Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50641.t1 | XP_013468486.1 | 100 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 4.90E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50641.t1 | B7FH08 | 100.0 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 3.5e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene50641 | 0.81216 | 4.87E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene50641 | 0.806713 | 7.20E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene50641 | -0.805947 | 1.04E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene50641 | 0.811307 | 7.48E-51 | -1.69E-46 |
| MS.gene051756 | MS.gene50641 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene50641 | 0.811178 | 7.97E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene50641 | 0.814374 | 1.59E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene50641 | 0.81981 | 9.55E-53 | -1.69E-46 |
| MS.gene056849 | MS.gene50641 | 0.815344 | 9.70E-52 | -1.69E-46 |
| MS.gene057094 | MS.gene50641 | 0.830977 | 2.17E-55 | -1.69E-46 |
| MS.gene057452 | MS.gene50641 | -0.81257 | 3.97E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene50641 | 0.842675 | 2.24E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene50641 | 0.806358 | 8.55E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene50641 | 0.823036 | 1.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50641.t1 | MTR_1g069900 | 100.000 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 5.82e-157 | 432 |
| MS.gene50641.t1 | MTR_1g069870 | 80.976 | 205 | 39 | 0 | 1 | 205 | 1 | 205 | 4.60e-122 | 344 |
| MS.gene50641.t1 | MTR_1g069890 | 83.898 | 118 | 18 | 1 | 88 | 205 | 15 | 131 | 1.39e-65 | 198 |
| MS.gene50641.t1 | MTR_1g069860 | 64.286 | 84 | 24 | 1 | 122 | 205 | 12 | 89 | 2.78e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50641.t1 | AT2G31140 | 57.073 | 205 | 88 | 0 | 1 | 205 | 1 | 205 | 7.09e-87 | 255 |
| MS.gene50641.t1 | AT1G06200 | 56.585 | 205 | 89 | 0 | 1 | 205 | 1 | 205 | 2.34e-86 | 254 |
| MS.gene50641.t1 | AT1G06200 | 56.585 | 205 | 89 | 0 | 1 | 205 | 38 | 242 | 1.04e-85 | 253 |
Find 44 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGATGGTGTATTGAGCTT+TGG | 0.370737 | 1.2:+53133554 | None:intergenic |
| CAGCATTTCGCAGGCAGTAT+AGG | 0.382636 | 1.2:+53130798 | None:intergenic |
| GCTCCTTTGGCATCAATAGT+AGG | 0.391625 | 1.2:+53133254 | None:intergenic |
| GCAATTGACAGTCGAACATT+TGG | 0.396826 | 1.2:-53130854 | MS.gene50641:CDS |
| TTTGATTGACAGAATCATAA+AGG | 0.398944 | 1.2:-53133377 | MS.gene50641:intron |
| TCCTTTAGTCCAATGCAAAA+AGG | 0.413433 | 1.2:+53133289 | None:intergenic |
| CAGTCCTTTCAGTATGCAAA+AGG | 0.439464 | 1.2:-53130670 | MS.gene50641:CDS |
| TGTGAAAGATAATGAGCTAA+TGG | 0.443389 | 1.2:-53133348 | MS.gene50641:CDS |
| ACGATGTTGGTCATGTGAAT+TGG | 0.448954 | 1.2:+53130830 | None:intergenic |
| GGATTCACCAGTGTTGGAAA+TGG | 0.450418 | 1.2:-53130649 | MS.gene50641:CDS |
| ACCATGGCCGTGTACAGAAC+AGG | 0.474301 | 1.2:-53130772 | MS.gene50641:intron |
| AACAAGAAGAGTAGCTCCTT+TGG | 0.474364 | 1.2:+53133241 | None:intergenic |
| TGCGACTGAAGGTTATGAAA+TGG | 0.475975 | 1.2:-53132031 | MS.gene50641:CDS |
