Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52042.t1 | KEH32916.1 | 98.4 | 366 | 6 | 0 | 1 | 366 | 14 | 379 | 9.70E-199 | 702.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52042.t1 | Q9M2V1 | 71.3 | 324 | 92 | 1 | 32 | 354 | 73 | 396 | 3.2e-126 | 453.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52042.t1 | A0A072UTH6 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 7.0e-199 | 702.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene52042 | 0.837709 | 4.43E-57 | -1.69E-46 |
MS.gene051438 | MS.gene52042 | 0.81719 | 3.75E-52 | -1.69E-46 |
MS.gene051838 | MS.gene52042 | 0.823032 | 1.72E-53 | -1.69E-46 |
MS.gene052421 | MS.gene52042 | 0.819616 | 1.06E-52 | -1.69E-46 |
MS.gene052501 | MS.gene52042 | 0.803341 | 3.65E-49 | -1.69E-46 |
MS.gene052503 | MS.gene52042 | 0.801783 | 7.65E-49 | -1.69E-46 |
MS.gene053480 | MS.gene52042 | 0.814252 | 1.69E-51 | -1.69E-46 |
MS.gene053632 | MS.gene52042 | 0.80856 | 2.92E-50 | -1.69E-46 |
MS.gene053912 | MS.gene52042 | 0.80748 | 4.95E-50 | -1.69E-46 |
MS.gene053916 | MS.gene52042 | 0.808475 | 3.04E-50 | -1.69E-46 |
MS.gene05505 | MS.gene52042 | 0.812287 | 4.57E-51 | -1.69E-46 |
MS.gene055539 | MS.gene52042 | 0.807989 | 3.86E-50 | -1.69E-46 |
MS.gene055741 | MS.gene52042 | 0.801071 | 1.07E-48 | -1.69E-46 |
MS.gene055744 | MS.gene52042 | 0.801497 | 8.76E-49 | -1.69E-46 |
MS.gene05664 | MS.gene52042 | 0.805064 | 1.60E-49 | -1.69E-46 |
MS.gene057356 | MS.gene52042 | -0.808198 | 3.48E-50 | -1.69E-46 |
MS.gene057823 | MS.gene52042 | 0.811307 | 7.47E-51 | -1.69E-46 |
MS.gene058838 | MS.gene52042 | 0.805607 | 1.23E-49 | -1.69E-46 |
MS.gene059455 | MS.gene52042 | 0.812753 | 3.62E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52042.t1 | MTR_3g011510 | 98.361 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 0.0 | 738 |
MS.gene52042.t1 | MTR_3g011510 | 98.361 | 366 | 6 | 0 | 1 | 366 | 14 | 379 | 0.0 | 737 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52042.t1 | AT3G54360 | 66.393 | 366 | 107 | 2 | 5 | 354 | 31 | 396 | 1.96e-175 | 494 |
MS.gene52042.t1 | AT3G54360 | 66.393 | 366 | 107 | 2 | 5 | 354 | 31 | 396 | 1.96e-175 | 494 |
Find 76 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCATGTATATTGCGCTTTA+AGG | 0.157277 | 3.3:-7138423 | MS.gene52042:CDS |
TTCAACTTGTTCTTGTTTAT+CGG | 0.174396 | 3.3:+7134972 | None:intergenic |
AACATCACGGCGAACATTTA+AGG | 0.189458 | 3.3:+7136532 | None:intergenic |
TCCGTTTCGCTTAATAAAAT+TGG | 0.209504 | 3.3:-7136611 | MS.gene52042:CDS |
GTTCTTGTTTATCGGCCTTT+TGG | 0.296831 | 3.3:+7134980 | None:intergenic |
TTTGGAAAGAGGTTCTTTCT+TGG | 0.311270 | 3.3:-7138231 | MS.gene52042:CDS |
GATTGGTCCTCTTAGTTGTA+TGG | 0.347050 | 3.3:-7138597 | MS.gene52042:CDS |
ACATAGGTTCAGTCTTGATT+TGG | 0.359386 | 3.3:+7137905 | None:intergenic |
AGGTTCTTTCTTGGTGCAAC+AGG | 0.360238 | 3.3:-7138222 | MS.gene52042:CDS |
TCAAGAAGCCATAGACTTGC+TGG | 0.365900 | 3.3:-7135312 | MS.gene52042:CDS |
CATATACGAGGATGTGTCTT+TGG | 0.370038 | 3.3:-7138249 | MS.gene52042:CDS |
TTTAAGGACTGTCCGTTATG+TGG | 0.380399 | 3.3:-7138407 | MS.gene52042:CDS |
TTAGAAACATTACTGTCATC+TGG | 0.393316 | 3.3:+7138743 | None:intergenic |
CAATTCAAATGTTTCATCTC+AGG | 0.394732 | 3.3:-7136501 | MS.gene52042:intron |
TTCACAACTTGGAGCAGTCT+TGG | 0.399825 | 3.3:-7137829 | MS.gene52042:CDS |
AAAGTTGCCAAAGGATGATA+TGG | 0.402202 | 3.3:-7136763 | MS.gene52042:CDS |
AAGAGATTCCAGCAAGTCTA+TGG | 0.406417 | 3.3:+7135304 | None:intergenic |
AGAACAAGGCACACATTTGC+TGG | 0.423636 | 3.3:+7138550 | None:intergenic |
GGTGATCTTAAATATTATGA+TGG | 0.426058 | 3.3:-7136590 | MS.gene52042:CDS |
TTAAGGACTGTCCGTTATGT+GGG | 0.440149 | 3.3:-7138406 | MS.gene52042:CDS |
TGGGTATGCTTGGTGACTGC+TGG | 0.442245 | 3.3:-7137809 | MS.gene52042:intron |
