Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069002.t1 | XP_003623361.1 | 98.2 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 5.00E-89 | 337 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069002.t1 | Q9M015 | 72.9 | 170 | 46 | 0 | 1 | 170 | 1 | 170 | 2.1e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069002.t1 | G7KT78 | 98.2 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 3.6e-89 | 337.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene069002 | 0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene049756 | MS.gene069002 | 0.800194 | 1.62E-48 | -1.69E-46 |
| MS.gene050288 | MS.gene069002 | 0.829853 | 4.08E-55 | -1.69E-46 |
| MS.gene050317 | MS.gene069002 | 0.812081 | 5.07E-51 | -1.69E-46 |
| MS.gene050439 | MS.gene069002 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene069002 | 0.800063 | 1.72E-48 | -1.69E-46 |
| MS.gene051757 | MS.gene069002 | 0.823015 | 1.74E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene069002 | 0.809321 | 2.01E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene069002 | 0.834076 | 3.69E-56 | -1.69E-46 |
| MS.gene053381 | MS.gene069002 | 0.829569 | 4.78E-55 | -1.69E-46 |
| MS.gene05469 | MS.gene069002 | 0.817376 | 3.41E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene069002 | 0.818727 | 1.69E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene069002 | 0.823667 | 1.22E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene069002 | 0.828288 | 9.77E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene069002 | 0.817497 | 3.20E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene069002 | 0.860234 | 2.38E-63 | -1.69E-46 |
| MS.gene057360 | MS.gene069002 | 0.818887 | 1.55E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene069002 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene069002 | 0.811832 | 5.75E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene069002 | 0.805793 | 1.12E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene069002 | 0.847966 | 8.28E-60 | -1.69E-46 |
| MS.gene06010 | MS.gene069002 | 0.809573 | 1.77E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene069002 | 0.842017 | 3.34E-58 | -1.69E-46 |
| MS.gene060586 | MS.gene069002 | 0.819145 | 1.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93374 | MS.gene069002 | PPI |
| MS.gene052793 | MS.gene069002 | PPI |
| MS.gene069002 | MS.gene55328 | PPI |
| MS.gene95675 | MS.gene069002 | PPI |
| MS.gene85907 | MS.gene069002 | PPI |
| MS.gene53126 | MS.gene069002 | PPI |
| MS.gene069002 | MS.gene33453 | PPI |
| MS.gene78559 | MS.gene069002 | PPI |
| MS.gene99505 | MS.gene069002 | PPI |
| MS.gene33706 | MS.gene069002 | PPI |
| MS.gene071033 | MS.gene069002 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069002.t1 | MTR_7g070000 | 98.235 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 5.28e-122 | 341 |
