Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071033.t1 | XP_003623361.1 | 98.2 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 5.00E-89 | 337 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071033.t1 | Q9M015 | 72.9 | 170 | 46 | 0 | 1 | 170 | 1 | 170 | 2.1e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071033.t1 | G7KT78 | 98.2 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 3.6e-89 | 337.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene071033 | 0.810437 | 1.15E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene071033 | 0.830356 | 3.08E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene071033 | 0.806826 | 6.81E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene071033 | 0.805904 | 1.07E-49 | -1.69E-46 |
| MS.gene053621 | MS.gene071033 | 0.805766 | 1.14E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene071033 | 0.80794 | 3.95E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene071033 | 0.824647 | 7.21E-54 | -1.69E-46 |
| MS.gene054801 | MS.gene071033 | 0.811194 | 7.91E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene071033 | 0.813326 | 2.71E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene071033 | 0.837459 | 5.14E-57 | -1.69E-46 |
| MS.gene055875 | MS.gene071033 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene071033 | 0.81701 | 4.12E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene071033 | 0.81079 | 9.67E-51 | -1.69E-46 |
| MS.gene057656 | MS.gene071033 | 0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene057755 | MS.gene071033 | 0.810385 | 1.18E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene071033 | 0.809847 | 1.55E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene071033 | 0.804271 | 2.34E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene071033 | 0.821616 | 3.67E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene071033 | 0.826259 | 2.99E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene071033 | 0.803443 | 3.48E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene071033 | 0.826482 | 2.65E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071033 | MS.gene33453 | PPI |
| MS.gene071033 | MS.gene052793 | PPI |
| MS.gene99505 | MS.gene071033 | PPI |
| MS.gene33706 | MS.gene071033 | PPI |
| MS.gene95675 | MS.gene071033 | PPI |
| MS.gene85907 | MS.gene071033 | PPI |
| MS.gene071033 | MS.gene93374 | PPI |
| MS.gene53126 | MS.gene071033 | PPI |
| MS.gene071033 | MS.gene55328 | PPI |
| MS.gene071033 | MS.gene78559 | PPI |
| MS.gene071033 | MS.gene069002 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071033.t1 | MTR_7g070000 | 98.235 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 5.28e-122 | 341 |
| MS.gene071033.t1 | MTR_4g014490 | 84.118 | 170 | 27 | 0 | 1 | 170 | 1 | 170 | 1.81e-104 | 296 |
| MS.gene071033.t1 | MTR_5g043190 | 50.000 | 180 | 80 | 2 | 1 | 170 | 1 | 180 | 1.13e-59 | 184 |
| MS.gene071033.t1 | MTR_4g109140 | 48.276 | 174 | 86 | 2 | 1 | 170 | 1 | 174 | 4.61e-54 | 169 |
| MS.gene071033.t1 | MTR_7g108775 | 37.374 | 99 | 60 | 2 | 56 | 153 | 33 | 130 | 9.06e-18 | 76.3 |
