AlfalfaGEDB | MS.gene50467

M. sativa cultivar XinJiangDaYe / MS.gene50467

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50467.t1	XP_013449711.1	88.7	71	4	1	1	67	1	71	1.00E-21	112.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50467.t1	Q9SVC4	65.5	55	16	1	1	52	1	55	1.5e-10	66.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50467.t1	I3SV27	88.7	71	4	1	1	67	1	71	7.4e-22	112.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050165	MS.gene50467	0.807277	5.47E-50	-1.69E-46
MS.gene050333	MS.gene50467	0.804443	2.16E-49	-1.69E-46
MS.gene050612	MS.gene50467	0.811248	7.70E-51	-1.69E-46
MS.gene051810	MS.gene50467	0.819296	1.25E-52	-1.69E-46
MS.gene051949	MS.gene50467	0.841229	5.39E-58	-1.69E-46
MS.gene055634	MS.gene50467	0.812	5.28E-51	-1.69E-46
MS.gene055638	MS.gene50467	0.804515	2.08E-49	-1.69E-46
MS.gene055776	MS.gene50467	0.814834	1.26E-51	-1.69E-46
MS.gene055942	MS.gene50467	-0.814804	1.28E-51	-1.69E-46
MS.gene056405	MS.gene50467	0.851113	1.10E-60	-1.69E-46
MS.gene056607	MS.gene50467	0.851872	6.69E-61	-1.69E-46
MS.gene056910	MS.gene50467	0.8009	1.16E-48	-1.69E-46
MS.gene059022	MS.gene50467	0.804869	1.76E-49	-1.69E-46
MS.gene059865	MS.gene50467	0.803046	4.20E-49	-1.69E-46
MS.gene060703	MS.gene50467	0.84552	3.86E-59	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50467.t1	MTR_7g094710	100.000	47	0	0	1	47	1	47	3.65e-28	96.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50467.t1	AT3G52420	65.455	55	16	1	1	52	1	55	1.35e-17	69.3

Find 23 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCGGTTGTGGTTGC+TGG	0.323695	7.3:-16360155	MS.gene50467:CDS
CTGGAGCCTTAGCATTTGTC+TGG	0.357220	7.3:-16360136	MS.gene50467:CDS
GCATCTCCGGTATCAGCTTC+AGG	0.383647	7.3:+16360008	None:intergenic
GCTTCAGGAGCGGCGGCAGC+AGG	0.386627	7.3:+16360023	None:intergenic
TGCAGTTGCGGTGGCATCTC+CGG	0.432441	7.3:+16359995	None:intergenic
GCGGCAGCAGGAACATCATC+AGG	0.447838	7.3:+16360035	None:intergenic
TAGAGTCGCGGGTCTGAGAA+AGG	0.465845	7.3:+16360084	None:intergenic
GCCGCTCCTGAAGCTGATAC+CGG	0.517196	7.3:-16360014	MS.gene50467:CDS
CATCATCAGGATCACGGGTC+GGG	0.517406	7.3:+16360048	None:intergenic
AAATTAGGCGTCTGCAGTTG+CGG	0.528752	7.3:+16359983	None:intergenic
GTCGCGGGTCTGAGAAAGGA+AGG	0.546452	7.3:+16360088	None:intergenic
AGGAACATCATCAGGATCAC+GGG	0.573103	7.3:+16360043	None:intergenic
AAAGGCAAAAGAAGCGGTTG+TGG	0.575609	7.3:-16360162	MS.gene50467:CDS
CAGGAACATCATCAGGATCA+CGG	0.582934	7.3:+16360042	None:intergenic
AGCGAGCCAGACAAATGCTA+AGG	0.593697	7.3:+16360130	None:intergenic
AGATTTGTCGATAGAGTCGC+GGG	0.604367	7.3:+16360073	None:intergenic
ACATCATCAGGATCACGGGT+CGG	0.609823	7.3:+16360047	None:intergenic
CAGATTTGTCGATAGAGTCG+CGG	0.623137	7.3:+16360072	None:intergenic
TTAGGCGTCTGCAGTTGCGG+TGG	0.639439	7.3:+16359986	None:intergenic
TCCGGTATCAGCTTCAGGAG+CGG	0.639504	7.3:+16360013	None:intergenic
GGTATCAGCTTCAGGAGCGG+CGG	0.662347	7.3:+16360016	None:intergenic
GATGGGAAAGGCAAAAGAAG+CGG	0.676214	7.3:-16360168	MS.gene50467:CDS
TCGCGGGTCTGAGAAAGGAA+GGG	0.692341	7.3:+16360089	None:intergenic