| MS.gene069002.t1 | MTR_4g014490 | 84.118 | 170 | 27 | 0 | 1 | 170 | 1 | 170 | 1.81e-104 | 296 |
| MS.gene069002.t1 | MTR_5g043190 | 50.000 | 180 | 80 | 2 | 1 | 170 | 1 | 180 | 1.13e-59 | 184 |
| MS.gene069002.t1 | MTR_4g109140 | 48.276 | 174 | 86 | 2 | 1 | 170 | 1 | 174 | 4.61e-54 | 169 |
| MS.gene069002.t1 | MTR_7g108775 | 37.374 | 99 | 60 | 2 | 56 | 153 | 33 | 130 | 9.06e-18 | 76.3 |
| MS.gene069002.t1 | MTR_7g108775 | 38.947 | 95 | 56 | 2 | 56 | 149 | 33 | 126 | 1.69e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069002.t1 | AT3G08890 | 79.412 | 170 | 35 | 0 | 1 | 170 | 1 | 170 | 1.26e-103 | 295 |
| MS.gene069002.t1 | AT3G08890 | 79.412 | 170 | 35 | 0 | 1 | 170 | 1 | 170 | 1.26e-103 | 295 |
| MS.gene069002.t1 | AT5G37070 | 78.235 | 170 | 37 | 0 | 1 | 170 | 1 | 170 | 4.93e-100 | 285 |
| MS.gene069002.t1 | AT5G01610 | 72.941 | 170 | 46 | 0 | 1 | 170 | 1 | 170 | 7.57e-96 | 275 |
| MS.gene069002.t1 | AT5G01610 | 72.941 | 170 | 46 | 0 | 1 | 170 | 1 | 170 | 7.57e-96 | 275 |
| MS.gene069002.t1 | AT2G03350 | 50.000 | 168 | 80 | 2 | 7 | 170 | 12 | 179 | 7.48e-53 | 166 |
| MS.gene069002.t1 | AT1G02816 | 28.696 | 115 | 79 | 2 | 57 | 168 | 35 | 149 | 1.52e-14 | 67.8 |
| MS.gene069002.t1 | AT4G02360 | 32.110 | 109 | 71 | 3 | 51 | 157 | 25 | 132 | 1.06e-13 | 65.5 |
| MS.gene069002.t1 | AT4G02370 | 30.526 | 95 | 65 | 1 | 56 | 149 | 34 | 128 | 5.73e-13 | 63.5 |
Find 41 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTCACAACTACTGTTTC+TGG | 0.191177 | 7.2:+33629403 | MS.gene069002:CDS |
| TCCTTCAGCAACTCTGTTAA+TGG | 0.193748 | 7.2:-33629253 | None:intergenic |
| TGGCTCGTCAACAAATTAAA+AGG | 0.258287 | 7.2:+33628842 | MS.gene069002:CDS |
| TGAACAAGGTTGGATCTTAC+TGG | 0.286424 | 7.2:+33626943 | MS.gene069002:CDS |
| AACTACTGTTTCTGGTTACT+TGG | 0.322844 | 7.2:+33629411 | MS.gene069002:CDS |
| AGGAAAGCTAGCTGATATAG+AGG | 0.343413 | 7.2:+33629438 | MS.gene069002:CDS |
| CTCATAGTTTGTTGCGTCAC+GGG | 0.396964 | 7.2:-33629302 | None:intergenic |
| TAATTTGTTGACGAGCCATT+TGG | 0.400342 | 7.2:-33628837 | None:intergenic |
| GACAGAGTTGAGTTCCTTGT+TGG | 0.400423 | 7.2:-33626979 | None:intergenic |
| CCAGCAGTGAAGTGCAGCTT+TGG | 0.409039 | 7.2:-33629517 | None:intergenic |
| CTTTGGTCCCTCGGATGTAA+TGG | 0.437677 | 7.2:-33629500 | None:intergenic |
| GTTTCTGGTTACTTGGAGAA+AGG | 0.453263 | 7.2:+33629418 | MS.gene069002:CDS |
| GCATGAAGAAAACAAGGAAA+AGG | 0.453741 | 7.2:+33629539 | MS.gene069002:CDS |
| CCAAAGCTGCACTTCACTGC+TGG | 0.476094 | 7.2:+33629517 | MS.gene069002:CDS |
| TCACGGGGAAAGATTCCTAT+TGG | 0.480300 | 7.2:-33629286 | None:intergenic |
| TCACTGTCAAGCAGCATTGA+AGG | 0.491753 | 7.2:+33628809 | MS.gene069002:CDS |
| AAGGAGTATGATCTACCAAT+AGG | 0.492134 | 7.2:+33629271 | MS.gene069002:CDS |
| ATTCCTCAAGTGTGTGAAGT+AGG | 0.513172 | 7.2:+33629358 | MS.gene069002:CDS |
| GAAGTGCAGCTTTGGTCCCT+CGG | 0.517935 | 7.2:-33629509 | None:intergenic |
| CATGAAGAAAACAAGGAAAA+GGG | 0.522722 | 7.2:+33629540 | MS.gene069002:CDS |
