Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95675.t1 | XP_003623361.1 | 87.6 | 170 | 3 | 1 | 1 | 152 | 1 | 170 | 4.80E-75 | 290.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95675.t1 | Q9M015 | 62.9 | 170 | 45 | 1 | 1 | 152 | 1 | 170 | 4.1e-59 | 228.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95675.t1 | G7KT78 | 87.6 | 170 | 3 | 1 | 1 | 152 | 1 | 170 | 3.4e-75 | 290.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene95675 | 0.829466 | 5.07E-55 | -1.69E-46 |
| MS.gene051328 | MS.gene95675 | 0.802442 | 5.60E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene95675 | 0.800532 | 1.38E-48 | -1.69E-46 |
| MS.gene051757 | MS.gene95675 | 0.815397 | 9.44E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene95675 | 0.815195 | 1.05E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene95675 | 0.809817 | 1.57E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene95675 | 0.800832 | 1.20E-48 | -1.69E-46 |
| MS.gene055623 | MS.gene95675 | 0.800466 | 1.42E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene95675 | 0.80479 | 1.82E-49 | -1.69E-46 |
| MS.gene059151 | MS.gene95675 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene95675 | 0.800833 | 1.20E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95675 | MS.gene33453 | PPI |
| MS.gene95675 | MS.gene85907 | PPI |
| MS.gene95675 | MS.gene069002 | PPI |
| MS.gene53126 | MS.gene95675 | PPI |
| MS.gene95675 | MS.gene99505 | PPI |
| MS.gene95675 | MS.gene052793 | PPI |
| MS.gene95675 | MS.gene071033 | PPI |
| MS.gene95675 | MS.gene33706 | PPI |
| MS.gene99505 | MS.gene95675 | PPI |
| MS.gene33706 | MS.gene95675 | PPI |
| MS.gene95675 | MS.gene55328 | PPI |
| MS.gene95675 | MS.gene93374 | PPI |
| MS.gene95675 | MS.gene78559 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95675.t1 | MTR_7g070000 | 87.647 | 170 | 3 | 1 | 1 | 152 | 1 | 170 | 2.42e-103 | 293 |
| MS.gene95675.t1 | MTR_4g014490 | 74.118 | 170 | 26 | 1 | 1 | 152 | 1 | 170 | 1.38e-86 | 251 |
| MS.gene95675.t1 | MTR_5g043190 | 43.889 | 180 | 73 | 3 | 1 | 152 | 1 | 180 | 8.95e-47 | 150 |
| MS.gene95675.t1 | MTR_4g109140 | 42.529 | 174 | 78 | 3 | 1 | 152 | 1 | 174 | 5.36e-42 | 138 |
| MS.gene95675.t1 | MTR_7g108775 | 34.831 | 89 | 56 | 2 | 48 | 135 | 43 | 130 | 7.32e-12 | 60.1 |
| MS.gene95675.t1 | MTR_7g108775 | 36.471 | 85 | 52 | 2 | 48 | 131 | 43 | 126 | 1.23e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95675.t1 | AT3G08890 | 71.176 | 170 | 31 | 1 | 1 | 152 | 1 | 170 | 1.28e-87 | 253 |
| MS.gene95675.t1 | AT3G08890 | 71.176 | 170 | 31 | 1 | 1 | 152 | 1 | 170 | 1.28e-87 | 253 |
| MS.gene95675.t1 | AT5G37070 | 70.000 | 170 | 33 | 1 | 1 | 152 | 1 | 170 | 3.24e-84 | 244 |
| MS.gene95675.t1 | AT5G01610 | 62.941 | 170 | 45 | 1 | 1 | 152 | 1 | 170 | 8.36e-78 | 228 |
| MS.gene95675.t1 | AT5G01610 | 62.941 | 170 | 45 | 1 | 1 | 152 | 1 | 170 | 8.36e-78 | 228 |
| MS.gene95675.t1 | AT2G03350 | 43.452 | 168 | 73 | 3 | 7 | 152 | 12 | 179 | 5.14e-41 | 135 |