| MS.gene071033.t1 | MTR_7g108775 | 38.947 | 95 | 56 | 2 | 56 | 149 | 33 | 126 | 1.69e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071033.t1 | AT3G08890 | 79.412 | 170 | 35 | 0 | 1 | 170 | 1 | 170 | 1.26e-103 | 295 |
| MS.gene071033.t1 | AT3G08890 | 79.412 | 170 | 35 | 0 | 1 | 170 | 1 | 170 | 1.26e-103 | 295 |
| MS.gene071033.t1 | AT5G37070 | 78.235 | 170 | 37 | 0 | 1 | 170 | 1 | 170 | 4.93e-100 | 285 |
| MS.gene071033.t1 | AT5G01610 | 72.941 | 170 | 46 | 0 | 1 | 170 | 1 | 170 | 7.57e-96 | 275 |
| MS.gene071033.t1 | AT5G01610 | 72.941 | 170 | 46 | 0 | 1 | 170 | 1 | 170 | 7.57e-96 | 275 |
| MS.gene071033.t1 | AT2G03350 | 50.000 | 168 | 80 | 2 | 7 | 170 | 12 | 179 | 7.48e-53 | 166 |
| MS.gene071033.t1 | AT1G02816 | 28.696 | 115 | 79 | 2 | 57 | 168 | 35 | 149 | 1.52e-14 | 67.8 |
| MS.gene071033.t1 | AT4G02360 | 32.110 | 109 | 71 | 3 | 51 | 157 | 25 | 132 | 1.06e-13 | 65.5 |
| MS.gene071033.t1 | AT4G02370 | 30.526 | 95 | 65 | 1 | 56 | 149 | 34 | 128 | 5.73e-13 | 63.5 |
Find 43 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTCACAACCACTGTTTC+TGG | 0.188225 | 7.3:+34911959 | MS.gene071033:CDS |
| TCCTTCAGCAACTCTGTTAA+TGG | 0.193748 | 7.3:-34911809 | None:intergenic |
| TGGCTGGTCAACAAATTAAA+AGG | 0.248718 | 7.3:+34911321 | MS.gene071033:CDS |
| TGAACAAGGTTGGATCTTAC+TGG | 0.286424 | 7.3:+34909132 | MS.gene071033:CDS |
| AACCACTGTTTCTGGTTACT+TGG | 0.327922 | 7.3:+34911967 | MS.gene071033:CDS |
| AGGAAAGCTAGCTGATATAG+AGG | 0.335487 | 7.3:+34911994 | MS.gene071033:CDS |
| TAATTTGTTGACCAGCCATT+TGG | 0.376968 | 7.3:-34911316 | None:intergenic |
| CTCATAGTTTGTTGCGTCAC+GGG | 0.396964 | 7.3:-34911858 | None:intergenic |
| GACAGAGTTGAGTTCCTTGT+TGG | 0.400423 | 7.3:-34909168 | None:intergenic |
| CCAGCAGTGAAGTGCAGCTT+TGG | 0.414741 | 7.3:-34912073 | None:intergenic |
| CTTTGGTCCCTCGGATGTAA+TGG | 0.437677 | 7.3:-34912056 | None:intergenic |
| GTATGAAGAAAACAAGGAAA+AGG | 0.452280 | 7.3:+34912095 | MS.gene071033:CDS |
| GTTTCTGGTTACTTGGAGAA+AGG | 0.453263 | 7.3:+34911974 | MS.gene071033:CDS |
| TCACGGGGAAAGATTCCTAT+TGG | 0.480300 | 7.3:-34911842 | None:intergenic |
| AAGGAGTATGATCTACCAAT+AGG | 0.492134 | 7.3:+34911827 | MS.gene071033:CDS |
| TGAAGACCAAAGTGTTGGTA+TGG | 0.494402 | 7.3:+34912020 | MS.gene071033:CDS |
| TATGAAGAAAACAAGGAAAA+GGG | 0.505441 | 7.3:+34912096 | MS.gene071033:CDS |
| ATTCCTCAAGTGTGTGAAGT+AGG | 0.513172 | 7.3:+34911914 | MS.gene071033:CDS |
| CCAAAGCTGCACTTCACTGC+TGG | 0.514129 | 7.3:+34912073 | MS.gene071033:CDS |
| GAAGTGCAGCTTTGGTCCCT+CGG | 0.517935 | 7.3:-34912065 | None:intergenic |
| TTTCACCCATACCAACACTT+TGG | 0.518152 | 7.3:-34912026 | None:intergenic |
| GATCAGGTATTGAACAAGGT+TGG | 0.526839 | 7.3:+34909122 | MS.gene071033:CDS |
| TCTGTCTGGGTGAATGGATC+AGG | 0.533164 | 7.3:+34909106 | None:intergenic |
| ACTCATAGTTTGTTGCGTCA+CGG | 0.559590 | 7.3:-34911859 | None:intergenic |
| CGAAGGAGGAACCAAATGGC+TGG | 0.561493 | 7.3:+34911305 | MS.gene071033:CDS |
| GCATATGAAGTTTCTAGAGA+TGG | 0.564091 | 7.3:+34912121 | MS.gene071033:CDS |
| CTGCTGGTATGAAGAAAACA+AGG | 0.564271 | 7.3:+34912089 | MS.gene071033:CDS |
| GCATCGAAGGAGGAACCAAA+TGG | 0.573017 | 7.3:+34911301 | MS.gene071033:CDS |
| TCTCTGTCAAGCAGCATCGA+AGG | 0.601189 | 7.3:+34911288 | MS.gene071033:CDS |
