Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33453.t1 | XP_003604558.1 | 98.8 | 170 | 2 | 0 | 1 | 170 | 1 | 170 | 1.20E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33453.t1 | Q9M015 | 74.7 | 170 | 43 | 0 | 1 | 170 | 1 | 170 | 2.1e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33453.t1 | G7JLS2 | 98.8 | 170 | 2 | 0 | 1 | 170 | 1 | 170 | 8.5e-91 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95675 | MS.gene33453 | PPI |
| MS.gene071033 | MS.gene33453 | PPI |
| MS.gene85907 | MS.gene33453 | PPI |
| MS.gene93374 | MS.gene33453 | PPI |
| MS.gene53126 | MS.gene33453 | PPI |
| MS.gene78559 | MS.gene33453 | PPI |
| MS.gene33453 | MS.gene55328 | PPI |
| MS.gene069002 | MS.gene33453 | PPI |
| MS.gene99505 | MS.gene33453 | PPI |
| MS.gene33706 | MS.gene33453 | PPI |
| MS.gene052793 | MS.gene33453 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33453.t1 | MTR_4g014490 | 98.824 | 170 | 2 | 0 | 1 | 170 | 1 | 170 | 4.42e-123 | 343 |
| MS.gene33453.t1 | MTR_7g070000 | 84.706 | 170 | 26 | 0 | 1 | 170 | 1 | 170 | 4.54e-105 | 298 |
| MS.gene33453.t1 | MTR_5g043190 | 51.205 | 166 | 78 | 1 | 8 | 170 | 15 | 180 | 8.37e-59 | 181 |
| MS.gene33453.t1 | MTR_4g109140 | 46.552 | 174 | 89 | 1 | 1 | 170 | 1 | 174 | 1.20e-54 | 171 |
| MS.gene33453.t1 | MTR_7g108775 | 35.354 | 99 | 62 | 2 | 56 | 153 | 33 | 130 | 1.45e-15 | 70.5 |
| MS.gene33453.t1 | MTR_7g108775 | 35.354 | 99 | 62 | 2 | 56 | 153 | 33 | 130 | 2.27e-15 | 70.5 |
| MS.gene33453.t1 | MTR_1g088250 | 28.421 | 95 | 67 | 1 | 56 | 149 | 26 | 120 | 6.28e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33453.t1 | AT3G08890 | 77.647 | 170 | 38 | 0 | 1 | 170 | 1 | 170 | 2.19e-100 | 286 |
| MS.gene33453.t1 | AT3G08890 | 77.647 | 170 | 38 | 0 | 1 | 170 | 1 | 170 | 2.19e-100 | 286 |
| MS.gene33453.t1 | AT5G37070 | 77.647 | 170 | 38 | 0 | 1 | 170 | 1 | 170 | 7.91e-98 | 280 |
| MS.gene33453.t1 | AT5G01610 | 74.706 | 170 | 43 | 0 | 1 | 170 | 1 | 170 | 2.92e-95 | 273 |
| MS.gene33453.t1 | AT5G01610 | 74.706 | 170 | 43 | 0 | 1 | 170 | 1 | 170 | 2.92e-95 | 273 |
| MS.gene33453.t1 | AT2G03350 | 49.390 | 164 | 80 | 1 | 7 | 167 | 12 | 175 | 2.80e-52 | 165 |
| MS.gene33453.t1 | AT1G02816 | 25.217 | 115 | 83 | 2 | 57 | 168 | 35 | 149 | 4.15e-13 | 63.9 |
| MS.gene33453.t1 | AT4G02370 | 27.368 | 95 | 68 | 1 | 56 | 149 | 34 | 128 | 4.70e-12 | 61.2 |
| MS.gene33453.t1 | AT4G02360 | 29.358 | 109 | 74 | 3 | 51 | 157 | 25 | 132 | 6.04e-12 | 60.8 |
Find 43 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCTTCACCACTGTTAC+TGG | 0.210400 | 4.2:-86714958 | MS.gene33453:CDS |
| CACCACTGTTACTGGTTATC+TGG | 0.249379 | 4.2:-86714950 | MS.gene33453:CDS |
| TGAAGACAAAAGTTATTATC+TGG | 0.261455 | 4.2:-86714897 | MS.gene33453:CDS |
| CTTTGATCCCTCGGAGAAAA+TGG | 0.272674 | 4.2:+86714861 | None:intergenic |
| GCCATTACCAGAGTTGTTAA+AGG | 0.295014 | 4.2:-86715109 | MS.gene33453:CDS |
| TGGTTGGTCAACAAAGTAAA+AGG | 0.300821 | 4.2:-86716816 | MS.gene33453:intron |
| TACTTTGTTGACCAACCATT+TGG | 0.339849 | 4.2:+86716821 | None:intergenic |
| GACGGAATTAAGCTCCTTGC+TGG | 0.370970 | 4.2:+86717972 | None:intergenic |
| TCAACAAGGTTGGATCCTAT+TGG | 0.402846 | 4.2:-86718008 | MS.gene33453:CDS |
| TCCTTTAACAACTCTGGTAA+TGG | 0.418016 | 4.2:+86715108 | None:intergenic |