| TTTCACCCACACCAACACTT+TGG | 0.523358 | 7.2:-33629470 | None:intergenic |
| GATCAGGTATTGAACAAGGT+TGG | 0.526839 | 7.2:+33626933 | MS.gene069002:CDS |
| TGAATCTGGGTGAATGGATC+AGG | 0.543188 | 7.2:+33626917 | None:intergenic |
| CTGCTGGCATGAAGAAAACA+AGG | 0.556882 | 7.2:+33629533 | MS.gene069002:CDS |
| ACTCATAGTTTGTTGCGTCA+CGG | 0.559590 | 7.2:-33629303 | None:intergenic |
| GCATATGAAGTTTCTAGAGA+TGG | 0.564091 | 7.2:+33629565 | MS.gene069002:CDS |
| GGAAAGCTAGCTGATATAGA+GGG | 0.565162 | 7.2:+33629439 | MS.gene069002:CDS |
| TCATAGTTTGTTGCGTCACG+GGG | 0.605542 | 7.2:-33629301 | None:intergenic |
| TGAAGACCAAAGTGTTGGTG+TGG | 0.610783 | 7.2:+33629464 | MS.gene069002:CDS |
| GGGAATGAAGACCAAAGTGT+TGG | 0.613612 | 7.2:+33629459 | MS.gene069002:CDS |
| AACAAGGAACTCAACTCTGT+CGG | 0.617344 | 7.2:+33626981 | MS.gene069002:CDS |
| GTTCAGCAAGAAAGCCAACA+AGG | 0.625594 | 7.2:+33626965 | MS.gene069002:CDS |
| TAGCCTACTTCACACACTTG+AGG | 0.632117 | 7.2:-33629361 | None:intergenic |
| GCCATTAACAGAGTTGCTGA+AGG | 0.634031 | 7.2:+33629252 | MS.gene069002:CDS |
| GCATTGAAGGAGGAACCAAA+TGG | 0.635369 | 7.2:+33628822 | MS.gene069002:CDS |
| TGGTCCCTCGGATGTAATGG+CGG | 0.643277 | 7.2:-33629497 | None:intergenic |
| CTGTCAAGCAGCATTGAAGG+AGG | 0.660543 | 7.2:+33628812 | MS.gene069002:CDS |
| AGTTACCGCCATTACATCCG+AGG | 0.662266 | 7.2:+33629492 | MS.gene069002:CDS |
| AATGGATCAGGTATTGAACA+AGG | 0.667362 | 7.2:+33626929 | None:intergenic |
| GTTACCGCCATTACATCCGA+GGG | 0.676710 | 7.2:+33629493 | MS.gene069002:CDS |
| GAAGACCAAAGTGTTGGTGT+GGG | 0.680068 | 7.2:+33629465 | MS.gene069002:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAAAAGAGTAAAA+AGG | - | chr7.2:33627054-33627073 | None:intergenic | 10.0% |
| !! | ATAATAAAAAAGAGTAAAAA+GGG | - | chr7.2:33627053-33627072 | None:intergenic | 10.0% |
| !! | TAGATTATTTAATGATTATT+TGG | + | chr7.2:33627392-33627411 | MS.gene069002:intron | 10.0% |
| !!! | ATAAATAAATAAAAGTTTTG+GGG | + | chr7.2:33627579-33627598 | MS.gene069002:intron | 10.0% |
| !! | AATAAAGATAATATAAGCTA+TGG | + | chr7.2:33629051-33629070 | MS.gene069002:intron | 15.0% |
| !! | TAAATATTCTACTTTGATTA+AGG | + | chr7.2:33628951-33628970 | MS.gene069002:intron | 15.0% |
| !! | TAATAAAAAAGAGTAAAAAG+GGG | - | chr7.2:33627052-33627071 | None:intergenic | 15.0% |
| !!! | TAAATAAATAAAAGTTTTGG+GGG | + | chr7.2:33627580-33627599 | MS.gene069002:intron | 15.0% |
| !! | AATAAAAAAGAGTAAAAAGG+GGG | - | chr7.2:33627051-33627070 | None:intergenic | 20.0% |
| !! | AATTAAACTGTATCTAAACA+GGG | - | chr7.2:33628977-33628996 | None:intergenic | 20.0% |
| !! | AGTATTCAACTAAAAAAAAG+AGG | - | chr7.2:33627101-33627120 | None:intergenic | 20.0% |
| !! | TAATTAAACTGTATCTAAAC+AGG | - | chr7.2:33628978-33628997 | None:intergenic | 20.0% |
| !!! | AATTTTTCATGCATAATATG+TGG | + | chr7.2:33628221-33628240 | MS.gene069002:intron | 20.0% |