ATAACCTCCATATCATCCTT+TGG | 0.459438 | 3.3:+7136756 | None:intergenic |
GAGCCGGATGCTGATCTTCA+AGG | 0.462414 | 3.3:-7138365 | MS.gene52042:CDS |
TCACAACTTGGAGCAGTCTT+GGG | 0.474641 | 3.3:-7137828 | MS.gene52042:CDS |
GTAGTTGATCGCTTTATTGA+AGG | 0.475161 | 3.3:-7138341 | MS.gene52042:CDS |
GTGATCTTAAATATTATGAT+GGG | 0.479498 | 3.3:-7136589 | MS.gene52042:CDS |
AACATTACTGTCATCTGGAC+GGG | 0.479601 | 3.3:+7138748 | None:intergenic |
AGTACGACCTTGCAGCTTGA+AGG | 0.480052 | 3.3:+7136564 | None:intergenic |
AGCCAGTGGACTTGAGCAAC+GGG | 0.481590 | 3.3:-7135267 | MS.gene52042:intron |
GTCTCACCAAAGTGTCCGTT+GGG | 0.487973 | 3.3:-7138641 | MS.gene52042:CDS |
ACTTGCAAAAGTAGCGGATG+TGG | 0.490800 | 3.3:-7135375 | MS.gene52042:CDS |
TCATATCCCAACGGACACTT+TGG | 0.491316 | 3.3:+7138635 | None:intergenic |
TCATGTAGAGCATGAAAGTA+AGG | 0.493199 | 3.3:-7138693 | MS.gene52042:CDS |
GAGGATGTGTCTTTGGAAAG+AGG | 0.495437 | 3.3:-7138242 | MS.gene52042:CDS |
TACCCGTTGCTCAAGTCCAC+TGG | 0.497823 | 3.3:+7135265 | None:intergenic |
AAGGTCATGCCAGGATCAAA+AGG | 0.498126 | 3.3:-7138322 | MS.gene52042:CDS |
AGACTTCCTAAGAAGCCAAA+AGG | 0.500285 | 3.3:-7134995 | MS.gene52042:CDS |
TCAGAGTTATGTTCACAACT+TGG | 0.500296 | 3.3:-7137840 | MS.gene52042:CDS |
CAAGTTGAACAAACAATATG+AGG | 0.503148 | 3.3:-7134958 | None:intergenic |
TCTTAGTTGTATGGTATGCC+AGG | 0.506853 | 3.3:-7138588 | MS.gene52042:CDS |
GGAGCAGTCTTGGGTATGCT+TGG | 0.510369 | 3.3:-7137819 | MS.gene52042:CDS |
TGAAAGTAAGGTGAAGAAAG+AGG | 0.514258 | 3.3:-7138681 | MS.gene52042:CDS |
GCGGATGTGGACAAAAGTCT+AGG | 0.516734 | 3.3:-7135362 | MS.gene52042:CDS |
CACTTTCTAAATTCTGAGCA+CGG | 0.525130 | 3.3:+7137928 | None:intergenic |
CGGATGTGGACAAAAGTCTA+GGG | 0.527420 | 3.3:-7135361 | MS.gene52042:CDS |
ACACCTTGAAGATCAGCATC+CGG | 0.549423 | 3.3:+7138362 | None:intergenic |
AACTGCTATCACCCATTGCT+CGG | 0.561570 | 3.3:+7136826 | None:intergenic |
TGTCTCACCAAAGTGTCCGT+TGG | 0.567664 | 3.3:-7138642 | MS.gene52042:CDS |
TGGCATACCATACAACTAAG+AGG | 0.568439 | 3.3:+7138590 | None:intergenic |
GACACATCCTCGTATATGAC+AGG | 0.574160 | 3.3:+7138254 | None:intergenic |
AGGTCTGTTAATTTAGACAA+TGG | 0.578810 | 3.3:-7138302 | MS.gene52042:CDS |
CTTGGTGCAACAGGCCATGA+GGG | 0.579935 | 3.3:-7138213 | MS.gene52042:intron |
ATTTCTGTCAAAGTTGCCAA+AGG | 0.579969 | 3.3:-7136772 | MS.gene52042:CDS |
GCTTTATTGAAGGTCATGCC+AGG | 0.582251 | 3.3:-7138331 | MS.gene52042:CDS |
TTGCAGAAAACGTGAGAACA+AGG | 0.583502 | 3.3:+7138536 | None:intergenic |
CGTTTCACTTGCAAAAGTAG+CGG | 0.585062 | 3.3:-7135381 | MS.gene52042:CDS |
AAGCCAGTGGACTTGAGCAA+CGG | 0.586144 | 3.3:-7135268 | MS.gene52042:CDS |
TCAATATCAGCCCCACATAA+CGG | 0.586338 | 3.3:+7138395 | None:intergenic |
TAAGGACTGTCCGTTATGTG+GGG | 0.607937 | 3.3:-7138405 | MS.gene52042:CDS |
TGGTGTCGAATAGAAGTGCC+TGG | 0.612439 | 3.3:+7138570 | None:intergenic |
ATGGGGACCTTCAAGCTGCA+AGG | 0.614405 | 3.3:-7136571 | MS.gene52042:CDS |
TTCTTGAAATCCATCACTAG+CGG | 0.615101 | 3.3:+7135328 | None:intergenic |
AAACATTACTGTCATCTGGA+CGG | 0.618781 | 3.3:+7138747 | None:intergenic |
TCTTGGTGCAACAGGCCATG+AGG | 0.620045 | 3.3:-7138214 | MS.gene52042:CDS |
TGATATTGAGAAGATCGAGC+CGG | 0.626322 | 3.3:-7138381 | MS.gene52042:CDS |
AATTGTTCTTGACAACATCA+CGG | 0.633322 | 3.3:+7136519 | None:intergenic |
GTTGCCAAAGGATGATATGG+AGG | 0.634024 | 3.3:-7136760 | MS.gene52042:intron |
AGACAATGGCGAAGAAGCAG+CGG | 0.639990 | 3.3:-7138288 | MS.gene52042:CDS |
TGATCTTAAATATTATGATG+GGG | 0.641979 | 3.3:-7136588 | MS.gene52042:CDS |
AATTAAAGGACATACCCTCA+TGG | 0.644309 | 3.3:+7138199 | None:intergenic |
GTCTGTGAGTCATATCCCAA+CGG | 0.646935 | 3.3:+7138626 | None:intergenic |
TGCGAACGTCTTCTGCACAT+AGG | 0.663682 | 3.3:+7137889 | None:intergenic |