| GGCTTTCTGATTGAACCAAT+AGG | 0.431334 | 4.2:+86717993 | None:intergenic |
| GGTCTGCGAAGTAGGCTATA+AGG | 0.432562 | 4.2:-86714995 | MS.gene33453:CDS |
| AAGGAGTATGATCTACCAAT+AGG | 0.443273 | 4.2:-86715090 | MS.gene33453:CDS |
| AGGAAAGCTAGCAGACATAG+AGG | 0.449690 | 4.2:-86714923 | MS.gene33453:CDS |
| ATTCCTCAGGTCTGCGAAGT+AGG | 0.457321 | 4.2:-86715003 | MS.gene33453:CDS |
| TCACGAGGAAAGATTCCTAT+TGG | 0.469668 | 4.2:+86715075 | None:intergenic |
| CACATGGAGCTTTGATCCCT+CGG | 0.480129 | 4.2:+86714852 | None:intergenic |
| GCTTGAAGTCTTCATTCCTC+AGG | 0.483186 | 4.2:-86715016 | MS.gene33453:CDS |
| TCAAAGCTCCATGTGACTGC+TGG | 0.495120 | 4.2:-86714844 | MS.gene33453:CDS |
| GATCAAGTATTCAACAAGGT+TGG | 0.497292 | 4.2:-86718018 | MS.gene33453:CDS |
| CGTAACATCATATGCTTCCC+TGG | 0.503981 | 4.2:+86714804 | None:intergenic |
| GAAGACAAAAGTTATTATCT+GGG | 0.508796 | 4.2:-86714896 | MS.gene33453:CDS |
| TCTTCATGCCAGCAGTCACA+TGG | 0.537299 | 4.2:+86714836 | None:intergenic |
| GTATCGAAGGCGGAACCAAA+TGG | 0.539035 | 4.2:-86716836 | MS.gene33453:CDS |
| GTTACTGGTTATCTGGAGAA+AGG | 0.540770 | 4.2:-86714943 | MS.gene33453:CDS |
| GCATATGATGTTACGAGAGA+TGG | 0.542619 | 4.2:-86714796 | MS.gene33453:CDS |
| TCATACTCCTTTAACAACTC+TGG | 0.548889 | 4.2:+86715102 | None:intergenic |
| TACATTGATTTCATCACCGA+CGG | 0.565687 | 4.2:+86717954 | None:intergenic |
| TACGAATTTAACGAAGAGAC+GGG | 0.578620 | 4.2:-86715042 | MS.gene33453:CDS |
| CTACGAATTTAACGAAGAGA+CGG | 0.579413 | 4.2:-86715043 | MS.gene33453:CDS |
| GCATGAAGAAAACAAGAACC+AGG | 0.584014 | 4.2:-86714822 | MS.gene33453:CDS |
| TCGTAGTTTGTTGCATCACG+AGG | 0.584895 | 4.2:+86715060 | None:intergenic |
| AGCAAGGAGCTTAATTCCGT+CGG | 0.601708 | 4.2:-86717970 | MS.gene33453:CDS |
| GGAAAGCTAGCAGACATAGA+GGG | 0.604204 | 4.2:-86714922 | MS.gene33453:CDS |
| CGAAGGCGGAACCAAATGGT+TGG | 0.621013 | 4.2:-86716832 | MS.gene33453:CDS |
| GTTCAATCAGAAAGCCAGCA+AGG | 0.622010 | 4.2:-86717986 | MS.gene33453:CDS |
| TCACTGTCGAACAGTATCGA+AGG | 0.655695 | 4.2:-86716849 | MS.gene33453:CDS |
| TAGCCTACTTCGCAGACCTG+AGG | 0.660590 | 4.2:+86715000 | None:intergenic |
| CTCCAGATAACCAGTAACAG+TGG | 0.669904 | 4.2:+86714948 | None:intergenic |
| CATGAAGAAAACAAGAACCA+GGG | 0.684808 | 4.2:-86714821 | MS.gene33453:CDS |
| AGTGGTGAAGAAACGCAAGA+CGG | 0.697268 | 4.2:+86714966 | None:intergenic |
| AATGGATCAAGTATTCAACA+AGG | 0.730089 | 4.2:-86718022 | MS.gene33453:CDS |
| CTGTCGAACAGTATCGAAGG+CGG | 0.747673 | 4.2:-86716846 | MS.gene33453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCAAAAAAAATTAATAATTT+TGG | + | chr4.2:86714927-86714946 | None:intergenic | 10.0% |
| !!! | CCAAAATTATTAATTTTTTT+TGG | - | chr4.2:86714924-86714943 | MS.gene33453:CDS | 10.0% |
| !! | AAAATAATTAAACAGTGAAA+AGG | - | chr4.2:86717184-86717203 | MS.gene33453:intron | 15.0% |
| !! | TCTAATAACAAAATTATAGA+AGG | + | chr4.2:86717318-86717337 | None:intergenic | 15.0% |
| !!! | CTGTTTAATTATTTTTCAAA+AGG | + | chr4.2:86717179-86717198 | None:intergenic | 15.0% |
| !! | AAAAAACTGGAAAATTGAAA+AGG | + | chr4.2:86714880-86714899 | None:intergenic | 20.0% |
| !! | AAAAACTGGAAAATTGAAAA+GGG | + | chr4.2:86714879-86714898 | None:intergenic | 20.0% |
