Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53126.t1 | XP_003613966.1 | 98.9 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 2.40E-94 | 354.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53126.t1 | Q9M015 | 48.8 | 166 | 82 | 1 | 15 | 180 | 8 | 170 | 7.5e-44 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53126.t1 | G7JWQ2 | 98.9 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.8e-94 | 354.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53126 | MS.gene95675 | PPI |
| MS.gene53126 | MS.gene33453 | PPI |
| MS.gene53126 | MS.gene069002 | PPI |
| MS.gene53126 | MS.gene99505 | PPI |
| MS.gene53126 | MS.gene052793 | PPI |
| MS.gene53126 | MS.gene071033 | PPI |
| MS.gene53126 | MS.gene33706 | PPI |
| MS.gene53126 | MS.gene93374 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53126.t1 | MTR_5g043190 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 3.73e-129 | 360 |
| MS.gene53126.t1 | MTR_4g109140 | 64.641 | 181 | 56 | 2 | 1 | 180 | 1 | 174 | 2.84e-81 | 238 |
| MS.gene53126.t1 | MTR_7g070000 | 49.444 | 180 | 81 | 2 | 1 | 180 | 1 | 170 | 5.02e-59 | 182 |
| MS.gene53126.t1 | MTR_4g014490 | 50.602 | 166 | 79 | 1 | 15 | 180 | 8 | 170 | 6.52e-59 | 182 |
| MS.gene53126.t1 | MTR_7g108775 | 37.349 | 83 | 50 | 2 | 63 | 144 | 33 | 114 | 2.22e-13 | 64.7 |
| MS.gene53126.t1 | MTR_7g108775 | 37.349 | 83 | 50 | 2 | 63 | 144 | 33 | 114 | 2.99e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53126.t1 | AT2G03350 | 74.576 | 177 | 43 | 1 | 1 | 177 | 1 | 175 | 2.90e-95 | 274 |
| MS.gene53126.t1 | AT5G37070 | 49.444 | 180 | 81 | 2 | 1 | 180 | 1 | 170 | 3.98e-61 | 187 |
| MS.gene53126.t1 | AT3G08890 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 1.11e-59 | 184 |
| MS.gene53126.t1 | AT3G08890 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 1.11e-59 | 184 |
| MS.gene53126.t1 | AT5G01610 | 48.795 | 166 | 82 | 1 | 15 | 180 | 8 | 170 | 4.67e-58 | 179 |
| MS.gene53126.t1 | AT5G01610 | 48.795 | 166 | 82 | 1 | 15 | 180 | 8 | 170 | 4.67e-58 | 179 |
| MS.gene53126.t1 | AT5G16380 | 28.125 | 128 | 88 | 3 | 49 | 174 | 19 | 144 | 3.83e-13 | 65.1 |
| MS.gene53126.t1 | AT4G02370 | 28.713 | 101 | 68 | 2 | 64 | 163 | 35 | 132 | 2.39e-12 | 62.4 |
| MS.gene53126.t1 | AT1G02816 | 25.000 | 112 | 78 | 3 | 64 | 172 | 35 | 143 | 3.30e-12 | 62.0 |
Find 42 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACAAATCTGATAAGATT+TGG | 0.265998 | 5.4:-32336710 | MS.gene53126:CDS |
| TGAAAACAAAAGTTCTTGTA+TGG | 0.338172 | 5.4:-32336761 | MS.gene53126:CDS |
| GGGAAAGCTTTCAGCAATAG+AGG | 0.361806 | 5.4:-32336787 | MS.gene53126:CDS |
| TTACAAATCTGATAAGATTT+GGG | 0.365699 | 5.4:-32336709 | MS.gene53126:CDS |
| GAGTCAAAGGTGTACTTACT+AGG | 0.380524 | 5.4:-32336809 | MS.gene53126:CDS |
| AAAAGTTCTTGTATGGGTTA+AGG | 0.386610 | 5.4:-32336754 | MS.gene53126:CDS |
| AGATTGGACTTGGTGATTCA+TGG | 0.388734 | 5.4:-32339783 | MS.gene53126:CDS |
| TAGTTTGTTGAAAACCCATT+TGG | 0.430521 | 5.4:+32337782 | None:intergenic |
| TGATACTCTAATAGCATCTC+GGG | 0.437935 | 5.4:+32336638 | None:intergenic |
| AAAGTGGCAAGTTTGAAGAT+TGG | 0.439753 | 5.4:-32339799 | MS.gene53126:CDS |
| TTGAACTCTCTGAGGAGATC+TGG | 0.445414 | 5.4:+32336966 | None:intergenic |
| GGTGTATCGTAAGCATCCTT+TGG | 0.469228 | 5.4:+32336660 | None:intergenic |
