Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51311.t1 | RYQ79443.1 | 60 | 135 | 37 | 1 | 1 | 118 | 328 | 462 | 4.60E-33 | 150.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51311.t1 | Q9SLX0 | 84.3 | 51 | 8 | 0 | 5 | 55 | 301 | 351 | 1.0e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51311.t1 | A0A444WPU7 | 60.0 | 135 | 37 | 1 | 1 | 118 | 328 | 462 | 3.3e-33 | 150.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene51311 | 0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene51311 | 0.806444 | 8.20E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene51311 | 0.817147 | 3.83E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene51311 | 0.815352 | 9.66E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene51311 | 0.800666 | 1.29E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene51311 | 0.803273 | 3.77E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene51311 | 0.816882 | 4.40E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene51311 | 0.807698 | 4.45E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene51311 | 0.801985 | 6.95E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene51311 | 0.809151 | 2.18E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene51311 | 0.804626 | 1.97E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene51311 | 0.802935 | 4.43E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene51311 | 0.807733 | 4.38E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene51311 | 0.812944 | 3.29E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene51311 | 0.819699 | 1.01E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene51311 | 0.810934 | 9.00E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51311.t1 | MTR_2g034900 | 95.614 | 114 | 5 | 0 | 5 | 118 | 296 | 409 | 8.74e-73 | 225 |
| MS.gene51311.t1 | MTR_4g131510 | 85.088 | 114 | 17 | 0 | 5 | 118 | 219 | 332 | 1.23e-65 | 204 |
| MS.gene51311.t1 | MTR_8g027585 | 81.579 | 114 | 21 | 0 | 5 | 118 | 212 | 325 | 1.52e-62 | 197 |
| MS.gene51311.t1 | MTR_1g083810 | 82.456 | 114 | 20 | 0 | 5 | 118 | 297 | 410 | 1.68e-62 | 199 |
| MS.gene51311.t1 | MTR_7g112350 | 79.825 | 114 | 23 | 0 | 5 | 118 | 297 | 410 | 9.21e-59 | 189 |
| MS.gene51311.t1 | MTR_4g133040 | 79.130 | 115 | 24 | 0 | 4 | 118 | 229 | 343 | 9.72e-59 | 188 |
| MS.gene51311.t1 | MTR_4g132980 | 76.522 | 115 | 27 | 0 | 5 | 119 | 62 | 176 | 5.65e-56 | 177 |
| MS.gene51311.t1 | MTR_4g121435 | 76.724 | 116 | 26 | 1 | 4 | 118 | 298 | 413 | 6.15e-56 | 181 |
| MS.gene51311.t1 | MTR_4g132980 | 76.522 | 115 | 27 | 0 | 5 | 119 | 190 | 304 | 9.25e-55 | 177 |
| MS.gene51311.t1 | MTR_4g127570 | 78.261 | 115 | 24 | 1 | 5 | 118 | 146 | 260 | 2.73e-49 | 162 |
| MS.gene51311.t1 | MTR_4g133030 | 75.439 | 114 | 28 | 0 | 5 | 118 | 217 | 330 | 6.32e-48 | 160 |
| MS.gene51311.t1 | MTR_4g131000 | 78.070 | 114 | 24 | 1 | 5 | 118 | 218 | 330 | 1.03e-46 | 156 |
