGCGTCTTCG+AGG - chr4.4:84503560-84503579 None:intergenic 65.0%
TTGGACGGGATGGAGGGAGC+TGG + chr4.4:84501716-84501735 MS.gene057856:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 84500496 84503812 84500496 ID=MS.gene057856
chr4.4 mRNA 84500496 84503812 84500496 ID=MS.gene057856.t1;Parent=MS.gene057856
chr4.4 exon 84500496 84500568 84500496 ID=MS.gene057856.t1.exon1;Parent=MS.gene057856.t1
chr4.4 CDS 84500496 84500568 84500496 ID=cds.MS.gene057856.t1;Parent=MS.gene057856.t1
chr4.4 exon 84501256 84501329 84501256 ID=MS.gene057856.t1.exon2;Parent=MS.gene057856.t1
chr4.4 CDS 84501256 84501329 84501256 ID=cds.MS.gene057856.t1;Parent=MS.gene057856.t1
chr4.4 exon 84502028 84502168 84502028 ID=MS.gene057856.t1.exon3;Parent=MS.gene057856.t1
chr4.4 CDS 84502028 84502168 84502028 ID=cds.MS.gene057856.t1;Parent=MS.gene057856.t1
chr4.4 exon 84502249 84502325 84502249 ID=MS.gene057856.t1.exon4;Parent=MS.gene057856.t1
chr4.4 CDS 84502249 84502325 84502249 ID=cds.MS.gene057856.t1;Parent=MS.gene057856.t1
chr4.4 exon 84503080 84503229 84503080 ID=MS.gene057856.t1.exon5;Parent=MS.gene057856.t1
chr4.4 CDS 84503080 84503229 84503080 ID=cds.MS.gene057856.t1;Parent=MS.gene057856.t1
chr4.4 exon 84503497 84503812 84503497 ID=MS.gene057856.t1.exon6;Parent=MS.gene057856.t1
chr4.4 CDS 84503497 84503812 84503497 ID=cds.MS.gene057856.t1;Parent=MS.gene057856.t1
Gene Sequence

