Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33706.t1 | XP_003604558.1 | 99.4 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 5.30E-91 | 343.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33706.t1 | Q9M015 | 75.9 | 170 | 41 | 0 | 1 | 170 | 1 | 170 | 1.9e-73 | 276.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33706.t1 | G7JLS2 | 99.4 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 3.8e-91 | 343.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052793 | MS.gene33706 | 0.826377 | 2.80E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33706 | MS.gene071033 | PPI |
| MS.gene95675 | MS.gene33706 | PPI |
| MS.gene33706 | MS.gene55328 | PPI |
| MS.gene33706 | MS.gene93374 | PPI |
| MS.gene33706 | MS.gene95675 | PPI |
| MS.gene53126 | MS.gene33706 | PPI |
| MS.gene33706 | MS.gene78559 | PPI |
| MS.gene33706 | MS.gene069002 | PPI |
| MS.gene33706 | MS.gene33453 | PPI |
| MS.gene33706 | MS.gene99505 | PPI |
| MS.gene33706 | MS.gene85907 | PPI |
| MS.gene99505 | MS.gene33706 | PPI |
| MS.gene33706 | MS.gene052793 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33706.t1 | MTR_4g014490 | 99.412 | 170 | 1 | 0 | 1 | 170 | 1 | 170 | 3.47e-123 | 344 |
| MS.gene33706.t1 | MTR_7g070000 | 85.294 | 170 | 25 | 0 | 1 | 170 | 1 | 170 | 5.24e-105 | 298 |
| MS.gene33706.t1 | MTR_5g043190 | 51.807 | 166 | 77 | 1 | 8 | 170 | 15 | 180 | 7.24e-60 | 184 |
| MS.gene33706.t1 | MTR_4g109140 | 45.977 | 174 | 90 | 1 | 1 | 170 | 1 | 174 | 1.48e-54 | 170 |
| MS.gene33706.t1 | MTR_7g108775 | 35.354 | 99 | 62 | 2 | 56 | 153 | 33 | 130 | 3.98e-15 | 69.3 |
| MS.gene33706.t1 | MTR_7g108775 | 36.842 | 95 | 58 | 2 | 56 | 149 | 33 | 126 | 5.35e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33706.t1 | AT3G08890 | 78.235 | 170 | 37 | 0 | 1 | 170 | 1 | 170 | 2.44e-100 | 286 |
| MS.gene33706.t1 | AT3G08890 | 78.235 | 170 | 37 | 0 | 1 | 170 | 1 | 170 | 2.44e-100 | 286 |
| MS.gene33706.t1 | AT5G37070 | 79.412 | 170 | 35 | 0 | 1 | 170 | 1 | 170 | 2.61e-99 | 283 |
| MS.gene33706.t1 | AT5G01610 | 75.882 | 170 | 41 | 0 | 1 | 170 | 1 | 170 | 1.25e-96 | 277 |
| MS.gene33706.t1 | AT5G01610 | 75.882 | 170 | 41 | 0 | 1 | 170 | 1 | 170 | 1.25e-96 | 277 |
| MS.gene33706.t1 | AT2G03350 | 50.610 | 164 | 78 | 1 | 7 | 167 | 12 | 175 | 9.52e-54 | 169 |
| MS.gene33706.t1 | AT1G02816 | 25.217 | 115 | 83 | 2 | 57 | 168 | 35 | 149 | 1.48e-12 | 62.8 |
| MS.gene33706.t1 | AT4G02370 | 27.368 | 95 | 68 | 1 | 56 | 149 | 34 | 128 | 1.14e-11 | 60.1 |
| MS.gene33706.t1 | AT4G02360 | 29.358 | 109 | 74 | 3 | 51 | 157 | 25 | 132 | 1.84e-11 | 59.3 |
Find 40 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCTTCACCACTGTTAC+AGG | 0.242434 | 4.3:-83809189 | MS.gene33706:CDS |
| TGAAGACAAAAGTTATTATC+TGG | 0.261455 | 4.3:-83809128 | MS.gene33706:CDS |
| CACCACTGTTACAGGTTATC+TGG | 0.277467 | 4.3:-83809181 | MS.gene33706:CDS |
| CTTCGATCCCTCGGAGAAAA+TGG | 0.294455 | 4.3:+83809092 | None:intergenic |
