Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50293.t1 | XP_003605064.2 | 79.7 | 276 | 33 | 2 | 20 | 289 | 28 | 286 | 8.70E-110 | 406.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50293.t1 | P54168 | 35.3 | 204 | 104 | 6 | 67 | 267 | 1 | 179 | 4.8e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50293.t1 | G7JDD3 | 79.7 | 276 | 33 | 2 | 20 | 289 | 28 | 286 | 6.2e-110 | 406.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene50293 | 0.807076 | 6.03E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene50293 | 0.814998 | 1.16E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene50293 | 0.810192 | 1.30E-50 | -1.69E-46 |
| MS.gene051064 | MS.gene50293 | 0.807757 | 4.33E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene50293 | 0.836545 | 8.79E-57 | -1.69E-46 |
| MS.gene052309 | MS.gene50293 | -0.841753 | 3.92E-58 | -1.69E-46 |
| MS.gene052358 | MS.gene50293 | -0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene056087 | MS.gene50293 | 0.819441 | 1.16E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene50293 | 0.823261 | 1.52E-53 | -1.69E-46 |
| MS.gene058498 | MS.gene50293 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene50293 | 0.804893 | 1.74E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene50293 | -0.829696 | 4.46E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50293.t1 | MTR_4g023480 | 91.111 | 270 | 13 | 2 | 20 | 289 | 28 | 286 | 2.78e-166 | 462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50293.t1 | AT1G17330 | 77.523 | 218 | 49 | 0 | 72 | 289 | 5 | 222 | 1.55e-119 | 342 |
Find 64 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAGCTTCTCATGAAAA+TGG | 0.305518 | 4.3:-74809527 | None:intergenic |
| CGAGCAAGGTGTGCTGTTGC+AGG | 0.313780 | 4.3:+74807739 | MS.gene50293:CDS |
| TTTGAAGATCATCAAAGAAA+TGG | 0.317424 | 4.3:+74808476 | MS.gene50293:CDS |
| GCCAAGATCTGATCTATCTA+AGG | 0.320518 | 4.3:+74809467 | MS.gene50293:CDS |
| ACTGAACGGAGTCCAGAATT+TGG | 0.354191 | 4.3:+74809180 | MS.gene50293:CDS |
| CTCATGATGCGGCACATGTT+TGG | 0.359860 | 4.3:+74807851 | MS.gene50293:CDS |
| TCTTGGACAACACCAAATTC+TGG | 0.364335 | 4.3:-74809192 | None:intergenic |
| CTTGATGCTATTGGTGCTAT+AGG | 0.384019 | 4.3:+74809225 | MS.gene50293:CDS |
| TGGGAAAGGTGTGCTGTTGC+AGG | 0.392172 | 4.3:+74807688 | MS.gene50293:CDS |
| GCTGCACTGCTCCATGATAT+AGG | 0.400352 | 4.3:+74808043 | MS.gene50293:CDS |
| TCCTTAGATAGATCAGATCT+TGG | 0.401064 | 4.3:-74809468 | None:intergenic |
| CTCTCCCTTGCCACCGAGGA+AGG | 0.423845 | 4.3:+74807892 | MS.gene50293:CDS |
| TTGAAGATCATCAAAGAAAT+GGG | 0.433662 | 4.3:+74808477 | MS.gene50293:CDS |
| AAAGAGGAGGTGACGGGAAA+AGG | 0.434863 | 4.3:+74809153 | MS.gene50293:CDS |
| CATCAAGCCTATCAGCATCT+TGG | 0.454662 | 4.3:-74809209 | None:intergenic |
| ATTGCACGTTGCTTCACATT+CGG | 0.458789 | 4.3:+74809405 | MS.gene50293:CDS |
| GGAGAGAAGGCACAAGTTCA+TGG | 0.459970 | 4.3:+74809773 | MS.gene50293:CDS |
| GGCAAAGGAGGGCGGAGAGA+AGG | 0.460292 | 4.3:+74809760 | MS.gene50293:CDS |
| CTCTTCTGACCCGCATTCCA+TGG | 0.460854 | 4.3:+74807918 | MS.gene50293:CDS |
| GCTGATAGGCTTGATGCTAT+TGG | 0.472702 | 4.3:+74809216 | MS.gene50293:CDS |