| TGCATGTGAGGTCAGCTTCA+AGG | 0.469233 | 5.4:-32336859 | MS.gene53126:CDS |
| CTGTTGAAGAGAAGGCCAAA+TGG | 0.472733 | 5.4:-32337797 | MS.gene53126:CDS |
| GAGAGTTCAATTTACCGCTC+GGG | 0.472924 | 5.4:-32336953 | MS.gene53126:CDS |
| CTGATACTCTAATAGCATCT+CGG | 0.477645 | 5.4:+32336637 | None:intergenic |
| TGTTGAAGAGAAGGCCAAAT+GGG | 0.480692 | 5.4:-32337796 | MS.gene53126:CDS |
| CTCAAGCACTGTTGAAGAGA+AGG | 0.492131 | 5.4:-32337805 | MS.gene53126:CDS |
| AGTAAGTACACCTTTGACTC+GGG | 0.494877 | 5.4:+32336812 | None:intergenic |
| GTAGACAATCAGCTTACCCT+TGG | 0.505031 | 5.4:+32336890 | None:intergenic |
| CCCACAGGTAAGCCACAGAA+AGG | 0.506420 | 5.4:-32336993 | MS.gene53126:intron |
| AGAGAGTTCAATTTACCGCT+CGG | 0.507282 | 5.4:-32336954 | MS.gene53126:CDS |
| GATAAGATTTGGGTTACTGC+TGG | 0.516200 | 5.4:-32336699 | MS.gene53126:CDS |
| AGTCAAAGGTGTACTTACTA+GGG | 0.519994 | 5.4:-32336808 | MS.gene53126:CDS |
| GAAAACAAAAGTTCTTGTAT+GGG | 0.524444 | 5.4:-32336760 | MS.gene53126:CDS |
| GCAAGTTTGAAGATTGGACT+TGG | 0.547752 | 5.4:-32339793 | MS.gene53126:CDS |
| CGATATGCAACCCGAGTCAA+AGG | 0.562733 | 5.4:-32336822 | MS.gene53126:CDS |
| GGAGAAAGCTCTCACTAAAG+TGG | 0.571492 | 5.4:-32339815 | MS.gene53126:CDS |
| TAGTAAGTACACCTTTGACT+CGG | 0.573895 | 5.4:+32336811 | None:intergenic |
| CTACTTACCATCTGCATGTG+AGG | 0.574237 | 5.4:-32336871 | MS.gene53126:CDS |
| CTGCTGGTGTTAAGAAGTCA+AGG | 0.578489 | 5.4:-32336683 | MS.gene53126:CDS |
| GTGACAAGTGTGACAGTAGA+GGG | 0.581696 | 5.4:-32336732 | MS.gene53126:CDS |
| AGATCTGGTAAACCTTTCTG+TGG | 0.597603 | 5.4:+32336981 | None:intergenic |
| GGAAAGCTTTCAGCAATAGA+GGG | 0.600700 | 5.4:-32336786 | MS.gene53126:CDS |
| AAGCTGACCTCACATGCAGA+TGG | 0.613619 | 5.4:+32336864 | None:intergenic |
| GGTGACAAGTGTGACAGTAG+AGG | 0.615714 | 5.4:-32336733 | MS.gene53126:CDS |
| TATGAGTTTGACGAAACCAA+GGG | 0.622312 | 5.4:-32336906 | MS.gene53126:CDS |
| TTATGAGTTTGACGAAACCA+AGG | 0.622560 | 5.4:-32336907 | MS.gene53126:CDS |
| TGTTAAGAAGTCAAGGCCAA+AGG | 0.647193 | 5.4:-32336676 | MS.gene53126:CDS |
| GTCAAAGGTGTACTTACTAG+GGG | 0.651960 | 5.4:-32336807 | MS.gene53126:CDS |
| GCGGTAAATTGAACTCTCTG+AGG | 0.669943 | 5.4:+32336958 | None:intergenic |
| GATACTCTAATAGCATCTCG+GGG | 0.705257 | 5.4:+32336639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGGGTATATTAAAAAAA+TGG | - | chr5.4:32337556-32337575 | MS.gene53126:intron | 15.0% |
| !! | AAATATATAGGGAAAAATAG+AGG | + | chr5.4:32338200-32338219 | None:intergenic | 20.0% |
| !! | AATAAAAACAGAGATATTAG+AGG | + | chr5.4:32338159-32338178 | None:intergenic | 20.0% |
| !! | AATATATAGGGAAAAATAGA+GGG | + | chr5.4:32338199-32338218 | None:intergenic | 20.0% |
| !! | ACATGAAAAACTTATTATAG+CGG | + | chr5.4:32338876-32338895 | None:intergenic | 20.0% |
| !! | AGAATTGAGAGAAATATATA+GGG | + | chr5.4:32338211-32338230 | None:intergenic | 20.0% |
| !! | GCTAAATATATATTGATCTA+AGG | + | chr5.4:32337296-32337315 | None:intergenic | 20.0% |
| !! | TAGAATTGAGAGAAATATAT+AGG | + | chr5.4:32338212-32338231 | None:intergenic | 20.0% |
| !! | TTACAAATCTGATAAGATTT+GGG | - | chr5.4:32339737-32339756 | MS.gene53126:CDS | 20.0% |
| !! | TTCTCAATATTACTGATAAA+AGG | + | chr5.4:32338501-32338520 | None:intergenic | 20.0% |