Find 38 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTCACAACCACTGTTTC+TGG | 0.188225 | 7.4:+33798548 | MS.gene95675:CDS |
| TGGCTCGTCAACAAATTAAA+AGG | 0.258287 | 7.4:+33797781 | MS.gene95675:CDS |
| TGAACAAGGTTGGATCTTAC+TGG | 0.286424 | 7.4:+33795696 | MS.gene95675:CDS |
| AACCACTGTTTCTGGTTACT+TGG | 0.327922 | 7.4:+33798556 | MS.gene95675:CDS |
| CTCATAGTTTGTTGCGTCTC+GGG | 0.330865 | 7.4:-33798447 | None:intergenic |
| AGGAAAGCTAGCTGATATAG+AGG | 0.335487 | 7.4:+33798583 | MS.gene95675:CDS |
| TAATTTGTTGACGAGCCATT+TGG | 0.400342 | 7.4:-33797776 | None:intergenic |
| GACAGAGTTGAGTTCCTTGT+TGG | 0.400423 | 7.4:-33795732 | None:intergenic |
| CCAGCAGTGAAGTGCAGCTT+TGG | 0.409039 | 7.4:-33798662 | None:intergenic |
| CTTTGGTCCCTCGGATGTAA+TGG | 0.437677 | 7.4:-33798645 | None:intergenic |
| GTTTCTGGTTACTTGGAGAA+AGG | 0.453263 | 7.4:+33798563 | MS.gene95675:CDS |
| GCATGAAGAAAACAAGGAAA+AGG | 0.453741 | 7.4:+33798684 | MS.gene95675:CDS |
| ACTCATAGTTTGTTGCGTCT+CGG | 0.467165 | 7.4:-33798448 | None:intergenic |
| CCAAAGCTGCACTTCACTGC+TGG | 0.476094 | 7.4:+33798662 | MS.gene95675:CDS |
| TCACTGTCAAGCAGCATTGA+AGG | 0.491753 | 7.4:+33797748 | MS.gene95675:CDS |
| ATTCCTCAAGTGTGTGAAGT+AGG | 0.513172 | 7.4:+33798503 | MS.gene95675:CDS |
| GAAGTGCAGCTTTGGTCCCT+CGG | 0.517935 | 7.4:-33798654 | None:intergenic |
| CATGAAGAAAACAAGGAAAA+GGG | 0.522722 | 7.4:+33798685 | MS.gene95675:CDS |
| TTTCACCCACACCAACACTT+TGG | 0.523358 | 7.4:-33798615 | None:intergenic |
| GATCAGGTATTGAACAAGGT+TGG | 0.526839 | 7.4:+33795686 | MS.gene95675:CDS |
| TCTGTCTGGGTGAATGGATC+AGG | 0.533164 | 7.4:+33795670 | None:intergenic |
| CTGCTGGCATGAAGAAAACA+AGG | 0.556882 | 7.4:+33798678 | MS.gene95675:CDS |
| GCATATGAAGTTTCTAGAGA+TGG | 0.564091 | 7.4:+33798710 | MS.gene95675:CDS |
| TCATAGTTTGTTGCGTCTCG+GGG | 0.579770 | 7.4:-33798446 | None:intergenic |
| GGAAAGCTAGCTGATATAGA+GGG | 0.613066 | 7.4:+33798584 | MS.gene95675:CDS |
| AACAAGGAACTCAACTCTGT+CGG | 0.617344 | 7.4:+33795734 | MS.gene95675:CDS |
| TGAAGACCAAAGTGTTGGTG+TGG | 0.617459 | 7.4:+33798609 | MS.gene95675:CDS |
| GTTCAGCAAGAAAGCCAACA+AGG | 0.625594 | 7.4:+33795718 | MS.gene95675:CDS |
| TAGCCTACTTCACACACTTG+AGG | 0.632117 | 7.4:-33798506 | None:intergenic |
| GCATTGAAGGAGGAACCAAA+TGG | 0.635369 | 7.4:+33797761 | MS.gene95675:CDS |
| GGGTATGAAGACCAAAGTGT+TGG | 0.639465 | 7.4:+33798604 | MS.gene95675:CDS |
| CTCCAAGTAACCAGAAACAG+TGG | 0.641005 | 7.4:-33798558 | None:intergenic |
| TGGTCCCTCGGATGTAATGG+CGG | 0.643277 | 7.4:-33798642 | None:intergenic |
| CTGTCAAGCAGCATTGAAGG+AGG | 0.660543 | 7.4:+33797751 | MS.gene95675:CDS |
| AGTTACCGCCATTACATCCG+AGG | 0.662266 | 7.4:+33798637 | MS.gene95675:CDS |
| AATGGATCAGGTATTGAACA+AGG | 0.667362 | 7.4:+33795682 | None:intergenic |
| GTTACCGCCATTACATCCGA+GGG | 0.676710 | 7.4:+33798638 | MS.gene95675:CDS |
| GAAGACCAAAGTGTTGGTGT+GGG | 0.684806 | 7.4:+33798610 | MS.gene95675:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATAAATAAATTTTTT+GGG | + | chr7.4:33796316-33796335 | MS.gene95675:intron | 0.0% |