| !! | AAGGAAAAATTGAATTACTA+AGG | + | chr4.2:86716470-86716489 | None:intergenic | 20.0% |
| !! | AATAAGTATAAACATCATGA+AGG | - | chr4.2:86717447-86717466 | MS.gene33453:intron | 20.0% |
| !! | AGATGATGAATATAAAAAAC+TGG | + | chr4.2:86714893-86714912 | None:intergenic | 20.0% |
| !! | ATAAGTATAAACATCATGAA+GGG | - | chr4.2:86717448-86717467 | MS.gene33453:intron | 20.0% |
| !! | ATCAATTGAATTGAATTGAT+GGG | - | chr4.2:86714990-86715009 | MS.gene33453:CDS | 20.0% |
| !! | ATTTAATTCTGATTAAGCAA+GGG | - | chr4.2:86715700-86715719 | MS.gene33453:intron | 20.0% |
| !! | TATTTAATTCTGATTAAGCA+AGG | - | chr4.2:86715699-86715718 | MS.gene33453:intron | 20.0% |
| !! | TTAATATACACCTTAGTAAT+TGG | - | chr4.2:86716548-86716567 | MS.gene33453:intron | 20.0% |
| !! | TTCAAAAGGAAAATGATAAA+AGG | + | chr4.2:86717165-86717184 | None:intergenic | 20.0% |
| !! | TTCTATCAATTTCTCAATTT+GGG | + | chr4.2:86716112-86716131 | None:intergenic | 20.0% |
| !! | TTTCTATCAATTTCTCAATT+TGG | + | chr4.2:86716113-86716132 | None:intergenic | 20.0% |
| !!! | AAGATATCTGAATTTTGAAT+TGG | - | chr4.2:86715041-86715060 | MS.gene33453:CDS | 20.0% |
| !!! | AGATAATCTAAAATTGTTGT+CGG | - | chr4.2:86716929-86716948 | MS.gene33453:intron | 20.0% |
| !!! | TCACTTATAAATACATTTTC+AGG | + | chr4.2:86716425-86716444 | None:intergenic | 20.0% |
| !!! | TTTAAATGTCTTTTGAGTAT+AGG | - | chr4.2:86717278-86717297 | MS.gene33453:intron | 20.0% |
| ! | AAAACTGGAAAATTGAAAAG+GGG | + | chr4.2:86714878-86714897 | None:intergenic | 25.0% |
| ! | AAATTTAGTACTTTGAACCA+TGG | - | chr4.2:86716647-86716666 | MS.gene33453:intron | 25.0% |
| ! | AAGCAATGAAAATTCATCTT+TGG | + | chr4.2:86715885-86715904 | None:intergenic | 25.0% |
| ! | ACTTAATTATATCACTTTGC+AGG | - | chr4.2:86717651-86717670 | MS.gene33453:intron | 25.0% |
| ! | AGGATAGATTTCTATATTGA+AGG | - | chr4.2:86717626-86717645 | MS.gene33453:intron | 25.0% |
| ! | AGGTCTGTTTATAAGTTATT+TGG | - | chr4.2:86716670-86716689 | MS.gene33453:intron | 25.0% |
| ! | ATAAATGTTTGAGCAACATA+TGG | + | chr4.2:86716021-86716040 | None:intergenic | 25.0% |
| ! | ATAATAGACAATTCATGAAG+TGG | + | chr4.2:86717407-86717426 | None:intergenic | 25.0% |
| ! | ATGTTTATACTTATTGCTTG+AGG | + | chr4.2:86717442-86717461 | None:intergenic | 25.0% |
| ! | CAAATGATGTTTATGTTTGT+TGG | - | chr4.2:86715079-86715098 | MS.gene33453:CDS | 25.0% |
| ! | CAACAAACATAAACATCATT+TGG | + | chr4.2:86715081-86715100 | None:intergenic | 25.0% |
| ! | CACCAAATAAAACATGAATT+TGG | + | chr4.2:86717020-86717039 | None:intergenic | 25.0% |
| ! | GAAGACAAAAGTTATTATCT+GGG | - | chr4.2:86717899-86717918 | MS.gene33453:intron | 25.0% |
| ! | GATCAATTGAATTGAATTGA+TGG | - | chr4.2:86714989-86715008 | MS.gene33453:CDS | 25.0% |
| ! | GGATAGATTTCTATATTGAA+GGG | - | chr4.2:86717627-86717646 | MS.gene33453:intron | 25.0% |
| ! | TAAGTATAAACATCATGAAG+GGG | - | chr4.2:86717449-86717468 | MS.gene33453:intron | 25.0% |
| ! | TCTATTTGACATAGCAATAA+TGG | - | chr4.2:86717585-86717604 | MS.gene33453:intron | 25.0% |
| ! | TGAAGACAAAAGTTATTATC+TGG | - | chr4.2:86717898-86717917 | MS.gene33453:intron | 25.0% |
| ! | TGAATTGTCTATTATCCAAA+AGG | - | chr4.2:86717412-86717431 | MS.gene33453:intron | 25.0% |
| ! | TTAATGAGATGATTCTGTTA+CGG | - | chr4.2:86715589-86715608 | MS.gene33453:intron | 25.0% |