| GTGTTGTCCAAGATGCTGAT+AGG | 0.474522 | 4.3:+74809202 | MS.gene50293:CDS |
| TCAGATCTTGGCAAAATAGC+AGG | 0.474774 | 4.3:-74809456 | None:intergenic |
| TCTTGAGGAAGAGGGAGTTG+AGG | 0.475838 | 4.3:+74808434 | MS.gene50293:CDS |
| TTTGTTGGCTCGAGTGGGAA+AGG | 0.491177 | 4.3:+74807674 | MS.gene50293:CDS |
| TCATCATATCTTTAAGCTTG+AGG | 0.493256 | 4.3:-74809545 | None:intergenic |
| ATGATGCGGCACATGTTTGG+AGG | 0.501839 | 4.3:+74807854 | MS.gene50293:CDS |
| CACGTTGCTTCACATTCGGC+GGG | 0.506510 | 4.3:+74809409 | MS.gene50293:CDS |
| ATAGCTGCTTACCTATATCA+TGG | 0.507019 | 4.3:-74808054 | None:intergenic |
| TAGGATAGTTACAATTTCCA+TGG | 0.508969 | 4.3:-74807935 | None:intergenic |
| GTCAGAAGAGAGGCCTTCCT+CGG | 0.523559 | 4.3:-74807905 | None:intergenic |
| CATTTCAGGCTGGGCAAAGG+AGG | 0.525095 | 4.3:+74809748 | MS.gene50293:intron |
| TCAAAGAGTTCTACGACGAA+TGG | 0.526682 | 4.3:+74809805 | MS.gene50293:CDS |
| AATAAGAAAGGCTGAGGCGT+TGG | 0.532558 | 4.3:+74807798 | MS.gene50293:CDS |
| AGAGGCCTTCCTCGGTGGCA+AGG | 0.535275 | 4.3:-74807897 | None:intergenic |
| ATTTCAGGCTGGGCAAAGGA+GGG | 0.541101 | 4.3:+74809749 | MS.gene50293:intron |
| TTACAATTTCCATGGAATGC+GGG | 0.542408 | 4.3:-74807927 | None:intergenic |
| GAGGCCTTCCTCGGTGGCAA+GGG | 0.544423 | 4.3:-74807896 | None:intergenic |
| ATCCATTTCAGGCTGGGCAA+AGG | 0.545547 | 4.3:+74809745 | MS.gene50293:intron |
| TGGTTGAGAAAGCGATGAAA+GGG | 0.553284 | 4.3:+74807818 | MS.gene50293:CDS |
| TTGGTTGAGAAAGCGATGAA+AGG | 0.561138 | 4.3:+74807817 | MS.gene50293:CDS |
| TTCTATGCTTTCTGTCTGTG+AGG | 0.564633 | 4.3:+74807203 | MS.gene50293:CDS |
| GATCATATATTTCGCGAGCA+AGG | 0.564655 | 4.3:+74807725 | MS.gene50293:CDS |
| CGGTGGCAAGGGAGAGAGCA+AGG | 0.570258 | 4.3:-74807885 | None:intergenic |
| AAGAGAGACGATGGAAAAGA+CGG | 0.574216 | 4.3:+74807771 | MS.gene50293:CDS |
| TCAGGCTGGGCAAAGGAGGG+CGG | 0.579737 | 4.3:+74809752 | MS.gene50293:intron |
| TGATGCGGCACATGTTTGGA+GGG | 0.590520 | 4.3:+74807855 | MS.gene50293:CDS |
| AAAGACGGACACAATAAGAA+AGG | 0.590777 | 4.3:+74807786 | MS.gene50293:CDS |
| ACAGACAGAAAGCATAGAAG+TGG | 0.592793 | 4.3:-74807199 | None:intergenic |
| GTTACAATTTCCATGGAATG+CGG | 0.593875 | 4.3:-74807928 | None:intergenic |
| TGCTCTCTCCCTTGCCACCG+AGG | 0.611184 | 4.3:+74807888 | MS.gene50293:CDS |
| TGGAATGCGGGTCAGAAGAG+AGG | 0.617247 | 4.3:-74807915 | None:intergenic |
| GCACGTTGCTTCACATTCGG+CGG | 0.624085 | 4.3:+74809408 | MS.gene50293:CDS |
| CATTCGGCGGGAGTAAGAAG+AGG | 0.625922 | 4.3:+74809421 | MS.gene50293:CDS |
| GAGTTCTACGACGAATGGAA+CGG | 0.628121 | 4.3:+74809810 | MS.gene50293:CDS |
| GGACACAATAAGAAAGGCTG+AGG | 0.631192 | 4.3:+74807792 | MS.gene50293:CDS |
| CGTTGTAACAAGAGAGACGA+TGG | 0.634960 | 4.3:+74807762 | MS.gene50293:CDS |
| GAATGACGCTTCTCATGATG+CGG | 0.637516 | 4.3:+74807840 | MS.gene50293:CDS |
| ATTCGGCGGGAGTAAGAAGA+GGG | 0.649996 | 4.3:+74809422 | MS.gene50293:CDS |
| TAAAGATATGATGAAAACCA+AGG | 0.666397 | 4.3:+74809554 | MS.gene50293:CDS |
| AGAAGAGAGGCCTTCCTCGG+TGG | 0.681062 | 4.3:-74807902 | None:intergenic |
| CGGGAAAAGGAACTACTGAA+CGG | 0.693020 | 4.3:+74809166 | MS.gene50293:CDS |
| TAGCATGCAAAACAAAACGC+AGG | 0.702388 | 4.3:-74807163 | None:intergenic |