| !!! | TTATAAATAAATAAATTTTT+TGG | + | chr7.4:33796315-33796334 | MS.gene95675:intron | 0.0% |
| !! | AAATAAAAAAAGAGTAAAAA+GGG | - | chr7.4:33795807-33795826 | None:intergenic | 10.0% |
| !! | TAGATTATTTAATGATTATT+TGG | + | chr7.4:33796131-33796150 | MS.gene95675:intron | 10.0% |
| !!! | TAAATAAATAAATTTTTTGG+GGG | + | chr7.4:33796318-33796337 | MS.gene95675:intron | 10.0% |
| !! | AATAAAAAAAGAGTAAAAAG+GGG | - | chr7.4:33795806-33795825 | None:intergenic | 15.0% |
| !! | AATAAAGATAATATAAGCTA+TGG | + | chr7.4:33798196-33798215 | MS.gene95675:intron | 15.0% |
| !! | CAAATAAAAAAAGAGTAAAA+AGG | - | chr7.4:33795808-33795827 | None:intergenic | 15.0% |
| !! | TTTAAATTCTACTTTGATTA+AGG | + | chr7.4:33797885-33797904 | MS.gene95675:intron | 15.0% |
| !! | ATAAAAAAAGAGTAAAAAGG+GGG | - | chr7.4:33795805-33795824 | None:intergenic | 20.0% |
| !! | ATAAACAGTTTAATTAAGCA+TGG | + | chr7.4:33797918-33797937 | MS.gene95675:intron | 20.0% |
| !! | ATGATTTACATTATCAGTAA+AGG | - | chr7.4:33797618-33797637 | None:intergenic | 20.0% |
| !! | ATTAAACTGTTTATCTAAAC+AGG | - | chr7.4:33797912-33797931 | None:intergenic | 20.0% |
| !! | CAAAAATATAGTTACTACTA+CGG | - | chr7.4:33796970-33796989 | None:intergenic | 20.0% |
| !! | TAGATCATAGAATATTTCTT+TGG | + | chr7.4:33797549-33797568 | MS.gene95675:intron | 20.0% |
| !! | TGATTTACATTATCAGTAAA+GGG | - | chr7.4:33797617-33797636 | None:intergenic | 20.0% |
| !! | TTAAACTGTTTATCTAAACA+GGG | - | chr7.4:33797911-33797930 | None:intergenic | 20.0% |
| !! | TTGGAAGATTAAATTTCATA+CGG | + | chr7.4:33796285-33796304 | MS.gene95675:intron | 20.0% |
| !!! | ACTTATTTGAACTTATTTTC+TGG | - | chr7.4:33798309-33798328 | None:intergenic | 20.0% |
| !!! | TATTTTTCATGCATAATTTG+TGG | + | chr7.4:33797160-33797179 | MS.gene95675:intron | 20.0% |
| !!! | TTGGTTTATTGATTAAAAAC+AGG | + | chr7.4:33796567-33796586 | MS.gene95675:intron | 20.0% |
| !!! | TTTTTCCTCTTTTTTTTAGT+TGG | + | chr7.4:33795844-33795863 | MS.gene95675:intron | 20.0% |
| ! | AAATGTCCAGTAAAGATAAA+TGG | - | chr7.4:33797447-33797466 | None:intergenic | 25.0% |
| ! | AACATTAAAAAATCAATCCG+AGG | + | chr7.4:33797261-33797280 | MS.gene95675:intron | 25.0% |
| ! | AATAGAAATTAGAAAGCCTA+AGG | + | chr7.4:33797191-33797210 | MS.gene95675:intron | 25.0% |
| ! | ACATGTTAGAGTGTAAAATT+AGG | - | chr7.4:33798346-33798365 | None:intergenic | 25.0% |
| ! | ACTCATAAAAAGATTGATCA+AGG | - | chr7.4:33796691-33796710 | None:intergenic | 25.0% |
| ! | AGTATCCAACTAAAAAAAAG+AGG | - | chr7.4:33795852-33795871 | None:intergenic | 25.0% |
| ! | ATATATTTGACGTCAATCTT+GGG | + | chr7.4:33796871-33796890 | MS.gene95675:intron | 25.0% |
| ! | ATTTGTCCATTTATCTTTAC+TGG | + | chr7.4:33797438-33797457 | MS.gene95675:intron | 25.0% |
| ! | CATGTTAGAGTGTAAAATTA+GGG | - | chr7.4:33798345-33798364 | None:intergenic | 25.0% |
| ! | GATTTACATTATCAGTAAAG+GGG | - | chr7.4:33797616-33797635 | None:intergenic | 25.0% |
