Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52172.t1 | XP_003623840.1 | 96.2 | 560 | 21 | 0 | 1 | 560 | 1 | 560 | 2.40E-233 | 818.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52172.t1 | A2Q5C9 | 96.2 | 560 | 21 | 0 | 1 | 560 | 1 | 560 | 1.7e-233 | 818.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52172 | MS.gene32213 | PPI |
| MS.gene33842 | MS.gene52172 | PPI |
| MS.gene41659 | MS.gene52172 | PPI |
| MS.gene052565 | MS.gene52172 | PPI |
| MS.gene52172 | MS.gene06253 | PPI |
| MS.gene055531 | MS.gene52172 | PPI |
| MS.gene52172 | MS.gene052564 | PPI |
| MS.gene52172 | MS.gene28664 | PPI |
| MS.gene013180 | MS.gene52172 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52172.t1 | MTR_7g076220 | 96.607 | 560 | 19 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1088 |
| MS.gene52172.t1 | MTR_8g032570 | 76.950 | 564 | 123 | 3 | 1 | 560 | 24 | 584 | 0.0 | 872 |
| MS.gene52172.t1 | MTR_8g032570 | 76.950 | 564 | 123 | 3 | 1 | 560 | 1 | 561 | 0.0 | 872 |
| MS.gene52172.t1 | MTR_3g098730 | 33.766 | 539 | 329 | 11 | 34 | 559 | 30 | 553 | 1.59e-77 | 255 |
| MS.gene52172.t1 | MTR_4g091320 | 30.228 | 569 | 344 | 15 | 17 | 554 | 22 | 568 | 2.72e-62 | 215 |
| MS.gene52172.t1 | MTR_5g092900 | 44.167 | 120 | 32 | 3 | 371 | 490 | 32 | 116 | 3.64e-17 | 78.2 |
| MS.gene52172.t1 | MTR_1g018180 | 27.106 | 273 | 185 | 7 | 156 | 420 | 61 | 327 | 8.00e-14 | 73.6 |
| MS.gene52172.t1 | MTR_4g007850 | 34.667 | 150 | 95 | 3 | 408 | 554 | 364 | 513 | 1.15e-13 | 73.9 |
| MS.gene52172.t1 | MTR_7g078330 | 27.574 | 272 | 189 | 6 | 167 | 433 | 378 | 646 | 1.32e-13 | 73.9 |
| MS.gene52172.t1 | MTR_1g069845 | 29.796 | 245 | 161 | 7 | 237 | 477 | 363 | 600 | 1.49e-13 | 73.9 |
| MS.gene52172.t1 | MTR_1g069845 | 29.796 | 245 | 161 | 7 | 237 | 477 | 484 | 721 | 1.78e-13 | 73.9 |
| MS.gene52172.t1 | MTR_1g069845 | 29.796 | 245 | 161 | 7 | 237 | 477 | 480 | 717 | 1.84e-13 | 73.9 |
| MS.gene52172.t1 | MTR_3g466220 | 26.198 | 313 | 184 | 6 | 156 | 465 | 553 | 821 | 3.80e-13 | 72.8 |
| MS.gene52172.t1 | MTR_3g466220 | 26.198 | 313 | 184 | 6 | 156 | 465 | 532 | 800 | 4.74e-13 | 72.4 |
| MS.gene52172.t1 | MTR_7g097020 | 25.526 | 333 | 205 | 6 | 137 | 468 | 464 | 754 | 4.72e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52172.t1 | AT2G45720 | 66.667 | 549 | 173 | 2 | 12 | 560 | 15 | 553 | 0.0 | 751 |
| MS.gene52172.t1 | AT2G45720 | 66.667 | 549 | 173 | 2 | 12 | 560 | 15 | 553 | 0.0 | 751 |
| MS.gene52172.t1 | AT2G45720 | 66.667 | 549 | 173 | 2 | 12 | 560 | 15 | 553 | 0.0 | 751 |
| MS.gene52172.t1 | AT2G45720 | 66.667 | 549 | 173 | 2 | 12 | 560 | 15 | 553 | 0.0 | 751 |
| MS.gene52172.t1 | AT2G45720 | 66.667 | 549 | 173 | 2 | 12 | 560 | 15 | 553 | 0.0 | 751 |
| MS.gene52172.t1 | AT1G01830 | 63.718 | 554 | 193 | 4 | 8 | 559 | 27 | 574 | 0.0 | 676 |
| MS.gene52172.t1 | AT1G01830 | 63.718 | 554 | 193 | 4 | 8 | 559 | 27 | 574 | 0.0 | 676 |