| CAGGTGACTACAAATACCTG+AGG | 0.728521 | 4.3:+74808177 | MS.gene50293:intron |
| GAGAAGGCACAAGTTCATGG+AGG | 0.729226 | 4.3:+74809776 | MS.gene50293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATAAAGTAATATA+AGG | + | chr4.3:74808579-74808598 | MS.gene50293:intron | 10.0% |
| !! | AAATAATAGTATAAAAACAG+AGG | - | chr4.3:74807265-74807284 | None:intergenic | 15.0% |
| !! | TAATTTCCAATAAATAAACA+AGG | - | chr4.3:74809090-74809109 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAGTACTAATTT+AGG | + | chr4.3:74808701-74808720 | MS.gene50293:intron | 15.0% |
| !! | ATGAATAATGAAAATATCTC+AGG | - | chr4.3:74807117-74807136 | None:intergenic | 20.0% |
| !! | ATTATACAAAAGATATGAGA+AGG | - | chr4.3:74808979-74808998 | None:intergenic | 20.0% |
| !! | ATTTATTAGCAAACTACAAT+TGG | - | chr4.3:74808139-74808158 | None:intergenic | 20.0% |
| !! | TATGAAGGTTAAAAAGATAA+CGG | - | chr4.3:74807983-74808002 | None:intergenic | 20.0% |
| !! | TGAACAAAATGAAAAACAAA+AGG | - | chr4.3:74808337-74808356 | None:intergenic | 20.0% |
| !! | TGATAATATAATCTGTTTCA+TGG | + | chr4.3:74808793-74808812 | MS.gene50293:intron | 20.0% |
| !! | TTATACAAAAGATATGAGAA+GGG | - | chr4.3:74808978-74808997 | None:intergenic | 20.0% |
| !!! | ACTTATCCTTGTTTATTTAT+TGG | + | chr4.3:74809081-74809100 | MS.gene50293:intron | 20.0% |
| !!! | ATTTATACTTTCTTTTCTAC+AGG | + | chr4.3:74807635-74807654 | MS.gene50293:intron | 20.0% |
| !!! | CAAAATAATCACTTTTGTTT+AGG | + | chr4.3:74807290-74807309 | MS.gene50293:intron | 20.0% |
| !!! | TTATCTTTTTAACCTTCATA+TGG | + | chr4.3:74807983-74808002 | MS.gene50293:intron | 20.0% |
| !!! | TTTTGGGTTAAAATTTGATA+GGG | - | chr4.3:74809605-74809624 | None:intergenic | 20.0% |
| !!! | TTTTTGGGTTAAAATTTGAT+AGG | - | chr4.3:74809606-74809625 | None:intergenic | 20.0% |
| ! | AAAATGGAAAAATGAGAATG+AGG | - | chr4.3:74808012-74808031 | None:intergenic | 25.0% |
| ! | AATAATGAAAATATCTCAGG+AGG | - | chr4.3:74807114-74807133 | None:intergenic | 25.0% |
| ! | AATCCTAATACATTGAATCA+GGG | - | chr4.3:74807528-74807547 | None:intergenic | 25.0% |
| ! | ACATGAAAAAGTAAGAACTT+AGG | - | chr4.3:74808539-74808558 | None:intergenic | 25.0% |
| ! | GGTCAATAAAATTATAGTAG+AGG | - | chr4.3:74809584-74809603 | None:intergenic | 25.0% |
| ! | GTAATATAGAAATAGGAAGA+AGG | - | chr4.3:74807961-74807980 | None:intergenic | 25.0% |
| ! | TAAAGATATGATGAAAACCA+AGG | + | chr4.3:74809554-74809573 | MS.gene50293:CDS | 25.0% |
| ! | TAATCCTAATACATTGAATC+AGG | - | chr4.3:74807529-74807548 | None:intergenic | 25.0% |
| ! | TATCCTATTGCTAGAAAATT+GGG | + | chr4.3:74809265-74809284 | MS.gene50293:intron | 25.0% |
| ! | TGATTCAATGTATTAGGATT+AGG | + | chr4.3:74807528-74807547 | MS.gene50293:intron | 25.0% |
| ! | TTGAAGATCATCAAAGAAAT+GGG | + | chr4.3:74808477-74808496 | MS.gene50293:CDS | 25.0% |
| ! | TTTGAAGATCATCAAAGAAA+TGG | + | chr4.3:74808476-74808495 | MS.gene50293:CDS | 25.0% |
| !! | AACTGTTGAAAATTTTCTTG+AGG | + | chr4.3:74808419-74808438 | MS.gene50293:CDS | 25.0% |
| !! | ATTTTGTTAGAATGTATGTG+AGG | + | chr4.3:74807338-74807357 | MS.gene50293:intron | 25.0% |
| !! | CTTTTATTAGAGAACAGAAA+AGG | - | chr4.3:74808637-74808656 | None:intergenic | 25.0% |