ACATTACTGTCATCTGGACG+GGG | 0.667906 | 3.3:+7138749 | None:intergenic |
GGATGTGGACAAAAGTCTAG+GGG | 0.700647 | 3.3:-7135360 | MS.gene52042:CDS |
TAATAAGCCTGTCATATACG+AGG | 0.704408 | 3.3:-7138261 | MS.gene52042:CDS |
ACATTGAAATCTGAAGCCAG+TGG | 0.739359 | 3.3:-7135281 | MS.gene52042:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTTAGTATTAATTGA+TGG | - | chr3.3:7138539-7138558 | MS.gene52042:CDS | 10.0% |
!! | ATTATAGATATAGATAAAAA+TGG | + | chr3.3:7136497-7136516 | None:intergenic | 10.0% |
!! | AGATATAATTCAAATATAAG+TGG | + | chr3.3:7137278-7137297 | None:intergenic | 15.0% |
!! | TTAGAATAAGCATTAATTAA+AGG | + | chr3.3:7135557-7135576 | None:intergenic | 15.0% |
!! | TTGAATTATATCTAATTGTA+AGG | - | chr3.3:7137285-7137304 | MS.gene52042:intron | 15.0% |
!!! | AAGCAAATTTTATTTTCAAA+CGG | + | chr3.3:7137823-7137842 | None:intergenic | 15.0% |
!!! | AATAAACTGAAAACATTTTT+TGG | + | chr3.3:7137412-7137431 | None:intergenic | 15.0% |
!!! | ATATGTTTTTATCATTTTCA+TGG | + | chr3.3:7137919-7137938 | None:intergenic | 15.0% |
!! | ATAAATTCGAGAAATAAACA+TGG | + | chr3.3:7135243-7135262 | None:intergenic | 20.0% |
!! | GTGATCTTAAATATTATGAT+GGG | - | chr3.3:7137150-7137169 | MS.gene52042:intron | 20.0% |
!! | TAAATTCGAGAAATAAACAT+GGG | + | chr3.3:7135242-7135261 | None:intergenic | 20.0% |
!! | TATTATAGAAAGAGAAAAGA+AGG | - | chr3.3:7137936-7137955 | MS.gene52042:CDS | 20.0% |
!! | TGATCTTAAATATTATGATG+GGG | - | chr3.3:7137151-7137170 | MS.gene52042:intron | 20.0% |
!! | TTCGTTGTTTATATCAATTT+AGG | - | chr3.3:7138322-7138341 | MS.gene52042:CDS | 20.0% |
!! | TTGATATAAACAACGAAAAA+AGG | + | chr3.3:7138272-7138291 | None:intergenic | 20.0% |
!!! | AAATAAAATTTGCTTTGACA+AGG | - | chr3.3:7137828-7137847 | MS.gene52042:CDS | 20.0% |
!!! | TTCAAATGAAATTTAAAGCA+AGG | + | chr3.3:7137318-7137337 | None:intergenic | 20.0% |
!!! | TTTTTCGTTGTTTATATCAA+TGG | - | chr3.3:7138272-7138291 | MS.gene52042:CDS | 20.0% |
! | AAACTAGCAAAAACTAATTC+CGG | + | chr3.3:7136570-7136589 | None:intergenic | 25.0% |
! | AAAGATTCAATTAACCTAAG+TGG | + | chr3.3:7138179-7138198 | None:intergenic | 25.0% |
! | AAATGTTATTATCAAGTGGT+CGG | + | chr3.3:7135763-7135782 | None:intergenic | 25.0% |
! | AATGTTTAGATTAGAATCAG+TGG | - | chr3.3:7136382-7136401 | MS.gene52042:intron | 25.0% |
! | AATTAACCTAAGTGGTTAAT+GGG | + | chr3.3:7138171-7138190 | None:intergenic | 25.0% |
! | AATTAGTTCATTATCGAAAC+AGG | - | chr3.3:7137591-7137610 | MS.gene52042:intron | 25.0% |
! | ATAAGTTGTTTATCTGGATA+TGG | - | chr3.3:7135665-7135684 | MS.gene52042:intron | 25.0% |
! | ATGAATCATAACAGACTTAA+AGG | + | chr3.3:7136712-7136731 | None:intergenic | 25.0% |
! | ATGAATCTAACTAATGTGAT+TGG | + | chr3.3:7137684-7137703 | None:intergenic | 25.0% |
! | ATTAGTTCATTATCGAAACA+GGG | - | chr3.3:7137592-7137611 | MS.gene52042:intron | 25.0% |
! | CATAATAAACCGAGATATAA+AGG | - | chr3.3:7136090-7136109 | MS.gene52042:intron | 25.0% |
! | GGTAAAATGTTATTATCAAG+TGG | + | chr3.3:7135767-7135786 | None:intergenic | 25.0% |
! | GGTGATCTTAAATATTATGA+TGG | - | chr3.3:7137149-7137168 | MS.gene52042:intron | 25.0% |
! | GTGTTATAGCATAACAAAAT+TGG | - | chr3.3:7136167-7136186 | MS.gene52042:intron | 25.0% |
! | GTTTGAATTCAAATCATCTT+TGG | - | chr3.3:7136423-7136442 | MS.gene52042:intron | 25.0% |
! | TATCCAGATAAACAACTTAT+AGG | + | chr3.3:7135665-7135684 | None:intergenic | 25.0% |
! | TTGTGAAACAATAAGAACTA+TGG | + | chr3.3:7136817-7136836 | None:intergenic | 25.0% |
!! | AAATCACATCATGAAGTATT+TGG | + | chr3.3:7137658-7137677 | None:intergenic | 25.0% |
!! | AAATGAAATTTAAAGCAAGG+CGG | + | chr3.3:7137315-7137334 | None:intergenic | 25.0% |
!! | ACCAATTTTATTAAGCGAAA+CGG | + | chr3.3:7137132-7137151 | None:intergenic | 25.0% |