| GCCATTACCAGAGTTGTTAA+AGG | 0.295014 | 4.3:-83809340 | MS.gene33706:CDS |
| TGGTTGGTCAACAAAGTAAA+AGG | 0.300821 | 4.3:-83810680 | MS.gene33706:intron |
| TACTTTGTTGACCAACCATT+TGG | 0.339849 | 4.3:+83810685 | None:intergenic |
| GACAGAATTAAGCTCCTTGC+TGG | 0.374345 | 4.3:+83811832 | None:intergenic |
| TCAACAAGGTTGGATCCTAT+TGG | 0.402846 | 4.3:-83811868 | MS.gene33706:CDS |
| TCCTTTAACAACTCTGGTAA+TGG | 0.418016 | 4.3:+83809339 | None:intergenic |
| GGCTTTCTGATTGAACCAAT+AGG | 0.431334 | 4.3:+83811853 | None:intergenic |
| GGTCTGCGAAGTAGGCTATA+AGG | 0.432562 | 4.3:-83809226 | MS.gene33706:CDS |
| AAGGAGTATGATCTACCAAT+AGG | 0.443273 | 4.3:-83809321 | MS.gene33706:CDS |
| AGGAAAGCTAGCAGACATAG+AGG | 0.449690 | 4.3:-83809154 | MS.gene33706:CDS |
| ATTCCTCAGGTCTGCGAAGT+AGG | 0.457321 | 4.3:-83809234 | MS.gene33706:CDS |
| CACATAGAGCTTCGATCCCT+CGG | 0.465720 | 4.3:+83809083 | None:intergenic |
| TCACGAGGAAAGATTCCTAT+TGG | 0.469668 | 4.3:+83809306 | None:intergenic |
| TACGAATTCAACGAAGAGAC+TGG | 0.481424 | 4.3:-83809273 | MS.gene33706:CDS |
| GCTTGAAGTCTTCATTCCTC+AGG | 0.483186 | 4.3:-83809247 | MS.gene33706:CDS |
| GATCAAGTATTCAACAAGGT+TGG | 0.497292 | 4.3:-83811878 | MS.gene33706:CDS |
| GAAGACAAAAGTTATTATCT+GGG | 0.508796 | 4.3:-83809127 | MS.gene33706:CDS |
| GCATATGATGTTACAAGAGA+TGG | 0.523342 | 4.3:-83809027 | MS.gene33706:CDS |
| TCGAAGCTCTATGTGACTGC+TGG | 0.534882 | 4.3:-83809075 | MS.gene33706:CDS |
| GTATCGAAGGCGGAACCAAA+TGG | 0.544393 | 4.3:-83810700 | MS.gene33706:CDS |
| GCATGAAGAAAACAAGGAGT+AGG | 0.544902 | 4.3:-83809053 | MS.gene33706:CDS |
| GTTACAGGTTATCTGGAGAA+AGG | 0.545382 | 4.3:-83809174 | MS.gene33706:CDS |
| TCATACTCCTTTAACAACTC+TGG | 0.548889 | 4.3:+83809333 | None:intergenic |
| CTGCTGGCATGAAGAAAACA+AGG | 0.561931 | 4.3:-83809059 | MS.gene33706:CDS |
| CTCCAGATAACCTGTAACAG+TGG | 0.588118 | 4.3:+83809179 | None:intergenic |
| AGCAAGGAGCTTAATTCTGT+CGG | 0.592969 | 4.3:-83811830 | MS.gene33706:CDS |
| CATGAAGAAAACAAGGAGTA+GGG | 0.600568 | 4.3:-83809052 | MS.gene33706:CDS |
| TCGTAGTTTGTTGCATCACG+AGG | 0.603536 | 4.3:+83809291 | None:intergenic |
| GGAAAGCTAGCAGACATAGA+GGG | 0.604204 | 4.3:-83809153 | MS.gene33706:CDS |
| CGAAGGCGGAACCAAATGGT+TGG | 0.621013 | 4.3:-83810696 | MS.gene33706:CDS |
| GTTCAATCAGAAAGCCAGCA+AGG | 0.622010 | 4.3:-83811846 | MS.gene33706:CDS |
| TCACTGTCGAGCAGTATCGA+AGG | 0.659831 | 4.3:-83810713 | MS.gene33706:CDS |
| TAGCCTACTTCGCAGACCTG+AGG | 0.660590 | 4.3:+83809231 | None:intergenic |
| AGTGGTGAAGAAACGCAAGA+CGG | 0.697268 | 4.3:+83809197 | None:intergenic |
| AATGGATCAAGTATTCAACA+AGG | 0.730089 | 4.3:-83811882 | MS.gene33706:CDS |
| CTGTCGAGCAGTATCGAAGG+CGG | 0.735255 | 4.3:-83810710 | MS.gene33706:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCCAAAATTATTAATTTT+TGG | - | chr4.3:83809152-83809171 | MS.gene33706:CDS | 10.0% |
| !!! | TATCCAAAAATTAATAATTT+TGG | + | chr4.3:83809158-83809177 | None:intergenic | 10.0% |