| !! | GATAACGGTAATATAGAAAT+AGG | - | chr4.3:74807968-74807987 | None:intergenic | 25.0% |
| !!! | CATTCTCATTTTTCCATTTT+AGG | + | chr4.3:74808012-74808031 | MS.gene50293:intron | 25.0% |
| !!! | TACTAAAGTTGCTTTTTTGT+TGG | + | chr4.3:74807659-74807678 | MS.gene50293:CDS | 25.0% |
| !!! | TTAATTTTGATGCATGATCT+CGG | + | chr4.3:74808766-74808785 | MS.gene50293:intron | 25.0% |
| AAGAATGCAGCAGATAAATT+TGG | - | chr4.3:74809665-74809684 | None:intergenic | 30.0% | |
| AGGATAAGTTGCAAACAAAA+TGG | - | chr4.3:74809070-74809089 | None:intergenic | 30.0% | |
| AGTATAAATCAAAAGCCTTG+AGG | - | chr4.3:74807624-74807643 | None:intergenic | 30.0% | |
| AGTATTAGCTCATATGAGAA+GGG | - | chr4.3:74808370-74808389 | None:intergenic | 30.0% | |
| ATAAAAAACCACACACTACA+CGG | - | chr4.3:74808101-74808120 | None:intergenic | 30.0% | |
| GGAAAAATACATGAACAAAG+AGG | + | chr4.3:74809488-74809507 | MS.gene50293:CDS | 30.0% | |
| GTATAATTCCTTCCAAAAGT+TGG | + | chr4.3:74808992-74809011 | MS.gene50293:intron | 30.0% | |
| GTATCCTATTGCTAGAAAAT+TGG | + | chr4.3:74809264-74809283 | MS.gene50293:intron | 30.0% | |
| GTCATAATTCTGCATTCAAA+GGG | - | chr4.3:74809298-74809317 | None:intergenic | 30.0% | |
| TAATGATACAAACATCCTCA+AGG | + | chr4.3:74807606-74807625 | MS.gene50293:intron | 30.0% | |
| TAGGATAGTTACAATTTCCA+TGG | - | chr4.3:74807938-74807957 | None:intergenic | 30.0% | |
| TATAGAAATAGGAAGAAGGT+AGG | - | chr4.3:74807957-74807976 | None:intergenic | 30.0% | |
| TCATCATATCTTTAAGCTTG+AGG | - | chr4.3:74809548-74809567 | None:intergenic | 30.0% | |
| TGATTTAAGCTATCCATTTC+AGG | + | chr4.3:74809734-74809753 | MS.gene50293:intron | 30.0% | |
| TGTCATAATTCTGCATTCAA+AGG | - | chr4.3:74809299-74809318 | None:intergenic | 30.0% | |
| ! | AAAAGTGTGTACTGTGTAAA+AGG | + | chr4.3:74807372-74807391 | MS.gene50293:intron | 30.0% |
| ! | AGAATGTATGTGAGGTTTTA+GGG | + | chr4.3:74807346-74807365 | MS.gene50293:intron | 30.0% |
| ! | CTTTGTTTGCCTTCAATATT+AGG | + | chr4.3:74809381-74809400 | MS.gene50293:intron | 30.0% |
| ! | GAAAATTTTCTTGAGGAAGA+GGG | + | chr4.3:74808426-74808445 | MS.gene50293:CDS | 30.0% |
| ! | TAGAATGTATGTGAGGTTTT+AGG | + | chr4.3:74807345-74807364 | MS.gene50293:intron | 30.0% |
| ! | TATTTATACTTGCTAACCTC+AGG | - | chr4.3:74808196-74808215 | None:intergenic | 30.0% |
| ! | TGAAAATTTTCTTGAGGAAG+AGG | + | chr4.3:74808425-74808444 | MS.gene50293:CDS | 30.0% |
| !! | AGCTAATACTGTGTCATTTA+GGG | + | chr4.3:74808380-74808399 | MS.gene50293:intron | 30.0% |
| !! | ATTCCCAATTTTCTAGCAAT+AGG | - | chr4.3:74809271-74809290 | None:intergenic | 30.0% |
| !! | CCTCTTTAAAACCTGAATAT+TGG | - | chr4.3:74809140-74809159 | None:intergenic | 30.0% |
| !! | TTTACTTTGTTGATAACTGC+AGG | + | chr4.3:74808158-74808177 | MS.gene50293:intron | 30.0% |
| !!! | ATATTCAGGTTTTAAAGAGG+AGG | + | chr4.3:74809140-74809159 | MS.gene50293:intron | 30.0% |
| !!! | CCAATATTCAGGTTTTAAAG+AGG | + | chr4.3:74809137-74809156 | MS.gene50293:intron | 30.0% |
| !!! | TCAACAGTTTTTTCTTCAGA+TGG | - | chr4.3:74808408-74808427 | None:intergenic | 30.0% |
| !!! | TTCACGCTTAGTCTTTTTTT+GGG | - | chr4.3:74809621-74809640 | None:intergenic | 30.0% |