| ! | TAAAAAAAGAGTAAAAAGGG+GGG | - | chr7.4:33795804-33795823 | None:intergenic | 25.0% |
| ! | TAAAATAAGCTAATCCAAAC+AGG | - | chr7.4:33797944-33797963 | None:intergenic | 25.0% |
| ! | TATTTGTCGAGATTTAAATC+TGG | + | chr7.4:33796045-33796064 | MS.gene95675:intron | 25.0% |
| ! | TTATATTAACACTCTTCCTT+TGG | + | chr7.4:33797716-33797735 | MS.gene95675:intron | 25.0% |
| !! | GATAATGACAATGACAATTT+TGG | + | chr7.4:33796391-33796410 | MS.gene95675:intron | 25.0% |
| !! | TGAAACTTTTCACTTTGTAT+GGG | + | chr7.4:33797466-33797485 | MS.gene95675:intron | 25.0% |
| !! | TTATACATCTGTGATTTTAG+AGG | + | chr7.4:33796456-33796475 | MS.gene95675:intron | 25.0% |
| !! | TTGAAACTTTTCACTTTGTA+TGG | + | chr7.4:33797465-33797484 | MS.gene95675:intron | 25.0% |
| !! | TTTTTATGTGTTTCTCAATC+AGG | + | chr7.4:33797826-33797845 | MS.gene95675:intron | 25.0% |
| !!! | ATAAATAAATTTTTTGGGGG+AGG | + | chr7.4:33796321-33796340 | MS.gene95675:intron | 25.0% |
| !!! | CGGATTGATTTTTTAATGTT+GGG | - | chr7.4:33797261-33797280 | None:intergenic | 25.0% |
| !!! | TCGGATTGATTTTTTAATGT+TGG | - | chr7.4:33797262-33797281 | None:intergenic | 25.0% |
| AAAAAAAGAGTAAAAAGGGG+GGG | - | chr7.4:33795803-33795822 | None:intergenic | 30.0% | |
| AAAAACAGGCGATAAAAAAG+TGG | + | chr7.4:33796581-33796600 | MS.gene95675:intron | 30.0% | |
| AAAACAGGCGATAAAAAAGT+GGG | + | chr7.4:33796582-33796601 | MS.gene95675:intron | 30.0% | |
| AAAATAAGCTCAAGTCAAAC+GGG | + | chr7.4:33798123-33798142 | MS.gene95675:intron | 30.0% | |
| AAAGTCTCACATTTATCCTT+AGG | - | chr7.4:33797210-33797229 | None:intergenic | 30.0% | |
| AAATCATTTGTGAGTCTTGA+GGG | + | chr7.4:33797631-33797650 | MS.gene95675:intron | 30.0% | |
| AACAAAGAACTAGAAAACCA+AGG | - | chr7.4:33797526-33797545 | None:intergenic | 30.0% | |
| ACAGTGACTAAAAAAACCAA+AGG | - | chr7.4:33797735-33797754 | None:intergenic | 30.0% | |
| ATTTCTTTGGTCTGAATATG+AGG | + | chr7.4:33797562-33797581 | MS.gene95675:intron | 30.0% | |
| CAAAATAAGCTCAAGTCAAA+CGG | + | chr7.4:33798122-33798141 | MS.gene95675:intron | 30.0% | |
| CATGAAGAAAACAAGGAAAA+GGG | + | chr7.4:33798685-33798704 | MS.gene95675:CDS | 30.0% | |
| CCAATTAAGTTTCATATCCA+GGG | - | chr7.4:33796269-33796288 | None:intergenic | 30.0% | |
| CCTGGTACATAAACATAAAT+CGG | - | chr7.4:33796496-33796515 | None:intergenic | 30.0% | |
| CTACATATGAGTTTACCAAT+AGG | + | chr7.4:33796774-33796793 | MS.gene95675:intron | 30.0% | |
| CTGGTACATAAACATAAATC+GGG | - | chr7.4:33796495-33796514 | None:intergenic | 30.0% | |
| CTTTGTATGGGAAAATATGT+TGG | + | chr7.4:33797478-33797497 | MS.gene95675:intron | 30.0% | |
| GATATATTTGACGTCAATCT+TGG | + | chr7.4:33796870-33796889 | MS.gene95675:intron | 30.0% | |
| TAAATCATTTGTGAGTCTTG+AGG | + | chr7.4:33797630-33797649 | MS.gene95675:intron | 30.0% | |
| TAAGAATCATAAGCAAGACA+TGG | - | chr7.4:33795892-33795911 | None:intergenic | 30.0% | |
| TAAGGATAAATGTGAGACTT+TGG | + | chr7.4:33797209-33797228 | MS.gene95675:intron | 30.0% | |