| !! | AAAAAACTGAAAAATTGAAA+AGG | + | chr4.3:83809111-83809130 | None:intergenic | 15.0% |
| !! | AAAAACTGAAAAATTGAAAA+GGG | + | chr4.3:83809110-83809129 | None:intergenic | 15.0% |
| !! | AAAATAATTAAACAGTGAAA+AGG | - | chr4.3:83811028-83811047 | MS.gene33706:intron | 15.0% |
| !! | TCTAATAACAAAATTATAGA+AGG | + | chr4.3:83811163-83811182 | None:intergenic | 15.0% |
| !! | AAAACTGAAAAATTGAAAAG+GGG | + | chr4.3:83809109-83809128 | None:intergenic | 20.0% |
| !! | AATAAGTATAAACATCATGA+AGG | - | chr4.3:83811293-83811312 | MS.gene33706:intron | 20.0% |
| !! | ATAAGTATAAACATCATGAA+GGG | - | chr4.3:83811294-83811313 | MS.gene33706:intron | 20.0% |
| !! | ATCAATTGAATTGAATTGAT+GGG | - | chr4.3:83809218-83809237 | MS.gene33706:CDS | 20.0% |
| !! | ATTTAATTCTGATTAAGCAA+GGG | - | chr4.3:83809927-83809946 | MS.gene33706:intron | 20.0% |
| !! | TATTTAATTCTGATTAAGCA+AGG | - | chr4.3:83809926-83809945 | MS.gene33706:intron | 20.0% |
| !! | TTAATATACACCTTAGTAAT+TGG | - | chr4.3:83810785-83810804 | MS.gene33706:intron | 20.0% |
| !! | TTCTATCAATTTCTCAATTT+GGG | + | chr4.3:83810335-83810354 | None:intergenic | 20.0% |
| !! | TTTCTATCAATTTCTCAATT+TGG | + | chr4.3:83810336-83810355 | None:intergenic | 20.0% |
| !!! | AAGATATCTGAATTTTGAAT+TGG | - | chr4.3:83809269-83809288 | MS.gene33706:CDS | 20.0% |
| !!! | GGATATATTTCTATATTGAA+AGG | - | chr4.3:83811487-83811506 | MS.gene33706:intron | 20.0% |
| ! | AAATTTAGTACTTTGAACCA+TGG | - | chr4.3:83810884-83810903 | MS.gene33706:intron | 25.0% |
| ! | AACAAACATAAACATCATTG+TGG | + | chr4.3:83809307-83809326 | None:intergenic | 25.0% |
| ! | AAGCAATGAAAATTCATCTT+TGG | + | chr4.3:83810112-83810131 | None:intergenic | 25.0% |
| ! | ACAATGATGTTTATGTTTGT+TGG | - | chr4.3:83809306-83809325 | MS.gene33706:CDS | 25.0% |
| ! | ACTTAATTATATCACTTTGC+AGG | - | chr4.3:83811511-83811530 | MS.gene33706:intron | 25.0% |
| ! | ATAAATGTTTGAGCAACATA+TGG | + | chr4.3:83810248-83810267 | None:intergenic | 25.0% |
| ! | ATGTTTATACTTATTGCTTG+AGG | + | chr4.3:83811288-83811307 | None:intergenic | 25.0% |
| ! | ATTGGAAGGAAAAATTGAAT+TGG | + | chr4.3:83810712-83810731 | None:intergenic | 25.0% |
| ! | GAAGACAAAAGTTATTATCT+GGG | - | chr4.3:83811759-83811778 | MS.gene33706:intron | 25.0% |
| ! | GAATTGTCTAATTATCCAAA+AGG | - | chr4.3:83811258-83811277 | MS.gene33706:intron | 25.0% |
| ! | GATCAATTGAATTGAATTGA+TGG | - | chr4.3:83809217-83809236 | MS.gene33706:CDS | 25.0% |
| ! | TAAGTATAAACATCATGAAG+GGG | - | chr4.3:83811295-83811314 | MS.gene33706:intron | 25.0% |
| ! | TAATTAAACCTCATGGAAAT+TGG | - | chr4.3:83809176-83809195 | MS.gene33706:CDS | 25.0% |
| ! | TAATTAGACAATTCATGAAG+TGG | + | chr4.3:83811252-83811271 | None:intergenic | 25.0% |
| ! | TCTATTTGACATAGCAATAA+TGG | - | chr4.3:83811445-83811464 | MS.gene33706:intron | 25.0% |
| ! | TGAAGACAAAAGTTATTATC+TGG | - | chr4.3:83811758-83811777 | MS.gene33706:intron | 25.0% |
| ! | TTAATGAGATGATTCTGTTA+CGG | - | chr4.3:83809816-83809835 | MS.gene33706:intron | 25.0% |