| !!! | ACTTAATTGAACTTATTTTC+TGG | - | chr7.2:33629164-33629183 | None:intergenic | 20.0% |
| !!! | ATTTTTCATGCATAATATGT+GGG | + | chr7.2:33628222-33628241 | MS.gene069002:intron | 20.0% |
| !!! | TATTTGTCGAATTTTAAATC+TGG | + | chr7.2:33627306-33627325 | MS.gene069002:intron | 20.0% |
| ! | ACTCATAAAAAGATTGATCA+AGG | - | chr7.2:33627945-33627964 | None:intergenic | 25.0% |
| ! | ATAAAAAAGAGTAAAAAGGG+GGG | - | chr7.2:33627050-33627069 | None:intergenic | 25.0% |
| ! | ATATATCAATCTATAGACAC+AGG | - | chr7.2:33628388-33628407 | None:intergenic | 25.0% |
| ! | ATTTCTTTGATCTGAATATG+AGG | + | chr7.2:33628623-33628642 | MS.gene069002:intron | 25.0% |
| ! | ATTTGTCCATTTATCTTTAC+TGG | + | chr7.2:33628499-33628518 | MS.gene069002:intron | 25.0% |
| ! | GATTTCCATTATCAGTAAAT+GGG | - | chr7.2:33628677-33628696 | None:intergenic | 25.0% |
| ! | TGATTTCCATTATCAGTAAA+TGG | - | chr7.2:33628678-33628697 | None:intergenic | 25.0% |
| ! | TTATATTAACACTCTTCCTT+TGG | + | chr7.2:33628777-33628796 | MS.gene069002:intron | 25.0% |
| ! | TTTATCCCATTTACTGATAA+TGG | + | chr7.2:33628669-33628688 | MS.gene069002:intron | 25.0% |
| ! | TTTCTTTGATCTGAATATGA+GGG | + | chr7.2:33628624-33628643 | MS.gene069002:intron | 25.0% |
| !!! | CAGATTGATTTTTTAATGTC+AGG | - | chr7.2:33628322-33628341 | None:intergenic | 25.0% |
| !!! | TGATAATGACAATGACATTT+TGG | + | chr7.2:33627652-33627671 | MS.gene069002:intron | 25.0% |
| AAAGTCTCACATTTATCCTT+AGG | - | chr7.2:33628271-33628290 | None:intergenic | 30.0% | |
| AAATCATTTGTGAGTCTTGA+GGG | + | chr7.2:33628692-33628711 | MS.gene069002:intron | 30.0% | |
| AACAAAGAACTAGAAAACCA+AGG | - | chr7.2:33628587-33628606 | None:intergenic | 30.0% | |
| AACTGTCCAGTAAAGATAAA+TGG | - | chr7.2:33628508-33628527 | None:intergenic | 30.0% | |
| AATAGAAATTAGGAAGCCTA+AGG | + | chr7.2:33628252-33628271 | MS.gene069002:intron | 30.0% | |
| ACAGTGACTTAAAAAACCAA+AGG | - | chr7.2:33628796-33628815 | None:intergenic | 30.0% | |
| CATGAAGAAAACAAGGAAAA+GGG | + | chr7.2:33629540-33629559 | MS.gene069002:CDS | 30.0% | |
| CATGTTAGAGGGTAAAATTA+AGG | - | chr7.2:33629200-33629219 | None:intergenic | 30.0% | |
| CTGGCACATAAACATTAATT+GGG | - | chr7.2:33627765-33627784 | None:intergenic | 30.0% | |
| GGGTTTAGTGAATAGAAATT+AGG | + | chr7.2:33628242-33628261 | MS.gene069002:intron | 30.0% | |
| TAAGAATCATAAGCAAGACA+TGG | - | chr7.2:33627141-33627160 | None:intergenic | 30.0% | |
| TAAGGATAAATGTGAGACTT+TGG | + | chr7.2:33628270-33628289 | MS.gene069002:intron | 30.0% | |
| TAATGACTTAACAATTGCCT+TGG | + | chr7.2:33628567-33628586 | MS.gene069002:intron | 30.0% | |
| ! | CTTAATTTTACCCTCTAACA+TGG | + | chr7.2:33629198-33629217 | MS.gene069002:intron | 30.0% |
| ! | CTTTGTTTGGGAAAATATGT+TGG | + | chr7.2:33628539-33628558 | MS.gene069002:intron | 30.0% |
| ! | TTCAACATTTGCTAGTCTAA+TGG | - | chr7.2:33628729-33628748 | None:intergenic | 30.0% |
| ! | TTTTTCTGTGTTTCTCAATC+AGG | + | chr7.2:33628887-33628906 | MS.gene069002:intron | 30.0% |