| TATCAAAAAACAGGAGAACA+AGG | - | chr7.4:33796845-33796864 | None:intergenic | 30.0% | |
| TCAAAAGAGAAATACAGTCA+CGG | - | chr7.4:33796751-33796770 | None:intergenic | 30.0% | |
| TCCAATTAAGTTTCATATCC+AGG | - | chr7.4:33796270-33796289 | None:intergenic | 30.0% | |
| TCGAATAAACTATTCGACAA+GGG | - | chr7.4:33796813-33796832 | None:intergenic | 30.0% | |
| ! | AAATATTTTGCCTCTGTTGT+AGG | + | chr7.4:33797065-33797084 | MS.gene95675:intron | 30.0% |
| ! | GAATCGAGATATGTTCTTTT+AGG | + | chr7.4:33796238-33796257 | MS.gene95675:intron | 30.0% |
| ! | TTCAACATTTGCTAGTCTAA+CGG | - | chr7.4:33797668-33797687 | None:intergenic | 30.0% |
| ! | TTTTACACTCTAACATGTTG+AGG | + | chr7.4:33798348-33798367 | MS.gene95675:intron | 30.0% |
| !! | AGTGATTGATTTGAATTCGA+TGG | + | chr7.4:33796170-33796189 | MS.gene95675:intron | 30.0% |
| !! | CTCAGCTATCTGATTTTAAT+TGG | + | chr7.4:33796001-33796020 | MS.gene95675:intron | 30.0% |
| !! | GTAAAAGTATTAAGTAGTGC+TGG | + | chr7.4:33796722-33796741 | MS.gene95675:intron | 30.0% |
| !!! | AGCTATCTGATTTTAATTGG+TGG | + | chr7.4:33796004-33796023 | MS.gene95675:intron | 30.0% |
| !!! | ATGACAATTTTGGTTGTGAT+TGG | + | chr7.4:33796401-33796420 | MS.gene95675:intron | 30.0% |
| !!! | ATGTCATAGGCTATTTTTGT+TGG | + | chr7.4:33798253-33798272 | MS.gene95675:intron | 30.0% |
| !!! | GCATGAATTCTAGAATGTTT+TGG | + | chr7.4:33796619-33796638 | MS.gene95675:intron | 30.0% |
| !!! | TGACAATTTTGGTTGTGATT+GGG | + | chr7.4:33796402-33796421 | MS.gene95675:intron | 30.0% |
| !!! | TTGGTTTTCTAGTTCTTTGT+TGG | + | chr7.4:33797525-33797544 | MS.gene95675:intron | 30.0% |
| AAATAAGCTCAAGTCAAACG+GGG | + | chr7.4:33798124-33798143 | MS.gene95675:intron | 35.0% | |
| ACAACTTGTAGACATGTCAT+AGG | + | chr7.4:33798240-33798259 | MS.gene95675:intron | 35.0% | |
| ACCAATGCTCTATGTGTTTA+TGG | - | chr7.4:33796552-33796571 | None:intergenic | 35.0% | |
| AGTAGATTTCGTTGCTTGAT+TGG | + | chr7.4:33797689-33797708 | MS.gene95675:intron | 35.0% | |
| CCCTGGATATGAAACTTAAT+TGG | + | chr7.4:33796266-33796285 | MS.gene95675:intron | 35.0% | |
| CCGATTTATGTTTATGTACC+AGG | + | chr7.4:33796493-33796512 | MS.gene95675:intron | 35.0% | |
| CTCGAATAAACTATTCGACA+AGG | - | chr7.4:33796814-33796833 | None:intergenic | 35.0% | |
| GCATGAAGAAAACAAGGAAA+AGG | + | chr7.4:33798684-33798703 | MS.gene95675:CDS | 35.0% | |
| TAAATGGACAAATACCTCTC+AGG | - | chr7.4:33797431-33797450 | None:intergenic | 35.0% | |
| TAATGACTTAACAACTGCCT+TGG | + | chr7.4:33797506-33797525 | MS.gene95675:intron | 35.0% | |
| TATCCCTCGTATCAAAAAAC+AGG | - | chr7.4:33796854-33796873 | None:intergenic | 35.0% | |
| TGGCTCGTCAACAAATTAAA+AGG | + | chr7.4:33797781-33797800 | MS.gene95675:CDS | 35.0% | |
| TTAATTAAGCATGGCCTGTT+TGG | + | chr7.4:33797927-33797946 | MS.gene95675:intron | 35.0% | |
| TTTGGTCTGAATATGAGGAA+AGG | + | chr7.4:33797567-33797586 | MS.gene95675:intron | 35.0% | |
| ! | AAGGAGTATGATCTACCAAT+AGG | + | chr7.4:33798416-33798435 | MS.gene95675:intron | 35.0% |