| TCATAGTTTGTTGCGTCACG+GGG | 0.605542 | 7.3:-34911857 | None:intergenic |
| GGAAAGCTAGCTGATATAGA+GGG | 0.613066 | 7.3:+34911995 | MS.gene071033:CDS |
| AACAAGGAACTCAACTCTGT+CGG | 0.617344 | 7.3:+34909170 | MS.gene071033:CDS |
| GTTCAGCAAGAAAGCCAACA+AGG | 0.625594 | 7.3:+34909154 | MS.gene071033:CDS |
| GGGTATGAAGACCAAAGTGT+TGG | 0.631130 | 7.3:+34912015 | MS.gene071033:CDS |
| TAGCCTACTTCACACACTTG+AGG | 0.632117 | 7.3:-34911917 | None:intergenic |
| GCCATTAACAGAGTTGCTGA+AGG | 0.634031 | 7.3:+34911808 | MS.gene071033:CDS |
| CTCCAAGTAACCAGAAACAG+TGG | 0.641005 | 7.3:-34911969 | None:intergenic |
| CTGTCAAGCAGCATCGAAGG+AGG | 0.642845 | 7.3:+34911291 | MS.gene071033:CDS |
| TGGTCCCTCGGATGTAATGG+CGG | 0.643277 | 7.3:-34912053 | None:intergenic |
| GAAGACCAAAGTGTTGGTAT+GGG | 0.647423 | 7.3:+34912021 | MS.gene071033:CDS |
| AGTTACCGCCATTACATCCG+AGG | 0.662266 | 7.3:+34912048 | MS.gene071033:CDS |
| AATGGATCAGGTATTGAACA+AGG | 0.667362 | 7.3:+34909118 | None:intergenic |
| GTTACCGCCATTACATCCGA+GGG | 0.676710 | 7.3:+34912049 | MS.gene071033:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATAAATAAAATTTTT+GGG | + | chr7.3:34909770-34909789 | MS.gene071033:intron | 0.0% |
| !!! | TTATAAATAAATAAAATTTT+TGG | + | chr7.3:34909769-34909788 | MS.gene071033:intron | 0.0% |
| !! | AATAATAAAAAAGAGTAAAA+AGG | - | chr7.3:34909243-34909262 | None:intergenic | 10.0% |
| !! | ATAATAAAAAAGAGTAAAAA+GGG | - | chr7.3:34909242-34909261 | None:intergenic | 10.0% |
| !!! | TAAATAAATAAAATTTTTGG+GGG | + | chr7.3:34909772-34909791 | MS.gene071033:intron | 10.0% |
| !! | ATATATTTAACATCAATCTT+GGG | + | chr7.3:34910418-34910437 | MS.gene071033:intron | 15.0% |
| !! | GAGATTATTTAATGATTATT+TGG | + | chr7.3:34909582-34909601 | MS.gene071033:intron | 15.0% |
| !! | TAAGTATTATACTTTGATTA+AGG | + | chr7.3:34911428-34911447 | MS.gene071033:intron | 15.0% |
| !! | TAATAAAAAAGAGTAAAAAG+GGG | - | chr7.3:34909241-34909260 | None:intergenic | 15.0% |
| !! | TTGAATGATTAAATTTCATA+CGG | + | chr7.3:34909736-34909755 | MS.gene071033:intron | 15.0% |
| !! | AATAAAAAAGAGTAAAAAGG+GGG | - | chr7.3:34909240-34909259 | None:intergenic | 20.0% |
| !! | ATCACTTATCTCATATATAA+AGG | + | chr7.3:34910200-34910219 | MS.gene071033:intron | 20.0% |
| !! | ATTTCTTTGTACAATCTATA+CGG | - | chr7.3:34910847-34910866 | None:intergenic | 20.0% |
| !! | GATATATTTAACATCAATCT+TGG | + | chr7.3:34910417-34910436 | MS.gene071033:intron | 20.0% |
| !!! | AACAACTTATTTTTGATCTA+AGG | + | chr7.3:34911487-34911506 | MS.gene071033:intron | 20.0% |
| !!! | AATTTTTCATGCATAATATG+TGG | + | chr7.3:34910710-34910729 | MS.gene071033:intron | 20.0% |
| !!! | ACAACTTATTTTTGATCTAA+GGG | + | chr7.3:34911488-34911507 | MS.gene071033:intron | 20.0% |
| !!! | ACTTATTTGAACTTATTTTC+TGG | - | chr7.3:34911720-34911739 | None:intergenic | 20.0% |
| !!! | ATAACGATGTAAAAGTATTA+AGG | + | chr7.3:34910160-34910179 | MS.gene071033:intron | 20.0% |
| !!! | TATTTGTCGAATTTTAAATC+TGG | + | chr7.3:34909494-34909513 | MS.gene071033:intron | 20.0% |
| !!! | TTTTTCCTCTTTTTTTTAGT+TGG | + | chr7.3:34909281-34909300 | MS.gene071033:intron | 20.0% |
| ! | AAAAAAGAACTAGAAAACCA+AGG | - | chr7.3:34911076-34911095 | None:intergenic | 25.0% |