!! | TAGATTCATTTCTAGACATA+AGG | - | chr3.3:7137695-7137714 | MS.gene52042:intron | 25.0% |
!! | TTCAACTTGTTCTTGTTTAT+CGG | + | chr3.3:7138770-7138789 | None:intergenic | 25.0% |
!!! | ACCATTTGTAATTCTAAAAC+AGG | - | chr3.3:7135784-7135803 | MS.gene52042:intron | 25.0% |
!!! | ATTTTAACAAAAGGACATAC+TGG | + | chr3.3:7134969-7134988 | None:intergenic | 25.0% |
!!! | CCTAAAGCATTAGTTTTTTA+GGG | - | chr3.3:7136618-7136637 | MS.gene52042:CDS | 25.0% |
!!! | CTACAGCTTTTTATTTTACT+AGG | - | chr3.3:7135720-7135739 | MS.gene52042:intron | 25.0% |
!!! | TCCTAAAGCATTAGTTTTTT+AGG | - | chr3.3:7136617-7136636 | MS.gene52042:CDS | 25.0% |
AACAATAAGAACTATGGTTC+AGG | + | chr3.3:7136811-7136830 | None:intergenic | 30.0% | |
AATTGTTCTTGACAACATCA+CGG | + | chr3.3:7137223-7137242 | None:intergenic | 30.0% | |
ACATTGTTTAGACATATGGT+TGG | - | chr3.3:7135990-7136009 | MS.gene52042:intron | 30.0% | |
AGGTCTGTTAATTTAGACAA+TGG | - | chr3.3:7135437-7135456 | MS.gene52042:intron | 30.0% | |
CAACCTATAAGTTGTTTATC+TGG | - | chr3.3:7135659-7135678 | MS.gene52042:intron | 30.0% | |
CAAGAAAGATAAAAGCAAAC+GGG | - | chr3.3:7136359-7136378 | MS.gene52042:intron | 30.0% | |
CAATTAACCTAAGTGGTTAA+TGG | + | chr3.3:7138172-7138191 | None:intergenic | 30.0% | |
CAATTCAAATGTTTCATCTC+AGG | - | chr3.3:7137238-7137257 | MS.gene52042:intron | 30.0% | |
CCAAGAAAGATAAAAGCAAA+CGG | - | chr3.3:7136358-7136377 | MS.gene52042:intron | 30.0% | |
CCCTAAAAAACTAATGCTTT+AGG | + | chr3.3:7136621-7136640 | None:intergenic | 30.0% | |
CTCTTACATCTTATGGTATA+AGG | - | chr3.3:7137557-7137576 | MS.gene52042:intron | 30.0% | |
GGCAAGATAAATTGTACTTA+TGG | + | chr3.3:7138150-7138169 | None:intergenic | 30.0% | |
TATAGAAAGAGAAAAGAAGG+CGG | - | chr3.3:7137939-7137958 | MS.gene52042:intron | 30.0% | |
TCAAATCATCTTTGGTATTG+AGG | - | chr3.3:7136431-7136450 | MS.gene52042:intron | 30.0% | |
TCAGACATTGTTTAGACATA+TGG | - | chr3.3:7135986-7136005 | MS.gene52042:intron | 30.0% | |
TCCGTTTCGCTTAATAAAAT+TGG | - | chr3.3:7137128-7137147 | MS.gene52042:intron | 30.0% | |
TGATAAGCTCTTACATCTTA+TGG | - | chr3.3:7137550-7137569 | MS.gene52042:intron | 30.0% | |
TGCACTAGTGAAAACTAAAA+TGG | - | chr3.3:7138013-7138032 | MS.gene52042:intron | 30.0% | |
TTAGAAACATTACTGTCATC+TGG | + | chr3.3:7134999-7135018 | None:intergenic | 30.0% | |
! | AAAATTTGCTTTGACAAGGT+TGG | - | chr3.3:7137832-7137851 | MS.gene52042:CDS | 30.0% |
! | AAATTTGCTTTGACAAGGTT+GGG | - | chr3.3:7137833-7137852 | MS.gene52042:CDS | 30.0% |
! | AATGAAATTTAAAGCAAGGC+GGG | + | chr3.3:7137314-7137333 | None:intergenic | 30.0% |
! | ATTCATTTCTAGACATAAGG+AGG | - | chr3.3:7137698-7137717 | MS.gene52042:intron | 30.0% |
! | CAAATCATCTTTGGTATTGA+GGG | - | chr3.3:7136432-7136451 | MS.gene52042:intron | 30.0% |
! | TCTATTTTCTTAAGCCATAC+TGG | + | chr3.3:7137447-7137466 | None:intergenic | 30.0% |
! | TTCATTTCTAGACATAAGGA+GGG | - | chr3.3:7137699-7137718 | MS.gene52042:intron | 30.0% |
!!! | AGCATTAGTTTTTTAGGGAT+AGG | - | chr3.3:7136623-7136642 | MS.gene52042:CDS | 30.0% |
!!! | GCCTGTTTTAGAATTACAAA+TGG | + | chr3.3:7135788-7135807 | None:intergenic | 30.0% |
AAAAGCAGTATTCGCCTTTA+TGG | - | chr3.3:7136541-7136560 | MS.gene52042:CDS | 35.0% | |
AAACATTACTGTCATCTGGA+CGG | + | chr3.3:7134995-7135014 | None:intergenic | 35.0% | |
AAAGTGTGTGTGTAATCTGT+AGG | + | chr3.3:7137109-7137128 | None:intergenic | 35.0% | |
AAAGTTGCCAAAGGATGATA+TGG | - | chr3.3:7136976-7136995 | MS.gene52042:intron | 35.0% | |
AAGCTAAAATCCACATACTG+AGG | + | chr3.3:7137618-7137637 | None:intergenic | 35.0% | |
AATTAAAGGACATACCCTCA+TGG | + | chr3.3:7135543-7135562 | None:intergenic | 35.0% | |
ACATAGGTTCAGTCTTGATT+TGG | + | chr3.3:7135837-7135856 | None:intergenic | 35.0% | |