>MS.gene057856

ATGGTAGGACCAGTAAGGCCTCAAATTGTGCTGTTTGGTTCTTCCATTGTTCAACTTAGTTATAGTGATGAAGGTTGGGGATCTATTCTTACAAACTTGTATTCTCGCAAGGTACTTAGTTATATATATTATTTTATGTTGTTCTTGTTCATACTATTATATTATTTATGATTAAAAATTGTAAATAACCCTTTTAGTTTTGCATGTTGATATAAAATATGAAATCAAGACTTGCAATTTTTTGTCATGATTAAGCAATTATTAACAAGTTGTTTTTTTCAATAGAGAAGTTGTTATTGTGAACTATGAACTTACAATATTTCTTCTTAGTTTTTGTTTATCTTCAAGAACAGTACTGCATGCAATGGAACAGTTCCTTTTGGATTAAAAAGAAAATAATATTATATGAATATATAAAAATATTCAATAAATTTTTGCCGATTCAAAAAAAAAATCAATAGAAGGCAGTGGTCACATGTTGAGAACAATTTTTTAATCTCTGAATCTAGATAAATATGGTACAATATTAGAGATGAGTGTATAGATAAAATTTGTATAAACAGAAAAAATGTTCTAGTGTTTATGCCAGTGTTGTCAATCGCGGATAGTGAAAGATAATAGTTTGTTCAAATTCCACTACGCTATAGTTTTGTTATATAAATAGCGTGTCTTGAAATAATAGTGATTTGTTCAAATTTCTCTATAGCATTTTTATGGCCAATGAGTTTAAACTTTTCACACATTAACATTACATAGGCAGATATAATTTTGAGAGGATACTGTGGTTGGAATTCAAGGCGTGCTGTTCAGGTTCTGGATACAATATTTCCCAAGGTATTGATCATTTGTGTTAATCATACATGCCTGTGTTGATTCAAAATTTTACCATTTTATTAAGCATGAATCTTTTTTCATCATGATTAATTTATGGTAATTAATCAAGGCTGGTAAATTGACTAGCTCATGCTATGGACTACCTTGAACAATATTGCATATATAAACTTAGAATTGATCATGTACATATTATGAACATGCCTTTTTAAAAATTGAAGTAATTAAATGCATCATATTAAACTTGAAATCACAATTACAATACGTGTATGCATATGTTTGTATGTATGTGTCCAGTTGGATCATCCGAAGCCCTGTTACCTGCAACAAAATCTTAGCCGTTAACGGTTAAGAGATCAACACACGGTCGTTAATTAATTTGAGTGATATTGGACGGGATGGAGGGAGCTGGAGAGTTTCCAAGTCTTATATATCGCTTATTTATATGTGTGTGTAGTGATCATCTATAGCCGTTGAGTGGTGCATTGGCTTTTAGTACCGTTGGATATAAAGATAGAAATTTTTATCTGTTTAAAATCCAACAGTTTTACAAACTGCCGCACCATGCACAAGCCGAAGAGGATCCGAATCCCTCCCTAATTTTACCGTAATATTTAGATTCATTTTGTACAATATGATTACTTTGAATATTCCTCATACTTAAAGGAATCAACCATTTTGCTTTGTGATCTTTAAATCAGAATGCTGTTGAGCAACCATCATTGGTTATTGTGTACTTTGGGGGCAATGACTCTATTCATCCACATCCGTCTGGACTTGGTCCTCATGTACCCCTTGAAGAATACAGAGAAAATATGAAGAAGATTATTATCCATCTTAAGGTTGAATTCCACACTATCACTGTTTTTTTTATTTGTCATGTTTATACTAACAATGTTTGACTAATTCTAATGGTTTGCAGAGCCTGTCGAAGAAGACTCGCATAATATTGCTCAGTTCTCCTCCAGTCAACGAGGCGCAAATTCATGAAACTTTCAGGTTCTGATTGCAACGACTTTTGGTTCACTCATATTTTATAGTTGTGATGCCCTCTATTTATGCTATGTGATTGAATAACGATGCATACCTTAACTAGGTACCATTTAACAAACAGGTTAGAACAAAACAAAAGAGAATATGAGTTTTGGCATATAATAAAAGTATAACAGAATAGGACATAAGGTAAAAAAATGGTACATTTTGGTTTCACAAAACAAAACAGACTCTCCCATTTTGTTGTCCGTTGTCAAACACTATCTTAGGTTCATTGCTGATAACCTACGTAGCATCGACACTTTAGATCAAAGGTGCACCAGATACCGATGTCGACACATAAAGTTACATTCTACCATTTTCATTTTCTGAAATTATTAGTGGTTTCTACGTGAGTATCATGTCCAATGCATGTGTTAGTGCCCATAGCTTATAACCTTTATGTTGTATCTTCCCCCACAAATGGCGCATTTATTTCACATAGTTCAAGATTGTTTATAAATGAAAACTTTACCATGACCAAAAGTTACATGAGATATATTGGTCTTCAGAGGCTTTTAAATTGTCGTCCATAACCGTGATTGTGTCTGCAAAATCAAGGTTTTCGCCTCTGGGGCTTTTGGGCGTCGTGTGATCTTTTATGTAAACTAACATGATCTGAATCAATCTTGACCAATTTTGATTTTCTTTTTACATGATACTATTCAATGTACATTTCAATCATACAACTCTAATGAATAAATTATTGGACTTAAAGCAGTAATATATTGGGACCACTAAAGAGGACAAATGAATCCTGTAGACTTTATTCAGAAGCATGTTTGGAGTTGTGCCATGAGATGAATGTCAAGGTCATTGACCTCTGGTCTGCACTTCAGCAAAGGGATGATTGGTCCGATGTCTGCTTCACGTAAGTATTGTTTATGACAATTGCTATTACATACAAGTCTTCAAATAGGTGCACGTCCGAAATTGCAGCTGCAATATCAAGTTCTTATGTTTTTACAGCCGTATTTTTTGGATCAGCAATTAAGTTGGATCAGCATTATTTGACCGCATTTTTTGATCACATTTTTCTACAGCGTTAAGGGTCGCGATGTGACCACAGTTGTGTTTTAGAAATTTGGTCACATGTGTCTTATTAAAAGGCTCAAACTTGTTTTGATACATTTTATAGGGATGGAATTCATTTGTCACATGAGGGTAGCAAGATAGTGGTGAAAGAGATATTGAAGGTCCTCGAAGACGCCGACTGGAACCCATGTCTACACTGGAAATCAATGCCAAATGAATTTGCTGAAGATTCGCCATATGATCCAGTTGCTATAGATGAAAAGACTACTGTAAATGTCTCCAACTGGAACTTCCAGAAACATTTTGAATGGGAAAAAGCTTTGTGCATTTCCAAACCATCGAATGGTCATCACCAATTTGAAGAATCAGCTATCACAAACCAGCAAAGGTCTATAACTGAGTTCAAGAAAAATATTTGA

Protein sequence

>MS.gene057856.t1

MVGPVRPQIVLFGSSIVQLSYSDEDIILRGYCGWNSRRAVQVLDTIFPKNAVEQPSLVIVYFGGNDSIHPHPSGLGPHVPLEEYRENMKKIIIHLKSLSKKTRIILLSSPPVNEAQIHETFSNILGPLKRTNESCRLYSEACLELCHEMNVKVIDLWSALQQRDDWSDVCFTDGIHLSHEGSKIVVKEILKVLEDADWNPCLHWKSMPNEFAEDSPYDPVAIDEKTTVNVSNWNFQKHFEWEKALCISKPSNGHHQFEESAITNQQRSITEFKKNI