| ! | TTAGAGAAGAAATTATCATG+CGG | + | chr4.3:83810959-83810978 | None:intergenic | 25.0% |
| ! | TTGAGAAATTGATAGAAAAC+TGG | - | chr4.3:83810338-83810357 | MS.gene33706:intron | 25.0% |
| ! | TTGATGTAATTACATGCAAT+GGG | + | chr4.3:83810736-83810755 | None:intergenic | 25.0% |
| ! | TTGGAAGGAAAAATTGAATT+GGG | + | chr4.3:83810711-83810730 | None:intergenic | 25.0% |
| !! | AAAGATGAATTTTCATTGCT+TGG | - | chr4.3:83810111-83810130 | MS.gene33706:intron | 25.0% |
| !! | AATTTACAAGCCTATTTTGT+AGG | - | chr4.3:83810674-83810693 | MS.gene33706:intron | 25.0% |
| !! | ATTTACAAGCCTATTTTGTA+GGG | - | chr4.3:83810675-83810694 | MS.gene33706:intron | 25.0% |
| !! | GGTCTGTTTATAAGTTATTT+TGG | - | chr4.3:83810908-83810927 | MS.gene33706:intron | 25.0% |
| !! | TGACTCATAAATACATTTTC+AGG | + | chr4.3:83810644-83810663 | None:intergenic | 25.0% |
| !! | TTTTGGATAATTAAACCTCA+TGG | - | chr4.3:83809169-83809188 | MS.gene33706:CDS | 25.0% |
| !!! | TATCTCTAAAACTGTAGTAA+TGG | + | chr4.3:83811358-83811377 | None:intergenic | 25.0% |
| !!! | TTTTAGGTGATTTTAAGTAC+TGG | - | chr4.3:83809625-83809644 | MS.gene33706:intron | 25.0% |
| AAATAAAGTAGAACCATTGG+TGG | + | chr4.3:83811227-83811246 | None:intergenic | 30.0% | |
| AGGAAAAAATTGGACATAAG+AGG | + | chr4.3:83810525-83810544 | None:intergenic | 30.0% | |
| ATTCATCAAAAACTAAGAGC+TGG | + | chr4.3:83809697-83809716 | None:intergenic | 30.0% | |
| CAGAAAGGTAAGGAAAAAAT+TGG | + | chr4.3:83810535-83810554 | None:intergenic | 30.0% | |
| CCACATCTACAAGTAAAATT+AGG | + | chr4.3:83809757-83809776 | None:intergenic | 30.0% | |
| GAAAAAATTGGACATAAGAG+GGG | + | chr4.3:83810523-83810542 | None:intergenic | 30.0% | |
| GAAATGGAGAGAATAAACAA+TGG | + | chr4.3:83811333-83811352 | None:intergenic | 30.0% | |
| GAGAAATAAAGTAGAACCAT+TGG | + | chr4.3:83811230-83811249 | None:intergenic | 30.0% | |
| GATTTCAAATCATGTGACAA+AGG | + | chr4.3:83811420-83811439 | None:intergenic | 30.0% | |
| GGAAAAAATTGGACATAAGA+GGG | + | chr4.3:83810524-83810543 | None:intergenic | 30.0% | |
| GTTGATGTAATTACATGCAA+TGG | + | chr4.3:83810737-83810756 | None:intergenic | 30.0% | |
| TATGTGCACTAATCTTACAA+TGG | - | chr4.3:83810824-83810843 | MS.gene33706:intron | 30.0% | |
| TCAAAAGTCACCAATTACTA+AGG | + | chr4.3:83810798-83810817 | None:intergenic | 30.0% | |
| TCATTCTAAATCCAAAACAC+AGG | + | chr4.3:83810439-83810458 | None:intergenic | 30.0% | |
| TGAAATCTTAAATGTTGCAC+AGG | + | chr4.3:83810294-83810313 | None:intergenic | 30.0% | |
| TGATGAATAAGTCATGACAT+CGG | - | chr4.3:83809709-83809728 | MS.gene33706:intron | 30.0% | |
| TGATGTAATTACATGCAATG+GGG | + | chr4.3:83810735-83810754 | None:intergenic | 30.0% | |
| TTTGAGCAACATATGGAAAT+AGG | + | chr4.3:83810241-83810260 | None:intergenic | 30.0% | |
| ! | AACTGTAGTAATGGAAGAAA+TGG | + | chr4.3:83811349-83811368 | None:intergenic | 30.0% |
| ! | CCTAATTTTACTTGTAGATG+TGG | - | chr4.3:83809754-83809773 | MS.gene33706:intron | 30.0% |