| MS.gene51311.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 4.05e-45 | 148 |
| MS.gene51311.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 6.26e-45 | 148 |
| MS.gene51311.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 3.67e-44 | 147 |
| MS.gene51311.t1 | MTR_4g132960 | 75.269 | 93 | 23 | 0 | 26 | 118 | 3 | 95 | 1.42e-37 | 126 |
| MS.gene51311.t1 | MTR_4g132967 | 75.269 | 93 | 23 | 0 | 26 | 118 | 7 | 99 | 1.18e-36 | 124 |
| MS.gene51311.t1 | MTR_7g112150 | 50.000 | 114 | 54 | 3 | 5 | 118 | 317 | 427 | 6.77e-27 | 103 |
| MS.gene51311.t1 | MTR_7g113400 | 50.893 | 112 | 52 | 3 | 5 | 116 | 316 | 424 | 1.17e-26 | 102 |
| MS.gene51311.t1 | MTR_4g124270 | 79.310 | 58 | 12 | 0 | 32 | 89 | 65 | 122 | 3.09e-25 | 93.6 |
| MS.gene51311.t1 | MTR_7g112160 | 47.368 | 114 | 57 | 3 | 5 | 118 | 317 | 427 | 9.04e-24 | 94.7 |
| MS.gene51311.t1 | MTR_4g013265 | 46.957 | 115 | 17 | 2 | 5 | 118 | 134 | 205 | 1.63e-22 | 90.1 |
| MS.gene51311.t1 | MTR_1g066760 | 36.190 | 105 | 60 | 2 | 7 | 105 | 310 | 413 | 2.16e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51311.t1 | AT3G06720 | 82.456 | 114 | 20 | 0 | 5 | 118 | 295 | 408 | 8.99e-61 | 194 |
| MS.gene51311.t1 | AT3G06720 | 82.456 | 114 | 20 | 0 | 5 | 118 | 295 | 408 | 8.99e-61 | 194 |
| MS.gene51311.t1 | AT4G16143 | 82.609 | 115 | 20 | 0 | 4 | 118 | 299 | 413 | 2.10e-56 | 183 |
| MS.gene51311.t1 | AT4G16143 | 82.609 | 115 | 20 | 0 | 4 | 118 | 299 | 413 | 2.10e-56 | 183 |
| MS.gene51311.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 220 | 333 | 2.91e-56 | 181 |
| MS.gene51311.t1 | AT4G02150 | 75.893 | 112 | 27 | 0 | 5 | 116 | 298 | 409 | 3.45e-56 | 179 |
| MS.gene51311.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 302 | 415 | 6.11e-56 | 182 |
| MS.gene51311.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 302 | 415 | 6.11e-56 | 182 |
| MS.gene51311.t1 | AT4G02150 | 74.561 | 114 | 29 | 0 | 5 | 118 | 298 | 411 | 1.31e-55 | 181 |
| MS.gene51311.t1 | AT1G02690 | 72.807 | 114 | 31 | 0 | 5 | 118 | 300 | 413 | 7.13e-54 | 176 |
| MS.gene51311.t1 | AT1G02690 | 72.807 | 114 | 31 | 0 | 5 | 118 | 299 | 412 | 7.87e-54 | 176 |
| MS.gene51311.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 5 | 118 | 283 | 396 | 3.35e-43 | 148 |
| MS.gene51311.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 5 | 118 | 283 | 396 | 3.35e-43 | 148 |
| MS.gene51311.t1 | AT5G49310 | 61.739 | 115 | 44 | 0 | 4 | 118 | 292 | 406 | 1.89e-42 | 145 |
| MS.gene51311.t1 | AT5G52000 | 56.637 | 113 | 49 | 0 | 6 | 118 | 224 | 336 | 2.40e-38 | 134 |
| MS.gene51311.t1 | AT1G32880 | 60.417 | 48 | 19 | 0 | 71 | 118 | 40 | 87 | 1.37e-12 | 61.2 |
| MS.gene51311.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51311.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51311.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51311.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51311.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene51311.t1 | AT5G03070 | 30.769 | 104 | 67 | 1 | 7 | 105 | 310 | 413 | 6.34e-11 | 58.5 |