| ! | AAAGTCTCATATTTATCCTT+AGG | - | chr7.3:34910760-34910779 | None:intergenic | 25.0% |
| ! | AATAAACTATGAAATACCTC+TGG | - | chr7.3:34910357-34910376 | None:intergenic | 25.0% |
| ! | ACATGTTAGAGTGTAAAATT+AGG | - | chr7.3:34911757-34911776 | None:intergenic | 25.0% |
| ! | ACTCATAAAAAGATTGATCA+AGG | - | chr7.3:34910137-34910156 | None:intergenic | 25.0% |
| ! | AGTATCCAACTAAAAAAAAG+AGG | - | chr7.3:34909289-34909308 | None:intergenic | 25.0% |
| ! | ATAAAAAAGAGTAAAAAGGG+GGG | - | chr7.3:34909239-34909258 | None:intergenic | 25.0% |
| ! | ATAAGCAGTTATATGATAGT+GGG | - | chr7.3:34911548-34911567 | None:intergenic | 25.0% |
| ! | ATTAAACAGTTTATCCAAAC+AGG | - | chr7.3:34911455-34911474 | None:intergenic | 25.0% |
| ! | ATTTCTTTGATCTGAATATG+AGG | + | chr7.3:34911112-34911131 | MS.gene071033:intron | 25.0% |
| ! | CATGTTAGAGTGTAAAATTA+GGG | - | chr7.3:34911756-34911775 | None:intergenic | 25.0% |
| ! | GATTTCCATTATCAGTAAAT+GGG | - | chr7.3:34911166-34911185 | None:intergenic | 25.0% |
| ! | TAAGGATAAATATGAGACTT+TGG | + | chr7.3:34910759-34910778 | MS.gene071033:intron | 25.0% |
| ! | TATGAAGAAAACAAGGAAAA+GGG | + | chr7.3:34912096-34912115 | MS.gene071033:CDS | 25.0% |
| ! | TCAATTAAGTTTCATATCCA+GGG | - | chr7.3:34909720-34909739 | None:intergenic | 25.0% |
| ! | TGATTTCCATTATCAGTAAA+TGG | - | chr7.3:34911167-34911186 | None:intergenic | 25.0% |
| ! | TTAAACAGTTTATCCAAACA+GGG | - | chr7.3:34911454-34911473 | None:intergenic | 25.0% |
| ! | TTCAATTAAGTTTCATATCC+AGG | - | chr7.3:34909721-34909740 | None:intergenic | 25.0% |
| ! | TTTATCCCATTTACTGATAA+TGG | + | chr7.3:34911158-34911177 | MS.gene071033:intron | 25.0% |
| ! | TTTCTTTGATCTGAATATGA+GGG | + | chr7.3:34911113-34911132 | MS.gene071033:intron | 25.0% |
| !! | TGAAACTTTTCACTTTGTAT+GGG | + | chr7.3:34911016-34911035 | MS.gene071033:intron | 25.0% |
| !! | TTCTTTATTTAATAAGCCAG+AGG | + | chr7.3:34910338-34910357 | MS.gene071033:intron | 25.0% |
| !! | TTGAAACTTTTCACTTTGTA+TGG | + | chr7.3:34911015-34911034 | MS.gene071033:intron | 25.0% |
| !! | TTTTACACTCTAACATGTTA+AGG | + | chr7.3:34911759-34911778 | MS.gene071033:intron | 25.0% |
| !!! | ATGTCATAAGCTATTTTTGT+AGG | + | chr7.3:34911664-34911683 | MS.gene071033:intron | 25.0% |
| !!! | CAGATTGATTTTTTAATGCT+GGG | - | chr7.3:34910811-34910830 | None:intergenic | 25.0% |
| !!! | GGTTTTAGTGAATAGAAATT+AGG | + | chr7.3:34910731-34910750 | MS.gene071033:intron | 25.0% |
| !!! | TCAGATTGATTTTTTAATGC+TGG | - | chr7.3:34910812-34910831 | None:intergenic | 25.0% |
| !!! | TGATAATGACAATGACATTT+TGG | + | chr7.3:34909844-34909863 | MS.gene071033:intron | 25.0% |
| !!! | TGATTCTTAGTTTTTGTTAG+AGG | + | chr7.3:34909340-34909359 | MS.gene071033:intron | 25.0% |
| !!! | TGTCATAAGCTATTTTTGTA+GGG | + | chr7.3:34911665-34911684 | MS.gene071033:intron | 25.0% |
| !!! | TTGGTTTTCTAGTTCTTTTT+TGG | + | chr7.3:34911075-34911094 | MS.gene071033:intron | 25.0% |
| AAATCATTTGTGAGTCTTGA+GGG | + | chr7.3:34911181-34911200 | MS.gene071033:intron | 30.0% | |
| AAATGTCCAGTATAGACAAA+TGG | - | chr7.3:34910997-34911016 | None:intergenic | 30.0% | |
| AATAGAAATTAGGAAGCCTA+AGG | + | chr7.3:34910741-34910760 | MS.gene071033:intron | 30.0% | |