| !!! | TTTCACGCTTAGTCTTTTTT+TGG | - | chr4.3:74809622-74809641 | None:intergenic | 30.0% |
| AAAGACGGACACAATAAGAA+AGG | + | chr4.3:74807786-74807805 | MS.gene50293:CDS | 35.0% | |
| ACAAAAGATATGAGAAGGGT+AGG | - | chr4.3:74808974-74808993 | None:intergenic | 35.0% | |
| AGGTAAGCAGCTATAATTGT+AGG | + | chr4.3:74808063-74808082 | MS.gene50293:intron | 35.0% | |
| ATAGCTGCTTACCTATATCA+TGG | - | chr4.3:74808057-74808076 | None:intergenic | 35.0% | |
| CAGTATTAGCTCATATGAGA+AGG | - | chr4.3:74808371-74808390 | None:intergenic | 35.0% | |
| CATCAAAGAAATGGGTAAGT+TGG | + | chr4.3:74808485-74808504 | MS.gene50293:intron | 35.0% | |
| CGTGCAATTCCTAATATTGA+AGG | - | chr4.3:74809393-74809412 | None:intergenic | 35.0% | |
| GTATTAGCTCATATGAGAAG+GGG | - | chr4.3:74808369-74808388 | None:intergenic | 35.0% | |
| GTTACAATTTCCATGGAATG+CGG | - | chr4.3:74807931-74807950 | None:intergenic | 35.0% | |
| TAAGAACTTAGGCAAGAAAC+TGG | - | chr4.3:74808528-74808547 | None:intergenic | 35.0% | |
| TAAGTTGCAAACAAAATGGC+AGG | - | chr4.3:74809066-74809085 | None:intergenic | 35.0% | |
| TCCTTAGATAGATCAGATCT+TGG | - | chr4.3:74809471-74809490 | None:intergenic | 35.0% | |
| TGATGCTTCTTCCAATATTC+AGG | + | chr4.3:74809126-74809145 | MS.gene50293:intron | 35.0% | |
| TTACAATTTCCATGGAATGC+GGG | - | chr4.3:74807930-74807949 | None:intergenic | 35.0% | |
| TTTAAGGGTCTTGAAAACCT+TGG | + | chr4.3:74807428-74807447 | MS.gene50293:intron | 35.0% | |
| TTTGACATGACTTTCAAAGC+AGG | + | chr4.3:74808731-74808750 | MS.gene50293:intron | 35.0% | |
| ! | ATTATAGTAGAGGTGTACCT+TGG | - | chr4.3:74809574-74809593 | None:intergenic | 35.0% |
| ! | CATTAGTTTCTCTCAGTCAA+AGG | + | chr4.3:74807138-74807157 | MS.gene50293:intron | 35.0% |
| !! | CACGTTTTCATTTGAAGTGT+TGG | - | chr4.3:74809343-74809362 | None:intergenic | 35.0% |
| !! | GAGCTAATACTGTGTCATTT+AGG | + | chr4.3:74808379-74808398 | MS.gene50293:intron | 35.0% |
| !!! | GAGGTTTTATTGAAGAAGAG+TGG | - | chr4.3:74807095-74807114 | None:intergenic | 35.0% |
| AAACAACCAAGCCTTGAAGT+TGG | - | chr4.3:74808301-74808320 | None:intergenic | 40.0% | |
| AAGAGAGACGATGGAAAAGA+CGG | + | chr4.3:74807771-74807790 | MS.gene50293:CDS | 40.0% | |
| AAGATATGAGAAGGGTAGGA+AGG | - | chr4.3:74808970-74808989 | None:intergenic | 40.0% | |
| AGAATTATGACAGCTCTTCG+AGG | + | chr4.3:74809307-74809326 | MS.gene50293:intron | 40.0% | |
| AGTACTATCCCTGATGATCA+TGG | + | chr4.3:74808942-74808961 | MS.gene50293:intron | 40.0% | |
| ATTGCACGTTGCTTCACATT+CGG | + | chr4.3:74809405-74809424 | MS.gene50293:CDS | 40.0% | |
| CAGCCCTGATTCAATGTATT+AGG | + | chr4.3:74807522-74807541 | MS.gene50293:intron | 40.0% | |
| GATCATATATTTCGCGAGCA+AGG | + | chr4.3:74807725-74807744 | MS.gene50293:CDS | 40.0% | |
| GCCAAGATCTGATCTATCTA+AGG | + | chr4.3:74809467-74809486 | MS.gene50293:CDS | 40.0% | |
| GCTAACACATGGACATCAAA+TGG | - | chr4.3:74807559-74807578 | None:intergenic | 40.0% | |
| TAAGCTATCCATTTCAGGCT+GGG | + | chr4.3:74809739-74809758 | MS.gene50293:intron | 40.0% | |
| TAGCATGCAAAACAAAACGC+AGG | - | chr4.3:74807166-74807185 | None:intergenic | 40.0% | |
| TCAAAGAGTTCTACGACGAA+TGG | + | chr4.3:74809805-74809824 | MS.gene50293:CDS | 40.0% | |