| ! | GGTATTTTGTACAACATCAA+AGG | - | chr4.3:83811466-83811485 | MS.gene33706:intron | 30.0% |
| ! | TTGCTTGTCGTTAGAATTTT+AGG | - | chr4.3:83809609-83809628 | MS.gene33706:intron | 30.0% |
| ! | TTTCTCAATTTGGGATTACA+AGG | + | chr4.3:83810326-83810345 | None:intergenic | 30.0% |
| !! | CAATTTTAAGTACTAGACCA+CGG | + | chr4.3:83809360-83809379 | None:intergenic | 30.0% |
| !! | GTAATTGGTGACTTTTGAAA+CGG | - | chr4.3:83810800-83810819 | MS.gene33706:intron | 30.0% |
| !!! | ACATTTATCTTTTCAAGTCC+TGG | - | chr4.3:83810260-83810279 | MS.gene33706:intron | 30.0% |
| !!! | TTTCCTTGTTTTTGTTGAAC+TGG | + | chr4.3:83809456-83809475 | None:intergenic | 30.0% |
| AAACTGAAAATAGTCAGCGT+AGG | - | chr4.3:83810473-83810492 | MS.gene33706:intron | 35.0% | |
| AACCATGTTTAGATGCTTTG+CGG | - | chr4.3:83810754-83810773 | MS.gene33706:intron | 35.0% | |
| AACTGAAAATAGTCAGCGTA+GGG | - | chr4.3:83810474-83810493 | MS.gene33706:intron | 35.0% | |
| AACTTATAAACAGACCACCA+TGG | + | chr4.3:83810904-83810923 | None:intergenic | 35.0% | |
| AGTGAAGCTGTATGAGAAAT+AGG | - | chr4.3:83809848-83809867 | MS.gene33706:intron | 35.0% | |
| AGTGACTGCATATCAAAAGA+AGG | + | chr4.3:83810158-83810177 | None:intergenic | 35.0% | |
| ATAAACATCATGAAGGGGTT+AGG | - | chr4.3:83811300-83811319 | MS.gene33706:intron | 35.0% | |
| CAAGGAAAAATGAATACGTG+TGG | - | chr4.3:83809468-83809487 | MS.gene33706:intron | 35.0% | |
| CATGAAGAAAACAAGGAGTA+GGG | - | chr4.3:83811834-83811853 | MS.gene33706:CDS | 35.0% | |
| CATTACTCATCATCTCTAAC+AGG | + | chr4.3:83810033-83810052 | None:intergenic | 35.0% | |
| CTAAATCCAAAACACAGGTA+CGG | + | chr4.3:83810434-83810453 | None:intergenic | 35.0% | |
| CTAACTCATCCCTACAAAAT+AGG | + | chr4.3:83810687-83810706 | None:intergenic | 35.0% | |
| GATCAAGTATTCAACAAGGT+TGG | - | chr4.3:83809008-83809027 | MS.gene33706:CDS | 35.0% | |
| GCATATGATGTTACAAGAGA+TGG | - | chr4.3:83811859-83811878 | MS.gene33706:CDS | 35.0% | |
| GTACCAGTTCAACAAAAACA+AGG | - | chr4.3:83809450-83809469 | MS.gene33706:intron | 35.0% | |
| TAATTACATGCAATGGGGAT+TGG | + | chr4.3:83810730-83810749 | None:intergenic | 35.0% | |
| TACTTTGTTGACCAACCATT+TGG | + | chr4.3:83810204-83810223 | None:intergenic | 35.0% | |
| TCAAAACTGAACATGTGAGA+AGG | + | chr4.3:83810057-83810076 | None:intergenic | 35.0% | |
| TCAATGTGAGACTCAACAAA+GGG | + | chr4.3:83810610-83810629 | None:intergenic | 35.0% | |
| TCATACTCCTTTAACAACTC+TGG | + | chr4.3:83811556-83811575 | None:intergenic | 35.0% | |
| TCATCTCTAACAGGAAGATA+AGG | + | chr4.3:83810024-83810043 | None:intergenic | 35.0% | |
| TCCTTTAACAACTCTGGTAA+TGG | + | chr4.3:83811550-83811569 | None:intergenic | 35.0% | |
| TGTGGATGAGATATAGACAT+TGG | - | chr4.3:83809772-83809791 | MS.gene33706:intron | 35.0% | |
| TTCAATGTGAGACTCAACAA+AGG | + | chr4.3:83810611-83810630 | None:intergenic | 35.0% | |
| TTTAGTACTTTGAACCATGG+TGG | - | chr4.3:83810887-83810906 | MS.gene33706:intron | 35.0% | |