| ACAGAGACTAAAATAACCAA+AGG | - | chr7.3:34911275-34911294 | None:intergenic | 30.0% | |
| ATTTAACATCAATCTTGGGA+AGG | + | chr7.3:34910422-34910441 | MS.gene071033:intron | 30.0% | |
| ATTTGTCCATTTGTCTATAC+TGG | + | chr7.3:34910988-34911007 | MS.gene071033:intron | 30.0% | |
| CTGGCACATAAACATAAATT+GGG | - | chr7.3:34909957-34909976 | None:intergenic | 30.0% | |
| GATAAGCAGTTATATGATAG+TGG | - | chr7.3:34911549-34911568 | None:intergenic | 30.0% | |
| GTATGAAGAAAACAAGGAAA+AGG | + | chr7.3:34912095-34912114 | MS.gene071033:CDS | 30.0% | |
| TAAAATAACCAAAGGAAGAG+CGG | - | chr7.3:34911267-34911286 | None:intergenic | 30.0% | |
| TAAGAATCATAAGCAAGACA+TGG | - | chr7.3:34909329-34909348 | None:intergenic | 30.0% | |
| TATCAAAAAACAGGAGAACA+AGG | - | chr7.3:34910392-34910411 | None:intergenic | 30.0% | |
| ! | AAATATTTTGCCTCTGTTGT+AGG | + | chr7.3:34910615-34910634 | MS.gene071033:intron | 30.0% |
| ! | AGTGATTGATTTCAAATCGA+TGG | + | chr7.3:34909621-34909640 | MS.gene071033:intron | 30.0% |
| !! | AAAATACGTTGGCTTGTTAA+TGG | + | chr7.3:34911039-34911058 | MS.gene071033:intron | 30.0% |
| !! | ATGTAAAAGTATTAAGGTGC+TGG | + | chr7.3:34910166-34910185 | MS.gene071033:intron | 30.0% |
| !! | ATGTTAAGGTATCATTTTGC+AGG | + | chr7.3:34911773-34911792 | MS.gene071033:intron | 30.0% |
| !! | CTCTGCTATCTGATTTTAAT+TGG | + | chr7.3:34909450-34909469 | MS.gene071033:intron | 30.0% |
| !! | TGGTTTGTTGGATAAAAAGT+GGG | + | chr7.3:34910028-34910047 | MS.gene071033:intron | 30.0% |
| !! | TTGGTTTGTTGGATAAAAAG+TGG | + | chr7.3:34910027-34910046 | MS.gene071033:intron | 30.0% |
| !!! | AATGACATTTTGGTTGTGAT+CGG | + | chr7.3:34909854-34909873 | MS.gene071033:intron | 30.0% |
| !!! | GCATGAATTCTAGAATGTTT+TGG | + | chr7.3:34910065-34910084 | MS.gene071033:intron | 30.0% |
| !!! | TGCTATCTGATTTTAATTGG+TGG | + | chr7.3:34909453-34909472 | MS.gene071033:intron | 30.0% |
| AAATATGAGACTTTGGCGTT+GGG | + | chr7.3:34910766-34910785 | MS.gene071033:intron | 35.0% | |
| ACACATACATGCATGTACTT+TGG | + | chr7.3:34909405-34909424 | MS.gene071033:intron | 35.0% | |
| CAAATGGACAAATACTTGTC+AGG | - | chr7.3:34910981-34911000 | None:intergenic | 35.0% | |
| CACATACATGCATGTACTTT+GGG | + | chr7.3:34909406-34909425 | MS.gene071033:intron | 35.0% | |
| CCAATTTATGTTTATGTGCC+AGG | + | chr7.3:34909955-34909974 | MS.gene071033:intron | 35.0% | |
| CCTGGCACATAAACATAAAT+TGG | - | chr7.3:34909958-34909977 | None:intergenic | 35.0% | |
| CTTTGTATGGGAAAATACGT+TGG | + | chr7.3:34911028-34911047 | MS.gene071033:intron | 35.0% | |
| GAAATCATTTGTGAGTCTTG+AGG | + | chr7.3:34911180-34911199 | MS.gene071033:intron | 35.0% | |
| GATTGGTAGGCTTAAAAACT+TGG | - | chr7.3:34909984-34910003 | None:intergenic | 35.0% | |
| GCATATCAAGTGAGAATGAA+AGG | - | chr7.3:34911526-34911545 | None:intergenic | 35.0% | |
| GGAAATCAACAAAGACCTAT+TGG | - | chr7.3:34910300-34910319 | None:intergenic | 35.0% | |
| GGTTTGTGTATCAGTAAAGA+GGG | + | chr7.3:34910086-34910105 | MS.gene071033:intron | 35.0% | |
| GTTTGTGTATCAGTAAAGAG+GGG | + | chr7.3:34910087-34910106 | MS.gene071033:intron | 35.0% | |
| TAAAGTCACATGATGCACAA+AGG | - | chr7.3:34909917-34909936 | None:intergenic | 35.0% | |
| TAAATATGAGACTTTGGCGT+TGG | + | chr7.3:34910765-34910784 | MS.gene071033:intron | 35.0% | |