| MS.gene52172.t1 | AT1G01830 | 63.718 | 554 | 193 | 4 | 8 | 559 | 27 | 574 | 0.0 | 676 |
| MS.gene52172.t1 | AT5G50900 | 37.158 | 549 | 325 | 8 | 22 | 559 | 15 | 554 | 2.97e-103 | 322 |
| MS.gene52172.t1 | AT1G61350 | 29.927 | 548 | 341 | 14 | 35 | 554 | 32 | 564 | 1.20e-63 | 219 |
| MS.gene52172.t1 | AT2G05810 | 33.148 | 540 | 337 | 14 | 34 | 557 | 41 | 572 | 4.09e-50 | 182 |
| MS.gene52172.t1 | AT2G05810 | 33.148 | 540 | 337 | 14 | 34 | 557 | 41 | 572 | 4.09e-50 | 182 |
| MS.gene52172.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 546 | 818 | 2.30e-17 | 86.3 |
| MS.gene52172.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 543 | 815 | 2.38e-17 | 86.3 |
| MS.gene52172.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 543 | 815 | 2.38e-17 | 86.3 |
| MS.gene52172.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 354 | 626 | 4.31e-17 | 85.1 |
| MS.gene52172.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 354 | 626 | 4.31e-17 | 85.1 |
| MS.gene52172.t1 | AT3G54790 | 29.856 | 278 | 178 | 8 | 206 | 479 | 454 | 718 | 7.17e-16 | 81.6 |
| MS.gene52172.t1 | AT3G54790 | 29.856 | 278 | 178 | 8 | 206 | 479 | 490 | 754 | 1.17e-15 | 80.9 |
| MS.gene52172.t1 | AT3G54790 | 29.856 | 278 | 178 | 8 | 206 | 479 | 490 | 754 | 1.17e-15 | 80.9 |
| MS.gene52172.t1 | AT3G46510 | 27.586 | 290 | 196 | 6 | 154 | 435 | 352 | 635 | 3.50e-13 | 72.8 |
| MS.gene52172.t1 | AT2G28830 | 27.304 | 293 | 197 | 7 | 153 | 435 | 282 | 568 | 2.00e-12 | 70.5 |
| MS.gene52172.t1 | AT5G58680 | 25.279 | 269 | 161 | 2 | 233 | 501 | 99 | 327 | 5.04e-11 | 65.1 |
| MS.gene52172.t1 | AT1G71020 | 26.374 | 273 | 192 | 5 | 156 | 423 | 195 | 463 | 6.64e-11 | 65.1 |
| MS.gene52172.t1 | AT1G71020 | 26.374 | 273 | 192 | 5 | 156 | 423 | 343 | 611 | 8.74e-11 | 65.1 |
Find 98 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGAGGTGAGACAGATTT+TGG | 0.191099 | 7.4:+29277705 | MS.gene52172:CDS |
| GATAAAGCAAAAGAGGTTAA+AGG | 0.250953 | 7.4:+29276866 | MS.gene52172:CDS |
| TGATAAAAGTGTGCCTAATT+TGG | 0.258642 | 7.4:+29278224 | MS.gene52172:CDS |
| ACATTCTGCTGCATATTCTT+TGG | 0.259181 | 7.4:-29277788 | None:intergenic |
| TCAAGTAACTGAACCAAATT+AGG | 0.283449 | 7.4:-29278237 | None:intergenic |
| GGATGCATTAATCGGGAAAA+TGG | 0.303126 | 7.4:+29277099 | MS.gene52172:CDS |
| GATAAGTTTGATAACATTGA+TGG | 0.317226 | 7.4:-29276935 | None:intergenic |
| ATGATCTCATATGGTGCTAT+TGG | 0.322689 | 7.4:+29278342 | MS.gene52172:CDS |
| AGTCGCAGCGTTAAGGAATT+TGG | 0.341238 | 7.4:+29277921 | MS.gene52172:CDS |
| TTTGCTTTATCAAGAGCAAT+AGG | 0.341641 | 7.4:-29276854 | None:intergenic |
| CTTATAAGACTTGTTGAATC+AGG | 0.347476 | 7.4:+29277505 | MS.gene52172:CDS |
| TTAACTTGTGGAATGTTGTT+AGG | 0.364935 | 7.4:+29277763 | MS.gene52172:CDS |
| TTAAATGCGTCTTCCGTGTC+AGG | 0.372955 | 7.4:+29277187 | MS.gene52172:CDS |
| TTGGTTCACGTGTTGAAATC+CGG | 0.379042 | 7.4:+29277994 | MS.gene52172:CDS |