| ! | AAGGAGTATGATCTACCAAT+AGG | - | chr4.3:83811565-83811584 | MS.gene33706:intron | 35.0% |
| ! | ATTGCTTGAGGAAAACCTTT+TGG | + | chr4.3:83811276-83811295 | None:intergenic | 35.0% |
| ! | CTATTTTGTAGGGATGAGTT+AGG | - | chr4.3:83810685-83810704 | MS.gene33706:CDS | 35.0% |
| ! | CTTTTCAAAGTAGAAGCTCA+CGG | - | chr4.3:83809398-83809417 | MS.gene33706:intron | 35.0% |
| ! | TGGTTGGTCAACAAAGTAAA+AGG | - | chr4.3:83810206-83810225 | MS.gene33706:intron | 35.0% |
| ! | TTGTTGGTAAGCAGATTCTA+TGG | - | chr4.3:83809322-83809341 | MS.gene33706:CDS | 35.0% |
| AATAAGTCATGACATCGGTG+AGG | - | chr4.3:83809714-83809733 | MS.gene33706:intron | 40.0% | |
| ACCGTTAACTCTTACTTCAG+AGG | - | chr4.3:83809579-83809598 | MS.gene33706:intron | 40.0% | |
| AGAGATGAGAGAAGACAGAA+AGG | + | chr4.3:83810550-83810569 | None:intergenic | 40.0% | |
| AGCAAGGAGCTTAATTCTGT+CGG | - | chr4.3:83809056-83809075 | MS.gene33706:CDS | 40.0% | |
| ATAAGAGGGGTGAGAATACA+GGG | + | chr4.3:83810510-83810529 | None:intergenic | 40.0% | |
| ATAAGTCATGACATCGGTGA+GGG | - | chr4.3:83809715-83809734 | MS.gene33706:intron | 40.0% | |
| ATGTAGTTTGAGTGCGATGT+AGG | - | chr4.3:83809901-83809920 | MS.gene33706:intron | 40.0% | |
| CTAAACCAGTTTGACACTAG+TGG | - | chr4.3:83811189-83811208 | MS.gene33706:intron | 40.0% | |
| GACTGCATATCAAAAGAAGG+TGG | + | chr4.3:83810155-83810174 | None:intergenic | 40.0% | |
| GCATGAAGAAAACAAGGAGT+AGG | - | chr4.3:83811833-83811852 | MS.gene33706:CDS | 40.0% | |
| GCCATTACCAGAGTTGTTAA+AGG | - | chr4.3:83811546-83811565 | MS.gene33706:intron | 40.0% | |
| GGAGAGAATAAACAATGGAG+AGG | + | chr4.3:83811328-83811347 | None:intergenic | 40.0% | |
| GGATCAAAATACTCGCAGTT+AGG | - | chr4.3:83810359-83810378 | MS.gene33706:intron | 40.0% | |
| GGCTTTCTGATTGAACCAAT+AGG | + | chr4.3:83809036-83809055 | None:intergenic | 40.0% | |
| GTATGAAGCAAAACCACCAA+TGG | - | chr4.3:83811211-83811230 | MS.gene33706:intron | 40.0% | |
| GTTACAGGTTATCTGGAGAA+AGG | - | chr4.3:83811712-83811731 | MS.gene33706:intron | 40.0% | |
| GTTTGTAACAAAGCTAACGC+TGG | + | chr4.3:83810002-83810021 | None:intergenic | 40.0% | |
| TACGAATTCAACGAAGAGAC+TGG | - | chr4.3:83811613-83811632 | MS.gene33706:intron | 40.0% | |
| TCAACAAGGTTGGATCCTAT+TGG | - | chr4.3:83809018-83809037 | MS.gene33706:CDS | 40.0% | |
| TCACGAGGAAAGATTCCTAT+TGG | + | chr4.3:83811583-83811602 | None:intergenic | 40.0% | |
| TCATACCACTAGTGTCAAAC+TGG | + | chr4.3:83811197-83811216 | None:intergenic | 40.0% | |
| TGAGAGAAGACAGAAAGGTA+AGG | + | chr4.3:83810545-83810564 | None:intergenic | 40.0% | |
| TGGTAAATGCAACACCAACA+GGG | + | chr4.3:83809677-83809696 | None:intergenic | 40.0% | |
| TTGTCTAACCGATAACGATC+AGG | - | chr4.3:83809527-83809546 | MS.gene33706:intron | 40.0% | |
| ! | AACCGCAAAGCATCTAAACA+TGG | + | chr4.3:83810759-83810778 | None:intergenic | 40.0% |
| ! | CGTGAGCTTCTACTTTGAAA+AGG | + | chr4.3:83809400-83809419 | None:intergenic | 40.0% |
| ! | TAGTATCCGTACCTGTGTTT+TGG | - | chr4.3:83810425-83810444 | MS.gene33706:intron | 40.0% |