| TAATGGCTTAACAATTGCCT+TGG | + | chr7.3:34911056-34911075 | MS.gene071033:intron | 35.0% | |
| TATCCCTCGTATCAAAAAAC+AGG | - | chr7.3:34910401-34910420 | None:intergenic | 35.0% | |
| TGACATACGAGTTTACCAAT+AGG | + | chr7.3:34910282-34910301 | MS.gene071033:intron | 35.0% | |
| TTATATTACCGCTCTTCCTT+TGG | + | chr7.3:34911256-34911275 | MS.gene071033:intron | 35.0% | |
| TTTGATCTGAATATGAGGGA+AGG | + | chr7.3:34911117-34911136 | MS.gene071033:intron | 35.0% | |
| ! | AAGGAGTATGATCTACCAAT+AGG | + | chr7.3:34911827-34911846 | MS.gene071033:CDS | 35.0% |
| ! | GAGTCGAGATATGTTCTTTT+GGG | + | chr7.3:34909689-34909708 | MS.gene071033:intron | 35.0% |
| ! | GCATATGAAGTTTCTAGAGA+TGG | + | chr7.3:34912121-34912140 | MS.gene071033:CDS | 35.0% |
| ! | TGAGTCGAGATATGTTCTTT+TGG | + | chr7.3:34909688-34909707 | MS.gene071033:intron | 35.0% |
| ! | TGGCTGGTCAACAAATTAAA+AGG | + | chr7.3:34911321-34911340 | MS.gene071033:CDS | 35.0% |
| ! | TGGTTTGTGTATCAGTAAAG+AGG | + | chr7.3:34910085-34910104 | MS.gene071033:intron | 35.0% |
| ! | TTTTAAGCCTACCAATCTAG+CGG | + | chr7.3:34909987-34910006 | MS.gene071033:intron | 35.0% |
| ! | TTTTTCTGTGTTTCTCAGTC+AGG | + | chr7.3:34911366-34911385 | MS.gene071033:intron | 35.0% |
| !! | AGTGGATTGATTAAATTGCG+AGG | - | chr7.3:34910473-34910492 | None:intergenic | 35.0% |
| !! | TAATTTGTTGACCAGCCATT+TGG | - | chr7.3:34911319-34911338 | None:intergenic | 35.0% |
| !!! | ATGACATTTTGGTTGTGATC+GGG | + | chr7.3:34909855-34909874 | MS.gene071033:intron | 35.0% |
| !!! | TCTCCTGTTTTTTGATACGA+GGG | + | chr7.3:34910395-34910414 | MS.gene071033:intron | 35.0% |
| !!! | TTCTCCTGTTTTTTGATACG+AGG | + | chr7.3:34910394-34910413 | MS.gene071033:intron | 35.0% |
| AACAAGGAACTCAACTCTGT+CGG | + | chr7.3:34909170-34909189 | MS.gene071033:CDS | 40.0% | |
| ACATGTTTATGCCGCTAGAT+TGG | - | chr7.3:34910001-34910020 | None:intergenic | 40.0% | |
| ACTCCAATATCCTACAACAG+AGG | - | chr7.3:34910628-34910647 | None:intergenic | 40.0% | |
| ACTTTGATTAAGGCCCTGTT+TGG | + | chr7.3:34911438-34911457 | MS.gene071033:intron | 40.0% | |
| AGAACACCAAGTATTCGACA+AGG | - | chr7.3:34910322-34910341 | None:intergenic | 40.0% | |
| AGGAAAGCTAGCTGATATAG+AGG | + | chr7.3:34911994-34912013 | MS.gene071033:CDS | 40.0% | |
| ATGCACTACATTTAGCCTGA+TGG | - | chr7.3:34910497-34910516 | None:intergenic | 40.0% | |
| ATTCCTCAAGTGTGTGAAGT+AGG | + | chr7.3:34911914-34911933 | MS.gene071033:CDS | 40.0% | |
| CTGCTGGTATGAAGAAAACA+AGG | + | chr7.3:34912089-34912108 | MS.gene071033:CDS | 40.0% | |
| GAACACCAAGTATTCGACAA+GGG | - | chr7.3:34910321-34910340 | None:intergenic | 40.0% | |
| GATTTCCCTTGTCGAATACT+TGG | + | chr7.3:34910313-34910332 | MS.gene071033:intron | 40.0% | |
| GGAAAGCTAGCTGATATAGA+GGG | + | chr7.3:34911995-34912014 | MS.gene071033:CDS | 40.0% | |
| GGATTGATTAAATTGCGAGG+AGG | - | chr7.3:34910470-34910489 | None:intergenic | 40.0% | |
| GTCGTACGATCTCAAATCAA+TGG | + | chr7.3:34909557-34909576 | MS.gene071033:intron | 40.0% | |
| TAACATCAATCTTGGGAAGG+TGG | + | chr7.3:34910425-34910444 | MS.gene071033:intron | 40.0% | |
| TCCTTCAGCAACTCTGTTAA+TGG | - | chr7.3:34911812-34911831 | None:intergenic | 40.0% | |