| TATATGCTCGCTAGCCGAAT+CGG | 0.388263 | 7.4:+29277438 | MS.gene52172:CDS |
| AGAAGATGAAAAGAATGTTT+TGG | 0.395867 | 7.4:+29277330 | MS.gene52172:CDS |
| GCTAGGATTACTTCCTCGTT+TGG | 0.400683 | 7.4:+29277975 | MS.gene52172:CDS |
| AGTGATCTGGATGCATTAAT+CGG | 0.402558 | 7.4:+29277091 | MS.gene52172:CDS |
| ACATGGTGGCGTTTGTCCTT+TGG | 0.402833 | 7.4:+29277609 | MS.gene52172:CDS |
| AAATATGCAGTTACATGCCT+TGG | 0.403305 | 7.4:+29278285 | MS.gene52172:CDS |
| TTGTATCGGAAGGCGGTGTT+AGG | 0.403469 | 7.4:+29277854 | MS.gene52172:CDS |
| TTGGTTGAGCTTTGTCGAAC+CGG | 0.410474 | 7.4:+29277628 | MS.gene52172:CDS |
| TCTTTGCAAGGAGCAATTGC+AGG | 0.411441 | 7.4:+29276985 | MS.gene52172:CDS |
| TGCTCTTGATAAAGCAAAAG+AGG | 0.413222 | 7.4:+29276859 | MS.gene52172:CDS |
| CAGGAGCAACATTGCTGCAC+TGG | 0.435703 | 7.4:+29277363 | MS.gene52172:CDS |
| ACTTCAGATGCAGAGTGATC+TGG | 0.435997 | 7.4:+29277078 | MS.gene52172:CDS |
| ATATACTTTCAACAGAAGAT+TGG | 0.437674 | 7.4:+29276807 | MS.gene52172:CDS |
| TACATGAGAGATTGGAAAGA+GGG | 0.441315 | 7.4:+29278412 | MS.gene52172:CDS |
| CAGTAGCCCACAACAACATA+AGG | 0.443924 | 7.4:+29277230 | MS.gene52172:CDS |
| ATATGCTCGCTAGCCGAATC+GGG | 0.444293 | 7.4:+29277439 | MS.gene52172:CDS |
| AATCTGCAGTCGCAGCGTTA+AGG | 0.448445 | 7.4:+29277914 | MS.gene52172:CDS |
| AGAAGCGAAGCACAAAGCTT+TGG | 0.451007 | 7.4:+29277285 | MS.gene52172:CDS |
| GTGTTGAAATCCGGCTCCCC+AGG | 0.465743 | 7.4:+29278003 | MS.gene52172:CDS |
| GTAACTCCCTTATGTTGTTG+TGG | 0.467574 | 7.4:-29277237 | None:intergenic |
| TAACTCCCTTATGTTGTTGT+GGG | 0.470411 | 7.4:-29277236 | None:intergenic |
| TTGATCAGAACTGGTATGCT+TGG | 0.472449 | 7.4:+29277148 | MS.gene52172:CDS |
| ATGATCAATTTGTTAACTTG+TGG | 0.475541 | 7.4:+29277751 | MS.gene52172:CDS |
| CTCAAAGAATGCTCTTTGCA+AGG | 0.480769 | 7.4:+29276973 | MS.gene52172:CDS |
| CAGCGTTAAGGAATTTGGTC+AGG | 0.483288 | 7.4:+29277926 | MS.gene52172:CDS |
| GACACGGAAGACGCATTTAA+CGG | 0.483292 | 7.4:-29277184 | None:intergenic |
| GCGTTGTCGAAGTCGCTTGA+AGG | 0.483797 | 7.4:+29277007 | MS.gene52172:CDS |
| AACAAGGATAAGAGAGAAAA+CGG | 0.487702 | 7.4:+29277408 | MS.gene52172:CDS |
| ATCAAAATCATGGTGGAAGA+TGG | 0.488379 | 7.4:+29276773 | None:intergenic |
| CTTCTAAGTGACCGATCTGA+AGG | 0.491857 | 7.4:-29277267 | None:intergenic |
| AAGAAGCTAATGATCTCATA+TGG | 0.492681 | 7.4:+29278333 | MS.gene52172:CDS |
| AACCGGCGATTCTGTTTCGC+AGG | 0.502115 | 7.4:+29277645 | MS.gene52172:CDS |
| GCCAAAATCTGTCTCACCTC+AGG | 0.503593 | 7.4:-29277706 | None:intergenic |
| ATCCTCGCAGCTACCCGATT+CGG | 0.503854 | 7.4:-29277452 | None:intergenic |
| TTTGAAGAAACTTACTGAGA+TGG | 0.503997 | 7.4:+29278368 | MS.gene52172:CDS |
| GATTTGAATTTACGAGATTG+TGG | 0.508625 | 7.4:+29277121 | MS.gene52172:CDS |
| AACAAGGAGAGGAATGCAAC+CGG | 0.520728 | 7.4:-29278100 | None:intergenic |
| ACTGCAGATTCTTGAGGAAG+TGG | 0.523180 | 7.4:-29277901 | None:intergenic |