| ! | GCATATGAAGTTTCTAGAGA+TGG | + | chr7.4:33798710-33798729 | MS.gene95675:CDS | 35.0% |
| ! | TATACAGACAGATTTTGCCT+CGG | - | chr7.4:33797281-33797300 | None:intergenic | 35.0% |
| !! | AGTGGATTGATTAAATTGCG+AGG | - | chr7.4:33796926-33796945 | None:intergenic | 35.0% |
| !! | ATGTTGAGGTATCATTTTGC+AGG | + | chr7.4:33798362-33798381 | MS.gene95675:intron | 35.0% |
| !! | TAATTTGTTGACGAGCCATT+TGG | - | chr7.4:33797779-33797798 | None:intergenic | 35.0% |
| !!! | AATTTTGGTTGTGATTGGGA+GGG | + | chr7.4:33796406-33796425 | MS.gene95675:intron | 35.0% |
| !!! | TCTCCTGTTTTTTGATACGA+GGG | + | chr7.4:33796848-33796867 | MS.gene95675:intron | 35.0% |
| !!! | TTCTCCTGTTTTTTGATACG+AGG | + | chr7.4:33796847-33796866 | MS.gene95675:intron | 35.0% |
| AAATGTGAGACTTTGGCGTT+TGG | + | chr7.4:33797216-33797235 | MS.gene95675:intron | 40.0% | |
| AACAAGGAACTCAACTCTGT+CGG | + | chr7.4:33795734-33795753 | MS.gene95675:CDS | 40.0% | |
| ACACACACATGCATGTACTT+TGG | + | chr7.4:33795957-33795976 | MS.gene95675:intron | 40.0% | |
| ACTCCAATATCCTACAACAG+AGG | - | chr7.4:33797078-33797097 | None:intergenic | 40.0% | |
| AGGAAAGCTAGCTGATATAG+AGG | + | chr7.4:33798583-33798602 | MS.gene95675:CDS | 40.0% | |
| ATTCCTCAAGTGTGTGAAGT+AGG | + | chr7.4:33798503-33798522 | MS.gene95675:CDS | 40.0% | |
| ATTCTCTTCACGAAGAAAGC+CGG | - | chr7.4:33796072-33796091 | None:intergenic | 40.0% | |
| ATTTGACGTCAATCTTGGGA+AGG | + | chr7.4:33796875-33796894 | MS.gene95675:intron | 40.0% | |
| CACACACATGCATGTACTTT+GGG | + | chr7.4:33795958-33795977 | MS.gene95675:intron | 40.0% | |
| GCCATAAACACATAGAGCAT+TGG | + | chr7.4:33796548-33796567 | MS.gene95675:intron | 40.0% | |
| GGAAAGCTAGCTGATATAGA+GGG | + | chr7.4:33798584-33798603 | MS.gene95675:CDS | 40.0% | |
| GGAAATCAACGAACACCTAT+TGG | - | chr7.4:33796792-33796811 | None:intergenic | 40.0% | |
| GGATTGATTAAATTGCGAGG+AGG | - | chr7.4:33796923-33796942 | None:intergenic | 40.0% | |
| GGTTTGTGCATCAGTAAAGA+GGG | + | chr7.4:33796640-33796659 | MS.gene95675:intron | 40.0% | |
| GTCGAGATTTAAATCTGGAC+CGG | + | chr7.4:33796050-33796069 | MS.gene95675:intron | 40.0% | |
| GTTTGTGCATCAGTAAAGAG+GGG | + | chr7.4:33796641-33796660 | MS.gene95675:intron | 40.0% | |
| TCCTTCAGCAACTCTGTTAA+TGG | - | chr7.4:33798401-33798420 | None:intergenic | 40.0% | |
| TGAACAAGGTTGGATCTTAC+TGG | + | chr7.4:33795696-33795715 | MS.gene95675:CDS | 40.0% | |
| TTAATCAATCCACTGCCATC+AGG | + | chr7.4:33796932-33796951 | MS.gene95675:intron | 40.0% | |
| TTGCCTCTGTTGTAGGATAT+TGG | + | chr7.4:33797072-33797091 | MS.gene95675:intron | 40.0% | |
| TTTCTTCGTGAAGAGAATCC+AGG | + | chr7.4:33796074-33796093 | MS.gene95675:intron | 40.0% | |
| ! | GATTGGTCGGCTTAAAAATG+TGG | - | chr7.4:33796522-33796541 | None:intergenic | 40.0% |
| ! | TGGTTTGTGCATCAGTAAAG+AGG | + | chr7.4:33796639-33796658 | MS.gene95675:intron | 40.0% |
| ! | TTTTAAGCCGACCAATCTAG+CGG | + | chr7.4:33796525-33796544 | MS.gene95675:intron | 40.0% |