| TCTCTTCAGTCACAGAAAGT+CGG | - | chr7.3:34909521-34909540 | None:intergenic | 40.0% | |
| TGAACAAGGTTGGATCTTAC+TGG | + | chr7.3:34909132-34909151 | MS.gene071033:CDS | 40.0% | |
| TGTGCATCATGTGACTTTAG+AGG | + | chr7.3:34909918-34909937 | MS.gene071033:intron | 40.0% | |
| TTAATCAATCCACTGCCATC+AGG | + | chr7.3:34910479-34910498 | MS.gene071033:intron | 40.0% | |
| TTGCCTCTGTTGTAGGATAT+TGG | + | chr7.3:34910622-34910641 | MS.gene071033:intron | 40.0% | |
| TTTCACCCATACCAACACTT+TGG | - | chr7.3:34912029-34912048 | None:intergenic | 40.0% | |
| !! | AACCACTGTTTCTGGTTACT+TGG | + | chr7.3:34911967-34911986 | MS.gene071033:CDS | 40.0% |
| !! | ACTCATAGTTTGTTGCGTCA+CGG | - | chr7.3:34911862-34911881 | None:intergenic | 40.0% |
| !! | GAAGACCAAAGTGTTGGTAT+GGG | + | chr7.3:34912021-34912040 | MS.gene071033:CDS | 40.0% |
| !! | GATCAGGTATTGAACAAGGT+TGG | + | chr7.3:34909122-34909141 | MS.gene071033:CDS | 40.0% |
| !! | GTTTCTGGTTACTTGGAGAA+AGG | + | chr7.3:34911974-34911993 | MS.gene071033:CDS | 40.0% |
| !! | TGAAGACCAAAGTGTTGGTA+TGG | + | chr7.3:34912020-34912039 | MS.gene071033:CDS | 40.0% |
| AAGAGAATCCAGGTCCAACT+TGG | + | chr7.3:34909535-34909554 | MS.gene071033:intron | 45.0% | |
| AGGTGACAGCTTGATTCCAA+CGG | - | chr7.3:34910117-34910136 | None:intergenic | 45.0% | |
| CTCCAAGTAACCAGAAACAG+TGG | - | chr7.3:34911972-34911991 | None:intergenic | 45.0% | |
| GACAGAGTTGAGTTCCTTGT+TGG | - | chr7.3:34909171-34909190 | None:intergenic | 45.0% | |
| GCCATTAACAGAGTTGCTGA+AGG | + | chr7.3:34911808-34911827 | MS.gene071033:CDS | 45.0% | |
| GGCATAAACATGTGAAGCGT+TGG | + | chr7.3:34910008-34910027 | MS.gene071033:intron | 45.0% | |
| GGCGGTGTAACTAGTAAACT+AGG | + | chr7.3:34909883-34909902 | MS.gene071033:intron | 45.0% | |
| GGCTTAAAAACTTGGAGTCC+TGG | - | chr7.3:34909976-34909995 | None:intergenic | 45.0% | |
| GGGTATGAAGACCAAAGTGT+TGG | + | chr7.3:34912015-34912034 | MS.gene071033:CDS | 45.0% | |
| GTTCAGCAAGAAAGCCAACA+AGG | + | chr7.3:34909154-34909173 | MS.gene071033:CDS | 45.0% | |
| GTTTATGCCGCTAGATTGGT+AGG | - | chr7.3:34909997-34910016 | None:intergenic | 45.0% | |
| TACATTTAGCCTGATGGCAG+TGG | - | chr7.3:34910491-34910510 | None:intergenic | 45.0% | |
| TAGCCTACTTCACACACTTG+AGG | - | chr7.3:34911920-34911939 | None:intergenic | 45.0% | |
| TCACGGGGAAAGATTCCTAT+TGG | - | chr7.3:34911845-34911864 | None:intergenic | 45.0% | |
| TCTGTGACTGAAGAGAATCC+AGG | + | chr7.3:34909525-34909544 | MS.gene071033:intron | 45.0% | |
| TGGGGGAGAACTGCAAAATT+TGG | + | chr7.3:34909789-34909808 | MS.gene071033:intron | 45.0% | |
| TTGAGATCGTACGACCAAGT+TGG | - | chr7.3:34909552-34909571 | None:intergenic | 45.0% | |
| !! | CATGTGAAGCGTTGGTTTGT+TGG | + | chr7.3:34910016-34910035 | MS.gene071033:intron | 45.0% |
| !! | CTCATAGTTTGTTGCGTCAC+GGG | - | chr7.3:34911861-34911880 | None:intergenic | 45.0% |
| !! | TCATAGTTTGTTGCGTCACG+GGG | - | chr7.3:34911860-34911879 | None:intergenic | 45.0% |
| !!! | ACATTTTGGTTGTGATCGGG+AGG | + | chr7.3:34909858-34909877 | MS.gene071033:intron | 45.0% |
| !!! | ATTTTGGTTGTGATCGGGAG+GGG | + | chr7.3:34909860-34909879 | MS.gene071033:intron | 45.0% |
| !!! | CATTTTGGTTGTGATCGGGA+GGG | + | chr7.3:34909859-34909878 | MS.gene071033:intron | 45.0% |