| GATTCAACAAGTCTTATAAG+AGG | 0.524542 | 7.4:-29277502 | None:intergenic |
| AATCGGGTAGCTGCGAGGAT+TGG | 0.524824 | 7.4:+29277455 | MS.gene52172:CDS |
| AGAGCATTCTTTGAGAAACA+TGG | 0.525223 | 7.4:-29276965 | None:intergenic |
| TAATAGAAGAGAAGTTAAGA+AGG | 0.531726 | 7.4:+29278200 | MS.gene52172:CDS |
| AGCTTTGGACAGTGTTGTTG+AGG | 0.533166 | 7.4:+29277300 | MS.gene52172:CDS |
| TTACATGAGAGATTGGAAAG+AGG | 0.535319 | 7.4:+29278411 | MS.gene52172:CDS |
| GTGACAGCTTTGATTTCGCT+AGG | 0.536770 | 7.4:+29277958 | MS.gene52172:CDS |
| GTTACAAAGGTTATCAATGT+CGG | 0.540691 | 7.4:+29277561 | MS.gene52172:CDS |
| GTGATCTGGATGCATTAATC+GGG | 0.542255 | 7.4:+29277092 | MS.gene52172:CDS |
| AGATTGGTTGTTACATGCAA+AGG | 0.544625 | 7.4:+29276823 | MS.gene52172:CDS |
| AAGTGCTGTAGGTAAAGAAA+AGG | 0.552308 | 7.4:+29277528 | MS.gene52172:CDS |
| TCTCCTTGTTAAGATGCTTG+AGG | 0.557290 | 7.4:+29278113 | MS.gene52172:CDS |
| TTTCTGTCGAGCTGCTAACT+CGG | 0.563543 | 7.4:-29278056 | None:intergenic |
| GTTGAATCAGGAAGTGCTGT+AGG | 0.569401 | 7.4:+29277517 | MS.gene52172:CDS |
| TCGCGTGAAATCGTCGGACA+TGG | 0.579937 | 7.4:+29277592 | MS.gene52172:CDS |
| GTTAAGGAATTTGGTCAGGT+CGG | 0.582359 | 7.4:+29277930 | MS.gene52172:CDS |
| GAGGATTGGCTAGTTTCTGA+AGG | 0.584950 | 7.4:+29277469 | MS.gene52172:CDS |
| AGTAGCCCACAACAACATAA+GGG | 0.590757 | 7.4:+29277231 | MS.gene52172:CDS |
| CATTCTTTGAGAAACATGGA+TGG | 0.592010 | 7.4:-29276961 | None:intergenic |
| TCAACAAGTCTTATAAGAGG+TGG | 0.596638 | 7.4:-29277499 | None:intergenic |
| TAACCTTTGTAACGATATTG+CGG | 0.602955 | 7.4:-29277551 | None:intergenic |
| TGGCTCAAGAAGGGATTGTG+AGG | 0.604275 | 7.4:+29277725 | MS.gene52172:CDS |
| GACTCTCATTGCTTGCAGTG+AGG | 0.605442 | 7.4:-29277819 | None:intergenic |
| AGCCTGCGAAACAGAATCGC+CGG | 0.607149 | 7.4:-29277647 | None:intergenic |
| TCAAGCATCTTAACAAGGAG+AGG | 0.608112 | 7.4:-29278111 | None:intergenic |
| AGTCTCTTAGCATATCTTGA+CGG | 0.608560 | 7.4:+29277877 | MS.gene52172:CDS |
| GGCTCAAGAAGGGATTGTGA+GGG | 0.611614 | 7.4:+29277726 | MS.gene52172:CDS |
| AGGCCGCAATATCGTTACAA+AGG | 0.614068 | 7.4:+29277548 | MS.gene52172:CDS |
| GAATATTTCAGCTGTTCCTG+AGG | 0.614185 | 7.4:+29277690 | MS.gene52172:CDS |
| TTCTGTCGCAGAACCTGACA+CGG | 0.614968 | 7.4:-29277200 | None:intergenic |
| GCTGCGACTGCAGATTCTTG+AGG | 0.624141 | 7.4:-29277907 | None:intergenic |
| TTACTTGCGCGCCTTCAGAT+CGG | 0.624802 | 7.4:+29277256 | MS.gene52172:CDS |
| TCGGCAGATTGCTGACGCAG+CGG | 0.628367 | 7.4:-29278037 | None:intergenic |
| TTCAACACGTGAACCAAACG+AGG | 0.632931 | 7.4:-29277988 | None:intergenic |
| GAAACATCGCGTGAAATCGT+CGG | 0.634754 | 7.4:+29277586 | MS.gene52172:CDS |
| TACTTGAAGAAATCAATCCA+AGG | 0.635931 | 7.4:-29278302 | None:intergenic |
| TAGCCTCAAGCATCTTAACA+AGG | 0.636140 | 7.4:-29278116 | None:intergenic |
| TGTGTGAAGGAGAAGTATGA+AGG | 0.638552 | 7.4:+29277052 | MS.gene52172:CDS |
| AAAAGTGTTGTATCGGAAGG+CGG | 0.639832 | 7.4:+29277847 | MS.gene52172:CDS |