AGATTAGAATCAGTGGAGAT+TGG | - | chr3.3:7136389-7136408 | MS.gene52042:intron | 35.0% | |
AGTTAAGAAGCAGACTGATA+AGG | - | chr3.3:7137753-7137772 | MS.gene52042:intron | 35.0% | |
ATAACCTCCATATCATCCTT+TGG | + | chr3.3:7136986-7137005 | None:intergenic | 35.0% | |
ATAGAAAGAGAAAAGAAGGC+GGG | - | chr3.3:7137940-7137959 | MS.gene52042:intron | 35.0% | |
ATGGTTCAGGATGAATGAAA+CGG | + | chr3.3:7136798-7136817 | None:intergenic | 35.0% | |
ATTTCTGTCAAAGTTGCCAA+AGG | - | chr3.3:7136967-7136986 | MS.gene52042:intron | 35.0% | |
CAATTTCCATCCTTCTATAG+CGG | - | chr3.3:7138710-7138729 | MS.gene52042:CDS | 35.0% | |
CACTTTCTAAATTCTGAGCA+CGG | + | chr3.3:7135814-7135833 | None:intergenic | 35.0% | |
CGTTGTTTATATCAATGGCA+TGG | - | chr3.3:7138277-7138296 | MS.gene52042:CDS | 35.0% | |
TAAACCGAGATATAAAGGCA+TGG | - | chr3.3:7136095-7136114 | MS.gene52042:intron | 35.0% | |
TAACCAGTGTTGTCAAATAG+CGG | - | chr3.3:7136139-7136158 | MS.gene52042:intron | 35.0% | |
TAATAAGCCTGTCATATACG+AGG | - | chr3.3:7135478-7135497 | MS.gene52042:intron | 35.0% | |
TCAAATGTTTCATCTCAGGT+TGG | - | chr3.3:7137242-7137261 | MS.gene52042:intron | 35.0% | |
TCAGAGTTATGTTCACAACT+TGG | - | chr3.3:7135899-7135918 | MS.gene52042:intron | 35.0% | |
TCATGTAGAGCATGAAAGTA+AGG | - | chr3.3:7135046-7135065 | MS.gene52042:intron | 35.0% | |
TGAAAGTAAGGTGAAGAAAG+AGG | - | chr3.3:7135058-7135077 | MS.gene52042:intron | 35.0% | |
TTACAAGAACTCACGTAATG+AGG | + | chr3.3:7138078-7138097 | None:intergenic | 35.0% | |
TTCTTGAAATCCATCACTAG+CGG | + | chr3.3:7138414-7138433 | None:intergenic | 35.0% | |
TTGACCATGCCTTTATATCT+CGG | + | chr3.3:7136102-7136121 | None:intergenic | 35.0% | |
TTTCCATTAGCTATCCAGTA+TGG | - | chr3.3:7137430-7137449 | MS.gene52042:intron | 35.0% | |
TTTGGAAAGAGGTTCTTTCT+TGG | - | chr3.3:7135508-7135527 | MS.gene52042:intron | 35.0% | |
! | ATAACTTTTCCACTGATCAG+AGG | - | chr3.3:7138040-7138059 | MS.gene52042:intron | 35.0% |
! | ATTAACAGACCTTTTGATCC+TGG | + | chr3.3:7135429-7135448 | None:intergenic | 35.0% |
! | GTAGTTGATCGCTTTATTGA+AGG | - | chr3.3:7135398-7135417 | MS.gene52042:CDS | 35.0% |
! | GTTTGTATTTTCTCCTTCAC+CGG | - | chr3.3:7136671-7136690 | MS.gene52042:intron | 35.0% |
! | TATTTGAAAGTGCGAGAGAA+CGG | + | chr3.3:7136595-7136614 | None:intergenic | 35.0% |
! | TCATTTCTAGACATAAGGAG+GGG | - | chr3.3:7137700-7137719 | MS.gene52042:intron | 35.0% |
! | TTTGTATTTTCTCCTTCACC+GGG | - | chr3.3:7136672-7136691 | MS.gene52042:intron | 35.0% |
! | TTTTCTGCAAGTATGTATCG+CGG | - | chr3.3:7135216-7135235 | MS.gene52042:intron | 35.0% |
!! | CATTAGAACCTTGCTTTTCT+TGG | - | chr3.3:7137008-7137027 | MS.gene52042:intron | 35.0% |
!! | CCGTTTGCTTTTATCTTTCT+TGG | + | chr3.3:7136361-7136380 | None:intergenic | 35.0% |
!!! | GACTCACAGACTTTTAAGAT+TGG | - | chr3.3:7135125-7135144 | MS.gene52042:intron | 35.0% |
AAACTGATAGCCGCTATAGA+AGG | + | chr3.3:7138723-7138742 | None:intergenic | 40.0% | |
AACATCACGGCGAACATTTA+AGG | + | chr3.3:7137210-7137229 | None:intergenic | 40.0% | |
AACATTACTGTCATCTGGAC+GGG | + | chr3.3:7134994-7135013 | None:intergenic | 40.0% | |
AAGAGATTCCAGCAAGTCTA+TGG | + | chr3.3:7138438-7138457 | None:intergenic | 40.0% | |
AAGCCATACTGGATAGCTAA+TGG | + | chr3.3:7137436-7137455 | None:intergenic | 40.0% | |
ACTAATTCCGGACACCATAA+AGG | + | chr3.3:7136558-7136577 | None:intergenic | 40.0% | |
AGACTTCCTAAGAAGCCAAA+AGG | - | chr3.3:7138744-7138763 | MS.gene52042:CDS | 40.0% | |
ATAAGGAGGGGATAGAATGA+TGG | - | chr3.3:7137712-7137731 | MS.gene52042:intron | 40.0% | |
ATCTTGCCCATTAACCACTT+AGG | - | chr3.3:7138162-7138181 | MS.gene52042:intron | 40.0% | |
ATGCTGTCAAATAGCAGCTA+TGG | - | chr3.3:7136231-7136250 | MS.gene52042:intron | 40.0% | |