| !!! | AATATCTCTGTTTTTATTCT+TGG | - | chr5.4:32338161-32338180 | MS.gene53126:intron | 20.0% |
| !!! | TATTAAAAAAATGGCCTTTT+TGG | - | chr5.4:32337565-32337584 | MS.gene53126:intron | 20.0% |
| !!! | TTTGATGTTTCTTTAGTTTA+GGG | - | chr5.4:32337457-32337476 | MS.gene53126:intron | 20.0% |
| !!! | TTTTGATGTTTCTTTAGTTT+AGG | - | chr5.4:32337456-32337475 | MS.gene53126:intron | 20.0% |
| !!! | TTTTTTCCTTTCTAAATCAT+AGG | - | chr5.4:32337654-32337673 | MS.gene53126:intron | 20.0% |
| ! | ATTTCGCAAAACAATTCATT+CGG | - | chr5.4:32337335-32337354 | MS.gene53126:intron | 25.0% |
| ! | CAAGACAAGTATTATTTCAA+TGG | - | chr5.4:32339356-32339375 | MS.gene53126:intron | 25.0% |
| ! | CATGAAAAACTTATTATAGC+GGG | + | chr5.4:32338875-32338894 | None:intergenic | 25.0% |
| ! | GAAAACAAAAGTTCTTGTAT+GGG | - | chr5.4:32339686-32339705 | MS.gene53126:intron | 25.0% |
| ! | GTTACAAATCTGATAAGATT+TGG | - | chr5.4:32339736-32339755 | MS.gene53126:CDS | 25.0% |
| ! | TAAACAATCAATCACATGAT+CGG | + | chr5.4:32337842-32337861 | None:intergenic | 25.0% |
| ! | TATTCCTCAAAGATTTGAAT+AGG | - | chr5.4:32336968-32336987 | MS.gene53126:CDS | 25.0% |
| ! | TGAAAACAAAAGTTCTTGTA+TGG | - | chr5.4:32339685-32339704 | MS.gene53126:intron | 25.0% |
| ! | TTCCATAAATGAATATGCAA+TGG | - | chr5.4:32337488-32337507 | MS.gene53126:intron | 25.0% |
| ! | TTTCAACAAACTAAAAGGTA+CGG | - | chr5.4:32338674-32338693 | MS.gene53126:intron | 25.0% |
| ! | TTTGATTGATGCAAAATTCT+TGG | + | chr5.4:32338354-32338373 | None:intergenic | 25.0% |
| !! | AAATTTGATTCCTCTGAAAA+TGG | + | chr5.4:32337015-32337034 | None:intergenic | 25.0% |
| !! | ATTCAAATCTTTGAGGAATA+GGG | + | chr5.4:32336968-32336987 | None:intergenic | 25.0% |
| !! | TATTCAAATCTTTGAGGAAT+AGG | + | chr5.4:32336969-32336988 | None:intergenic | 25.0% |
| !! | TCATAACAGATTATGTTTTG+AGG | + | chr5.4:32339525-32339544 | None:intergenic | 25.0% |
| !! | TTTTACTACGCTTTATGATT+CGG | + | chr5.4:32338531-32338550 | None:intergenic | 25.0% |
| !! | TTTTGTACAGAGTTGAAAAT+TGG | - | chr5.4:32338400-32338419 | MS.gene53126:intron | 25.0% |
| !!! | ACAATGTTTTTGCTGATATA+AGG | - | chr5.4:32338598-32338617 | MS.gene53126:intron | 25.0% |
| !!! | GAAATAGCAAATTTTAACTC+AGG | + | chr5.4:32339188-32339207 | None:intergenic | 25.0% |
| !!! | GTAGATAATTTATTTTGTCC+AGG | - | chr5.4:32337697-32337716 | MS.gene53126:intron | 25.0% |
| AAACAAGCTTAGTATGTGTT+TGG | + | chr5.4:32337384-32337403 | None:intergenic | 30.0% | |
| AAGTATCATCATGCTAAACT+AGG | - | chr5.4:32338780-32338799 | MS.gene53126:intron | 30.0% | |
| AATTTCATCGAGAGATTACA+AGG | - | chr5.4:32337757-32337776 | MS.gene53126:intron | 30.0% | |
| AGATATTAGAGGAAAAACAG+AGG | + | chr5.4:32338148-32338167 | None:intergenic | 30.0% | |
| AGCAGTCTATTTGAATCAAT+TGG | + | chr5.4:32338760-32338779 | None:intergenic | 30.0% | |
| ATCTCCTATTCAAATCTTTG+AGG | + | chr5.4:32336975-32336994 | None:intergenic | 30.0% | |
| ATTTCATCGAGAGATTACAA+GGG | - | chr5.4:32337758-32337777 | MS.gene53126:intron | 30.0% | |
| CAAAAAACAGAGAAAACAGA+GGG | + | chr5.4:32338087-32338106 | None:intergenic | 30.0% | |
| GTCCATTGCATATTCATTTA+TGG | + | chr5.4:32337493-32337512 | None:intergenic | 30.0% | |
| GTTGTTCCTATGATTTAGAA+AGG | + | chr5.4:32337663-32337682 | None:intergenic | 30.0% | |