| CTCCTTTGGCATCAATAGTA+GGG | 0.480449 | 1.2:+53133255 | None:intergenic |
| AATGGCTTCTACTGATGAAA+AGG | 0.484277 | 1.2:-53132013 | MS.gene50641:CDS |
| CACCATCGATCTCGGCTACA+AGG | 0.488299 | 1.2:-53133541 | MS.gene50641:intron |
| TGTATTGAGCTTTGGATTGA+AGG | 0.493410 | 1.2:+53133562 | None:intergenic |
| GCAAAAGGATTCACCAGTGT+TGG | 0.493784 | 1.2:-53130655 | MS.gene50641:CDS |
| TCTTGAGAAGGATCAGTGTT+GGG | 0.510455 | 1.2:-53131977 | MS.gene50641:CDS |
| CGAATCGTTTGTTCTTGAGA+AGG | 0.511595 | 1.2:-53131989 | MS.gene50641:CDS |
| ACCTGTTCTGTACACGGCCA+TGG | 0.512549 | 1.2:+53130771 | None:intergenic |
| TTTGACAGACGTGTTTATGT+AGG | 0.513138 | 1.2:-53132114 | MS.gene50641:intron |
| CTTCTGACTAGATAGTCGTC+TGG | 0.513958 | 1.2:+53132060 | None:intergenic |
| TTCTTGAGAAGGATCAGTGT+TGG | 0.523682 | 1.2:-53131978 | MS.gene50641:CDS |
| TTGATTACCTGTTCTGTACA+CGG | 0.535222 | 1.2:+53130765 | None:intergenic |
| GCTCAATACACCATCGATCT+CGG | 0.545489 | 1.2:-53133549 | MS.gene50641:CDS |
| GAAGGATCAGTGTTGGGTAG+TGG | 0.557582 | 1.2:-53131971 | MS.gene50641:CDS |
| GACCTTGTAGCCGAGATCGA+TGG | 0.558078 | 1.2:+53133539 | None:intergenic |
| TTGGACTAAAGGAGAGGAGA+TGG | 0.566801 | 1.2:-53133279 | MS.gene50641:CDS |
| CATGGTCTACAGCATTTCGC+AGG | 0.571516 | 1.2:+53130789 | None:intergenic |
| TAGGACTCTGCCTACGATGT+TGG | 0.572719 | 1.2:+53130817 | None:intergenic |
| TCAAGTTCCATTTCCAACAC+TGG | 0.579157 | 1.2:+53130642 | None:intergenic |
| AGAAGATTAGCTGCGACTGA+AGG | 0.584300 | 1.2:-53132042 | MS.gene50641:CDS |
| GGAACTTGATGTTGATGAGA+TGG | 0.587426 | 1.2:-53130628 | MS.gene50641:CDS |
| GCCCCTACTATTGATGCCAA+AGG | 0.592866 | 1.2:-53133257 | MS.gene50641:CDS |
| AAATGAGAAATTGAAAGCCA+AGG | 0.607182 | 1.2:-53131944 | MS.gene50641:intron |
| TGTTTATGTAGGAGATGTTG+TGG | 0.623948 | 1.2:-53132103 | MS.gene50641:CDS |
| TTTGCATTGGACTAAAGGAG+AGG | 0.625454 | 1.2:-53133285 | MS.gene50641:CDS |
| TCCTTTGGCATCAATAGTAG+GGG | 0.637535 | 1.2:+53133256 | None:intergenic |
| GTAGCGACACCACGTTGTGA+AGG | 0.640169 | 1.2:+53133584 | None:intergenic |
| ATTCACATGACCAACATCGT+AGG | 0.663772 | 1.2:-53130827 | MS.gene50641:CDS |
| GATTGACAGAATCATAAAGG+AGG | 0.664267 | 1.2:-53133374 | MS.gene50641:intron |
| CAATGGTTTCCTTCACAACG+TGG | 0.665055 | 1.2:-53133593 | MS.gene50641:CDS |
| CTGCGAAATGCTGTAGACCA+TGG | 0.666500 | 1.2:-53130788 | MS.gene50641:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTA+CGG | - | chr1.2:53131819-53131838 | MS.gene50641:intron | 0.0% |
| !! | TATAATCTTATATTGTATAT+TGG | - | chr1.2:53133238-53133257 | MS.gene50641:CDS | 10.0% |
| !! | TTAAATTTGGATTTAAATAT+TGG | - | chr1.2:53131506-53131525 | MS.gene50641:intron | 10.0% |
| !!! | TATTTTATTTGTTAAGAAAA+GGG | + | chr1.2:53132675-53132694 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTGTTAAGAAA+AGG | + | chr1.2:53132676-53132695 | None:intergenic | 10.0% |
| !! | ATTAGATATGATTTATGATA+GGG | - | chr1.2:53131532-53131551 | MS.gene50641:intron | 15.0% |
| !! | TACAATTAAAGCTAATATTT+AGG | + | chr1.2:53133019-53133038 | None:intergenic | 15.0% |
| !! | TTTCTATTAATACTTAGATA+TGG | + | chr1.2:53133200-53133219 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGTTAAGAAAAG+GGG | + | chr1.2:53132674-53132693 | None:intergenic | 15.0% |