| ! | TTATCAGTTAGACAAAAACA+AGG | + | chr4.2:86715295-86715314 | None:intergenic | 25.0% |
| ! | TTGATGTAATTACATGCAAT+GGG | + | chr4.2:86716499-86716518 | None:intergenic | 25.0% |
| !! | AAAGATGAATTTTCATTGCT+TGG | - | chr4.2:86715884-86715903 | MS.gene33453:intron | 25.0% |
| !! | TTGCTTGTCGTTAAAATTTT+AGG | - | chr4.2:86715382-86715401 | MS.gene33453:intron | 25.0% |
| !!! | CTCCAAATTCATGTTTTATT+TGG | - | chr4.2:86717015-86717034 | MS.gene33453:intron | 25.0% |
| !!! | TATCTCTAAAACTGTAGTAA+TGG | + | chr4.2:86717512-86717531 | None:intergenic | 25.0% |
| !!! | TTTTAGGTGATTTTAAGTAC+TGG | - | chr4.2:86715398-86715417 | MS.gene33453:intron | 25.0% |
| !!! | TTTTCCTTGTTTTTGTTGAA+CGG | + | chr4.2:86715230-86715249 | None:intergenic | 25.0% |
| AAATAAAGTAGAACCATTGG+TGG | + | chr4.2:86717382-86717401 | None:intergenic | 30.0% | |
| ATTCATCAAAAACTAAGAGC+TGG | + | chr4.2:86715470-86715489 | None:intergenic | 30.0% | |
| ATTGATCAAATATAACAGCG+TGG | + | chr4.2:86714976-86714995 | None:intergenic | 30.0% | |
| CAAATGGAGAGAATAAACAA+TGG | + | chr4.2:86717487-86717506 | None:intergenic | 30.0% | |
| CAGAAAGGTAAGGAAAAAAT+TGG | + | chr4.2:86716316-86716335 | None:intergenic | 30.0% | |
| CATTACTCATTATCTCTAAC+AGG | + | chr4.2:86715806-86715825 | None:intergenic | 30.0% | |
| CCACATCTACAAGTAAAATT+AGG | + | chr4.2:86715530-86715549 | None:intergenic | 30.0% | |
| GAGAAATAAAGTAGAACCAT+TGG | + | chr4.2:86717385-86717404 | None:intergenic | 30.0% | |
| GATTTCAAATCATGTGACAA+AGG | + | chr4.2:86717560-86717579 | None:intergenic | 30.0% | |
| GTTGATGTAATTACATGCAA+TGG | + | chr4.2:86716500-86716519 | None:intergenic | 30.0% | |
| TAATTGAACCTCATGGAAAT+TGG | - | chr4.2:86714948-86714967 | MS.gene33453:CDS | 30.0% | |
| TCAAAAGTCACCAATTACTA+AGG | + | chr4.2:86716561-86716580 | None:intergenic | 30.0% | |
| TCAATGTGAGACTAAACAAA+GGG | + | chr4.2:86716391-86716410 | None:intergenic | 30.0% | |
| TGAAAAAGAACGTTGCTATA+TGG | - | chr4.2:86716787-86716806 | MS.gene33453:intron | 30.0% | |
| TGAAATCTTAAATGTTGCAC+AGG | + | chr4.2:86716067-86716086 | None:intergenic | 30.0% | |
| TGACAAGATTAATTACTGAG+AGG | - | chr4.2:86717102-86717121 | MS.gene33453:intron | 30.0% | |
| TGATGAATAAGTCATGACAT+CGG | - | chr4.2:86715482-86715501 | MS.gene33453:intron | 30.0% | |
| TGATGTAATTACATGCAATG+GGG | + | chr4.2:86716498-86716517 | None:intergenic | 30.0% | |
| TTATCTCTAACAGGAAGATA+AGG | + | chr4.2:86715797-86715816 | None:intergenic | 30.0% | |
| TTCAATGTGAGACTAAACAA+AGG | + | chr4.2:86716392-86716411 | None:intergenic | 30.0% | |
| TTTGAGCAACATATGGAAAT+AGG | + | chr4.2:86716014-86716033 | None:intergenic | 30.0% | |
| ! | AACTGTAGTAATGGAACAAA+TGG | + | chr4.2:86717503-86717522 | None:intergenic | 30.0% |
| ! | CCTAATTTTACTTGTAGATG+TGG | - | chr4.2:86715527-86715546 | MS.gene33453:intron | 30.0% |
| ! | GGTATTTTGTACAACATCAA+AGG | - | chr4.2:86717606-86717625 | MS.gene33453:intron | 30.0% |
| ! | TGATGTTTATGTTTGTTGGT+AGG | - | chr4.2:86715083-86715102 | MS.gene33453:CDS | 30.0% |
| ! | TTTCTCAATTTGGGATTACA+AGG | + | chr4.2:86716103-86716122 | None:intergenic | 30.0% |
| ! | TTTTGGATAATTGAACCTCA+TGG | - | chr4.2:86714941-86714960 | MS.gene33453:CDS | 30.0% |