CATATACGAGGATGTGTCTT+TGG | - | chr3.3:7135490-7135509 | MS.gene52042:intron | 40.0% | |
CCAAATGACATGTTCTAACG+TGG | + | chr3.3:7138220-7138239 | None:intergenic | 40.0% | |
CCACGTTAGAACATGTCATT+TGG | - | chr3.3:7138217-7138236 | MS.gene52042:CDS | 40.0% | |
CGCAGTCAGATAGAAAAAGT+CGG | - | chr3.3:7135869-7135888 | MS.gene52042:intron | 40.0% | |
CGTTTCACTTGCAAAAGTAG+CGG | - | chr3.3:7138358-7138377 | MS.gene52042:CDS | 40.0% | |
CTAAGAGTAGTGTATCTGTG+AGG | - | chr3.3:7136042-7136061 | MS.gene52042:intron | 40.0% | |
CTCACGTAATGAGGAAACTA+CGG | + | chr3.3:7138069-7138088 | None:intergenic | 40.0% | |
GATGAAAAATCCGCTAGTGA+TGG | - | chr3.3:7138401-7138420 | MS.gene52042:CDS | 40.0% | |
GGCATGTATATTGCGCTTTA+AGG | - | chr3.3:7135316-7135335 | MS.gene52042:CDS | 40.0% | |
GTCCATGTCAGTATTATGCT+GGG | + | chr3.3:7137801-7137820 | None:intergenic | 40.0% | |
GTTCTCTCGCACTTTCAAAT+AGG | - | chr3.3:7136594-7136613 | MS.gene52042:CDS | 40.0% | |
GTTCTTGCAAACAGTCACAT+AGG | + | chr3.3:7137365-7137384 | None:intergenic | 40.0% | |
TAAGAAGCAGACTGATAAGG+AGG | - | chr3.3:7137756-7137775 | MS.gene52042:intron | 40.0% | |
TAGTGTATCTGTGAGGACTT+AGG | - | chr3.3:7136049-7136068 | MS.gene52042:intron | 40.0% | |
TCAATATCAGCCCCACATAA+CGG | + | chr3.3:7135347-7135366 | None:intergenic | 40.0% | |
TCACGTAATGAGGAAACTAC+GGG | + | chr3.3:7138068-7138087 | None:intergenic | 40.0% | |
TCTGGATATGGCATTGTTGA+TGG | - | chr3.3:7135677-7135696 | MS.gene52042:intron | 40.0% | |
TCTTAGTTGTATGGTATGCC+AGG | - | chr3.3:7135151-7135170 | MS.gene52042:intron | 40.0% | |
TGATATTGAGAAGATCGAGC+CGG | - | chr3.3:7135358-7135377 | MS.gene52042:CDS | 40.0% | |
TGGCATACCATACAACTAAG+AGG | + | chr3.3:7135152-7135171 | None:intergenic | 40.0% | |
TGGTTCAGGATGAATGAAAC+GGG | + | chr3.3:7136797-7136816 | None:intergenic | 40.0% | |
TTAAGGACTGTCCGTTATGT+GGG | - | chr3.3:7135333-7135352 | MS.gene52042:CDS | 40.0% | |
TTATGTCTGTCTGATGTGCA+GGG | - | chr3.3:7135295-7135314 | MS.gene52042:CDS | 40.0% | |
TTGCAGAAAACGTGAGAACA+AGG | + | chr3.3:7135206-7135225 | None:intergenic | 40.0% | |
TTTAAGGACTGTCCGTTATG+TGG | - | chr3.3:7135332-7135351 | MS.gene52042:CDS | 40.0% | |
TTTATGTCTGTCTGATGTGC+AGG | - | chr3.3:7135294-7135313 | MS.gene52042:CDS | 40.0% | |
! | ACATTGAAATCTGAAGCCAG+TGG | - | chr3.3:7138458-7138477 | MS.gene52042:intron | 40.0% |
! | GAACATGTCATTTGGACAGA+AGG | - | chr3.3:7138225-7138244 | MS.gene52042:CDS | 40.0% |
! | GATTGGTCCTCTTAGTTGTA+TGG | - | chr3.3:7135142-7135161 | MS.gene52042:intron | 40.0% |
! | TAAAGGCATGGTCAAAATGC+TGG | - | chr3.3:7136107-7136126 | MS.gene52042:intron | 40.0% |
! | TTGTATTTTCTCCTTCACCG+GGG | - | chr3.3:7136673-7136692 | MS.gene52042:intron | 40.0% |
!! | GGACGGGGAATTTTAACAAA+AGG | + | chr3.3:7134978-7134997 | None:intergenic | 40.0% |
!! | GTTCTTGTTTATCGGCCTTT+TGG | + | chr3.3:7138762-7138781 | None:intergenic | 40.0% |
!!! | CGCTACTTTTGCAAGTGAAA+CGG | + | chr3.3:7138360-7138379 | None:intergenic | 40.0% |
!!! | GTATTGAGGGTGTTGAGTTT+TGG | - | chr3.3:7136445-7136464 | MS.gene52042:intron | 40.0% |
AACTGCTATCACCCATTGCT+CGG | + | chr3.3:7136916-7136935 | None:intergenic | 45.0% | |
AAGGACCATTGTTCAAACCC+CGG | + | chr3.3:7136693-7136712 | None:intergenic | 45.0% | |
AAGGTCATGCCAGGATCAAA+AGG | - | chr3.3:7135417-7135436 | MS.gene52042:intron | 45.0% | |
ACACCTTGAAGATCAGCATC+CGG | + | chr3.3:7135380-7135399 | None:intergenic | 45.0% | |
ACATTACTGTCATCTGGACG+GGG | + | chr3.3:7134993-7135012 | None:intergenic | 45.0% | |
AGAACAAGGCACACATTTGC+TGG | + | chr3.3:7135192-7135211 | None:intergenic | 45.0% | |
ATGAAACGGGGAAGAGCAAA+AGG | + | chr3.3:7136784-7136803 | None:intergenic | 45.0% | |