| !!! | TCAATTTCAAAATTTGAAAT+TGG | - | chr1.2:53131927-53131946 | MS.gene50641:intron | 15.0% |
| !! | AAAAACTAAAAAGACAGAAA+AGG | + | chr1.2:53133152-53133171 | None:intergenic | 20.0% |
| !! | AAAGTTAGTTAAGAGATTAT+CGG | - | chr1.2:53131989-53132008 | MS.gene50641:CDS | 20.0% |
| !! | CATTAGATATGATTTATGAT+AGG | - | chr1.2:53131531-53131550 | MS.gene50641:intron | 20.0% |
| !! | CTATTGACAAATGTAAAAAT+TGG | + | chr1.2:53132592-53132611 | None:intergenic | 20.0% |
| !! | TTATGAAGTTATAAATTAGC+TGG | - | chr1.2:53131740-53131759 | MS.gene50641:intron | 20.0% |
| !!! | ATTACTTTTATGCTATCAAT+AGG | - | chr1.2:53132325-53132344 | MS.gene50641:intron | 20.0% |
| !!! | CTTTTTTCATTTCTCTTTTA+GGG | - | chr1.2:53130705-53130724 | MS.gene50641:intron | 20.0% |
| !!! | TAAAATTGTTTTGAAGCTAA+TGG | - | chr1.2:53131848-53131867 | MS.gene50641:intron | 20.0% |
| !!! | TATGATTAATTACTTTTGGT+CGG | + | chr1.2:53131000-53131019 | None:intergenic | 20.0% |
| !!! | TCAGGTTCAAATAATTTTAT+CGG | + | chr1.2:53133120-53133139 | None:intergenic | 20.0% |
| !!! | TCTTTGTTTACAAGAAATTA+AGG | + | chr1.2:53133279-53133298 | None:intergenic | 20.0% |
| !!! | TCTTTTTTCATTTCTCTTTT+AGG | - | chr1.2:53130704-53130723 | MS.gene50641:intron | 20.0% |
| !!! | TGAGTATGATTAATTACTTT+TGG | + | chr1.2:53131004-53131023 | None:intergenic | 20.0% |
| !!! | TTAACTAATGGTTTGATTTT+TGG | - | chr1.2:53132547-53132566 | MS.gene50641:intron | 20.0% |
| !!! | TTAATAGAAAAGTTTTCACA+AGG | - | chr1.2:53133210-53133229 | MS.gene50641:intron | 20.0% |
| !!! | TTTTATTTGTTAAGAAAAGG+GGG | + | chr1.2:53132673-53132692 | None:intergenic | 20.0% |
| ! | AGCATTTATTTATAAGTGAG+AGG | - | chr1.2:53131270-53131289 | MS.gene50641:intron | 25.0% |
| ! | CATTGATATGCATGTATTTA+AGG | - | chr1.2:53132460-53132479 | MS.gene50641:intron | 25.0% |
| ! | GTCAAACAATTGCTTAAATT+TGG | - | chr1.2:53131493-53131512 | MS.gene50641:intron | 25.0% |
| ! | TAGGAATAACAAGAACAAAA+TGG | + | chr1.2:53131960-53131979 | None:intergenic | 25.0% |
| ! | TCAATAGATGTTGACATTAT+TGG | - | chr1.2:53132605-53132624 | MS.gene50641:intron | 25.0% |
| ! | TGTCTATCACTAACAAATAA+TGG | + | chr1.2:53132059-53132078 | None:intergenic | 25.0% |
| ! | TTTGATTGACAGAATCATAA+AGG | - | chr1.2:53130822-53130841 | MS.gene50641:CDS | 25.0% |
| !! | AATCTCTTAACTAACTTTTG+TGG | + | chr1.2:53131987-53132006 | None:intergenic | 25.0% |
| !! | GAATTAAGAATTTTCACTTG+AGG | + | chr1.2:53132795-53132814 | None:intergenic | 25.0% |
| !! | TAGAGTAAAAGTTTGCATTT+TGG | - | chr1.2:53131136-53131155 | MS.gene50641:intron | 25.0% |
| !! | TATTTAGGAAGAAACTGTTT+TGG | + | chr1.2:53133004-53133023 | None:intergenic | 25.0% |
| !! | TTATCAGGAAAAAGCTATTT+TGG | + | chr1.2:53132909-53132928 | None:intergenic | 25.0% |
| !!! | ATGATTAATTACTTTTGGTC+GGG | + | chr1.2:53130999-53131018 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGCATTTCACTAA+TGG | - | chr1.2:53130879-53130898 | MS.gene50641:intron | 25.0% |
| !!! | TATTGTTAAGCTGTTTTGAA+TGG | - | chr1.2:53130794-53130813 | MS.gene50641:CDS | 25.0% |
| AAATGAGAAATTGAAAGCCA+AGG | - | chr1.2:53132255-53132274 | MS.gene50641:intron | 30.0% | |