Find 25 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGAGGTTACCTGTATC+TGG | 0.286161 | 4.1:-49952502 | None:intergenic |
| TCTTGTGATTATGGGTCAAC+AGG | 0.349313 | 4.1:-49952421 | None:intergenic |
| GTATTAAGAAAGAAGCTTGC+TGG | 0.380667 | 4.1:+49952447 | MS.gene51311:CDS |
| AGCCGGACTGATTGCTCCTC+TGG | 0.418448 | 4.1:+49952960 | MS.gene51311:CDS |
| CACATACTTGATTTGCTCAT+GGG | 0.461333 | 4.1:-49953061 | None:intergenic |
| TTTCCCACCGTACGAAGTGC+AGG | 0.474639 | 4.1:-49951069 | None:intergenic |
| TCACATACTTGATTTGCTCA+TGG | 0.478259 | 4.1:-49953062 | None:intergenic |
| GCACTCTCCAATGCTACATC+TGG | 0.481318 | 4.1:+49953033 | MS.gene51311:CDS |
| ATTATATCAAACATTACAGC+TGG | 0.506298 | 4.1:+49952470 | MS.gene51311:CDS |
| ACGGTGGGAAATATTGTAAC+GGG | 0.520713 | 4.1:+49951081 | MS.gene51311:CDS |
| GGGATCAGCACTGAAGGAGA+TGG | 0.533434 | 4.1:-49951048 | None:intergenic |
| ATGTAGGCTGTTATTGAAGC+CGG | 0.538904 | 4.1:+49952943 | MS.gene51311:intron |
| GCTGATCCCTGCACTTCGTA+CGG | 0.546568 | 4.1:+49951062 | MS.gene51311:CDS |
| GGGAGATGATGCGCAGACTC+AGG | 0.546817 | 4.1:+49951101 | MS.gene51311:CDS |
| ATCCCTGCACTTCGTACGGT+GGG | 0.552774 | 4.1:+49951066 | MS.gene51311:CDS |
| GACCAGAGGAGCAATCAGTC+CGG | 0.553350 | 4.1:-49952962 | None:intergenic |
| TGGAAACAAAGACCAGATAC+AGG | 0.554927 | 4.1:+49952490 | MS.gene51311:CDS |
| GTCAACAGGCTCAAAAGACA+TGG | 0.559325 | 4.1:-49952407 | None:intergenic |
| AGTGCAGGGATCAGCACTGA+AGG | 0.573114 | 4.1:-49951054 | None:intergenic |
| GATCCCTGCACTTCGTACGG+TGG | 0.581176 | 4.1:+49951065 | MS.gene51311:CDS |
| GGTACCGCCAGATGTAGCAT+TGG | 0.592074 | 4.1:-49953040 | None:intergenic |
| TACGGTGGGAAATATTGTAA+CGG | 0.612298 | 4.1:+49951080 | MS.gene51311:CDS |
| CTCTCCAATGCTACATCTGG+CGG | 0.629473 | 4.1:+49953036 | MS.gene51311:CDS |
| TTCCCACCGTACGAAGTGCA+GGG | 0.641796 | 4.1:-49951068 | None:intergenic |
| TCAACAGGCTCAAAAGACAT+GGG | 0.682804 | 4.1:-49952406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTACTAAATTTTAATA+TGG | - | chr4.1:49951201-49951220 | None:intergenic | 10.0% |
| !! | ACTAATTAATGCTATATATT+TGG | + | chr4.1:49951766-49951785 | MS.gene51311:intron | 15.0% |
| !! | CAAAGAAATAATTAATAGTA+GGG | - | chr4.1:49951464-49951483 | None:intergenic | 15.0% |
| !!! | AAAAAAACAAATGTTTGTTA+TGG | + | chr4.1:49952094-49952113 | MS.gene51311:intron | 15.0% |
| !!! | AAAAAACAAATGTTTGTTAT+GGG | + | chr4.1:49952095-49952114 | MS.gene51311:intron | 15.0% |
| !!! | ATTCAAATTTGATGTTTTTT+GGG | + | chr4.1:49952606-49952625 | MS.gene51311:intron | 15.0% |
| !!! | TATTCAAATTTGATGTTTTT+TGG | + | chr4.1:49952605-49952624 | MS.gene51311:intron | 15.0% |
| !! | AAAAAATAGAGATATATTGG+TGG | + | chr4.1:49952162-49952181 | MS.gene51311:intron | 20.0% |
| !! | AGTTATGTATGTAATTGAAA+TGG | - | chr4.1:49952799-49952818 | None:intergenic | 20.0% |