| TAAAAGGCTGATAATTCACT+TGG | + | chr5.4:32338485-32338504 | None:intergenic | 30.0% | |
| TCCATGAAGTTACTTCTAAA+TGG | - | chr5.4:32337874-32337893 | MS.gene53126:intron | 30.0% | |
| TGATTCCTCTAAACCAATTT+GGG | + | chr5.4:32337138-32337157 | None:intergenic | 30.0% | |
| TTGATTCCTCTAAACCAATT+TGG | + | chr5.4:32337139-32337158 | None:intergenic | 30.0% | |
| ! | AAAAGTTCTTGTATGGGTTA+AGG | - | chr5.4:32339692-32339711 | MS.gene53126:intron | 30.0% |
| ! | TCTGAAAGATCCAAATTTTC+AGG | + | chr5.4:32337609-32337628 | None:intergenic | 30.0% |
| ! | TGGGTTTTCAACAAACTAAA+AGG | - | chr5.4:32338669-32338688 | MS.gene53126:intron | 30.0% |
| ! | TTTGAAACAACCTTGGATTT+GGG | - | chr5.4:32336911-32336930 | MS.gene53126:CDS | 30.0% |
| !! | AATGAATGAAGTCATTTTCC+TGG | + | chr5.4:32337718-32337737 | None:intergenic | 30.0% |
| !! | ATTTGTTGTCTACTACTCTA+TGG | - | chr5.4:32338453-32338472 | MS.gene53126:intron | 30.0% |
| !! | TAGTTTGTTGAAAACCCATT+TGG | + | chr5.4:32338667-32338686 | None:intergenic | 30.0% |
| !! | TCTGTTTTGGATGTGAAATT+GGG | - | chr5.4:32337424-32337443 | MS.gene53126:intron | 30.0% |
| !! | TTCTGTTTTGGATGTGAAAT+TGG | - | chr5.4:32337423-32337442 | MS.gene53126:intron | 30.0% |
| !!! | ACATACTAAGCTTGTTTTAG+TGG | - | chr5.4:32337387-32337406 | MS.gene53126:intron | 30.0% |
| !!! | ATTGTTTGTTTTGAAACTGC+AGG | + | chr5.4:32337794-32337813 | None:intergenic | 30.0% |
| !!! | GTTCTTTTTTCCCTTTAATG+TGG | - | chr5.4:32336802-32336821 | MS.gene53126:CDS | 30.0% |
| !!! | TTGTTTGTTTTGAAACTGCA+GGG | + | chr5.4:32337793-32337812 | None:intergenic | 30.0% |
| AAAGTGGCAAGTTTGAAGAT+TGG | - | chr5.4:32336647-32336666 | MS.gene53126:CDS | 35.0% | |
| AAGCTACATATGACATGTAG+AGG | + | chr5.4:32337907-32337926 | None:intergenic | 35.0% | |
| AATGGAAACTTCCCATGAAA+AGG | + | chr5.4:32336851-32336870 | None:intergenic | 35.0% | |
| ACCCAAAAAAGCCACATTAA+AGG | + | chr5.4:32336816-32336835 | None:intergenic | 35.0% | |
| AGTAACACTAACACCAAACA+GGG | + | chr5.4:32338578-32338597 | None:intergenic | 35.0% | |
| ATATGACATGTAGAGGATCT+TGG | + | chr5.4:32337900-32337919 | None:intergenic | 35.0% | |
| ATGGAAACTTCCCATGAAAA+GGG | + | chr5.4:32336850-32336869 | None:intergenic | 35.0% | |
| ATTTGAATGTGTCAGCGAAA+GGG | + | chr5.4:32338923-32338942 | None:intergenic | 35.0% | |
| CAATAAAACAGAGGAAACAG+AGG | + | chr5.4:32338118-32338137 | None:intergenic | 35.0% | |
| CACGAAAAACTTATTATCGC+AGG | + | chr5.4:32339046-32339065 | None:intergenic | 35.0% | |
| CACTTGTATACAATGTAGTC+AGG | + | chr5.4:32338321-32338340 | None:intergenic | 35.0% | |
| CCCAAAAAAGCCACATTAAA+GGG | + | chr5.4:32336815-32336834 | None:intergenic | 35.0% | |
| CTGATACTCTAATAGCATCT+CGG | + | chr5.4:32339812-32339831 | None:intergenic | 35.0% | |
| GAAAAATAGAGGGAAAACAG+AGG | + | chr5.4:32338189-32338208 | None:intergenic | 35.0% | |
| GAAAGAATGCATAAACTCAC+TGG | + | chr5.4:32338722-32338741 | None:intergenic | 35.0% | |
| GCAAAAAACAGAGAAAACAG+AGG | + | chr5.4:32338088-32338107 | None:intergenic | 35.0% | |
| GCCATTTAGAAGTAACTTCA+TGG | + | chr5.4:32337878-32337897 | None:intergenic | 35.0% | |
| GGAAAATGGCAAAAAAACAG+AGG | + | chr5.4:32338066-32338085 | None:intergenic | 35.0% | |
| GTGTCTATGATATACAAGCA+AGG | - | chr5.4:32337935-32337954 | MS.gene53126:intron | 35.0% | |