| ATTAGTACATTGTGCACAAA+TGG | - | chr1.2:53133466-53133485 | MS.gene50641:intron | 30.0% | |
| ATTGAAAGCCAAGGTATAAA+TGG | - | chr1.2:53132264-53132283 | MS.gene50641:intron | 30.0% | |
| CAGAAAAGGACAAAAAATTC+AGG | + | chr1.2:53133138-53133157 | None:intergenic | 30.0% | |
| CATTGCAGCTACTATTATTT+AGG | + | chr1.2:53132842-53132861 | None:intergenic | 30.0% | |
| CTAAATAATAGTAGCTGCAA+TGG | - | chr1.2:53132840-53132859 | MS.gene50641:intron | 30.0% | |
| GATATGATTTATGATAGGGT+AGG | - | chr1.2:53131536-53131555 | MS.gene50641:intron | 30.0% | |
| GTGATATTAACATGATACCT+AGG | - | chr1.2:53132523-53132542 | MS.gene50641:intron | 30.0% | |
| TATGACTTTGATAAGGTTCA+AGG | - | chr1.2:53132745-53132764 | MS.gene50641:intron | 30.0% | |
| TCAAACCATTAGTTAAACCT+AGG | + | chr1.2:53132543-53132562 | None:intergenic | 30.0% | |
| TCTAAAAGCCATTTATACCT+TGG | + | chr1.2:53132275-53132294 | None:intergenic | 30.0% | |
| TGATACCTAGGTTTAACTAA+TGG | - | chr1.2:53132535-53132554 | MS.gene50641:intron | 30.0% | |
| TGATATGCATGTATTTAAGG+CGG | - | chr1.2:53132463-53132482 | MS.gene50641:intron | 30.0% | |
| TGTGAAAGATAATGAGCTAA+TGG | - | chr1.2:53130851-53130870 | MS.gene50641:CDS | 30.0% | |
| TTCTGTGTATGACTTTGATA+AGG | - | chr1.2:53132738-53132757 | MS.gene50641:intron | 30.0% | |
| TTGAAATTGACACAGTAAGT+TGG | + | chr1.2:53131917-53131936 | None:intergenic | 30.0% | |
| TTTCTTGTTACCTATAAGTC+AGG | - | chr1.2:53131676-53131695 | MS.gene50641:intron | 30.0% | |
| ! | AACTAACTTTTGTGGAACTT+AGG | + | chr1.2:53131979-53131998 | None:intergenic | 30.0% |
| ! | ACTTTTATGCTATCAATAGG+TGG | - | chr1.2:53132328-53132347 | MS.gene50641:intron | 30.0% |
| ! | CTATTAACTTAAGCAGCTTT+TGG | - | chr1.2:53132713-53132732 | MS.gene50641:intron | 30.0% |
| ! | CTTTTATGCTATCAATAGGT+GGG | - | chr1.2:53132329-53132348 | MS.gene50641:intron | 30.0% |
| ! | GAATTAAGCATTTTCACTTG+AGG | + | chr1.2:53132877-53132896 | None:intergenic | 30.0% |
| ! | GTAGAAACAAACGTTTGTTT+TGG | - | chr1.2:53131707-53131726 | MS.gene50641:intron | 30.0% |
| !! | AGTTTGCATTTTGGAAATGA+TGG | - | chr1.2:53131145-53131164 | MS.gene50641:intron | 30.0% |
| !! | GTCTAGAAGTCTTATTAGAA+AGG | - | chr1.2:53131238-53131257 | MS.gene50641:intron | 30.0% |
| !! | TAGAAGTCTTATTAGAAAGG+TGG | - | chr1.2:53131241-53131260 | MS.gene50641:intron | 30.0% |
| !! | TATTTAGGAAGTACCTAGTT+TGG | + | chr1.2:53132827-53132846 | None:intergenic | 30.0% |
| !! | TGTAACAAGTTTGAGTTTTC+TGG | - | chr1.2:53131213-53131232 | MS.gene50641:intron | 30.0% |
| !!! | AGTTGGTAATCTTTTTACAG+TGG | + | chr1.2:53131900-53131919 | None:intergenic | 30.0% |
| !!! | ATTCCTGTTTTAACCAAACT+AGG | - | chr1.2:53132811-53132830 | MS.gene50641:intron | 30.0% |
| !!! | ATTGTTTTGAAGCTAATGGA+TGG | - | chr1.2:53131852-53131871 | MS.gene50641:intron | 30.0% |
| !!! | GAAACTGTTTTGGTTAAAAC+AGG | + | chr1.2:53132994-53133013 | None:intergenic | 30.0% |
| AAGCTAATGATTTCAGTCGT+TGG | - | chr1.2:53133049-53133068 | MS.gene50641:intron | 35.0% | |
| AATGGCTTCTACTGATGAAA+AGG | - | chr1.2:53132186-53132205 | MS.gene50641:intron | 35.0% | |
| ACAACTACTACCTGACTTAT+AGG | + | chr1.2:53131689-53131708 | None:intergenic | 35.0% | |