| !! | GCCTCTGAAGTAAGAGTTAA+CGG | + | chr4.3:83809583-83809602 | None:intergenic | 40.0% |
| !! | TTTTAAGTACTAGACCACGG+TGG | + | chr4.3:83809357-83809376 | None:intergenic | 40.0% |
| !!! | TTTTAAGTACTGGTCCACTG+TGG | - | chr4.3:83809635-83809654 | MS.gene33706:intron | 40.0% |
| AGATGATTCTGTTACGGCGA+GGG | - | chr4.3:83809822-83809841 | MS.gene33706:intron | 45.0% | |
| AGGAAAGCTAGCAGACATAG+AGG | - | chr4.3:83811732-83811751 | MS.gene33706:intron | 45.0% | |
| AGTGGTGAAGAAACGCAAGA+CGG | + | chr4.3:83811692-83811711 | None:intergenic | 45.0% | |
| ATGGATCTCCACAGTTAGTG+TGG | - | chr4.3:83810843-83810862 | MS.gene33706:intron | 45.0% | |
| CACCACTGTTACAGGTTATC+TGG | - | chr4.3:83811705-83811724 | MS.gene33706:intron | 45.0% | |
| CATAAGAGGGGTGAGAATAC+AGG | + | chr4.3:83810511-83810530 | None:intergenic | 45.0% | |
| CGTTTCTTCACCACTGTTAC+AGG | - | chr4.3:83811697-83811716 | MS.gene33706:intron | 45.0% | |
| CTCCAGATAACCTGTAACAG+TGG | + | chr4.3:83811710-83811729 | None:intergenic | 45.0% | |
| CTGCTGGCATGAAGAAAACA+AGG | - | chr4.3:83811827-83811846 | MS.gene33706:CDS | 45.0% | |
| CTGGTAAATGCAACACCAAC+AGG | + | chr4.3:83809678-83809697 | None:intergenic | 45.0% | |
| GACAGAATTAAGCTCCTTGC+TGG | + | chr4.3:83809057-83809076 | None:intergenic | 45.0% | |
| GACAGTGACCTGATCGTTAT+CGG | + | chr4.3:83809538-83809557 | None:intergenic | 45.0% | |
| GATCTGCAACTTAGGTCTGT+AGG | - | chr4.3:83809961-83809980 | MS.gene33706:intron | 45.0% | |
| GCGTGTTTCCAATTTCCATG+AGG | + | chr4.3:83809187-83809206 | None:intergenic | 45.0% | |
| GCTAACGCTGGATTATGACA+CGG | + | chr4.3:83809990-83810009 | None:intergenic | 45.0% | |
| GCTTGAAGTCTTCATTCCTC+AGG | - | chr4.3:83811639-83811658 | MS.gene33706:intron | 45.0% | |
| GGAAAGCTAGCAGACATAGA+GGG | - | chr4.3:83811733-83811752 | MS.gene33706:intron | 45.0% | |
| GTTCAATCAGAAAGCCAGCA+AGG | - | chr4.3:83809040-83809059 | MS.gene33706:CDS | 45.0% | |
| TAAATGCAACACCAACAGGG+TGG | + | chr4.3:83809674-83809693 | None:intergenic | 45.0% | |
| TAAGTCATGACATCGGTGAG+GGG | - | chr4.3:83809716-83809735 | MS.gene33706:intron | 45.0% | |
| TACATGCAATGGGGATTGGA+AGG | + | chr4.3:83810726-83810745 | None:intergenic | 45.0% | |
| TGTTCAGTCCACACTAACTG+TGG | + | chr4.3:83810854-83810873 | None:intergenic | 45.0% | |
| ! | AGTGACAACCATTTTCTCCG+AGG | - | chr4.3:83811786-83811805 | MS.gene33706:intron | 45.0% |
| ! | GTGACAACCATTTTCTCCGA+GGG | - | chr4.3:83811787-83811806 | MS.gene33706:intron | 45.0% |
| ! | TCTTAGCCATGATGACGAGT+AGG | - | chr4.3:83809556-83809575 | MS.gene33706:intron | 45.0% |
| !! | TCGTAGTTTGTTGCATCACG+AGG | + | chr4.3:83811598-83811617 | None:intergenic | 45.0% |
| AACGGTCCTACTCGTCATCA+TGG | + | chr4.3:83809565-83809584 | None:intergenic | 50.0% | |
| AGCTAGGACGGTGACTTGAT+CGG | - | chr4.3:83809428-83809447 | MS.gene33706:intron | 50.0% | |
| ATCAAGTCACCGTCCTAGCT+AGG | + | chr4.3:83809428-83809447 | None:intergenic | 50.0% | |