| !! | CCAAAGAAATAATTAATAGT+AGG | - | chr4.1:49951465-49951484 | None:intergenic | 20.0% |
| !! | TTTATGTATTTACAACAGAA+TGG | - | chr4.1:49952762-49952781 | None:intergenic | 20.0% |
| !! | TTTGCAAGTAATTAGATTTA+GGG | + | chr4.1:49951338-49951357 | MS.gene51311:intron | 20.0% |
| !!! | AATACTTTTCTTGTGATTAT+GGG | - | chr4.1:49952432-49952451 | None:intergenic | 20.0% |
| !!! | ACCAATATATCTCTATTTTT+TGG | - | chr4.1:49952163-49952182 | None:intergenic | 20.0% |
| !!! | CCTACTATTAATTATTTCTT+TGG | + | chr4.1:49951462-49951481 | MS.gene51311:intron | 20.0% |
| !!! | TAATACTTTTCTTGTGATTA+TGG | - | chr4.1:49952433-49952452 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTAATGTCAAACT+CGG | - | chr4.1:49953004-49953023 | None:intergenic | 20.0% |
| !!! | TTTTGCAAGTAATTAGATTT+AGG | + | chr4.1:49951337-49951356 | MS.gene51311:intron | 20.0% |
| ! | AAACGACACTTAAAAATGAA+CGG | + | chr4.1:49952255-49952274 | MS.gene51311:intron | 25.0% |
| ! | AAGATATGAGTAATTGACAA+AGG | - | chr4.1:49951710-49951729 | None:intergenic | 25.0% |
| ! | AATCCAACAATTACTCTAAT+TGG | - | chr4.1:49952715-49952734 | None:intergenic | 25.0% |
| ! | AATTGAGTTATCATGAACAT+GGG | - | chr4.1:49952528-49952547 | None:intergenic | 25.0% |
| ! | AGATATGAGTAATTGACAAA+GGG | - | chr4.1:49951709-49951728 | None:intergenic | 25.0% |
| ! | ATTATATCAAACATTACAGC+TGG | + | chr4.1:49952470-49952489 | MS.gene51311:CDS | 25.0% |
| ! | GCCAAAAAATAGAGATATAT+TGG | + | chr4.1:49952159-49952178 | MS.gene51311:intron | 25.0% |
| ! | GTTGTAAATACATAAAAGAC+AGG | + | chr4.1:49952766-49952785 | MS.gene51311:intron | 25.0% |
| ! | TACAACAGAATGGAAAATAA+GGG | - | chr4.1:49952752-49952771 | None:intergenic | 25.0% |
| ! | TTACAACAGAATGGAAAATA+AGG | - | chr4.1:49952753-49952772 | None:intergenic | 25.0% |
| !! | AAACACATACTTTAGCATTT+TGG | - | chr4.1:49951370-49951389 | None:intergenic | 25.0% |
| !! | CTAAATCAGTACTTTATTTC+AGG | - | chr4.1:49951245-49951264 | None:intergenic | 25.0% |
| !! | TAATTGACAAAGGGTATAAT+TGG | - | chr4.1:49951700-49951719 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTGAACATTCA+TGG | - | chr4.1:49951995-49952014 | None:intergenic | 25.0% |
| !!! | ATATTGGTGGATTAAATTGA+GGG | + | chr4.1:49952175-49952194 | MS.gene51311:intron | 25.0% |
| !!! | GTTAGCTTATTTTCTGAAAA+AGG | + | chr4.1:49952898-49952917 | MS.gene51311:intron | 25.0% |
| !!! | TATATTGGTGGATTAAATTG+AGG | + | chr4.1:49952174-49952193 | MS.gene51311:intron | 25.0% |
| AAACGACACTTAAAAAGGAA+CGG | - | chr4.1:49951618-49951637 | None:intergenic | 30.0% | |
| AAATACATAAAAGACAGGTG+TGG | + | chr4.1:49952771-49952790 | MS.gene51311:intron | 30.0% | |
| ACACCAATTAGAGTAATTGT+TGG | + | chr4.1:49952709-49952728 | MS.gene51311:intron | 30.0% | |
| ACATTAAAAAAGAAGCTGCA+TGG | + | chr4.1:49953010-49953029 | MS.gene51311:CDS | 30.0% | |
| AGAGTAATTGTTGGATTGTT+AGG | + | chr4.1:49952718-49952737 | MS.gene51311:intron | 30.0% | |