| ACACTTTCACTCAAAGACAT+TGG | + | chr1.2:53131306-53131325 | None:intergenic | 35.0% | |
| ACTCAAAGACATTGGGTTTA+TGG | + | chr1.2:53131298-53131317 | None:intergenic | 35.0% | |
| CACTTTCACTCAAAGACATT+GGG | + | chr1.2:53131305-53131324 | None:intergenic | 35.0% | |
| CATGAAATTAGTGAAACCAC+TGG | + | chr1.2:53131768-53131787 | None:intergenic | 35.0% | |
| CTTCTCCTATTGAGTAATGA+GGG | + | chr1.2:53131387-53131406 | None:intergenic | 35.0% | |
| GATTGACAGAATCATAAAGG+AGG | - | chr1.2:53130825-53130844 | MS.gene50641:CDS | 35.0% | |
| GTACCTAGTTTGGTTAAAAC+AGG | + | chr1.2:53132817-53132836 | None:intergenic | 35.0% | |
| GTCTGATAGTTACATGTAGA+GGG | - | chr1.2:53131451-53131470 | MS.gene50641:intron | 35.0% | |
| GTTAAGAAAAGGGGGTTTAA+CGG | + | chr1.2:53132665-53132684 | None:intergenic | 35.0% | |
| GTTAAGAGATTATCGGACAA+TGG | - | chr1.2:53131996-53132015 | MS.gene50641:CDS | 35.0% | |
| TAATTTCTCTCTCACTTGTG+TGG | - | chr1.2:53131325-53131344 | MS.gene50641:intron | 35.0% | |
| TAGATGTTGACATTATTGGC+AGG | - | chr1.2:53132609-53132628 | MS.gene50641:intron | 35.0% | |
| TAGTAAGGAAACACTTTGGT+TGG | - | chr1.2:53131593-53131612 | MS.gene50641:intron | 35.0% | |
| TCACTATTGCAGCTATTATC+AGG | + | chr1.2:53132924-53132943 | None:intergenic | 35.0% | |
| TCCTTTAGTCCAATGCAAAA+AGG | + | chr1.2:53130913-53130932 | None:intergenic | 35.0% | |
| TCTTCTCCTATTGAGTAATG+AGG | + | chr1.2:53131388-53131407 | None:intergenic | 35.0% | |
| TGTCTGATAGTTACATGTAG+AGG | - | chr1.2:53131450-53131469 | MS.gene50641:intron | 35.0% | |
| TGTTTATGTAGGAGATGTTG+TGG | - | chr1.2:53132096-53132115 | MS.gene50641:CDS | 35.0% | |
| TTAATAGACGTGCAAAACTG+TGG | + | chr1.2:53132700-53132719 | None:intergenic | 35.0% | |
| TTCTCCTATTGAGTAATGAG+GGG | + | chr1.2:53131386-53131405 | None:intergenic | 35.0% | |
| TTGATTACCTGTTCTGTACA+CGG | + | chr1.2:53133437-53133456 | None:intergenic | 35.0% | |
| TTTGACAGACGTGTTTATGT+AGG | - | chr1.2:53132085-53132104 | MS.gene50641:CDS | 35.0% | |
| ! | AACCAAAGTGTTTCCTTACT+AGG | + | chr1.2:53131594-53131613 | None:intergenic | 35.0% |
| ! | ACCTTTTTGCATTGGACTAA+AGG | - | chr1.2:53130909-53130928 | MS.gene50641:intron | 35.0% |
| ! | CATTTTCACTTTACGAACTC+AGG | + | chr1.2:53132964-53132983 | None:intergenic | 35.0% |
| ! | GAAAGATGACCTTTTTGCAT+TGG | - | chr1.2:53130901-53130920 | MS.gene50641:intron | 35.0% |
| ! | GAAATCATTAGCTTGAGTTC+AGG | + | chr1.2:53133043-53133062 | None:intergenic | 35.0% |
| ! | GAAATGATGGCAGAGTTTTA+TGG | - | chr1.2:53131158-53131177 | MS.gene50641:intron | 35.0% |
| ! | GAATCCTTTTGCATACTGAA+AGG | + | chr1.2:53133536-53133555 | None:intergenic | 35.0% |
| ! | GGCTCTTAAGTTTTTCTATG+TGG | - | chr1.2:53133070-53133089 | MS.gene50641:intron | 35.0% |
| ! | GGTAATCTTTTTACAGTGGA+GGG | + | chr1.2:53131896-53131915 | None:intergenic | 35.0% |
| ! | TATAAATTAGCTGGTTCCAG+TGG | - | chr1.2:53131749-53131768 | MS.gene50641:intron | 35.0% |
| ! | TGGTAATCTTTTTACAGTGG+AGG | + | chr1.2:53131897-53131916 | None:intergenic | 35.0% |
| !! | AAGTCTTATTAGAAAGGTGG+AGG | - | chr1.2:53131244-53131263 | MS.gene50641:intron | 35.0% |
| !! | AATTACTTTTGGTCGGGAAT+CGG | + | chr1.2:53130993-53131012 | None:intergenic | 35.0% |