| GTTGAATGGACCTGAAAATT+TGG | - | chr5.4:32337596-32337615 | MS.gene53126:intron | 35.0% | |
| TAGTAACACTAACACCAAAC+AGG | + | chr5.4:32338579-32338598 | None:intergenic | 35.0% | |
| TAGTAAGTACACCTTTGACT+CGG | + | chr5.4:32339638-32339657 | None:intergenic | 35.0% | |
| TATGAGTTTGACGAAACCAA+GGG | - | chr5.4:32339540-32339559 | MS.gene53126:intron | 35.0% | |
| TATTTGAATGTGTCAGCGAA+AGG | + | chr5.4:32338924-32338943 | None:intergenic | 35.0% | |
| TGATACTCTAATAGCATCTC+GGG | + | chr5.4:32339811-32339830 | None:intergenic | 35.0% | |
| TTAGTATGTGTTTGGTTGTG+TGG | + | chr5.4:32337376-32337395 | None:intergenic | 35.0% | |
| TTATGAGTTTGACGAAACCA+AGG | - | chr5.4:32339539-32339558 | MS.gene53126:intron | 35.0% | |
| TTCAACACAGACAACCAAAA+AGG | + | chr5.4:32337582-32337601 | None:intergenic | 35.0% | |
| TTCATGGGAAGTTTCCATTT+GGG | - | chr5.4:32336852-32336871 | MS.gene53126:CDS | 35.0% | |
| TTTAGTCCTTGAAATTGCGA+GGG | + | chr5.4:32339239-32339258 | None:intergenic | 35.0% | |
| TTTCATGGGAAGTTTCCATT+TGG | - | chr5.4:32336851-32336870 | MS.gene53126:CDS | 35.0% | |
| ! | AGTCAAAGGTGTACTTACTA+GGG | - | chr5.4:32339638-32339657 | MS.gene53126:intron | 35.0% |
| ! | ATATAAGAGAAAGTGTGTCG+GGG | + | chr5.4:32339100-32339119 | None:intergenic | 35.0% |
| ! | CATATAAGAGAAAGTGTGTC+GGG | + | chr5.4:32339101-32339120 | None:intergenic | 35.0% |
| ! | GCATATAAGAGAAAGTGTGT+CGG | + | chr5.4:32339102-32339121 | None:intergenic | 35.0% |
| ! | GTGTTTGATTCCATTTTCAG+AGG | - | chr5.4:32337002-32337021 | MS.gene53126:intron | 35.0% |
| ! | GTTTGAAACAACCTTGGATT+TGG | - | chr5.4:32336910-32336929 | MS.gene53126:CDS | 35.0% |
| ! | TCTCATGGAATGTTCTGTTT+TGG | - | chr5.4:32337411-32337430 | MS.gene53126:intron | 35.0% |
| ! | TTGCTTGTTTGAAACAACCT+TGG | - | chr5.4:32336904-32336923 | MS.gene53126:CDS | 35.0% |
| ! | TTTTAGTCCTTGAAATTGCG+AGG | + | chr5.4:32339240-32339259 | None:intergenic | 35.0% |
| !! | GTTAGTTTGACCCTTTTCAT+GGG | - | chr5.4:32336837-32336856 | MS.gene53126:CDS | 35.0% |
| !! | GTTTCCTCTGTTTTATTGCT+TGG | - | chr5.4:32338120-32338139 | MS.gene53126:intron | 35.0% |
| !! | TGTTAGTTTGACCCTTTTCA+TGG | - | chr5.4:32336836-32336855 | MS.gene53126:CDS | 35.0% |
| !! | TTTTGGTTGTCTGTGTTGAA+TGG | - | chr5.4:32337582-32337601 | MS.gene53126:intron | 35.0% |
| !!! | CAAATTTTAACTCAGGTGCA+TGG | + | chr5.4:32339181-32339200 | None:intergenic | 35.0% |
| !!! | CCCTTTAATGTGGCTTTTTT+GGG | - | chr5.4:32336812-32336831 | MS.gene53126:CDS | 35.0% |
| !!! | TCCCTTTAATGTGGCTTTTT+TGG | - | chr5.4:32336811-32336830 | MS.gene53126:CDS | 35.0% |
| !!! | TGTTTGTTTTGAAACTGCAG+GGG | + | chr5.4:32337792-32337811 | None:intergenic | 35.0% |
| AAACAACCTTGGATTTGGGA+TGG | - | chr5.4:32336915-32336934 | MS.gene53126:CDS | 40.0% | |
| AGAGAGTTCAATTTACCGCT+CGG | - | chr5.4:32339492-32339511 | MS.gene53126:intron | 40.0% | |
| AGATCTGGTAAACCTTTCTG+TGG | + | chr5.4:32339468-32339487 | None:intergenic | 40.0% | |
| AGTAAGTACACCTTTGACTC+GGG | + | chr5.4:32339637-32339656 | None:intergenic | 40.0% | |
| ATAAACTCACTGGACCATCT+AGG | + | chr5.4:32338712-32338731 | None:intergenic | 40.0% | |
| CAGAGAAAACAGAGGGAAAA+TGG | + | chr5.4:32338080-32338099 | None:intergenic | 40.0% | |