| ATTCCTCAGGTCTGCGAAGT+AGG | - | chr4.3:83811652-83811671 | MS.gene33706:intron | 50.0% | |
| CACATAGAGCTTCGATCCCT+CGG | + | chr4.3:83811806-83811825 | None:intergenic | 50.0% | |
| CACCATAGAATCCACCCTGT+TGG | - | chr4.3:83809660-83809679 | MS.gene33706:intron | 50.0% | |
| CTTCGATCCCTCGGAGAAAA+TGG | + | chr4.3:83811797-83811816 | None:intergenic | 50.0% | |
| GAGATGATTCTGTTACGGCG+AGG | - | chr4.3:83809821-83809840 | MS.gene33706:intron | 50.0% | |
| GATTCTATGGTGGTCCACAG+TGG | + | chr4.3:83809652-83809671 | None:intergenic | 50.0% | |
| GGTCTGCGAAGTAGGCTATA+AGG | - | chr4.3:83811660-83811679 | MS.gene33706:intron | 50.0% | |
| GTATCGAAGGCGGAACCAAA+TGG | - | chr4.3:83810186-83810205 | MS.gene33706:intron | 50.0% | |
| GTTGCACAGGTTTCATAGCC+AGG | + | chr4.3:83810281-83810300 | None:intergenic | 50.0% | |
| TCGAAGCTCTATGTGACTGC+TGG | - | chr4.3:83811811-83811830 | MS.gene33706:intron | 50.0% | |
| TTAAGCAAGGGAAAGACGCG+AGG | - | chr4.3:83809939-83809958 | MS.gene33706:intron | 50.0% | |
| ! | CAACAGGGTGGATTCTATGG+TGG | + | chr4.3:83809662-83809681 | None:intergenic | 50.0% |
| ! | CACCAACAGGGTGGATTCTA+TGG | + | chr4.3:83809665-83809684 | None:intergenic | 50.0% |
| ! | TCACTGTCGAGCAGTATCGA+AGG | - | chr4.3:83810173-83810192 | MS.gene33706:intron | 50.0% |
| AAGTCACCGTCCTAGCTAGG+AGG | + | chr4.3:83809425-83809444 | None:intergenic | 55.0% | |
| CGAAGGCGGAACCAAATGGT+TGG | - | chr4.3:83810190-83810209 | MS.gene33706:intron | 55.0% | |
| GACATCGGTGAGGGGAAATG+TGG | - | chr4.3:83809724-83809743 | MS.gene33706:intron | 55.0% | |
| GACGCGAGGATCTGCAACTT+AGG | - | chr4.3:83809953-83809972 | MS.gene33706:intron | 55.0% | |
| TAGCCTACTTCGCAGACCTG+AGG | + | chr4.3:83811658-83811677 | None:intergenic | 55.0% | |
| TATGGTCACGTTGTCCACCG+TGG | - | chr4.3:83809340-83809359 | MS.gene33706:CDS | 55.0% | |
| ! | CTGTCGAGCAGTATCGAAGG+CGG | - | chr4.3:83810176-83810195 | MS.gene33706:intron | 55.0% |
| AGCTCACGGTCCTCCTAGCT+AGG | - | chr4.3:83809412-83809431 | MS.gene33706:intron | 60.0% | |
| CACGGTCCTCCTAGCTAGGA+CGG | - | chr4.3:83809416-83809435 | MS.gene33706:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 83809005 | 83811903 | 83809005 | ID=MS.gene33706 |
| chr4.3 | mRNA | 83809005 | 83811903 | 83809005 | ID=MS.gene33706.t1;Parent=MS.gene33706 |
| chr4.3 | exon | 83811817 | 83811903 | 83811817 | ID=MS.gene33706.t1.exon1;Parent=MS.gene33706.t1 |
| chr4.3 | CDS | 83811817 | 83811903 | 83811817 | ID=cds.MS.gene33706.t1;Parent=MS.gene33706.t1 |
| chr4.3 | exon | 83810681 | 83810735 | 83810681 | ID=MS.gene33706.t1.exon2;Parent=MS.gene33706.t1 |
| chr4.3 | CDS | 83810681 | 83810735 | 83810681 | ID=cds.MS.gene33706.t1;Parent=MS.gene33706.t1 |
| chr4.3 | exon | 83809005 | 83809375 | 83809005 | ID=MS.gene33706.t1.exon3;Parent=MS.gene33706.t1 |
| chr4.3 | CDS | 83809005 | 83809375 | 83809005 | ID=cds.MS.gene33706.t1;Parent=MS.gene33706.t1 |
| Gene Sequence |
| Protein sequence |