| CAAAATCAGATAACTCTCAA+AGG | - | chr4.1:49952344-49952363 | None:intergenic | 30.0% | |
| CAATTGAGTTATCATGAACA+TGG | - | chr4.1:49952529-49952548 | None:intergenic | 30.0% | |
| CATTAAAAAAGAAGCTGCAT+GGG | + | chr4.1:49953011-49953030 | MS.gene51311:CDS | 30.0% | |
| CTTGTGAATTGTTCAACAAT+TGG | + | chr4.1:49951138-49951157 | MS.gene51311:intron | 30.0% | |
| GAACCATTTATGTATGATGT+AGG | + | chr4.1:49952927-49952946 | MS.gene51311:intron | 30.0% | |
| TACCATAACGACAGTTAAAT+AGG | - | chr4.1:49951659-49951678 | None:intergenic | 30.0% | |
| TCTTTGGTCAATTAACCTAA+TGG | + | chr4.1:49951478-49951497 | MS.gene51311:intron | 30.0% | |
| TGTAGATATATTTACTTCCC+AGG | + | chr4.1:49952682-49952701 | MS.gene51311:intron | 30.0% | |
| TGTTCAAAAAGAAGAAAGAG+TGG | + | chr4.1:49951999-49952018 | MS.gene51311:intron | 30.0% | |
| TTCCTATTTAACTGTCGTTA+TGG | + | chr4.1:49951654-49951673 | MS.gene51311:intron | 30.0% | |
| ! | ACTGTCGTTATGGTATTTTA+AGG | + | chr4.1:49951664-49951683 | MS.gene51311:intron | 30.0% |
| ! | GAGAGTTATCTGATTTTGTT+GGG | + | chr4.1:49952346-49952365 | MS.gene51311:intron | 30.0% |
| ! | TACAATGATTGTTATTGCAC+CGG | - | chr4.1:49952658-49952677 | None:intergenic | 30.0% |
| ! | TGAGAGTTATCTGATTTTGT+TGG | + | chr4.1:49952345-49952364 | MS.gene51311:intron | 30.0% |
| !! | CTGTCGTTATGGTATTTTAA+GGG | + | chr4.1:49951665-49951684 | MS.gene51311:intron | 30.0% |
| !!! | AATTCACTTTGCTATTTTCG+TGG | + | chr4.1:49952222-49952241 | MS.gene51311:intron | 30.0% |
| !!! | CCTTTTTAAGTGTCGTTTTA+GGG | + | chr4.1:49951620-49951639 | MS.gene51311:intron | 30.0% |
| !!! | TAGTGTTGTGTTGGTAATTT+TGG | + | chr4.1:49951262-49951281 | MS.gene51311:intron | 30.0% |
| !!! | TCCTTTTTAAGTGTCGTTTT+AGG | + | chr4.1:49951619-49951638 | MS.gene51311:intron | 30.0% |
| !!! | TGCCATTTTGTTTTCTGTTT+GGG | + | chr4.1:49952832-49952851 | MS.gene51311:intron | 30.0% |
| !!! | TTGCCATTTTGTTTTCTGTT+TGG | + | chr4.1:49952831-49952850 | MS.gene51311:intron | 30.0% |
| ACCCCAAACAGAAAACAAAA+TGG | - | chr4.1:49952837-49952856 | None:intergenic | 35.0% | |
| ACTCTAATTGGTGTATAACC+TGG | - | chr4.1:49952703-49952722 | None:intergenic | 35.0% | |
| AGACTCAGGTAATGTCATAA+TGG | + | chr4.1:49951115-49951134 | MS.gene51311:intron | 35.0% | |
| AGACTCATTGGAACTACTAA+TGG | + | chr4.1:49952023-49952042 | MS.gene51311:intron | 35.0% | |
| CAGCCTACATCATACATAAA+TGG | - | chr4.1:49952933-49952952 | None:intergenic | 35.0% | |
| CCCTAAAACGACACTTAAAA+AGG | - | chr4.1:49951623-49951642 | None:intergenic | 35.0% | |
| CTCTAATTGGTGTATAACCT+GGG | - | chr4.1:49952702-49952721 | None:intergenic | 35.0% | |
| GACACTTAAAAATGAACGGA+GGG | + | chr4.1:49952259-49952278 | MS.gene51311:intron | 35.0% | |
| GTATTAAGAAAGAAGCTTGC+TGG | + | chr4.1:49952447-49952466 | MS.gene51311:CDS | 35.0% | |
| GTGAGCATAACTCATTCATA+GGG | - | chr4.1:49951569-49951588 | None:intergenic | 35.0% | |
| GTTATCATGAACATGGGATT+TGG | - | chr4.1:49952522-49952541 | None:intergenic | 35.0% | |