CACTAGAGCCAAGAAAAGCA+AGG | + | chr3.3:7137019-7137038 | None:intergenic | 45.0% | |
CGGATGTGGACAAAAGTCTA+GGG | - | chr3.3:7138378-7138397 | MS.gene52042:CDS | 45.0% | |
CTGTAGCTTCAGCAGATCAA+GGG | + | chr3.3:7135706-7135725 | None:intergenic | 45.0% | |
CTGTCAAATAGCAGCTATGG+TGG | - | chr3.3:7136234-7136253 | MS.gene52042:intron | 45.0% | |
GACACATCCTCGTATATGAC+AGG | + | chr3.3:7135488-7135507 | None:intergenic | 45.0% | |
GGATGTGGACAAAAGTCTAG+GGG | - | chr3.3:7138379-7138398 | MS.gene52042:CDS | 45.0% | |
GGTCCATGTCAGTATTATGC+TGG | + | chr3.3:7137802-7137821 | None:intergenic | 45.0% | |
GGTTCAGGATGAATGAAACG+GGG | + | chr3.3:7136796-7136815 | None:intergenic | 45.0% | |
GTATTCGCCTTTATGGTGTC+CGG | - | chr3.3:7136548-7136567 | MS.gene52042:CDS | 45.0% | |
GTCAGTATTATGCTGGGACT+GGG | + | chr3.3:7137795-7137814 | None:intergenic | 45.0% | |
GTCCCAGCATAATACTGACA+TGG | - | chr3.3:7137796-7137815 | MS.gene52042:intron | 45.0% | |
GTCTGTGAGTCATATCCCAA+CGG | + | chr3.3:7135116-7135135 | None:intergenic | 45.0% | |
GTGTTGTCAATAGCTGATCG+TGG | + | chr3.3:7136306-7136325 | None:intergenic | 45.0% | |
GTTGCCAAAGGATGATATGG+AGG | - | chr3.3:7136979-7136998 | MS.gene52042:intron | 45.0% | |
TAAGGACTGTCCGTTATGTG+GGG | - | chr3.3:7135334-7135353 | MS.gene52042:CDS | 45.0% | |
TAGCCGCTATTTGACAACAC+TGG | + | chr3.3:7136145-7136164 | None:intergenic | 45.0% | |
TCAAGAAGCCATAGACTTGC+TGG | - | chr3.3:7138427-7138446 | MS.gene52042:intron | 45.0% | |
TCACAACTTGGAGCAGTCTT+GGG | - | chr3.3:7135911-7135930 | MS.gene52042:intron | 45.0% | |
TCAGTATTATGCTGGGACTG+GGG | + | chr3.3:7137794-7137813 | None:intergenic | 45.0% | |
TCATATCCCAACGGACACTT+TGG | + | chr3.3:7135107-7135126 | None:intergenic | 45.0% | |
TCTAACGTGGAAATGTGCGT+GGG | + | chr3.3:7138207-7138226 | None:intergenic | 45.0% | |
TGATAGCCGCTATAGAAGGA+TGG | + | chr3.3:7138719-7138738 | None:intergenic | 45.0% | |
TGTCAGTATTATGCTGGGAC+TGG | + | chr3.3:7137796-7137815 | None:intergenic | 45.0% | |
TTCACAACTTGGAGCAGTCT+TGG | - | chr3.3:7135910-7135929 | MS.gene52042:intron | 45.0% | |
TTCTAACGTGGAAATGTGCG+TGG | + | chr3.3:7138208-7138227 | None:intergenic | 45.0% | |
! | AATTTTCTGCAGCCGAGCAA+TGG | - | chr3.3:7136901-7136920 | MS.gene52042:intron | 45.0% |
! | AGGTTCTTTCTTGGTGCAAC+AGG | - | chr3.3:7135517-7135536 | MS.gene52042:intron | 45.0% |
! | ATTTTCTGCAGCCGAGCAAT+GGG | - | chr3.3:7136902-7136921 | MS.gene52042:intron | 45.0% |
! | GAGGATGTGTCTTTGGAAAG+AGG | - | chr3.3:7135497-7135516 | MS.gene52042:intron | 45.0% |
! | GCTTTATTGAAGGTCATGCC+AGG | - | chr3.3:7135408-7135427 | MS.gene52042:intron | 45.0% |
! | GGTTGGTGCTTAGAGAAAGA+TGG | - | chr3.3:7136007-7136026 | MS.gene52042:intron | 45.0% |
! | TGTCATTTGGACAGAAGGCA+TGG | - | chr3.3:7138230-7138249 | MS.gene52042:CDS | 45.0% |
!! | ACTTGCAAAAGTAGCGGATG+TGG | - | chr3.3:7138364-7138383 | MS.gene52042:CDS | 45.0% |
!! | AGAATGATGGCTTGGTGACT+GGG | - | chr3.3:7137725-7137744 | MS.gene52042:intron | 45.0% |
!! | TAGAATGATGGCTTGGTGAC+TGG | - | chr3.3:7137724-7137743 | MS.gene52042:intron | 45.0% |
!!! | TATCGGCCTTTTGGCTTCTT+AGG | + | chr3.3:7138753-7138772 | None:intergenic | 45.0% |
ACGGGGAAGAGCAAAAGGTA+TGG | + | chr3.3:7136779-7136798 | None:intergenic | 50.0% | |
AGACAATGGCGAAGAAGCAG+CGG | - | chr3.3:7135451-7135470 | MS.gene52042:intron | 50.0% | |
AGCAGACTGATAAGGAGGTG+AGG | - | chr3.3:7137761-7137780 | MS.gene52042:intron | 50.0% | |
AGTACGACCTTGCAGCTTGA+AGG | + | chr3.3:7137178-7137197 | None:intergenic | 50.0% | |
CATTGTTCAAACCCCGGTGA+AGG | + | chr3.3:7136687-7136706 | None:intergenic | 50.0% | |
CTTCACCGGGGTTTGAACAA+TGG | - | chr3.3:7136685-7136704 | MS.gene52042:intron | 50.0% | |
GAGGGGATAGAATGATGGCT+TGG | - | chr3.3:7137717-7137736 | MS.gene52042:intron | 50.0% | |