| TCAGATCTTGGCAAAATAGC+AGG | - | chr4.3:74809459-74809478 | None:intergenic | 40.0% | |
| TCTTGGACAACACCAAATTC+TGG | - | chr4.3:74809195-74809214 | None:intergenic | 40.0% | |
| TGAGGAGCTTCTCATGAAAA+TGG | - | chr4.3:74809530-74809549 | None:intergenic | 40.0% | |
| TGGTTGAGAAAGCGATGAAA+GGG | + | chr4.3:74807818-74807837 | MS.gene50293:CDS | 40.0% | |
| TTAAGCTATCCATTTCAGGC+TGG | + | chr4.3:74809738-74809757 | MS.gene50293:intron | 40.0% | |
| TTCTATGCTTTCTGTCTGTG+AGG | + | chr4.3:74807203-74807222 | MS.gene50293:CDS | 40.0% | |
| TTGGTTGAGAAAGCGATGAA+AGG | + | chr4.3:74807817-74807836 | MS.gene50293:CDS | 40.0% | |
| ! | ACAGACAGAAAGCATAGAAG+TGG | - | chr4.3:74807202-74807221 | None:intergenic | 40.0% |
| ! | AGTGTTGTTAGCCAACTTCA+AGG | + | chr4.3:74808287-74808306 | MS.gene50293:intron | 40.0% |
| !! | AGGCTATGAGTTAGCCTTTA+TGG | + | chr4.3:74807392-74807411 | MS.gene50293:intron | 40.0% |
| !! | CTATGAGTTAGCCTTTATGG+TGG | + | chr4.3:74807395-74807414 | MS.gene50293:intron | 40.0% |
| !! | CTTGATGCTATTGGTGCTAT+AGG | + | chr4.3:74809225-74809244 | MS.gene50293:CDS | 40.0% |
| !!! | AGGTTTTAAAGAGGAGGTGA+CGG | + | chr4.3:74809146-74809165 | MS.gene50293:intron | 40.0% |
| AATAAGAAAGGCTGAGGCGT+TGG | + | chr4.3:74807798-74807817 | MS.gene50293:CDS | 45.0% | |
| ACCCTGATTGACCACCATAA+AGG | - | chr4.3:74807409-74807428 | None:intergenic | 45.0% | |
| ACTGAACGGAGTCCAGAATT+TGG | + | chr4.3:74809180-74809199 | MS.gene50293:CDS | 45.0% | |
| AGAATGAGGCGACCATATGA+AGG | - | chr4.3:74807998-74808017 | None:intergenic | 45.0% | |
| AGCCTTTATGGTGGTCAATC+AGG | + | chr4.3:74807404-74807423 | MS.gene50293:intron | 45.0% | |
| AGGAAGGAACCATGATCATC+AGG | - | chr4.3:74808954-74808973 | None:intergenic | 45.0% | |
| ATTCTTGTCCGTGTAGTGTG+TGG | + | chr4.3:74808090-74808109 | MS.gene50293:intron | 45.0% | |
| CAGGTGACTACAAATACCTG+AGG | + | chr4.3:74808177-74808196 | MS.gene50293:intron | 45.0% | |
| CATCAAGCCTATCAGCATCT+TGG | - | chr4.3:74809212-74809231 | None:intergenic | 45.0% | |
| CGGGAAAAGGAACTACTGAA+CGG | + | chr4.3:74809166-74809185 | MS.gene50293:CDS | 45.0% | |
| CGTTGTAACAAGAGAGACGA+TGG | + | chr4.3:74807762-74807781 | MS.gene50293:CDS | 45.0% | |
| CTAAGCCAGTAGCTAACACA+TGG | - | chr4.3:74807570-74807589 | None:intergenic | 45.0% | |
| GAATGACGCTTCTCATGATG+CGG | + | chr4.3:74807840-74807859 | MS.gene50293:CDS | 45.0% | |
| GAGTTCTACGACGAATGGAA+CGG | + | chr4.3:74809810-74809829 | MS.gene50293:CDS | 45.0% | |
| GATGTCCATGTGTTAGCTAC+TGG | + | chr4.3:74807562-74807581 | MS.gene50293:intron | 45.0% | |
| GCAGCAAGCTCTACCTAAAA+TGG | - | chr4.3:74808028-74808047 | None:intergenic | 45.0% | |
| GCCTTTATGGTGGTCAATCA+GGG | + | chr4.3:74807405-74807424 | MS.gene50293:intron | 45.0% | |
| GCTGATAGGCTTGATGCTAT+TGG | + | chr4.3:74809216-74809235 | MS.gene50293:CDS | 45.0% | |
| GGAAGGAACCATGATCATCA+GGG | - | chr4.3:74808953-74808972 | None:intergenic | 45.0% | |
| GGACACAATAAGAAAGGCTG+AGG | + | chr4.3:74807792-74807811 | MS.gene50293:CDS | 45.0% | |
| GGTGGTCAATCAGGGTTTAA+GGG | + | chr4.3:74807413-74807432 | MS.gene50293:intron | 45.0% | |
| GTGTTGTCCAAGATGCTGAT+AGG | + | chr4.3:74809202-74809221 | MS.gene50293:CDS | 45.0% | |