| TACGGTGGGAAATATTGTAA+CGG | + | chr4.1:49951080-49951099 | MS.gene51311:CDS | 35.0% | |
| TCATTGGAACTACTAATGGA+AGG | + | chr4.1:49952027-49952046 | MS.gene51311:intron | 35.0% | |
| ! | GTATCACATGCTGTTTAACA+TGG | + | chr4.1:49952628-49952647 | MS.gene51311:intron | 35.0% |
| ! | TCTTTTTGTCAGGCTGTTAT+TGG | + | chr4.1:49952371-49952390 | MS.gene51311:intron | 35.0% |
| !! | CACATACTTGATTTGCTCAT+GGG | - | chr4.1:49953064-49953083 | None:intergenic | 35.0% |
| !! | GTACTGATTTAGTGTTGTGT+TGG | + | chr4.1:49951253-49951272 | MS.gene51311:intron | 35.0% |
| !! | TCACATACTTGATTTGCTCA+TGG | - | chr4.1:49953065-49953084 | None:intergenic | 35.0% |
| !! | TTTTGAAGAAGATTGACCAG+AGG | - | chr4.1:49952979-49952998 | None:intergenic | 35.0% |
| !!! | GCCATTTTGTTTTCTGTTTG+GGG | + | chr4.1:49952833-49952852 | MS.gene51311:intron | 35.0% |
| ACGGTGGGAAATATTGTAAC+GGG | + | chr4.1:49951081-49951100 | MS.gene51311:CDS | 40.0% | |
| ACTACTAATGGAAGGTGAAG+AGG | + | chr4.1:49952035-49952054 | MS.gene51311:intron | 40.0% | |
| AGAAAGAGTGGAAGACTCAT+TGG | + | chr4.1:49952011-49952030 | MS.gene51311:intron | 40.0% | |
| ATAGGGACATCACAATATGC+AGG | - | chr4.1:49951552-49951571 | None:intergenic | 40.0% | |
| ATCATGAACATGGGATTTGG+AGG | - | chr4.1:49952519-49952538 | None:intergenic | 40.0% | |
| ATGAATGAGTTATGCTCACG+TGG | + | chr4.1:49951570-49951589 | MS.gene51311:intron | 40.0% | |
| ATGTAGGCTGTTATTGAAGC+CGG | + | chr4.1:49952943-49952962 | MS.gene51311:intron | 40.0% | |
| ATTTGGAGGTTACCTGTATC+TGG | - | chr4.1:49952505-49952524 | None:intergenic | 40.0% | |
| CGACACTTAAAAATGAACGG+AGG | + | chr4.1:49952258-49952277 | MS.gene51311:intron | 40.0% | |
| CGTGAGCATAACTCATTCAT+AGG | - | chr4.1:49951570-49951589 | None:intergenic | 40.0% | |
| CTACTAATGGAAGGTGAAGA+GGG | + | chr4.1:49952036-49952055 | MS.gene51311:intron | 40.0% | |
| TAGGGACATCACAATATGCA+GGG | - | chr4.1:49951551-49951570 | None:intergenic | 40.0% | |
| TCAACAGGCTCAAAAGACAT+GGG | - | chr4.1:49952409-49952428 | None:intergenic | 40.0% | |
| TCTTGTGATTATGGGTCAAC+AGG | - | chr4.1:49952424-49952443 | None:intergenic | 40.0% | |
| TGGAAACAAAGACCAGATAC+AGG | + | chr4.1:49952490-49952509 | MS.gene51311:CDS | 40.0% | |
| TGGTCAATTAACCTAATGGC+TGG | + | chr4.1:49951482-49951501 | MS.gene51311:intron | 40.0% | |
| ! | TGCTGTTTAACATGGAGATC+CGG | + | chr4.1:49952636-49952655 | MS.gene51311:intron | 40.0% |
| ! | TTGTTGGGACTCTTTTTGTC+AGG | + | chr4.1:49952361-49952380 | MS.gene51311:intron | 40.0% |
| !! | TGAATTTCTAGCCAGCCATT+AGG | - | chr4.1:49951496-49951515 | None:intergenic | 40.0% |
| ACCCCTTGAGATGAGTAAGT+GGG | + | chr4.1:49951515-49951534 | MS.gene51311:intron | 45.0% | |
| AGGGACATCACAATATGCAG+GGG | - | chr4.1:49951550-49951569 | None:intergenic | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | - | chr4.1:49951615-49951634 | None:intergenic | 45.0% | |
| GTCAACAGGCTCAAAAGACA+TGG | - | chr4.1:49952410-49952429 | None:intergenic | 45.0% | |