| CAGAACTGGTATGCTTGGCG+AGG | 0.641538 | 7.4:+29277153 | MS.gene52172:CDS |
| ATCAGCTGAATTGTGTGTGA+AGG | 0.643275 | 7.4:+29277039 | MS.gene52172:CDS |
| CTTACTGAGATGGATACTCC+AGG | 0.657141 | 7.4:+29278378 | MS.gene52172:CDS |
| AGCCGAATCGGGTAGCTGCG+AGG | 0.659711 | 7.4:+29277450 | MS.gene52172:CDS |
| CGTGAAATCGTCGGACATGG+TGG | 0.660194 | 7.4:+29277595 | MS.gene52172:CDS |
| GTTCGACAAAGCTCAACCAA+AGG | 0.661790 | 7.4:-29277625 | None:intergenic |
| TACTTACAGCAACATCAACA+AGG | 0.680317 | 7.4:+29277392 | MS.gene52172:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTGCATTGTTTTG+AGG | - | chr7.4:29278270-29278289 | None:intergenic | 20.0% |
| !!! | TCTAAAAAAAAGTGTTGTAT+CGG | + | chr7.4:29277840-29277859 | MS.gene52172:CDS | 20.0% |
| ! | ACAGAAATGAAAAAATTGGT+CGG | + | chr7.4:29278072-29278091 | MS.gene52172:CDS | 25.0% |
| ! | ATATACTTTCAACAGAAGAT+TGG | + | chr7.4:29276807-29276826 | MS.gene52172:CDS | 25.0% |
| ! | TAAAAAGTTACATGAGAGAT+TGG | + | chr7.4:29278404-29278423 | MS.gene52172:CDS | 25.0% |
| ! | TAATAGAAGAGAAGTTAAGA+AGG | + | chr7.4:29278200-29278219 | MS.gene52172:CDS | 25.0% |
| !! | AGAAGATGAAAAGAATGTTT+TGG | + | chr7.4:29277330-29277349 | MS.gene52172:CDS | 25.0% |
| !! | GATAAGTTTGATAACATTGA+TGG | - | chr7.4:29276938-29276957 | None:intergenic | 25.0% |
| !! | GGGAAATTAAGAATTTTGTT+TGG | + | chr7.4:29278432-29278451 | MS.gene52172:CDS | 25.0% |
| !!! | ATGATCAATTTGTTAACTTG+TGG | + | chr7.4:29277751-29277770 | MS.gene52172:CDS | 25.0% |
| AACAAGGATAAGAGAGAAAA+CGG | + | chr7.4:29277408-29277427 | MS.gene52172:CDS | 30.0% | |
| AAGAAGCTAATGATCTCATA+TGG | + | chr7.4:29278333-29278352 | MS.gene52172:CDS | 30.0% | |
| CTCGACAGAAATGAAAAAAT+TGG | + | chr7.4:29278068-29278087 | MS.gene52172:CDS | 30.0% | |
| GATAAAGCAAAAGAGGTTAA+AGG | + | chr7.4:29276866-29276885 | MS.gene52172:CDS | 30.0% | |
| GATTTGAATTTACGAGATTG+TGG | + | chr7.4:29277121-29277140 | MS.gene52172:CDS | 30.0% | |
| GTTACAAAGGTTATCAATGT+CGG | + | chr7.4:29277561-29277580 | MS.gene52172:CDS | 30.0% | |
| TAACCTTTGTAACGATATTG+CGG | - | chr7.4:29277554-29277573 | None:intergenic | 30.0% | |
| TACTTGAAGAAATCAATCCA+AGG | - | chr7.4:29278305-29278324 | None:intergenic | 30.0% | |
| TCAAGTAACTGAACCAAATT+AGG | - | chr7.4:29278240-29278259 | None:intergenic | 30.0% | |
| TTTGAAGAAACTTACTGAGA+TGG | + | chr7.4:29278368-29278387 | MS.gene52172:CDS | 30.0% | |
| TTTGCTTTATCAAGAGCAAT+AGG | - | chr7.4:29276857-29276876 | None:intergenic | 30.0% | |
| ! | ATGATCATTTTCCATCTAGT+AGG | - | chr7.4:29276896-29276915 | None:intergenic | 30.0% |
| ! | GATTCAACAAGTCTTATAAG+AGG | - | chr7.4:29277505-29277524 | None:intergenic | 30.0% |
| ! | TGATAAAAGTGTGCCTAATT+TGG | + | chr7.4:29278224-29278243 | MS.gene52172:CDS | 30.0% |
| ! | TTAAAGGTTTTCCTACTAGA+TGG | + | chr7.4:29276882-29276901 | MS.gene52172:CDS | 30.0% |