| !! | CAATTTTAAGTACTAGACCA+CGG | + | chr4.2:86715133-86715152 | None:intergenic | 30.0% |
| !! | CTTTTGAAAGTATAAGCTCA+CGG | - | chr4.2:86715171-86715190 | MS.gene33453:intron | 30.0% |
| !! | GTAATTGGTGACTTTTGAAA+CGG | - | chr4.2:86716563-86716582 | MS.gene33453:intron | 30.0% |
| !!! | TTTCCTTGTTTTTGTTGAAC+GGG | + | chr4.2:86715229-86715248 | None:intergenic | 30.0% |
| AACCATGTTTAGATGCTTTG+CGG | - | chr4.2:86716517-86716536 | MS.gene33453:intron | 35.0% | |
| AACTTATAAACAGACCTCCA+TGG | + | chr4.2:86716667-86716686 | None:intergenic | 35.0% | |
| AGATCAAAATACTCGCAGTT+AGG | - | chr4.2:86716132-86716151 | MS.gene33453:intron | 35.0% | |
| AGGAAAAAATTGGACATGAG+AGG | + | chr4.2:86716306-86716325 | None:intergenic | 35.0% | |
| AGTGAAGCTGTATGAGAAAT+AGG | - | chr4.2:86715621-86715640 | MS.gene33453:intron | 35.0% | |
| ATAAACATCATGAAGGGGTT+AGG | - | chr4.2:86717454-86717473 | MS.gene33453:intron | 35.0% | |
| CAAGGAAAAATGAATACGTG+TGG | - | chr4.2:86715241-86715260 | MS.gene33453:intron | 35.0% | |
| CATGAAGAAAACAAGAACCA+GGG | - | chr4.2:86717974-86717993 | MS.gene33453:CDS | 35.0% | |
| CGTGAGCTTATACTTTCAAA+AGG | + | chr4.2:86715173-86715192 | None:intergenic | 35.0% | |
| CTACGAATTTAACGAAGAGA+CGG | - | chr4.2:86717752-86717771 | MS.gene33453:intron | 35.0% | |
| GAAAAAATTGGACATGAGAG+GGG | + | chr4.2:86716304-86716323 | None:intergenic | 35.0% | |
| GACTGCATATCAAAAGAAGA+AGG | + | chr4.2:86715928-86715947 | None:intergenic | 35.0% | |
| GATCAAGTATTCAACAAGGT+TGG | - | chr4.2:86714777-86714796 | MS.gene33453:CDS | 35.0% | |
| GGAAAAAATTGGACATGAGA+GGG | + | chr4.2:86716305-86716324 | None:intergenic | 35.0% | |
| TAATTACATGCAATGGGGAT+TGG | + | chr4.2:86716493-86716512 | None:intergenic | 35.0% | |
| TACGAATTTAACGAAGAGAC+GGG | - | chr4.2:86717753-86717772 | MS.gene33453:intron | 35.0% | |
| TACTTTGTTGACCAACCATT+TGG | + | chr4.2:86715977-86715996 | None:intergenic | 35.0% | |
| TCAAAACTGAACATGTGAGA+AGG | + | chr4.2:86715830-86715849 | None:intergenic | 35.0% | |
| TCATACTCCTTTAACAACTC+TGG | + | chr4.2:86717696-86717715 | None:intergenic | 35.0% | |
| TCATTCTAAATCCACAACAC+AGG | + | chr4.2:86716212-86716231 | None:intergenic | 35.0% | |
| TCCATAAACCAACTAGAAGA+AGG | + | chr4.2:86716879-86716898 | None:intergenic | 35.0% | |
| TCCTTTAACAACTCTGGTAA+TGG | + | chr4.2:86717690-86717709 | None:intergenic | 35.0% | |
| TGTGGATGAGATATAGACAT+TGG | - | chr4.2:86715545-86715564 | MS.gene33453:intron | 35.0% | |
| TTTAGTACTTTGAACCATGG+AGG | - | chr4.2:86716650-86716669 | MS.gene33453:intron | 35.0% | |
| ! | AAGGAGTATGATCTACCAAT+AGG | - | chr4.2:86717705-86717724 | MS.gene33453:intron | 35.0% |
| ! | ACATGAATTTGGAGCATCTT+AGG | + | chr4.2:86717009-86717028 | None:intergenic | 35.0% |
| ! | ACCTTCTTCTAGTTGGTTTA+TGG | - | chr4.2:86716875-86716894 | MS.gene33453:intron | 35.0% |
| ! | ATGAATTTGGAGCATCTTAG+GGG | + | chr4.2:86717007-86717026 | None:intergenic | 35.0% |
| ! | ATTGCTTGAGGAAAACCTTT+TGG | + | chr4.2:86717430-86717449 | None:intergenic | 35.0% |
| ! | CATGAATTTGGAGCATCTTA+GGG | + | chr4.2:86717008-86717027 | None:intergenic | 35.0% |
| ! | CTCAGAACACACATTTTGTT+CGG | - | chr4.2:86716846-86716865 | MS.gene33453:CDS | 35.0% |
| ! | TCTAAAATTGTTGTCGGTAG+TGG | - | chr4.2:86716935-86716954 | MS.gene33453:intron | 35.0% |