| TGGTGGTCAATCAGGGTTTA+AGG | + | chr4.3:74807412-74807431 | MS.gene50293:intron | 45.0% | |
| TGTTAGCCAACTTCAAGGCT+TGG | + | chr4.3:74808292-74808311 | MS.gene50293:intron | 45.0% | |
| ! | TTCAAAGACGCGCCAACTTT+TGG | - | chr4.3:74809007-74809026 | None:intergenic | 45.0% |
| !! | CATGTGTTAGCTACTGGCTT+AGG | + | chr4.3:74807568-74807587 | MS.gene50293:intron | 45.0% |
| !!! | GCTTTTTTGTTGGCTCGAGT+GGG | + | chr4.3:74807669-74807688 | MS.gene50293:CDS | 45.0% |
| !!! | GGTTTTAAAGAGGAGGTGAC+GGG | + | chr4.3:74809147-74809166 | MS.gene50293:intron | 45.0% |
| !!! | TGCTTTTTTGTTGGCTCGAG+TGG | + | chr4.3:74807668-74807687 | MS.gene50293:CDS | 45.0% |
| !!! | TTTTTTTATATTTTATTTCA+TGG | + | chr4.3:74807047-74807066 | MS.gene50293:intron | 5.0% |
| AGATCAGGGTTGTGCCATCT+AGG | + | chr4.3:74807468-74807487 | MS.gene50293:intron | 50.0% | |
| ATCCATTTCAGGCTGGGCAA+AGG | + | chr4.3:74809745-74809764 | MS.gene50293:intron | 50.0% | |
| ATGATGCGGCACATGTTTGG+AGG | + | chr4.3:74807854-74807873 | MS.gene50293:CDS | 50.0% | |
| ATTCGGCGGGAGTAAGAAGA+GGG | + | chr4.3:74809422-74809441 | MS.gene50293:CDS | 50.0% | |
| ATTTCAGGCTGGGCAAAGGA+GGG | + | chr4.3:74809749-74809768 | MS.gene50293:intron | 50.0% | |
| CGTCCATTCCGAATCCTAGA+TGG | - | chr4.3:74807485-74807504 | None:intergenic | 50.0% | |
| CTCATGATGCGGCACATGTT+TGG | + | chr4.3:74807851-74807870 | MS.gene50293:CDS | 50.0% | |
| GCTGCACTGCTCCATGATAT+AGG | + | chr4.3:74808043-74808062 | MS.gene50293:CDS | 50.0% | |
| GGACACTTGTGAGCAGATCA+GGG | + | chr4.3:74807454-74807473 | MS.gene50293:intron | 50.0% | |
| GGGTCTTGAAAACCTTGGTC+TGG | + | chr4.3:74807433-74807452 | MS.gene50293:intron | 50.0% | |
| TCTTGAGGAAGAGGGAGTTG+AGG | + | chr4.3:74808434-74808453 | MS.gene50293:CDS | 50.0% | |
| TGATGCGGCACATGTTTGGA+GGG | + | chr4.3:74807855-74807874 | MS.gene50293:CDS | 50.0% | |
| TGGACACTTGTGAGCAGATC+AGG | + | chr4.3:74807453-74807472 | MS.gene50293:intron | 50.0% | |
| ! | AAGACGCGCCAACTTTTGGA+AGG | - | chr4.3:74809003-74809022 | None:intergenic | 50.0% |
| ! | GAGAAGGCACAAGTTCATGG+AGG | + | chr4.3:74809776-74809795 | MS.gene50293:CDS | 50.0% |
| ! | GGAGAGAAGGCACAAGTTCA+TGG | + | chr4.3:74809773-74809792 | MS.gene50293:CDS | 50.0% |
| ! | GGGTTGTGCCATCTAGGATT+CGG | + | chr4.3:74807474-74807493 | MS.gene50293:intron | 50.0% |
| ! | GTGCCATCTAGGATTCGGAA+TGG | + | chr4.3:74807479-74807498 | MS.gene50293:intron | 50.0% |
| !! | AAAGAGGAGGTGACGGGAAA+AGG | + | chr4.3:74809153-74809172 | MS.gene50293:CDS | 50.0% |
| !! | TTTGTTGGCTCGAGTGGGAA+AGG | + | chr4.3:74807674-74807693 | MS.gene50293:CDS | 50.0% |
| CACGTTGCTTCACATTCGGC+GGG | + | chr4.3:74809409-74809428 | MS.gene50293:CDS | 55.0% | |
| CATTCGGCGGGAGTAAGAAG+AGG | + | chr4.3:74809421-74809440 | MS.gene50293:CDS | 55.0% | |
| CATTTCAGGCTGGGCAAAGG+AGG | + | chr4.3:74809748-74809767 | MS.gene50293:intron | 55.0% | |
| CTCCTTTGCCCAGCCTGAAA+TGG | - | chr4.3:74809750-74809769 | None:intergenic | 55.0% | |
| CTCTTCTGACCCGCATTCCA+TGG | + | chr4.3:74807918-74807937 | MS.gene50293:CDS | 55.0% | |
| GCACGTTGCTTCACATTCGG+CGG | + | chr4.3:74809408-74809427 | MS.gene50293:CDS | 55.0% | |