| !! | CTCAGCTATCTGATTTTAAT+TGG | + | chr7.2:33627262-33627281 | MS.gene069002:intron | 30.0% |
| !! | GTAAAAGTATTAAGTAGTGC+TGG | + | chr7.2:33627976-33627995 | MS.gene069002:intron | 30.0% |
| !! | TTGAAACTTTTCGCTTTGTT+TGG | + | chr7.2:33628526-33628545 | MS.gene069002:intron | 30.0% |
| !!! | AATGACATTTTGGTTGTGAT+CGG | + | chr7.2:33627662-33627681 | MS.gene069002:intron | 30.0% |
| !!! | AGCTATCTGATTTTAATTGG+TGG | + | chr7.2:33627265-33627284 | MS.gene069002:intron | 30.0% |
| !!! | ATGTCGTAAGCTATTTTTGT+TGG | + | chr7.2:33629108-33629127 | MS.gene069002:intron | 30.0% |
| !!! | GCATGAATTCTAGAATGTTT+TGG | + | chr7.2:33627873-33627892 | MS.gene069002:intron | 30.0% |
| !!! | TGAAACTTTTCGCTTTGTTT+GGG | + | chr7.2:33628527-33628546 | MS.gene069002:intron | 30.0% |
| !!! | TTGGTTTTCTAGTTCTTTGT+TGG | + | chr7.2:33628586-33628605 | MS.gene069002:intron | 30.0% |
| ACACATACATGCATGTACTT+TGG | + | chr7.2:33627217-33627236 | MS.gene069002:intron | 35.0% | |
| AGAACACCAAGTATTCAACA+TGG | - | chr7.2:33628068-33628087 | None:intergenic | 35.0% | |
| ATGATACCTTACCATGTTAG+AGG | - | chr7.2:33629212-33629231 | None:intergenic | 35.0% | |
| ATTCTCTTCACAAAGGAAGT+CGG | - | chr7.2:33627333-33627352 | None:intergenic | 35.0% | |
| CACATACATGCATGTACTTT+GGG | + | chr7.2:33627218-33627237 | MS.gene069002:intron | 35.0% | |
| CCAAGTAAGTTTCATATCCA+GGG | - | chr7.2:33627531-33627550 | None:intergenic | 35.0% | |
| CCAATTAATGTTTATGTGCC+AGG | + | chr7.2:33627763-33627782 | MS.gene069002:intron | 35.0% | |
| CCTGGCACATAAACATTAAT+TGG | - | chr7.2:33627766-33627785 | None:intergenic | 35.0% | |
| CTACATATGAGTTTACCAGT+AGG | + | chr7.2:33628028-33628047 | MS.gene069002:intron | 35.0% | |
| GAAATCATTTGTGAGTCTTG+AGG | + | chr7.2:33628691-33628710 | MS.gene069002:intron | 35.0% | |
| GAACACCAAGTATTCAACAT+GGG | - | chr7.2:33628067-33628086 | None:intergenic | 35.0% | |
| GATTGGTAGGCTTAAAAACT+TGG | - | chr7.2:33627792-33627811 | None:intergenic | 35.0% | |
| GATTTCCCATGTTGAATACT+TGG | + | chr7.2:33628059-33628078 | MS.gene069002:intron | 35.0% | |
| GCATGAAGAAAACAAGGAAA+AGG | + | chr7.2:33629539-33629558 | MS.gene069002:CDS | 35.0% | |
| GGTTTGTGTATCAGTAAAGA+GGG | + | chr7.2:33627894-33627913 | MS.gene069002:intron | 35.0% | |
| GTATTCAACATGGGAAATCA+AGG | - | chr7.2:33628058-33628077 | None:intergenic | 35.0% | |
| GTTTGTGTATCAGTAAAGAG+GGG | + | chr7.2:33627895-33627914 | MS.gene069002:intron | 35.0% | |
| TAAAGTCACATGATGCACAA+AGG | - | chr7.2:33627725-33627744 | None:intergenic | 35.0% | |
| TAAATGGACAAATACCTCTC+CGG | - | chr7.2:33628492-33628511 | None:intergenic | 35.0% | |
| TCAGAAGAGAAATACAGTCA+CGG | - | chr7.2:33628005-33628024 | None:intergenic | 35.0% | |
| TCCAAGTAAGTTTCATATCC+AGG | - | chr7.2:33627532-33627551 | None:intergenic | 35.0% | |
| TGATACCTTACCATGTTAGA+GGG | - | chr7.2:33629211-33629230 | None:intergenic | 35.0% | |