| !! | TGTATTGAGCTTTGGATTGA+AGG | + | chr1.2:53130640-53130659 | None:intergenic | 35.0% |
| AACAAGAAGAGTAGCTCCTT+TGG | + | chr1.2:53130961-53130980 | None:intergenic | 40.0% | |
| ACCACACACGACAAATTGAA+AGG | + | chr1.2:53131046-53131065 | None:intergenic | 40.0% | |
| ACGATGTTGGTCATGTGAAT+TGG | + | chr1.2:53133372-53133391 | None:intergenic | 40.0% | |
| ACTAATTTCATGCTCATCCC+AGG | - | chr1.2:53131776-53131795 | MS.gene50641:intron | 40.0% | |
| ATCGATGGTGTATTGAGCTT+TGG | + | chr1.2:53130648-53130667 | None:intergenic | 40.0% | |
| ATTCACATGACCAACATCGT+AGG | - | chr1.2:53133372-53133391 | MS.gene50641:intron | 40.0% | |
| CACCTAGTAAGGAAACACTT+TGG | - | chr1.2:53131589-53131608 | MS.gene50641:intron | 40.0% | |
| CAGTCCTTTCAGTATGCAAA+AGG | - | chr1.2:53133529-53133548 | MS.gene50641:intron | 40.0% | |
| CGAATCGTTTGTTCTTGAGA+AGG | - | chr1.2:53132210-53132229 | MS.gene50641:intron | 40.0% | |
| CTATTCAAGAACGTGCTCAA+GGG | - | chr1.2:53131626-53131645 | MS.gene50641:intron | 40.0% | |
| CTCCTTTGGCATCAATAGTA+GGG | + | chr1.2:53130947-53130966 | None:intergenic | 40.0% | |
| GCAATTGACAGTCGAACATT+TGG | - | chr1.2:53133345-53133364 | MS.gene50641:CDS | 40.0% | |
| GGGAGTTCAAGGAAAACTAT+AGG | - | chr1.2:53131471-53131490 | MS.gene50641:intron | 40.0% | |
| TATTGGCAGGATCTAGATTC+TGG | - | chr1.2:53132622-53132641 | MS.gene50641:intron | 40.0% | |
| TCAAGTTCCATTTCCAACAC+TGG | + | chr1.2:53133560-53133579 | None:intergenic | 40.0% | |
| TCAATAGGTGGGTCATTGTT+AGG | - | chr1.2:53132340-53132359 | MS.gene50641:intron | 40.0% | |
| TCCTTTCAATTTGTCGTGTG+TGG | - | chr1.2:53131042-53131061 | MS.gene50641:intron | 40.0% | |
| TCCTTTGGCATCAATAGTAG+GGG | + | chr1.2:53130946-53130965 | None:intergenic | 40.0% | |
| TCTATTCAAGAACGTGCTCA+AGG | - | chr1.2:53131625-53131644 | MS.gene50641:intron | 40.0% | |
| TCTTGAGAAGGATCAGTGTT+GGG | - | chr1.2:53132222-53132241 | MS.gene50641:intron | 40.0% | |
| TGCGACTGAAGGTTATGAAA+TGG | - | chr1.2:53132168-53132187 | MS.gene50641:intron | 40.0% | |
| TTACATGTAGAGGGAGTTCA+AGG | - | chr1.2:53131460-53131479 | MS.gene50641:intron | 40.0% | |
| TTCAATGCTCCCAACACATA+TGG | - | chr1.2:53133316-53133335 | MS.gene50641:CDS | 40.0% | |
| TTCTTGAGAAGGATCAGTGT+TGG | - | chr1.2:53132221-53132240 | MS.gene50641:intron | 40.0% | |
| TTTGCATTGGACTAAAGGAG+AGG | - | chr1.2:53130914-53130933 | MS.gene50641:intron | 40.0% | |
| ! | CAAAGTGTTTCCTTACTAGG+TGG | + | chr1.2:53131591-53131610 | None:intergenic | 40.0% |
| ! | GAGATGAGAGTGTACATAAG+GGG | + | chr1.2:53132037-53132056 | None:intergenic | 40.0% |
| ! | GGAACTTGATGTTGATGAGA+TGG | - | chr1.2:53133571-53133590 | MS.gene50641:CDS | 40.0% |
| ! | GGAGATGAGAGTGTACATAA+GGG | + | chr1.2:53132038-53132057 | None:intergenic | 40.0% |
| ! | TGGAGATGAGAGTGTACATA+AGG | + | chr1.2:53132039-53132058 | None:intergenic | 40.0% |
| !! | GCAGAGTTTTATGGTAGTCT+GGG | - | chr1.2:53131167-53131186 | MS.gene50641:intron | 40.0% |
| ACAACATCTCCACACATACC+CGG | + | chr1.2:53131194-53131213 | None:intergenic | 45.0% | |
| ACATTGTGCACAAATGGCGA+TGG | - | chr1.2:53133472-53133491 | MS.gene50641:intron | 45.0% | |