| ! | TGGTTGGTCAACAAAGTAAA+AGG | - | chr4.2:86715979-86715998 | MS.gene33453:intron | 35.0% |
| ! | TTGTCTAACTGATAACGATC+AGG | - | chr4.2:86715300-86715319 | MS.gene33453:intron | 35.0% |
| !! | TACATTGATTTCATCACCGA+CGG | + | chr4.2:86714844-86714863 | None:intergenic | 35.0% |
| !!! | ACATTTATCTTTTCGAGTCC+TGG | - | chr4.2:86716033-86716052 | MS.gene33453:intron | 35.0% |
| AACATTGACAGGGAAGATGA+TGG | + | chr4.2:86716963-86716982 | None:intergenic | 40.0% | |
| ACCGTTAACTCTTACTTCAG+AGG | - | chr4.2:86715352-86715371 | MS.gene33453:intron | 40.0% | |
| AGATGATTCTGTTACGGTGA+GGG | - | chr4.2:86715595-86715614 | MS.gene33453:intron | 40.0% | |
| ATAAGTCATGACATCGGTGA+TGG | - | chr4.2:86715488-86715507 | MS.gene33453:intron | 40.0% | |
| ATGAATCTCCACAGTTAGTG+TGG | - | chr4.2:86716606-86716625 | MS.gene33453:intron | 40.0% | |
| ATGTAGTTTGAGTGCGATGT+AGG | - | chr4.2:86715674-86715693 | MS.gene33453:intron | 40.0% | |
| CTAAACCAGTTTGACACTAG+TGG | - | chr4.2:86717344-86717363 | MS.gene33453:intron | 40.0% | |
| CTAAATCCACAACACAGGTA+CGG | + | chr4.2:86716207-86716226 | None:intergenic | 40.0% | |
| CTTGTCAGACAGTAATGCTT+TGG | + | chr4.2:86717089-86717108 | None:intergenic | 40.0% | |
| GACAGTAATGCTTTGGCATT+TGG | + | chr4.2:86717082-86717101 | None:intergenic | 40.0% | |
| GAGGAATAGTTCGTGCAATT+CGG | - | chr4.2:86717121-86717140 | MS.gene33453:intron | 40.0% | |
| GCATATGATGTTACGAGAGA+TGG | - | chr4.2:86717999-86718018 | MS.gene33453:CDS | 40.0% | |
| GCATGAAGAAAACAAGAACC+AGG | - | chr4.2:86717973-86717992 | MS.gene33453:CDS | 40.0% | |
| GCCATTACCAGAGTTGTTAA+AGG | - | chr4.2:86717686-86717705 | MS.gene33453:intron | 40.0% | |
| GGAGAGAATAAACAATGGAG+AGG | + | chr4.2:86717482-86717501 | None:intergenic | 40.0% | |
| GGCTTTCTGATTGAACCAAT+AGG | + | chr4.2:86714805-86714824 | None:intergenic | 40.0% | |
| GTACCCGTTCAACAAAAACA+AGG | - | chr4.2:86715223-86715242 | MS.gene33453:intron | 40.0% | |
| GTATGAAGCAAAACCACCAA+TGG | - | chr4.2:86717366-86717385 | MS.gene33453:intron | 40.0% | |
| GTGAATGACCTTCTTCTAGT+TGG | - | chr4.2:86716868-86716887 | MS.gene33453:intron | 40.0% | |
| GTTTGTAACAAAGCTAACGC+TGG | + | chr4.2:86715775-86715794 | None:intergenic | 40.0% | |
| TAAGTCATGACATCGGTGAT+GGG | - | chr4.2:86715489-86715508 | MS.gene33453:intron | 40.0% | |
| TCAACAAGGTTGGATCCTAT+TGG | - | chr4.2:86714787-86714806 | MS.gene33453:CDS | 40.0% | |
| TCACGAGGAAAGATTCCTAT+TGG | + | chr4.2:86717723-86717742 | None:intergenic | 40.0% | |
| TCATACCACTAGTGTCAAAC+TGG | + | chr4.2:86717352-86717371 | None:intergenic | 40.0% | |
| TGGTAAATGCAACACCAACA+GGG | + | chr4.2:86715450-86715469 | None:intergenic | 40.0% | |
| TTATCGGTGCAACATTGACA+GGG | + | chr4.2:86716973-86716992 | None:intergenic | 40.0% | |
| TTTATCGGTGCAACATTGAC+AGG | + | chr4.2:86716974-86716993 | None:intergenic | 40.0% | |
| ! | AACCGCAAAGCATCTAAACA+TGG | + | chr4.2:86716522-86716541 | None:intergenic | 40.0% |
| ! | AGGGGTTGTGATGCTTTTAT+CGG | + | chr4.2:86716989-86717008 | None:intergenic | 40.0% |
| ! | GTTACTGGTTATCTGGAGAA+AGG | - | chr4.2:86717852-86717871 | MS.gene33453:intron | 40.0% |
| ! | TTGTTGGTAGGCAGATTCTA+TGG | - | chr4.2:86715095-86715114 | MS.gene33453:CDS | 40.0% |