| TGGCTCGTCAACAAATTAAA+AGG | + | chr7.2:33628842-33628861 | MS.gene069002:CDS | 35.0% | |
| TTGAGATCGTACAACCAAAT+TGG | - | chr7.2:33627362-33627381 | None:intergenic | 35.0% | |
| TTTGATCTGAATATGAGGGA+AGG | + | chr7.2:33628628-33628647 | MS.gene069002:intron | 35.0% | |
| ! | AAGGAGTATGATCTACCAAT+AGG | + | chr7.2:33629271-33629290 | MS.gene069002:CDS | 35.0% |
| ! | GAGTCGAGATATGTTCTTTT+GGG | + | chr7.2:33627500-33627519 | MS.gene069002:intron | 35.0% |
| ! | GCATATGAAGTTTCTAGAGA+TGG | + | chr7.2:33629565-33629584 | MS.gene069002:CDS | 35.0% |
| ! | TGAGTCGAGATATGTTCTTT+TGG | + | chr7.2:33627499-33627518 | MS.gene069002:intron | 35.0% |
| ! | TGGTTTGTGTATCAGTAAAG+AGG | + | chr7.2:33627893-33627912 | MS.gene069002:intron | 35.0% |
| ! | TTTTAAGCCTACCAATCTAG+CGG | + | chr7.2:33627795-33627814 | MS.gene069002:intron | 35.0% |
| ! | TTTTACCCTCTAACATGGTA+AGG | + | chr7.2:33629203-33629222 | MS.gene069002:intron | 35.0% |
| !! | AACTACTGTTTCTGGTTACT+TGG | + | chr7.2:33629411-33629430 | MS.gene069002:CDS | 35.0% |
| !! | ATGGTAAGGTATCATTTTGC+AGG | + | chr7.2:33629217-33629236 | MS.gene069002:intron | 35.0% |
| !! | CATGTGAAGCATTGGTTTAT+CGG | + | chr7.2:33627824-33627843 | MS.gene069002:intron | 35.0% |
| !! | TAATTTGTTGACGAGCCATT+TGG | - | chr7.2:33628840-33628859 | None:intergenic | 35.0% |
| !!! | ATGACATTTTGGTTGTGATC+GGG | + | chr7.2:33627663-33627682 | MS.gene069002:intron | 35.0% |
| !!! | GTTTATTTTGCCTCTGTTGT+AGG | + | chr7.2:33628126-33628145 | MS.gene069002:intron | 35.0% |
| AAATGTGAGACTTTGGCGTT+GGG | + | chr7.2:33628277-33628296 | MS.gene069002:intron | 40.0% | |
| AACAAGGAACTCAACTCTGT+CGG | + | chr7.2:33626981-33627000 | MS.gene069002:CDS | 40.0% | |
| AAGAGAATCCAGGACCAATT+TGG | + | chr7.2:33627345-33627364 | MS.gene069002:intron | 40.0% | |
| ACATGTTTATGCCGCTAGAT+TGG | - | chr7.2:33627809-33627828 | None:intergenic | 40.0% | |
| ACTCCAATATCCTACAACAG+AGG | - | chr7.2:33628139-33628158 | None:intergenic | 40.0% | |
| AGGAAAGCTAGCTGATATAG+AGG | + | chr7.2:33629438-33629457 | MS.gene069002:CDS | 40.0% | |
| ATTCCTCAAGTGTGTGAAGT+AGG | + | chr7.2:33629358-33629377 | MS.gene069002:CDS | 40.0% | |
| CCCTGGATATGAAACTTACT+TGG | + | chr7.2:33627528-33627547 | MS.gene069002:intron | 40.0% | |
| GGAAAGCTAGCTGATATAGA+GGG | + | chr7.2:33629439-33629458 | MS.gene069002:CDS | 40.0% | |
| GGCATAAACATGTGAAGCAT+TGG | + | chr7.2:33627816-33627835 | MS.gene069002:intron | 40.0% | |
| GGCTTAAAAACTTGGATTCC+TGG | - | chr7.2:33627784-33627803 | None:intergenic | 40.0% | |
| TAAATGTGAGACTTTGGCGT+TGG | + | chr7.2:33628276-33628295 | MS.gene069002:intron | 40.0% | |
| TCCTTCAGCAACTCTGTTAA+TGG | - | chr7.2:33629256-33629275 | None:intergenic | 40.0% | |
| TGAACAAGGTTGGATCTTAC+TGG | + | chr7.2:33626943-33626962 | MS.gene069002:CDS | 40.0% | |
| TGGGGGAGAACTGTAAAATT+CGG | + | chr7.2:33627597-33627616 | MS.gene069002:intron | 40.0% | |