| CAGAGGAAACAGAGGAAAAA+CGG | + | chr5.4:32338110-32338129 | None:intergenic | 40.0% | |
| GATACTCTAATAGCATCTCG+GGG | + | chr5.4:32339810-32339829 | None:intergenic | 40.0% | |
| GATATACAAGCAAGGTAGTC+AGG | - | chr5.4:32337943-32337962 | MS.gene53126:intron | 40.0% | |
| GCAAGTTTGAAGATTGGACT+TGG | - | chr5.4:32336653-32336672 | MS.gene53126:CDS | 40.0% | |
| GGAAAGCTTTCAGCAATAGA+GGG | - | chr5.4:32339660-32339679 | MS.gene53126:intron | 40.0% | |
| GGAACCAAGCAATAAAACAG+AGG | + | chr5.4:32338127-32338146 | None:intergenic | 40.0% | |
| GGTTTGAGAGATCTAAAGGA+AGG | - | chr5.4:32336874-32336893 | MS.gene53126:CDS | 40.0% | |
| TAAACATGAGGGACGTAACA+CGG | + | chr5.4:32338263-32338282 | None:intergenic | 40.0% | |
| TAAACTCACTGGACCATCTA+GGG | + | chr5.4:32338711-32338730 | None:intergenic | 40.0% | |
| TAGATCTCTCAAACCCCAAA+TGG | + | chr5.4:32336869-32336888 | None:intergenic | 40.0% | |
| TAGCGTACCATAAGTTCCAA+CGG | - | chr5.4:32339295-32339314 | MS.gene53126:intron | 40.0% | |
| TCATGGGAAGTTTCCATTTG+GGG | - | chr5.4:32336853-32336872 | MS.gene53126:CDS | 40.0% | |
| TCCTCTAAACCAATTTGGGT+TGG | + | chr5.4:32337134-32337153 | None:intergenic | 40.0% | |
| TGAAGAAGCTAAATTGTCCC+TGG | - | chr5.4:32337044-32337063 | MS.gene53126:intron | 40.0% | |
| TGGATGTGAAATTGGGTATC+TGG | - | chr5.4:32337431-32337450 | MS.gene53126:intron | 40.0% | |
| TGTTAAGAAGTCAAGGCCAA+AGG | - | chr5.4:32339770-32339789 | MS.gene53126:CDS | 40.0% | |
| TGTTGAAGAGAAGGCCAAAT+GGG | - | chr5.4:32338650-32338669 | MS.gene53126:intron | 40.0% | |
| TTGGGGTTTGAGAGATCTAA+AGG | - | chr5.4:32336870-32336889 | MS.gene53126:CDS | 40.0% | |
| ! | GAGTCAAAGGTGTACTTACT+AGG | - | chr5.4:32339637-32339656 | MS.gene53126:intron | 40.0% |
| ! | GATAAGATTTGGGTTACTGC+TGG | - | chr5.4:32339747-32339766 | MS.gene53126:CDS | 40.0% |
| ! | GATTGATTCTGACTTGAAGC+TGG | - | chr5.4:32337235-32337254 | MS.gene53126:intron | 40.0% |
| ! | GCAGGTTGTCTAAAATGCAA+AGG | + | chr5.4:32339028-32339047 | None:intergenic | 40.0% |
| ! | GTCAAAGGTGTACTTACTAG+GGG | - | chr5.4:32339639-32339658 | MS.gene53126:intron | 40.0% |
| !! | AGATTGGACTTGGTGATTCA+TGG | - | chr5.4:32336663-32336682 | MS.gene53126:CDS | 40.0% |
| !! | ATAGTATTGACTTGGGACCT+GGG | + | chr5.4:32337107-32337126 | None:intergenic | 40.0% |
| !! | TGGCCTGATAGTATTGACTT+GGG | + | chr5.4:32337114-32337133 | None:intergenic | 40.0% |
| !! | TTGGCCTGATAGTATTGACT+TGG | + | chr5.4:32337115-32337134 | None:intergenic | 40.0% |
| !!! | GCTTGTTTTAGTGGTTCTCA+TGG | - | chr5.4:32337396-32337415 | MS.gene53126:intron | 40.0% |
| !!! | GGATGTGTTTTAACCCTAGA+TGG | - | chr5.4:32338695-32338714 | MS.gene53126:intron | 40.0% |
| ACACTAACACCAAACAGGGA+CGG | + | chr5.4:32338574-32338593 | None:intergenic | 45.0% | |
| ACGTAACACGGTTCGTAAGT+AGG | + | chr5.4:32338251-32338270 | None:intergenic | 45.0% | |
| ACTATCAGGCCAACCCAAAT+TGG | - | chr5.4:32337122-32337141 | MS.gene53126:intron | 45.0% | |
| AGTCACACCGTTGGAACTTA+TGG | + | chr5.4:32339305-32339324 | None:intergenic | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | + | chr5.4:32338294-32338313 | None:intergenic | 45.0% | |
| ATAAGTTCCAACGGTGTGAC+TGG | - | chr5.4:32339304-32339323 | MS.gene53126:intron | 45.0% | |
| CAAGTACCATCCCAAATCCA+AGG | + | chr5.4:32336924-32336943 | None:intergenic | 45.0% | |