| !! | GCCTCTGAAGTAAGAGTTAA+CGG | + | chr4.2:86715356-86715375 | None:intergenic | 40.0% |
| !! | TTTTAAGTACTAGACCACGG+TGG | + | chr4.2:86715130-86715149 | None:intergenic | 40.0% |
| !!! | TTTTAAGTACTGGTCCACTG+TGG | - | chr4.2:86715408-86715427 | MS.gene33453:intron | 40.0% |
| ACTCGTCATCATGGCTAAGA+TGG | + | chr4.2:86715329-86715348 | None:intergenic | 45.0% | |
| AGAGACGAGAGAAGACAGAA+AGG | + | chr4.2:86716331-86716350 | None:intergenic | 45.0% | |
| AGCAAGGAGCTTAATTCCGT+CGG | - | chr4.2:86714825-86714844 | MS.gene33453:CDS | 45.0% | |
| AGGAAAGCTAGCAGACATAG+AGG | - | chr4.2:86717872-86717891 | MS.gene33453:intron | 45.0% | |
| AGGCAGATTCTATGGTCATG+TGG | - | chr4.2:86715103-86715122 | MS.gene33453:CDS | 45.0% | |
| AGTGGTGAAGAAACGCAAGA+CGG | + | chr4.2:86717832-86717851 | None:intergenic | 45.0% | |
| ATGAGAGGGGTGAGAATACA+GGG | + | chr4.2:86716291-86716310 | None:intergenic | 45.0% | |
| CGAGAGAAGACAGAAAGGTA+AGG | + | chr4.2:86716326-86716345 | None:intergenic | 45.0% | |
| CGTAACATCATATGCTTCCC+TGG | + | chr4.2:86717994-86718013 | None:intergenic | 45.0% | |
| CGTTTCTTCACCACTGTTAC+TGG | - | chr4.2:86717837-86717856 | MS.gene33453:intron | 45.0% | |
| CTCCAGATAACCAGTAACAG+TGG | + | chr4.2:86717850-86717869 | None:intergenic | 45.0% | |
| CTGGTAAATGCAACACCAAC+AGG | + | chr4.2:86715451-86715470 | None:intergenic | 45.0% | |
| CTTTGATCCCTCGGAGAAAA+TGG | + | chr4.2:86717937-86717956 | None:intergenic | 45.0% | |
| GAGATGATTCTGTTACGGTG+AGG | - | chr4.2:86715594-86715613 | MS.gene33453:intron | 45.0% | |
| GATCTGCAACTTAGGTCTGT+AGG | - | chr4.2:86715734-86715753 | MS.gene33453:intron | 45.0% | |
| GCTAACGCTGGATTATGACA+CGG | + | chr4.2:86715763-86715782 | None:intergenic | 45.0% | |
| GCTTGAAGTCTTCATTCCTC+AGG | - | chr4.2:86717779-86717798 | MS.gene33453:intron | 45.0% | |
| GGAAAGCTAGCAGACATAGA+GGG | - | chr4.2:86717873-86717892 | MS.gene33453:intron | 45.0% | |
| GTTCAATCAGAAAGCCAGCA+AGG | - | chr4.2:86714809-86714828 | MS.gene33453:CDS | 45.0% | |
| TAAATGCAACACCAACAGGG+TGG | + | chr4.2:86715447-86715466 | None:intergenic | 45.0% | |
| TACATGCAATGGGGATTGGA+AGG | + | chr4.2:86716489-86716508 | None:intergenic | 45.0% | |
| TAGTATCCGTACCTGTGTTG+TGG | - | chr4.2:86716198-86716217 | MS.gene33453:intron | 45.0% | |
| TGTTCAGTCCACACTAACTG+TGG | + | chr4.2:86716617-86716636 | None:intergenic | 45.0% | |
| ! | AGTGACAACCATTTTCTCCG+AGG | - | chr4.2:86717926-86717945 | MS.gene33453:intron | 45.0% |
| ! | CACCACTGTTACTGGTTATC+TGG | - | chr4.2:86717845-86717864 | MS.gene33453:intron | 45.0% |
| ! | GTGACAACCATTTTCTCCGA+GGG | - | chr4.2:86717927-86717946 | MS.gene33453:intron | 45.0% |
| ! | TCACTGTCGAACAGTATCGA+AGG | - | chr4.2:86715946-86715965 | MS.gene33453:intron | 45.0% |
| ! | TCTTAGCCATGATGACGAGT+AGG | - | chr4.2:86715329-86715348 | MS.gene33453:intron | 45.0% |
| !! | TCGTAGTTTGTTGCATCACG+AGG | + | chr4.2:86717738-86717757 | None:intergenic | 45.0% |
| AACGGTCCTACTCGTCATCA+TGG | + | chr4.2:86715338-86715357 | None:intergenic | 50.0% | |
| AATAGTCAGCGTAGCTGCGT+AGG | - | chr4.2:86716254-86716273 | MS.gene33453:intron | 50.0% | |
| AGATGGGACGGTGACTTGAT+CGG | - | chr4.2:86715201-86715220 | MS.gene33453:intron | 50.0% | |
| ATAGTCAGCGTAGCTGCGTA+GGG | - | chr4.2:86716255-86716274 | MS.gene33453:intron | 50.0% | |