| GCTCACAAGTGTCCAGACCA+AGG | - | chr4.3:74807448-74807467 | None:intergenic | 55.0% | |
| GTCAGAAGAGAGGCCTTCCT+CGG | - | chr4.3:74807908-74807927 | None:intergenic | 55.0% | |
| TGGAATGCGGGTCAGAAGAG+AGG | - | chr4.3:74807918-74807937 | None:intergenic | 55.0% | |
| ! | TGGGAAAGGTGTGCTGTTGC+AGG | + | chr4.3:74807688-74807707 | MS.gene50293:CDS | 55.0% |
| AGAAGAGAGGCCTTCCTCGG+TGG | - | chr4.3:74807905-74807924 | None:intergenic | 60.0% | |
| ! | CGAGCAAGGTGTGCTGTTGC+AGG | + | chr4.3:74807739-74807758 | MS.gene50293:CDS | 60.0% |
| AGAGGCCTTCCTCGGTGGCA+AGG | - | chr4.3:74807900-74807919 | None:intergenic | 65.0% | |
| CGGTGGCAAGGGAGAGAGCA+AGG | - | chr4.3:74807888-74807907 | None:intergenic | 65.0% | |
| CTCTCCCTTGCCACCGAGGA+AGG | + | chr4.3:74807892-74807911 | MS.gene50293:CDS | 65.0% | |
| GAGGCCTTCCTCGGTGGCAA+GGG | - | chr4.3:74807899-74807918 | None:intergenic | 65.0% | |
| GGCAAAGGAGGGCGGAGAGA+AGG | + | chr4.3:74809760-74809779 | MS.gene50293:CDS | 65.0% | |
| TCAGGCTGGGCAAAGGAGGG+CGG | + | chr4.3:74809752-74809771 | MS.gene50293:intron | 65.0% | |
| TGCTCTCTCCCTTGCCACCG+AGG | + | chr4.3:74807888-74807907 | MS.gene50293:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 74806991 | 74809842 | 74806991 | ID=MS.gene50293 |
| chr4.3 | mRNA | 74806991 | 74809842 | 74806991 | ID=MS.gene50293.t1;Parent=MS.gene50293 |
| chr4.3 | exon | 74806991 | 74806993 | 74806991 | ID=MS.gene50293.t1.exon1;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74806991 | 74806993 | 74806991 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74807154 | 74807224 | 74807154 | ID=MS.gene50293.t1.exon2;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74807154 | 74807224 | 74807154 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74807657 | 74807945 | 74807657 | ID=MS.gene50293.t1.exon3;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74807657 | 74807945 | 74807657 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74808034 | 74808064 | 74808034 | ID=MS.gene50293.t1.exon4;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74808034 | 74808064 | 74808034 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74808180 | 74808198 | 74808180 | ID=MS.gene50293.t1.exon5;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74808180 | 74808198 | 74808180 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74808401 | 74808498 | 74808401 | ID=MS.gene50293.t1.exon6;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74808401 | 74808498 | 74808401 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74809148 | 74809246 | 74809148 | ID=MS.gene50293.t1.exon7;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74809148 | 74809246 | 74809148 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74809403 | 74809575 | 74809403 | ID=MS.gene50293.t1.exon8;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74809403 | 74809575 | 74809403 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| chr4.3 | exon | 74809756 | 74809842 | 74809756 | ID=MS.gene50293.t1.exon9;Parent=MS.gene50293.t1 |
| chr4.3 | CDS | 74809756 | 74809842 | 74809756 | ID=cds.MS.gene50293.t1;Parent=MS.gene50293.t1 |
| Gene Sequence |
| Protein sequence |