| CTACTTACCATCTGCATGTG+AGG | - | chr5.4:32339575-32339594 | MS.gene53126:intron | 45.0% | |
| CTGTTGAAGAGAAGGCCAAA+TGG | - | chr5.4:32338649-32338668 | MS.gene53126:intron | 45.0% | |
| GAAAGGGCTAAGTGTGAATG+AGG | + | chr5.4:32338907-32338926 | None:intergenic | 45.0% | |
| GAGAGTTCAATTTACCGCTC+GGG | - | chr5.4:32339493-32339512 | MS.gene53126:intron | 45.0% | |
| GATTGACCCTCGCAATTTCA+AGG | - | chr5.4:32339230-32339249 | MS.gene53126:intron | 45.0% | |
| GCGGTAAATTGAACTCTCTG+AGG | + | chr5.4:32339491-32339510 | None:intergenic | 45.0% | |
| GGAGAAAGCTCTCACTAAAG+TGG | - | chr5.4:32336631-32336650 | MS.gene53126:CDS | 45.0% | |
| GGGAAAGCTTTCAGCAATAG+AGG | - | chr5.4:32339659-32339678 | MS.gene53126:intron | 45.0% | |
| GGTCCCAAGTCAATACTATC+AGG | - | chr5.4:32337108-32337127 | MS.gene53126:intron | 45.0% | |
| GGTGTATCGTAAGCATCCTT+TGG | + | chr5.4:32339789-32339808 | None:intergenic | 45.0% | |
| GGTTCGTAAGTAGGATCGAT+AGG | + | chr5.4:32338242-32338261 | None:intergenic | 45.0% | |
| GTACAAAAACCGTCCCTGTT+TGG | - | chr5.4:32338562-32338581 | MS.gene53126:intron | 45.0% | |
| GTAGACAATCAGCTTACCCT+TGG | + | chr5.4:32339559-32339578 | None:intergenic | 45.0% | |
| GTGACAAGTGTGACAGTAGA+GGG | - | chr5.4:32339714-32339733 | MS.gene53126:intron | 45.0% | |
| TCACCTACCTCATTCACACT+TGG | - | chr5.4:32338897-32338916 | MS.gene53126:intron | 45.0% | |
| TTAACAACCAGTCACACCGT+TGG | + | chr5.4:32339314-32339333 | None:intergenic | 45.0% | |
| ! | CTCAAGCACTGTTGAAGAGA+AGG | - | chr5.4:32338641-32338660 | MS.gene53126:intron | 45.0% |
| ! | CTGCTGGTGTTAAGAAGTCA+AGG | - | chr5.4:32339763-32339782 | MS.gene53126:CDS | 45.0% |
| ! | CTTGGATTTGGGATGGTACT+TGG | - | chr5.4:32336922-32336941 | MS.gene53126:CDS | 45.0% |
| ! | GCCAACCCAAATTGGTTTAG+AGG | - | chr5.4:32337130-32337149 | MS.gene53126:intron | 45.0% |
| ! | GCGGGTTGTCTAAAATGCAA+AGG | + | chr5.4:32338857-32338876 | None:intergenic | 45.0% |
| ! | TTGAACTCTCTGAGGAGATC+TGG | + | chr5.4:32339483-32339502 | None:intergenic | 45.0% |
| !! | GATAGTATTGACTTGGGACC+TGG | + | chr5.4:32337108-32337127 | None:intergenic | 45.0% |
| !! | TTTTGAGGAAATAGCCCGAG+CGG | + | chr5.4:32339510-32339529 | None:intergenic | 45.0% |
| !!! | AAATAGTTTTTTTTTTTTTT+GGG | - | chr5.4:32337540-32337559 | MS.gene53126:intron | 5.0% |
| !!! | TAAATAGTTTTTTTTTTTTT+TGG | - | chr5.4:32337539-32337558 | MS.gene53126:intron | 5.0% |
| AAGCTGACCTCACATGCAGA+TGG | + | chr5.4:32339585-32339604 | None:intergenic | 50.0% | |
| ACCTTTCTGTGGCTTACCTG+TGG | + | chr5.4:32339457-32339476 | None:intergenic | 50.0% | |
| AGTGAAGTCGAAGCGAAGCA+CGG | + | chr5.4:32338021-32338040 | None:intergenic | 50.0% | |
| CCTTTCTGTGGCTTACCTGT+GGG | + | chr5.4:32339456-32339475 | None:intergenic | 50.0% | |
| CGATATGCAACCCGAGTCAA+AGG | - | chr5.4:32339624-32339643 | MS.gene53126:intron | 50.0% | |
| CGTCCCTCATGTTTACGTTC+CGG | - | chr5.4:32338268-32338287 | MS.gene53126:intron | 50.0% | |
| CTCGGGTTTGATTCTCTCCA+GGG | + | chr5.4:32337064-32337083 | None:intergenic | 50.0% | |
| GAAAGGGCCAAGTGTGAATG+AGG | + | chr5.4:32339078-32339097 | None:intergenic | 50.0% | |
| GCTTCGACTTCACTCTGGTT+CGG | - | chr5.4:32338027-32338046 | MS.gene53126:intron | 50.0% | |