| ACCCAGATCACAAGCATACA+CGG | + | chr1.2:53132771-53132790 | None:intergenic | 45.0% | |
| AGTAGCTGCAATGGTAACCT+GGG | - | chr1.2:53132849-53132868 | MS.gene50641:intron | 45.0% | |
| ATCAGAACTACCCTCCTTAC+TGG | + | chr1.2:53131423-53131442 | None:intergenic | 45.0% | |
| ATTGAGTAATGAGGGGAGCA+CGG | + | chr1.2:53131379-53131398 | None:intergenic | 45.0% | |
| CTTCTGACTAGATAGTCGTC+TGG | + | chr1.2:53132142-53132161 | None:intergenic | 45.0% | |
| GCAAAAGGATTCACCAGTGT+TGG | - | chr1.2:53133544-53133563 | MS.gene50641:CDS | 45.0% | |
| GCAACCTATTCGTTGCAGAA+AGG | + | chr1.2:53131656-53131675 | None:intergenic | 45.0% | |
| GCTCAATACACCATCGATCT+CGG | - | chr1.2:53130650-53130669 | MS.gene50641:CDS | 45.0% | |
| GCTCCTTTGGCATCAATAGT+AGG | + | chr1.2:53130948-53130967 | None:intergenic | 45.0% | |
| TAGTAGCTGCAATGGTAACC+TGG | - | chr1.2:53132848-53132867 | MS.gene50641:intron | 45.0% | |
| TGAACACATAACCACTGCCT+GGG | + | chr1.2:53131796-53131815 | None:intergenic | 45.0% | |
| TGAGCCTTTCTGCAACGAAT+AGG | - | chr1.2:53131649-53131668 | MS.gene50641:intron | 45.0% | |
| TGCTCCCCTCATTACTCAAT+AGG | - | chr1.2:53131379-53131398 | MS.gene50641:intron | 45.0% | |
| TGCTTCCTGCCATATGTGTT+GGG | + | chr1.2:53133328-53133347 | None:intergenic | 45.0% | |
| TTCTGGACATCAGTTGCCAT+CGG | - | chr1.2:53132639-53132658 | MS.gene50641:intron | 45.0% | |
| TTGAACACATAACCACTGCC+TGG | + | chr1.2:53131797-53131816 | None:intergenic | 45.0% | |
| TTGCTTCCTGCCATATGTGT+TGG | + | chr1.2:53133329-53133348 | None:intergenic | 45.0% | |
| TTGGACTAAAGGAGAGGAGA+TGG | - | chr1.2:53130920-53130939 | MS.gene50641:intron | 45.0% | |
| ! | AGAAGATTAGCTGCGACTGA+AGG | - | chr1.2:53132157-53132176 | MS.gene50641:intron | 45.0% |
| ! | CATTTTCACTTGAGGAACCC+AGG | + | chr1.2:53132869-53132888 | None:intergenic | 45.0% |
| ! | CTGCAATCGAAGCACTAACA+CGG | + | chr1.2:53131071-53131090 | None:intergenic | 45.0% |
| ! | GGATTCACCAGTGTTGGAAA+TGG | - | chr1.2:53133550-53133569 | MS.gene50641:CDS | 45.0% |
| ! | GTTTTATGGTAGTCTGGGTC+CGG | - | chr1.2:53131172-53131191 | MS.gene50641:intron | 45.0% |
| ! | TTTTATGGTAGTCTGGGTCC+GGG | - | chr1.2:53131173-53131192 | MS.gene50641:intron | 45.0% |
| !! | AAGGAGGGTAGTTCTGATTG+AGG | - | chr1.2:53131425-53131444 | MS.gene50641:intron | 45.0% |
| !! | GGCAGAGTTTTATGGTAGTC+TGG | - | chr1.2:53131166-53131185 | MS.gene50641:intron | 45.0% |
| !! | TTCGTCGATTCCACCTAGTA+AGG | - | chr1.2:53131578-53131597 | MS.gene50641:intron | 45.0% |
| !!! | AGATAGTCGTCTGGCTTTTC+AGG | + | chr1.2:53132133-53132152 | None:intergenic | 45.0% |
| !!! | GATAGTCGTCTGGCTTTTCA+GGG | + | chr1.2:53132132-53132151 | None:intergenic | 45.0% |
| ATGCTCCCAACACATATGGC+AGG | - | chr1.2:53133320-53133339 | MS.gene50641:CDS | 50.0% | |
| CACGGAGGATCATCCACATT+GGG | + | chr1.2:53131361-53131380 | None:intergenic | 50.0% | |
| CAGCATTTCGCAGGCAGTAT+AGG | + | chr1.2:53133404-53133423 | None:intergenic | 50.0% | |
| CATGGTCTACAGCATTTCGC+AGG | + | chr1.2:53133413-53133432 | None:intergenic | 50.0% | |
| CTCCTTACTGGTGCGTCAAA+GGG | + | chr1.2:53131411-53131430 | None:intergenic | 50.0% | |
| CTGCGAAATGCTGTAGACCA+TGG | - | chr1.2:53133411-53133430 | MS.gene50641:intron | 50.0% | |