| !! | AAAAAAAGTGTTGTATCGGA+AGG | + | chr7.4:29277844-29277863 | MS.gene52172:CDS | 30.0% |
| !! | CTTATAAGACTTGTTGAATC+AGG | + | chr7.4:29277505-29277524 | MS.gene52172:CDS | 30.0% |
| !! | TTAACTTGTGGAATGTTGTT+AGG | + | chr7.4:29277763-29277782 | MS.gene52172:CDS | 30.0% |
| AAATATGCAGTTACATGCCT+TGG | + | chr7.4:29278285-29278304 | MS.gene52172:CDS | 35.0% | |
| ACATTCTGCTGCATATTCTT+TGG | - | chr7.4:29277791-29277810 | None:intergenic | 35.0% | |
| AGTCTCTTAGCATATCTTGA+CGG | + | chr7.4:29277877-29277896 | MS.gene52172:CDS | 35.0% | |
| AGTGATCTGGATGCATTAAT+CGG | + | chr7.4:29277091-29277110 | MS.gene52172:CDS | 35.0% | |
| TAACTCCCTTATGTTGTTGT+GGG | - | chr7.4:29277239-29277258 | None:intergenic | 35.0% | |
| TACATGAGAGATTGGAAAGA+GGG | + | chr7.4:29278412-29278431 | MS.gene52172:CDS | 35.0% | |
| TACTTACAGCAACATCAACA+AGG | + | chr7.4:29277392-29277411 | MS.gene52172:CDS | 35.0% | |
| TGCTCTTGATAAAGCAAAAG+AGG | + | chr7.4:29276859-29276878 | MS.gene52172:CDS | 35.0% | |
| TTACATGAGAGATTGGAAAG+AGG | + | chr7.4:29278411-29278430 | MS.gene52172:CDS | 35.0% | |
| ! | AAGTGCTGTAGGTAAAGAAA+AGG | + | chr7.4:29277528-29277547 | MS.gene52172:CDS | 35.0% |
| ! | AGAGCATTCTTTGAGAAACA+TGG | - | chr7.4:29276968-29276987 | None:intergenic | 35.0% |
| ! | AGATTGGTTGTTACATGCAA+AGG | + | chr7.4:29276823-29276842 | MS.gene52172:CDS | 35.0% |
| ! | CATTCTTTGAGAAACATGGA+TGG | - | chr7.4:29276964-29276983 | None:intergenic | 35.0% |
| ! | TCAACAAGTCTTATAAGAGG+TGG | - | chr7.4:29277502-29277521 | None:intergenic | 35.0% |
| !! | ATGATCTCATATGGTGCTAT+TGG | + | chr7.4:29278342-29278361 | MS.gene52172:CDS | 35.0% |
| !! | TCATGTAACTTTTTAGCACC+TGG | - | chr7.4:29278399-29278418 | None:intergenic | 35.0% |
| !!! | ATGTTTTGGCTGTTTTTAGC+AGG | + | chr7.4:29277344-29277363 | MS.gene52172:CDS | 35.0% |
| !!! | TTTGCATTGTTTTGAGGACT+AGG | - | chr7.4:29278264-29278283 | None:intergenic | 35.0% |
| AGTAGCCCACAACAACATAA+GGG | + | chr7.4:29277231-29277250 | MS.gene52172:CDS | 40.0% | |
| ATCAGCTGAATTGTGTGTGA+AGG | + | chr7.4:29277039-29277058 | MS.gene52172:CDS | 40.0% | |
| CTCAAAGAATGCTCTTTGCA+AGG | + | chr7.4:29276973-29276992 | MS.gene52172:CDS | 40.0% | |
| GAATATTTCAGCTGTTCCTG+AGG | + | chr7.4:29277690-29277709 | MS.gene52172:CDS | 40.0% | |
| GGATGCATTAATCGGGAAAA+TGG | + | chr7.4:29277099-29277118 | MS.gene52172:CDS | 40.0% | |
| GTAACTCCCTTATGTTGTTG+TGG | - | chr7.4:29277240-29277259 | None:intergenic | 40.0% | |
| GTGATCTGGATGCATTAATC+GGG | + | chr7.4:29277092-29277111 | MS.gene52172:CDS | 40.0% | |
| GTTAAGGAATTTGGTCAGGT+CGG | + | chr7.4:29277930-29277949 | MS.gene52172:CDS | 40.0% | |
| TAGCCTCAAGCATCTTAACA+AGG | - | chr7.4:29278119-29278138 | None:intergenic | 40.0% | |
| TCAAGCATCTTAACAAGGAG+AGG | - | chr7.4:29278114-29278133 | None:intergenic | 40.0% | |
| TCTCCTTGTTAAGATGCTTG+AGG | + | chr7.4:29278113-29278132 | MS.gene52172:CDS | 40.0% | |