| GGGCTAAGTGTGAATGAGGT+AGG | + | chr5.4:32338903-32338922 | None:intergenic | 50.0% | |
| GGTGACAAGTGTGACAGTAG+AGG | - | chr5.4:32339713-32339732 | MS.gene53126:intron | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr5.4:32338303-32338322 | None:intergenic | 50.0% | |
| TCTCGGGTTTGATTCTCTCC+AGG | + | chr5.4:32337065-32337084 | None:intergenic | 50.0% | |
| TGCATGTGAGGTCAGCTTCA+AGG | - | chr5.4:32339587-32339606 | MS.gene53126:intron | 50.0% | |
| TGGCCGGAACGTAAACATGA+GGG | + | chr5.4:32338274-32338293 | None:intergenic | 50.0% | |
| TTGGCCGGAACGTAAACATG+AGG | + | chr5.4:32338275-32338294 | None:intergenic | 50.0% | |
| ! | AGAGAAAGTGTGTCGGGGAA+AGG | + | chr5.4:32339095-32339114 | None:intergenic | 50.0% |
| ! | GAGAAAGTGTGTCGGGGAAA+GGG | + | chr5.4:32339094-32339113 | None:intergenic | 50.0% |
| ATCGTGCGATCCTACGTGCT+GGG | + | chr5.4:32337976-32337995 | None:intergenic | 55.0% | |
| CCCACAGGTAAGCCACAGAA+AGG | - | chr5.4:32339453-32339472 | MS.gene53126:intron | 55.0% | |
| CCTACGTAGGTTCGATTGGC+CGG | + | chr5.4:32338290-32338309 | None:intergenic | 55.0% | |
| GAATCAAACCCGAGACCTCG+AGG | - | chr5.4:32337070-32337089 | MS.gene53126:intron | 55.0% | |
| GCTTCGCTTCGACTTCACTC+TGG | - | chr5.4:32338022-32338041 | MS.gene53126:intron | 55.0% | |
| GGGCCAAGTGTGAATGAGGT+AGG | + | chr5.4:32339074-32339093 | None:intergenic | 55.0% | |
| TCTGTGGCTTACCTGTGGGA+AGG | + | chr5.4:32339452-32339471 | None:intergenic | 55.0% | |
| TGTACTCCTCCTCGAGGTCT+CGG | + | chr5.4:32337082-32337101 | None:intergenic | 55.0% | |
| ! | TGCTCTGAATGCCTTCCCAC+AGG | - | chr5.4:32339438-32339457 | MS.gene53126:intron | 55.0% |
| AGGAACGAGTCCCAGCACGT+AGG | - | chr5.4:32337963-32337982 | MS.gene53126:intron | 60.0% | |
| CCGGCCAATCGAACCTACGT+AGG | - | chr5.4:32338287-32338306 | MS.gene53126:intron | 60.0% | |
| GATCGTGCGATCCTACGTGC+TGG | + | chr5.4:32337977-32337996 | None:intergenic | 60.0% | |
| GTACTCCTCCTCGAGGTCTC+GGG | + | chr5.4:32337081-32337100 | None:intergenic | 60.0% | |
| GTCGAAGCGAAGCACGGTTG+AGG | + | chr5.4:32338015-32338034 | None:intergenic | 60.0% | |
| TCAAACCCGAGACCTCGAGG+AGG | - | chr5.4:32337073-32337092 | MS.gene53126:intron | 60.0% | |
| ! | TCGAGGAGGAGTACACTCCC+AGG | - | chr5.4:32337087-32337106 | MS.gene53126:intron | 60.0% |
| ! | TGGGAGTGTACTCCTCCTCG+AGG | + | chr5.4:32337088-32337107 | None:intergenic | 60.0% |
| !! | GAAGCACGGTTGAGGTGCTG+TGG | + | chr5.4:32338007-32338026 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 32336629 | 32339839 | 32336629 | ID=MS.gene53126 |
| chr5.4 | mRNA | 32336629 | 32339839 | 32336629 | ID=MS.gene53126.t1;Parent=MS.gene53126 |
| chr5.4 | exon | 32339732 | 32339839 | 32339732 | ID=MS.gene53126.t1.exon1;Parent=MS.gene53126.t1 |
| chr5.4 | CDS | 32339732 | 32339839 | 32339732 | ID=cds.MS.gene53126.t1;Parent=MS.gene53126.t1 |
| chr5.4 | exon | 32337778 | 32337832 | 32337778 | ID=MS.gene53126.t1.exon2;Parent=MS.gene53126.t1 |
| chr5.4 | CDS | 32337778 | 32337832 | 32337778 | ID=cds.MS.gene53126.t1;Parent=MS.gene53126.t1 |
| chr5.4 | exon | 32336629 | 32337008 | 32336629 | ID=MS.gene53126.t1.exon3;Parent=MS.gene53126.t1 |
| chr5.4 | CDS | 32336629 | 32337008 | 32336629 | ID=cds.MS.gene53126.t1;Parent=MS.gene53126.t1 |
| Gene Sequence |
| Protein sequence |