| ATCAAGTCACCGTCCCATCT+AGG | + | chr4.2:86715201-86715220 | None:intergenic | 50.0% | |
| ATTCCTCAGGTCTGCGAAGT+AGG | - | chr4.2:86717792-86717811 | MS.gene33453:intron | 50.0% | |
| CACCATAGAATCCACCCTGT+TGG | - | chr4.2:86715433-86715452 | MS.gene33453:intron | 50.0% | |
| CATGAGAGGGGTGAGAATAC+AGG | + | chr4.2:86716292-86716311 | None:intergenic | 50.0% | |
| GACGGAATTAAGCTCCTTGC+TGG | + | chr4.2:86714826-86714845 | None:intergenic | 50.0% | |
| GATTCTATGGTGGTCCACAG+TGG | + | chr4.2:86715425-86715444 | None:intergenic | 50.0% | |
| GCGTGGTTCCAATTTCCATG+AGG | + | chr4.2:86714959-86714978 | None:intergenic | 50.0% | |
| GGTCTGCGAAGTAGGCTATA+AGG | - | chr4.2:86717800-86717819 | MS.gene33453:intron | 50.0% | |
| GTATCGAAGGCGGAACCAAA+TGG | - | chr4.2:86715959-86715978 | MS.gene33453:intron | 50.0% | |
| GTTGCACAGGTTTCATAGCC+AGG | + | chr4.2:86716054-86716073 | None:intergenic | 50.0% | |
| TCAAAGCTCCATGTGACTGC+TGG | - | chr4.2:86717951-86717970 | MS.gene33453:intron | 50.0% | |
| TCTTCATGCCAGCAGTCACA+TGG | + | chr4.2:86717962-86717981 | None:intergenic | 50.0% | |
| TTAAGCAAGGGAAAGACGCG+AGG | - | chr4.2:86715712-86715731 | MS.gene33453:intron | 50.0% | |
| ! | CAACAGGGTGGATTCTATGG+TGG | + | chr4.2:86715435-86715454 | None:intergenic | 50.0% |
| ! | CACATGGAGCTTTGATCCCT+CGG | + | chr4.2:86717946-86717965 | None:intergenic | 50.0% |
| ! | CACCAACAGGGTGGATTCTA+TGG | + | chr4.2:86715438-86715457 | None:intergenic | 50.0% |
| ! | CTGTCGAACAGTATCGAAGG+CGG | - | chr4.2:86715949-86715968 | MS.gene33453:intron | 50.0% |
| !! | GACATCGGTGATGGGAAATG+TGG | - | chr4.2:86715497-86715516 | MS.gene33453:intron | 50.0% |
| AAGCTCACGGTCCTCCTAGA+TGG | - | chr4.2:86715184-86715203 | MS.gene33453:intron | 55.0% | |
| AAGTCACCGTCCCATCTAGG+AGG | + | chr4.2:86715198-86715217 | None:intergenic | 55.0% | |
| AGCTCACGGTCCTCCTAGAT+GGG | - | chr4.2:86715185-86715204 | MS.gene33453:intron | 55.0% | |
| CGAAGGCGGAACCAAATGGT+TGG | - | chr4.2:86715963-86715982 | MS.gene33453:intron | 55.0% | |
| GACGCGAGGATCTGCAACTT+AGG | - | chr4.2:86715726-86715745 | MS.gene33453:intron | 55.0% | |
| TAGCCTACTTCGCAGACCTG+AGG | + | chr4.2:86717798-86717817 | None:intergenic | 55.0% | |
| TATGGTCATGTGGTCCACCG+TGG | - | chr4.2:86715113-86715132 | MS.gene33453:CDS | 55.0% | |
| CACGGTCCTCCTAGATGGGA+CGG | - | chr4.2:86715189-86715208 | MS.gene33453:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 86714774 | 86718043 | 86714774 | ID=MS.gene33453 |
| chr4.2 | mRNA | 86714774 | 86718043 | 86714774 | ID=MS.gene33453.t1;Parent=MS.gene33453 |
| chr4.2 | exon | 86717957 | 86718043 | 86717957 | ID=MS.gene33453.t1.exon1;Parent=MS.gene33453.t1 |
| chr4.2 | CDS | 86717957 | 86718043 | 86717957 | ID=cds.MS.gene33453.t1;Parent=MS.gene33453.t1 |
| chr4.2 | exon | 86716817 | 86716871 | 86716817 | ID=MS.gene33453.t1.exon2;Parent=MS.gene33453.t1 |
| chr4.2 | CDS | 86716817 | 86716871 | 86716817 | ID=cds.MS.gene33453.t1;Parent=MS.gene33453.t1 |
| chr4.2 | exon | 86714774 | 86715144 | 86714774 | ID=MS.gene33453.t1.exon3;Parent=MS.gene33453.t1 |
| chr4.2 | CDS | 86714774 | 86715144 | 86714774 | ID=cds.MS.gene33453.t1;Parent=MS.gene33453.t1 |
| Gene Sequence |
| Protein sequence |