| TTGATCAGAACTGGTATGCT+TGG | + | chr7.4:29277148-29277167 | MS.gene52172:CDS | 40.0% | |
| TTGGTTCACGTGTTGAAATC+CGG | + | chr7.4:29277994-29278013 | MS.gene52172:CDS | 40.0% | |
| ! | TGTGGACTTTTGATCAGAAC+TGG | + | chr7.4:29277139-29277158 | MS.gene52172:CDS | 40.0% |
| ! | TGTGTGAAGGAGAAGTATGA+AGG | + | chr7.4:29277052-29277071 | MS.gene52172:CDS | 40.0% |
| !! | AAAAGTGTTGTATCGGAAGG+CGG | + | chr7.4:29277847-29277866 | MS.gene52172:CDS | 40.0% |
| !!! | AGACAGATTTTGGCTCAAGA+AGG | + | chr7.4:29277715-29277734 | MS.gene52172:CDS | 40.0% |
| !!! | GACAGATTTTGGCTCAAGAA+GGG | + | chr7.4:29277716-29277735 | MS.gene52172:CDS | 40.0% |
| AAAAAATTGGTCGGCGAAGC+CGG | + | chr7.4:29278081-29278100 | MS.gene52172:CDS | 45.0% | |
| AACAAGGAGAGGAATGCAAC+CGG | - | chr7.4:29278103-29278122 | None:intergenic | 45.0% | |
| ACTGCAGATTCTTGAGGAAG+TGG | - | chr7.4:29277904-29277923 | None:intergenic | 45.0% | |
| ACTTCAGATGCAGAGTGATC+TGG | + | chr7.4:29277078-29277097 | MS.gene52172:CDS | 45.0% | |
| AGAAGCGAAGCACAAAGCTT+TGG | + | chr7.4:29277285-29277304 | MS.gene52172:CDS | 45.0% | |
| AGGCCGCAATATCGTTACAA+AGG | + | chr7.4:29277548-29277567 | MS.gene52172:CDS | 45.0% | |
| AGTCGCAGCGTTAAGGAATT+TGG | + | chr7.4:29277921-29277940 | MS.gene52172:CDS | 45.0% | |
| CAGCGTTAAGGAATTTGGTC+AGG | + | chr7.4:29277926-29277945 | MS.gene52172:CDS | 45.0% | |
| CAGTAGCCCACAACAACATA+AGG | + | chr7.4:29277230-29277249 | MS.gene52172:CDS | 45.0% | |
| CTTACTGAGATGGATACTCC+AGG | + | chr7.4:29278378-29278397 | MS.gene52172:CDS | 45.0% | |
| CTTCTAAGTGACCGATCTGA+AGG | - | chr7.4:29277270-29277289 | None:intergenic | 45.0% | |
| GAAACATCGCGTGAAATCGT+CGG | + | chr7.4:29277586-29277605 | MS.gene52172:CDS | 45.0% | |
| GACACGGAAGACGCATTTAA+CGG | - | chr7.4:29277187-29277206 | None:intergenic | 45.0% | |
| GCTAGGATTACTTCCTCGTT+TGG | + | chr7.4:29277975-29277994 | MS.gene52172:CDS | 45.0% | |
| GTTCGACAAAGCTCAACCAA+AGG | - | chr7.4:29277628-29277647 | None:intergenic | 45.0% | |
| TATATGCTCGCTAGCCGAAT+CGG | + | chr7.4:29277438-29277457 | MS.gene52172:CDS | 45.0% | |
| TCTTTGCAAGGAGCAATTGC+AGG | + | chr7.4:29276985-29277004 | MS.gene52172:CDS | 45.0% | |
| TTAAATGCGTCTTCCGTGTC+AGG | + | chr7.4:29277187-29277206 | MS.gene52172:CDS | 45.0% | |
| TTCAACACGTGAACCAAACG+AGG | - | chr7.4:29277991-29278010 | None:intergenic | 45.0% | |
| TTTCTGTCGAGCTGCTAACT+CGG | - | chr7.4:29278059-29278078 | None:intergenic | 45.0% | |
| ! | GTGACAGCTTTGATTTCGCT+AGG | + | chr7.4:29277958-29277977 | MS.gene52172:CDS | 45.0% |
| ! | TCCTGAGGTGAGACAGATTT+TGG | + | chr7.4:29277705-29277724 | MS.gene52172:CDS | 45.0% |
| ! | TTGGTTGAGCTTTGTCGAAC+CGG | + | chr7.4:29277628-29277647 | MS.gene52172:CDS | 45.0% |
| !! | AGCTTTGGACAGTGTTGTTG+AGG | + | chr7.4:29277300-29277319 | MS.gene52172:CDS | 45.0% |
| !! | GAGGATTGGCTAGTTTCTGA+AGG | + | chr7.4:29277469-29277488 | MS.gene52172:CDS | 45.0% |