| !! | AACCACTGTTTCTGGTTACT+TGG | + | chr7.4:33798556-33798575 | MS.gene95675:CDS | 40.0% |
| !! | ACTCATAGTTTGTTGCGTCT+CGG | - | chr7.4:33798451-33798470 | None:intergenic | 40.0% |
| !! | GATCAGGTATTGAACAAGGT+TGG | + | chr7.4:33795686-33795705 | MS.gene95675:CDS | 40.0% |
| !! | GTTTCTGGTTACTTGGAGAA+AGG | + | chr7.4:33798563-33798582 | MS.gene95675:CDS | 40.0% |
| !!! | ATTTTGGTTGTGATTGGGAG+GGG | + | chr7.4:33796407-33796426 | MS.gene95675:intron | 40.0% |
| !!! | CAATTTTGGTTGTGATTGGG+AGG | + | chr7.4:33796405-33796424 | MS.gene95675:intron | 40.0% |
| !!! | TGTTCTTTTAGGATTCTCCC+TGG | + | chr7.4:33796249-33796268 | MS.gene95675:intron | 40.0% |
| AAGAGAATCCAGGTCCAACT+TGG | + | chr7.4:33796084-33796103 | MS.gene95675:intron | 45.0% | |
| CTCCAAGTAACCAGAAACAG+TGG | - | chr7.4:33798561-33798580 | None:intergenic | 45.0% | |
| CTGCTGGCATGAAGAAAACA+AGG | + | chr7.4:33798678-33798697 | MS.gene95675:CDS | 45.0% | |
| GACAGAGTTGAGTTCCTTGT+TGG | - | chr7.4:33795735-33795754 | None:intergenic | 45.0% | |
| GCATTGAAGGAGGAACCAAA+TGG | + | chr7.4:33797761-33797780 | MS.gene95675:CDS | 45.0% | |
| GCCATTAACAGAGTTGCTGA+AGG | + | chr7.4:33798397-33798416 | MS.gene95675:intron | 45.0% | |
| GGCTTAAAAATGTGGAGTCC+TGG | - | chr7.4:33796514-33796533 | None:intergenic | 45.0% | |
| GGGTATGAAGACCAAAGTGT+TGG | + | chr7.4:33798604-33798623 | MS.gene95675:CDS | 45.0% | |
| GTTCAGCAAGAAAGCCAACA+AGG | + | chr7.4:33795718-33795737 | MS.gene95675:CDS | 45.0% | |
| TACACTTATCCTGATGGCAG+TGG | - | chr7.4:33796944-33796963 | None:intergenic | 45.0% | |
| TAGCCTACTTCACACACTTG+AGG | - | chr7.4:33798509-33798528 | None:intergenic | 45.0% | |
| TCTCGGGGAAAGATTCCTAT+TGG | - | chr7.4:33798434-33798453 | None:intergenic | 45.0% | |
| TGGGGGAGGACTGTAAAATT+CGG | + | chr7.4:33796335-33796354 | MS.gene95675:intron | 45.0% | |
| TTGAGATCGTACGACCAAGT+TGG | - | chr7.4:33796101-33796120 | None:intergenic | 45.0% | |
| TTTAAGCCGACCAATCTAGC+GGG | + | chr7.4:33796526-33796545 | MS.gene95675:intron | 45.0% | |
| TTTCACCCACACCAACACTT+TGG | - | chr7.4:33798618-33798637 | None:intergenic | 45.0% | |
| ! | TCACTGTCAAGCAGCATTGA+AGG | + | chr7.4:33797748-33797767 | MS.gene95675:CDS | 45.0% |
| !! | CTCATAGTTTGTTGCGTCTC+GGG | - | chr7.4:33798450-33798469 | None:intergenic | 45.0% |
| !! | GAAGACCAAAGTGTTGGTGT+GGG | + | chr7.4:33798610-33798629 | MS.gene95675:CDS | 45.0% |
| !! | TCATAGTTTGTTGCGTCTCG+GGG | - | chr7.4:33798449-33798468 | None:intergenic | 45.0% |
| !! | TGAAGACCAAAGTGTTGGTG+TGG | + | chr7.4:33798609-33798628 | MS.gene95675:CDS | 45.0% |
| !! | TTTTGGTTGTGATTGGGAGG+GGG | + | chr7.4:33796408-33796427 | MS.gene95675:intron | 45.0% |
| !!! | ATAAATAAATAAATTTTTTG+GGG | + | chr7.4:33796317-33796336 | MS.gene95675:intron | 5.0% |
| !!! | ATATTATTTATAACTTTTTA+AGG | + | chr7.4:33798011-33798030 | MS.gene95675:intron | 5.0% |
| AGGTGACACCCTGATTCCAA+AGG | - | chr7.4:33796671-33796690 | None:intergenic | 50.0% | |