GCAGACTGATAAGGAGGTGA+GGG | - | chr3.3:7137762-7137781 | MS.gene52042:intron | 50.0% | |
GCGGATGTGGACAAAAGTCT+AGG | - | chr3.3:7138377-7138396 | MS.gene52042:CDS | 50.0% | |
GCTGTAGCTTCAGCAGATCA+AGG | + | chr3.3:7135707-7135726 | None:intergenic | 50.0% | |
GGTGACTGCTGGTAAGTTGT+TGG | - | chr3.3:7135941-7135960 | MS.gene52042:intron | 50.0% | |
TGCGAACGTCTTCTGCACAT+AGG | + | chr3.3:7135853-7135872 | None:intergenic | 50.0% | |
! | AAGCCAGTGGACTTGAGCAA+CGG | - | chr3.3:7138471-7138490 | MS.gene52042:intron | 50.0% |
! | GTCTCACCAAAGTGTCCGTT+GGG | - | chr3.3:7135098-7135117 | MS.gene52042:intron | 50.0% |
! | TGTCTCACCAAAGTGTCCGT+TGG | - | chr3.3:7135097-7135116 | MS.gene52042:intron | 50.0% |
!! | GAATGATGGCTTGGTGACTG+GGG | - | chr3.3:7137726-7137745 | MS.gene52042:intron | 50.0% |
!! | TGGTGTCGAATAGAAGTGCC+TGG | + | chr3.3:7135172-7135191 | None:intergenic | 50.0% |
AACGTGGAAATGTGCGTGGG+TGG | + | chr3.3:7138204-7138223 | None:intergenic | 55.0% | |
ATGGGGACCTTCAAGCTGCA+AGG | - | chr3.3:7137168-7137187 | MS.gene52042:intron | 55.0% | |
CGAAACAGGGCCTCAGTATG+TGG | - | chr3.3:7137605-7137624 | MS.gene52042:intron | 55.0% | |
GACAAGGTTGGGCAGCTTCT+TGG | - | chr3.3:7137844-7137863 | MS.gene52042:CDS | 55.0% | |
GAGCCGGATGCTGATCTTCA+AGG | - | chr3.3:7135374-7135393 | MS.gene52042:CDS | 55.0% | |
GGAGCAGTCTTGGGTATGCT+TGG | - | chr3.3:7135920-7135939 | MS.gene52042:intron | 55.0% | |
TACCCGTTGCTCAAGTCCAC+TGG | + | chr3.3:7138477-7138496 | None:intergenic | 55.0% | |
! | AGCCAGTGGACTTGAGCAAC+GGG | - | chr3.3:7138472-7138491 | MS.gene52042:intron | 55.0% |
! | CTTGGTGCAACAGGCCATGA+GGG | - | chr3.3:7135526-7135545 | MS.gene52042:intron | 55.0% |
! | TCTTGGTGCAACAGGCCATG+AGG | - | chr3.3:7135525-7135544 | MS.gene52042:intron | 55.0% |
! | TGGGTATGCTTGGTGACTGC+TGG | - | chr3.3:7135930-7135949 | MS.gene52042:intron | 55.0% |
CTACGGGTGCCTCTGATCAG+TGG | + | chr3.3:7138052-7138071 | None:intergenic | 60.0% | |
!! | GATGGCTTGGTGACTGGGGT+GGG | - | chr3.3:7137730-7137749 | MS.gene52042:intron | 60.0% |
!! | TGATGGCTTGGTGACTGGGG+TGG | - | chr3.3:7137729-7137748 | MS.gene52042:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 7134960 | 7138801 | 7134960 | ID=MS.gene52042 |
chr3.3 | mRNA | 7134960 | 7138801 | 7134960 | ID=MS.gene52042.t1;Parent=MS.gene52042 |
chr3.3 | exon | 7138536 | 7138801 | 7138536 | ID=MS.gene52042.t1.exon1;Parent=MS.gene52042.t1 |
chr3.3 | CDS | 7138536 | 7138801 | 7138536 | ID=cds.MS.gene52042.t1;Parent=MS.gene52042.t1 |
chr3.3 | exon | 7138214 | 7138445 | 7138214 | ID=MS.gene52042.t1.exon2;Parent=MS.gene52042.t1 |
chr3.3 | CDS | 7138214 | 7138445 | 7138214 | ID=cds.MS.gene52042.t1;Parent=MS.gene52042.t1 |
chr3.3 | exon | 7137810 | 7137955 | 7137810 | ID=MS.gene52042.t1.exon3;Parent=MS.gene52042.t1 |
chr3.3 | CDS | 7137810 | 7137955 | 7137810 | ID=cds.MS.gene52042.t1;Parent=MS.gene52042.t1 |
chr3.3 | exon | 7136761 | 7136848 | 7136761 | ID=MS.gene52042.t1.exon4;Parent=MS.gene52042.t1 |
chr3.3 | CDS | 7136761 | 7136848 | 7136761 | ID=cds.MS.gene52042.t1;Parent=MS.gene52042.t1 |
chr3.3 | exon | 7136502 | 7136648 | 7136502 | ID=MS.gene52042.t1.exon5;Parent=MS.gene52042.t1 |
chr3.3 | CDS | 7136502 | 7136648 | 7136502 | ID=cds.MS.gene52042.t1;Parent=MS.gene52042.t1 |
chr3.3 | exon | 7135268 | 7135417 | 7135268 | ID=MS.gene52042.t1.exon6;Parent=MS.gene52042.t1 |
chr3.3 | CDS | 7135268 | 7135417 | 7135268 | ID=cds.MS.gene52042.t1;Parent=MS.gene52042.t1 |
chr3.3 | exon | 7134960 | 7135031 | 7134960 | ID=MS.gene52042.t1.exon7;Parent=MS.gene52042.t1 |
chr3.3 | CDS | 7134960 | 7135031 | 7134960 | ID=cds.MS.gene52042.t1;Parent=MS.gene52042.t1 |
Gene Sequence |
Protein sequence |