| !! | GTTGAATCAGGAAGTGCTGT+AGG | + | chr7.4:29277517-29277536 | MS.gene52172:CDS | 45.0% |
| AATCTGCAGTCGCAGCGTTA+AGG | + | chr7.4:29277914-29277933 | MS.gene52172:CDS | 50.0% | |
| ATATGCTCGCTAGCCGAATC+GGG | + | chr7.4:29277439-29277458 | MS.gene52172:CDS | 50.0% | |
| GACTCTCATTGCTTGCAGTG+AGG | - | chr7.4:29277822-29277841 | None:intergenic | 50.0% | |
| GCCAAAATCTGTCTCACCTC+AGG | - | chr7.4:29277709-29277728 | None:intergenic | 50.0% | |
| GGCTCAAGAAGGGATTGTGA+GGG | + | chr7.4:29277726-29277745 | MS.gene52172:CDS | 50.0% | |
| TGGCTCAAGAAGGGATTGTG+AGG | + | chr7.4:29277725-29277744 | MS.gene52172:CDS | 50.0% | |
| TTACTTGCGCGCCTTCAGAT+CGG | + | chr7.4:29277256-29277275 | MS.gene52172:CDS | 50.0% | |
| TTCTGTCGCAGAACCTGACA+CGG | - | chr7.4:29277203-29277222 | None:intergenic | 50.0% | |
| TTGTATCGGAAGGCGGTGTT+AGG | + | chr7.4:29277854-29277873 | MS.gene52172:CDS | 50.0% | |
| ! | ACATGGTGGCGTTTGTCCTT+TGG | + | chr7.4:29277609-29277628 | MS.gene52172:CDS | 50.0% |
| AACCGGCGATTCTGTTTCGC+AGG | + | chr7.4:29277645-29277664 | MS.gene52172:CDS | 55.0% | |
| AATCGGGTAGCTGCGAGGAT+TGG | + | chr7.4:29277455-29277474 | MS.gene52172:CDS | 55.0% | |
| AGCCTGCGAAACAGAATCGC+CGG | - | chr7.4:29277650-29277669 | None:intergenic | 55.0% | |
| ATCCTCGCAGCTACCCGATT+CGG | - | chr7.4:29277455-29277474 | None:intergenic | 55.0% | |
| CAGAACTGGTATGCTTGGCG+AGG | + | chr7.4:29277153-29277172 | MS.gene52172:CDS | 55.0% | |
| CAGGAGCAACATTGCTGCAC+TGG | + | chr7.4:29277363-29277382 | MS.gene52172:CDS | 55.0% | |
| CGTGAAATCGTCGGACATGG+TGG | + | chr7.4:29277595-29277614 | MS.gene52172:CDS | 55.0% | |
| GCGTTGTCGAAGTCGCTTGA+AGG | + | chr7.4:29277007-29277026 | MS.gene52172:CDS | 55.0% | |
| GCTGCGACTGCAGATTCTTG+AGG | - | chr7.4:29277910-29277929 | None:intergenic | 55.0% | |
| TCGCGTGAAATCGTCGGACA+TGG | + | chr7.4:29277592-29277611 | MS.gene52172:CDS | 55.0% | |
| ! | AGCGGCATTTTGTGCTCCTG+GGG | - | chr7.4:29278022-29278041 | None:intergenic | 55.0% |
| ! | ATTTTGTGCTCCTGGGGAGC+CGG | - | chr7.4:29278016-29278035 | None:intergenic | 55.0% |
| ! | CAGCGGCATTTTGTGCTCCT+GGG | - | chr7.4:29278023-29278042 | None:intergenic | 55.0% |
| GTGTTGAAATCCGGCTCCCC+AGG | + | chr7.4:29278003-29278022 | MS.gene52172:CDS | 60.0% | |
| TCGGCAGATTGCTGACGCAG+CGG | - | chr7.4:29278040-29278059 | None:intergenic | 60.0% | |
| ! | GCAGCGGCATTTTGTGCTCC+TGG | - | chr7.4:29278024-29278043 | None:intergenic | 60.0% |
| AGCCGAATCGGGTAGCTGCG+AGG | + | chr7.4:29277450-29277469 | MS.gene52172:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 29276782 | 29278464 | 29276782 | ID=MS.gene52172 |
| chr7.4 | mRNA | 29276782 | 29278464 | 29276782 | ID=MS.gene52172.t1;Parent=MS.gene52172 |
| chr7.4 | exon | 29276782 | 29278464 | 29276782 | ID=MS.gene52172.t1.exon1;Parent=MS.gene52172.t1 |
| chr7.4 | CDS | 29276782 | 29278464 | 29276782 | ID=cds.MS.gene52172.t1;Parent=MS.gene52172.t1 |
| Gene Sequence |
| Protein sequence |