| AGTAAAGAGGGGCTACCCTT+TGG | + | chr7.4:33796652-33796671 | MS.gene95675:intron | 50.0% | |
| AGTTACCGCCATTACATCCG+AGG | + | chr7.4:33798637-33798656 | MS.gene95675:CDS | 50.0% | |
| CGCTTCACAACCACTGTTTC+TGG | + | chr7.4:33798548-33798567 | MS.gene95675:CDS | 50.0% | |
| CGGCACTACACTTATCCTGA+TGG | - | chr7.4:33796950-33796969 | None:intergenic | 50.0% | |
| CTTTGGTCCCTCGGATGTAA+TGG | - | chr7.4:33798648-33798667 | None:intergenic | 50.0% | |
| GGTGACACCCTGATTCCAAA+GGG | - | chr7.4:33796670-33796689 | None:intergenic | 50.0% | |
| GTGTTTATGGCCCGCTAGAT+TGG | - | chr7.4:33796539-33796558 | None:intergenic | 50.0% | |
| GTTACCGCCATTACATCCGA+GGG | + | chr7.4:33798638-33798657 | MS.gene95675:CDS | 50.0% | |
| TGACGTCAATCTTGGGAAGG+TGG | + | chr7.4:33796878-33796897 | MS.gene95675:intron | 50.0% | |
| TTATGGCCCGCTAGATTGGT+CGG | - | chr7.4:33796535-33796554 | None:intergenic | 50.0% | |
| TTTGGTTGTGATTGGGAGGG+GGG | + | chr7.4:33796409-33796428 | MS.gene95675:intron | 50.0% | |
| ! | CTGTCAAGCAGCATTGAAGG+AGG | + | chr7.4:33797751-33797770 | MS.gene95675:CDS | 50.0% |
| !!! | TTTTGAAGCTGACGCCTGAG+AGG | + | chr7.4:33797414-33797433 | MS.gene95675:intron | 50.0% |
| CCAAAGCTGCACTTCACTGC+TGG | + | chr7.4:33798662-33798681 | MS.gene95675:CDS | 55.0% | |
| CCAGCAGTGAAGTGCAGCTT+TGG | - | chr7.4:33798665-33798684 | None:intergenic | 55.0% | |
| GAGACTTTGGCGTTTGGCAC+AGG | + | chr7.4:33797222-33797241 | MS.gene95675:intron | 55.0% | |
| TGGTCCCTCGGATGTAATGG+CGG | - | chr7.4:33798645-33798664 | None:intergenic | 55.0% | |
| ! | AAAAGGGGGGGTGTAGCAGT+AGG | - | chr7.4:33795791-33795810 | None:intergenic | 55.0% |
| ! | AAAGGGGGGGTGTAGCAGTA+GGG | - | chr7.4:33795790-33795809 | None:intergenic | 55.0% |
| ! | GAAGTGCAGCTTTGGTCCCT+CGG | - | chr7.4:33798657-33798676 | None:intergenic | 55.0% |
| ! | TCGTACGACCAAGTTGGACC+TGG | - | chr7.4:33796095-33796114 | None:intergenic | 55.0% |
| !! | AGGGGCTACCCTTTGGAATC+AGG | + | chr7.4:33796659-33796678 | MS.gene95675:intron | 55.0% |
| !! | GGGGCTACCCTTTGGAATCA+GGG | + | chr7.4:33796660-33796679 | MS.gene95675:intron | 55.0% |
| GGTTGTGATTGGGAGGGGGG+AGG | + | chr7.4:33796412-33796431 | MS.gene95675:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 33795683 | 33798754 | 33795683 | ID=MS.gene95675 |
| chr7.4 | mRNA | 33795683 | 33798754 | 33795683 | ID=MS.gene95675.t1;Parent=MS.gene95675 |
| chr7.4 | exon | 33795683 | 33795769 | 33795683 | ID=MS.gene95675.t1.exon1;Parent=MS.gene95675.t1 |
| chr7.4 | CDS | 33795683 | 33795769 | 33795683 | ID=cds.MS.gene95675.t1;Parent=MS.gene95675.t1 |
| chr7.4 | exon | 33797748 | 33797802 | 33797748 | ID=MS.gene95675.t1.exon2;Parent=MS.gene95675.t1 |
| chr7.4 | CDS | 33797748 | 33797802 | 33797748 | ID=cds.MS.gene95675.t1;Parent=MS.gene95675.t1 |
| chr7.4 | exon | 33798438 | 33798754 | 33798438 | ID=MS.gene95675.t1.exon3;Parent=MS.gene95675.t1 |
| chr7.4 | CDS | 33798438 | 33798754 | 33798438 | ID=cds.MS.gene95675.t1;Parent=MS.gene95675.t1 |
| Gene Sequence |
| Protein sequence |