| TCCCCACTTACTCATCTCAA+GGG | - | chr4.1:49951520-49951539 | None:intergenic | 45.0% | |
| TTCCCCACTTACTCATCTCA+AGG | - | chr4.1:49951521-49951540 | None:intergenic | 45.0% | |
| !! | AAATTTAATTAGAAATAATT+AGG | - | chr4.1:49951170-49951189 | None:intergenic | 5.0% |
| ACATCACAATATGCAGGGGC+CGG | - | chr4.1:49951546-49951565 | None:intergenic | 50.0% | |
| CACCCCTTGAGATGAGTAAG+TGG | + | chr4.1:49951514-49951533 | MS.gene51311:intron | 50.0% | |
| CCCCACTTACTCATCTCAAG+GGG | - | chr4.1:49951519-49951538 | None:intergenic | 50.0% | |
| CCCCTTGAGATGAGTAAGTG+GGG | + | chr4.1:49951516-49951535 | MS.gene51311:intron | 50.0% | |
| CTCTCCAATGCTACATCTGG+CGG | + | chr4.1:49953036-49953055 | MS.gene51311:CDS | 50.0% | |
| GCACTCTCCAATGCTACATC+TGG | + | chr4.1:49953033-49953052 | MS.gene51311:CDS | 50.0% | |
| ATCACAATATGCAGGGGCCG+GGG | - | chr4.1:49951544-49951563 | None:intergenic | 55.0% | |
| ATCCCTGCACTTCGTACGGT+GGG | + | chr4.1:49951066-49951085 | MS.gene51311:CDS | 55.0% | |
| CATCACAATATGCAGGGGCC+GGG | - | chr4.1:49951545-49951564 | None:intergenic | 55.0% | |
| GACCAGAGGAGCAATCAGTC+CGG | - | chr4.1:49952965-49952984 | None:intergenic | 55.0% | |
| GATGAGTAAGTGGGGAACCC+CGG | + | chr4.1:49951524-49951543 | MS.gene51311:intron | 55.0% | |
| GCTGATCCCTGCACTTCGTA+CGG | + | chr4.1:49951062-49951081 | MS.gene51311:CDS | 55.0% | |
| GGTACCGCCAGATGTAGCAT+TGG | - | chr4.1:49953043-49953062 | None:intergenic | 55.0% | |
| TTCCCACCGTACGAAGTGCA+GGG | - | chr4.1:49951071-49951090 | None:intergenic | 55.0% | |
| TTTCCCACCGTACGAAGTGC+AGG | - | chr4.1:49951072-49951091 | None:intergenic | 55.0% | |
| ! | AGTGCAGGGATCAGCACTGA+AGG | - | chr4.1:49951057-49951076 | None:intergenic | 55.0% |
| ! | GGGATCAGCACTGAAGGAGA+TGG | - | chr4.1:49951051-49951070 | None:intergenic | 55.0% |
| AGCCGGACTGATTGCTCCTC+TGG | + | chr4.1:49952960-49952979 | MS.gene51311:CDS | 60.0% | |
| GATCCCTGCACTTCGTACGG+TGG | + | chr4.1:49951065-49951084 | MS.gene51311:CDS | 60.0% | |
| GGGAGATGATGCGCAGACTC+AGG | + | chr4.1:49951101-49951120 | MS.gene51311:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 49951033 | 49953089 | 49951033 | ID=MS.gene51311 |
| chr4.1 | mRNA | 49951033 | 49953089 | 49951033 | ID=MS.gene51311.t1;Parent=MS.gene51311 |
| chr4.1 | exon | 49951033 | 49951122 | 49951033 | ID=MS.gene51311.t1.exon1;Parent=MS.gene51311.t1 |
| chr4.1 | CDS | 49951033 | 49951122 | 49951033 | ID=cds.MS.gene51311.t1;Parent=MS.gene51311.t1 |
| chr4.1 | exon | 49952383 | 49952511 | 49952383 | ID=MS.gene51311.t1.exon2;Parent=MS.gene51311.t1 |
| chr4.1 | CDS | 49952383 | 49952511 | 49952383 | ID=cds.MS.gene51311.t1;Parent=MS.gene51311.t1 |
| chr4.1 | exon | 49952949 | 49953089 | 49952949 | ID=MS.gene51311.t1.exon3;Parent=MS.gene51311.t1 |
| chr4.1 | CDS | 49952949 | 49953089 | 49952949 | ID=cds.MS.gene51311.t1;Parent=MS.gene51311.t1 |
| Gene Sequence |
| Protein sequence |