| TGTGCATCATGTGACTTTAG+AGG | + | chr7.2:33627726-33627745 | MS.gene069002:intron | 40.0% | |
| TTCCTTTGTGAAGAGAATCC+AGG | + | chr7.2:33627335-33627354 | MS.gene069002:intron | 40.0% | |
| TTGCCTCTGTTGTAGGATAT+TGG | + | chr7.2:33628133-33628152 | MS.gene069002:intron | 40.0% | |
| ! | GTCGATTGATTTCGAATCGA+TGG | + | chr7.2:33627432-33627451 | MS.gene069002:intron | 40.0% |
| !! | ACTCATAGTTTGTTGCGTCA+CGG | - | chr7.2:33629306-33629325 | None:intergenic | 40.0% |
| !! | GATCAGGTATTGAACAAGGT+TGG | + | chr7.2:33626933-33626952 | MS.gene069002:CDS | 40.0% |
| !! | GTTTCTGGTTACTTGGAGAA+AGG | + | chr7.2:33629418-33629437 | MS.gene069002:CDS | 40.0% |
| !!! | ATCAATTTTGAAGCTGACGC+CGG | + | chr7.2:33628470-33628489 | MS.gene069002:intron | 40.0% |
| AGGTGACAGCTTGATTCCAA+AGG | - | chr7.2:33627925-33627944 | None:intergenic | 45.0% | |
| CGCTTCACAACTACTGTTTC+TGG | + | chr7.2:33629403-33629422 | MS.gene069002:CDS | 45.0% | |
| CTGCTGGCATGAAGAAAACA+AGG | + | chr7.2:33629533-33629552 | MS.gene069002:CDS | 45.0% | |
| GACAGAGTTGAGTTCCTTGT+TGG | - | chr7.2:33626982-33627001 | None:intergenic | 45.0% | |
| GCATTGAAGGAGGAACCAAA+TGG | + | chr7.2:33628822-33628841 | MS.gene069002:CDS | 45.0% | |
| GCCATTAACAGAGTTGCTGA+AGG | + | chr7.2:33629252-33629271 | MS.gene069002:CDS | 45.0% | |
| GGAAATCAAGGAAAGCCTAC+TGG | - | chr7.2:33628046-33628065 | None:intergenic | 45.0% | |
| GGCGGTGTAACTAGTAAACT+AGG | + | chr7.2:33627691-33627710 | MS.gene069002:intron | 45.0% | |
| GGGAATGAAGACCAAAGTGT+TGG | + | chr7.2:33629459-33629478 | MS.gene069002:CDS | 45.0% | |
| GGTGACAGCTTGATTCCAAA+GGG | - | chr7.2:33627924-33627943 | None:intergenic | 45.0% | |
| GTCCTGGATTCTCTTCACAA+AGG | - | chr7.2:33627340-33627359 | None:intergenic | 45.0% | |
| GTTCAGCAAGAAAGCCAACA+AGG | + | chr7.2:33626965-33626984 | MS.gene069002:CDS | 45.0% | |
| GTTTATGCCGCTAGATTGGT+AGG | - | chr7.2:33627805-33627824 | None:intergenic | 45.0% | |
| TAGCCTACTTCACACACTTG+AGG | - | chr7.2:33629364-33629383 | None:intergenic | 45.0% | |
| TCACGGGGAAAGATTCCTAT+TGG | - | chr7.2:33629289-33629308 | None:intergenic | 45.0% | |
| TCGTACAACCAAATTGGTCC+TGG | - | chr7.2:33627356-33627375 | None:intergenic | 45.0% | |
| TTTCACCCACACCAACACTT+TGG | - | chr7.2:33629473-33629492 | None:intergenic | 45.0% | |
| ! | TCACTGTCAAGCAGCATTGA+AGG | + | chr7.2:33628809-33628828 | MS.gene069002:CDS | 45.0% |
| !! | CTCATAGTTTGTTGCGTCAC+GGG | - | chr7.2:33629305-33629324 | None:intergenic | 45.0% |
| !! | GAAGACCAAAGTGTTGGTGT+GGG | + | chr7.2:33629465-33629484 | MS.gene069002:CDS | 45.0% |
| !! | TCATAGTTTGTTGCGTCACG+GGG | - | chr7.2:33629304-33629323 | None:intergenic | 45.0% |
| !! | TGAAGACCAAAGTGTTGGTG+TGG | + | chr7.2:33629464-33629483 | MS.gene069002:CDS | 45.0% |
| !!! | ACATTTTGGTTGTGATCGGG+AGG | + | chr7.2:33627666-33627685 | MS.gene069002:intron | 45.0% |
| !!! | ATTTTGGTTGTGATCGGGAG+GGG | + | chr7.2:33627668-33627687 | MS.gene069002:intron | 45.0% |