| CTTTGACGCACCAGTAAGGA+GGG | - | chr1.2:53131410-53131429 | MS.gene50641:intron | 50.0% | |
| GCCCCTACTATTGATGCCAA+AGG | - | chr1.2:53130942-53130961 | MS.gene50641:intron | 50.0% | |
| GCCGTGTATGCTTGTGATCT+GGG | - | chr1.2:53132767-53132786 | MS.gene50641:intron | 50.0% | |
| GTGCTTCGATTGCAGAGACA+CGG | - | chr1.2:53131076-53131095 | MS.gene50641:intron | 50.0% | |
| TAGGACTCTGCCTACGATGT+TGG | + | chr1.2:53133385-53133404 | None:intergenic | 50.0% | |
| ! | GAAGGATCAGTGTTGGGTAG+TGG | - | chr1.2:53132228-53132247 | MS.gene50641:intron | 50.0% |
| AAAGGGGGTTTAACGGCCGA+TGG | + | chr1.2:53132658-53132677 | None:intergenic | 55.0% | |
| ACCATGGCCGTGTACAGAAC+AGG | - | chr1.2:53133427-53133446 | MS.gene50641:intron | 55.0% | |
| ACCTGTTCTGTACACGGCCA+TGG | + | chr1.2:53133431-53133450 | None:intergenic | 55.0% | |
| CACCATCGATCTCGGCTACA+AGG | - | chr1.2:53130658-53130677 | MS.gene50641:CDS | 55.0% | |
| CCTCCTTACTGGTGCGTCAA+AGG | + | chr1.2:53131412-53131431 | None:intergenic | 55.0% | |
| CCTTTGACGCACCAGTAAGG+AGG | - | chr1.2:53131409-53131428 | MS.gene50641:intron | 55.0% | |
| GACCCTTTGACGCACCAGTA+AGG | - | chr1.2:53131406-53131425 | MS.gene50641:intron | 55.0% | |
| GACCTTGTAGCCGAGATCGA+TGG | + | chr1.2:53130663-53130682 | None:intergenic | 55.0% | |
| GCACGGAGGATCATCCACAT+TGG | + | chr1.2:53131362-53131381 | None:intergenic | 55.0% | |
| GGCCGTGTATGCTTGTGATC+TGG | - | chr1.2:53132766-53132785 | MS.gene50641:intron | 55.0% | |
| GTAGCGACACCACGTTGTGA+AGG | + | chr1.2:53130618-53130637 | None:intergenic | 55.0% | |
| TTCATGCTCATCCCAGGCAG+TGG | - | chr1.2:53131782-53131801 | MS.gene50641:intron | 55.0% | |
| ! | TGGTTGCTCTGAGCCCAATG+TGG | - | chr1.2:53131345-53131364 | MS.gene50641:intron | 55.0% |
| AGTCTGGGTCCGGGTATGTG+TGG | - | chr1.2:53131182-53131201 | MS.gene50641:intron | 60.0% | |
| ! | GAGTAATGAGGGGAGCACGG+AGG | + | chr1.2:53131376-53131395 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53130608 | 53133613 | 53130608 | ID=MS.gene50641 |
| chr1.2 | mRNA | 53130608 | 53133613 | 53130608 | ID=MS.gene50641.t1;Parent=MS.gene50641 |
| chr1.2 | exon | 53133542 | 53133613 | 53133542 | ID=MS.gene50641.t1.exon1;Parent=MS.gene50641.t1 |
| chr1.2 | CDS | 53133542 | 53133613 | 53133542 | ID=cds.MS.gene50641.t1;Parent=MS.gene50641.t1 |
| chr1.2 | exon | 53133215 | 53133387 | 53133215 | ID=MS.gene50641.t1.exon2;Parent=MS.gene50641.t1 |
| chr1.2 | CDS | 53133215 | 53133387 | 53133215 | ID=cds.MS.gene50641.t1;Parent=MS.gene50641.t1 |
| chr1.2 | exon | 53131945 | 53132128 | 53131945 | ID=MS.gene50641.t1.exon3;Parent=MS.gene50641.t1 |
| chr1.2 | CDS | 53131945 | 53132128 | 53131945 | ID=cds.MS.gene50641.t1;Parent=MS.gene50641.t1 |
| chr1.2 | exon | 53130773 | 53130879 | 53130773 | ID=MS.gene50641.t1.exon4;Parent=MS.gene50641.t1 |
| chr1.2 | CDS | 53130773 | 53130879 | 53130773 | ID=cds.MS.gene50641.t1;Parent=MS.gene50641.t1 |
| chr1.2 | exon | 53130608 | 53130689 | 53130608 | ID=MS.gene50641.t1.exon5;Parent=MS.gene50641.t1 |
| chr1.2 | CDS | 53130608 | 53130689 | 53130608 | ID=cds.MS.gene50641.t1;Parent=MS.gene50641.t1 |
| Gene Sequence |
| Protein sequence |