| !!! | TGTTCTTTTGGGATTCTCCC+TGG | + | chr7.3:34909700-34909719 | MS.gene071033:intron | 45.0% |
| !!! | ATAAATAAATAAAATTTTTG+GGG | + | chr7.3:34909771-34909790 | MS.gene071033:intron | 5.0% |
| AGTTACCGCCATTACATCCG+AGG | + | chr7.3:34912048-34912067 | MS.gene071033:CDS | 50.0% | |
| CGCTTCACAACCACTGTTTC+TGG | + | chr7.3:34911959-34911978 | MS.gene071033:CDS | 50.0% | |
| CTTTGGTCCCTCGGATGTAA+TGG | - | chr7.3:34912059-34912078 | None:intergenic | 50.0% | |
| GCATCGAAGGAGGAACCAAA+TGG | + | chr7.3:34911301-34911320 | MS.gene071033:CDS | 50.0% | |
| GGTGACAGCTTGATTCCAAC+GGG | - | chr7.3:34910116-34910135 | None:intergenic | 50.0% | |
| GTTACCGCCATTACATCCGA+GGG | + | chr7.3:34912049-34912068 | MS.gene071033:CDS | 50.0% | |
| ! | AAAAAGGGGGGTGTAGCAGT+AGG | - | chr7.3:34909227-34909246 | None:intergenic | 50.0% |
| ! | AAAAGGGGGGTGTAGCAGTA+GGG | - | chr7.3:34909226-34909245 | None:intergenic | 50.0% |
| ! | TCTCTGTCAAGCAGCATCGA+AGG | + | chr7.3:34911288-34911307 | MS.gene071033:CDS | 50.0% |
| !! | TTTTGGTTGTGATCGGGAGG+GGG | + | chr7.3:34909861-34909880 | MS.gene071033:intron | 50.0% |
| AGTAAAGAGGGGCTACCCGT+TGG | + | chr7.3:34910098-34910117 | MS.gene071033:intron | 55.0% | |
| CCAAAGCTGCACTTCACTGC+TGG | + | chr7.3:34912073-34912092 | MS.gene071033:CDS | 55.0% | |
| CCAGCAGTGAAGTGCAGCTT+TGG | - | chr7.3:34912076-34912095 | None:intergenic | 55.0% | |
| CGAAGGAGGAACCAAATGGC+TGG | + | chr7.3:34911305-34911324 | MS.gene071033:CDS | 55.0% | |
| TGGTCCCTCGGATGTAATGG+CGG | - | chr7.3:34912056-34912075 | None:intergenic | 55.0% | |
| TTTGGTTGTGATCGGGAGGG+GGG | + | chr7.3:34909862-34909881 | MS.gene071033:intron | 55.0% | |
| ! | CTGTCAAGCAGCATCGAAGG+AGG | + | chr7.3:34911291-34911310 | MS.gene071033:CDS | 55.0% |
| ! | GAAGTGCAGCTTTGGTCCCT+CGG | - | chr7.3:34912068-34912087 | None:intergenic | 55.0% |
| ! | TCGTACGACCAAGTTGGACC+TGG | - | chr7.3:34909546-34909565 | None:intergenic | 55.0% |
| ! | TGGCGTTGGGCACAGGATTA+GGG | + | chr7.3:34910779-34910798 | MS.gene071033:intron | 55.0% |
| ! | TTGGCGTTGGGCACAGGATT+AGG | + | chr7.3:34910778-34910797 | MS.gene071033:intron | 55.0% |
| ! | GAGACTTTGGCGTTGGGCAC+AGG | + | chr7.3:34910772-34910791 | MS.gene071033:intron | 60.0% |
| GGTTGTGATCGGGAGGGGGG+CGG | + | chr7.3:34909865-34909884 | MS.gene071033:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 34909119 | 34912165 | 34909119 | ID=MS.gene071033 |
| chr7.3 | mRNA | 34909119 | 34912165 | 34909119 | ID=MS.gene071033.t1;Parent=MS.gene071033 |
| chr7.3 | exon | 34909119 | 34909205 | 34909119 | ID=MS.gene071033.t1.exon1;Parent=MS.gene071033.t1 |
| chr7.3 | CDS | 34909119 | 34909205 | 34909119 | ID=cds.MS.gene071033.t1;Parent=MS.gene071033.t1 |
| chr7.3 | exon | 34911288 | 34911342 | 34911288 | ID=MS.gene071033.t1.exon2;Parent=MS.gene071033.t1 |
| chr7.3 | CDS | 34911288 | 34911342 | 34911288 | ID=cds.MS.gene071033.t1;Parent=MS.gene071033.t1 |
| chr7.3 | exon | 34911795 | 34912165 | 34911795 | ID=MS.gene071033.t1.exon3;Parent=MS.gene071033.t1 |
| chr7.3 | CDS | 34911795 | 34912165 | 34911795 | ID=cds.MS.gene071033.t1;Parent=MS.gene071033.t1 |
| Gene Sequence |
| Protein sequence |