| !!! | CATTTTGGTTGTGATCGGGA+GGG | + | chr7.2:33627667-33627686 | MS.gene069002:intron | 45.0% |
| !!! | TGTTCTTTTGGGATTCTCCC+TGG | + | chr7.2:33627511-33627530 | MS.gene069002:intron | 45.0% |
| !! | TATTTATTTATAAAAAAACA+CGG | - | chr7.2:33627570-33627589 | None:intergenic | 5.0% |
| !!! | TATAAATAAATAAAAGTTTT+GGG | + | chr7.2:33627578-33627597 | MS.gene069002:intron | 5.0% |
| !!! | TTATAAATAAATAAAAGTTT+TGG | + | chr7.2:33627577-33627596 | MS.gene069002:intron | 5.0% |
| AGTAAAGAGGGGCTACCCTT+TGG | + | chr7.2:33627906-33627925 | MS.gene069002:intron | 50.0% | |
| AGTTACCGCCATTACATCCG+AGG | + | chr7.2:33629492-33629511 | MS.gene069002:CDS | 50.0% | |
| CTTTGGTCCCTCGGATGTAA+TGG | - | chr7.2:33629503-33629522 | None:intergenic | 50.0% | |
| GTTACCGCCATTACATCCGA+GGG | + | chr7.2:33629493-33629512 | MS.gene069002:CDS | 50.0% | |
| ! | AAAAAGGGGGGTGTAGCAGT+AGG | - | chr7.2:33627038-33627057 | None:intergenic | 50.0% |
| ! | AAAAGGGGGGTGTAGCAGTA+GGG | - | chr7.2:33627037-33627056 | None:intergenic | 50.0% |
| ! | CTGTCAAGCAGCATTGAAGG+AGG | + | chr7.2:33628812-33628831 | MS.gene069002:CDS | 50.0% |
| !! | TTTTGGTTGTGATCGGGAGG+GGG | + | chr7.2:33627669-33627688 | MS.gene069002:intron | 50.0% |
| CCAAAGCTGCACTTCACTGC+TGG | + | chr7.2:33629517-33629536 | MS.gene069002:CDS | 55.0% | |
| CCAGCAGTGAAGTGCAGCTT+TGG | - | chr7.2:33629520-33629539 | None:intergenic | 55.0% | |
| TGGTCCCTCGGATGTAATGG+CGG | - | chr7.2:33629500-33629519 | None:intergenic | 55.0% | |
| TTTGGTTGTGATCGGGAGGG+GGG | + | chr7.2:33627670-33627689 | MS.gene069002:intron | 55.0% | |
| ! | GAAGTGCAGCTTTGGTCCCT+CGG | - | chr7.2:33629512-33629531 | None:intergenic | 55.0% |
| ! | TGGCGTTGGGCACAGGATTA+TGG | + | chr7.2:33628290-33628309 | MS.gene069002:intron | 55.0% |
| !!! | TTTTGAAGCTGACGCCGGAG+AGG | + | chr7.2:33628475-33628494 | MS.gene069002:intron | 55.0% |
| ! | GAGACTTTGGCGTTGGGCAC+AGG | + | chr7.2:33628283-33628302 | MS.gene069002:intron | 60.0% |
| GGTTGTGATCGGGAGGGGGG+CGG | + | chr7.2:33627673-33627692 | MS.gene069002:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 33626930 | 33629609 | 33626930 | ID=MS.gene069002 |
| chr7.2 | mRNA | 33626930 | 33629609 | 33626930 | ID=MS.gene069002.t1;Parent=MS.gene069002 |
| chr7.2 | exon | 33626930 | 33627016 | 33626930 | ID=MS.gene069002.t1.exon1;Parent=MS.gene069002.t1 |
| chr7.2 | CDS | 33626930 | 33627016 | 33626930 | ID=cds.MS.gene069002.t1;Parent=MS.gene069002.t1 |
| chr7.2 | exon | 33628809 | 33628863 | 33628809 | ID=MS.gene069002.t1.exon2;Parent=MS.gene069002.t1 |
| chr7.2 | CDS | 33628809 | 33628863 | 33628809 | ID=cds.MS.gene069002.t1;Parent=MS.gene069002.t1 |
| chr7.2 | exon | 33629239 | 33629609 | 33629239 | ID=MS.gene069002.t1.exon3;Parent=MS.gene069002.t1 |
| chr7.2 | CDS | 33629239 | 33629609 | 33629239 | ID=cds.MS.gene069002.t1;Parent=MS.gene069002.t1 |
| Gene Sequence |
| Protein sequence |