CRISPR-GE

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGCAAAAGAAGCGGTTG+TGG	-	chr7.3:16359991-16360010	MS.gene50467:CDS	45.0%
AGATTTGTCGATAGAGTCGC+GGG	+	chr7.3:16360083-16360102	None:intergenic	45.0%
AGGAACATCATCAGGATCAC+GGG	+	chr7.3:16360113-16360132	None:intergenic	45.0%
CAGATTTGTCGATAGAGTCG+CGG	+	chr7.3:16360084-16360103	None:intergenic	45.0%
CAGGAACATCATCAGGATCA+CGG	+	chr7.3:16360114-16360133	None:intergenic	45.0%
AAAGAAGCGGTTGTGGTTGC+TGG	-	chr7.3:16359998-16360017	MS.gene50467:CDS	50.0%
ACATCATCAGGATCACGGGT+CGG	+	chr7.3:16360109-16360128	None:intergenic	50.0%
AGCGAGCCAGACAAATGCTA+AGG	+	chr7.3:16360026-16360045	None:intergenic	50.0%
CTGGAGCCTTAGCATTTGTC+TGG	-	chr7.3:16360017-16360036	MS.gene50467:CDS	50.0%
CATCATCAGGATCACGGGTC+GGG	+	chr7.3:16360108-16360127	None:intergenic	55.0%
GCATCTCCGGTATCAGCTTC+AGG	+	chr7.3:16360148-16360167	None:intergenic	55.0%
TAGAGTCGCGGGTCTGAGAA+AGG	+	chr7.3:16360072-16360091	None:intergenic	55.0%
TCCGGTATCAGCTTCAGGAG+CGG	+	chr7.3:16360143-16360162	None:intergenic	55.0%
TCGCGGGTCTGAGAAAGGAA+GGG	+	chr7.3:16360067-16360086	None:intergenic	55.0%
GCCGCTCCTGAAGCTGATAC+CGG	-	chr7.3:16360139-16360158	MS.gene50467:CDS	60.0%
GCGGCAGCAGGAACATCATC+AGG	+	chr7.3:16360121-16360140	None:intergenic	60.0%
GGTATCAGCTTCAGGAGCGG+CGG	+	chr7.3:16360140-16360159	None:intergenic	60.0%
GTCGCGGGTCTGAGAAAGGA+AGG	+	chr7.3:16360068-16360087	None:intergenic	60.0%
TGCAGTTGCGGTGGCATCTC+CGG	+	chr7.3:16360161-16360180	None:intergenic	60.0%
TTAGGCGTCTGCAGTTGCGG+TGG	+	chr7.3:16360170-16360189	None:intergenic	60.0%
GCTTCAGGAGCGGCGGCAGC+AGG	+	chr7.3:16360133-16360152	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	16359986	16360189	16359986	ID=MS.gene50467
chr7.3	mRNA	16359986	16360189	16359986	ID=MS.gene50467.t1;Parent=MS.gene50467
chr7.3	exon	16359986	16360189	16359986	ID=MS.gene50467.t1.exon1;Parent=MS.gene50467.t1
chr7.3	CDS	16359986	16360189	16359986	ID=cds.MS.gene50467.t1;Parent=MS.gene50467.t1

Gene Sequence	>MS.gene50467 ATGGGAAAGGCAAAAGAAGCGGTTGTGGTTGCTGGAGCCTTAGCATTTGTCTGGCTCGCTATTGAACTCGCTTTCAAACCCTTCCTTTCTCAGACCCGCGACTCTATCGACAAATCTGACCCGACCCGTGATCCTGATGATGTTCCTGCTGCCGCCGCTCCTGAAGCTGATACCGGAGATGCCACCGCAACTGCAGACGCCTAA
Protein sequence	>MS.gene50467.t1 MGKAKEAVVVAGALAFVWLAIELAFKPFLSQTRDSIDKSDPTRDPDDVPAAAAPEADTGDATATADA