Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99505.t1 | XP_003623361.1 | 87.1 | 170 | 4 | 1 | 1 | 152 | 1 | 170 | 8.10E-75 | 289.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99505.t1 | Q9M015 | 62.4 | 170 | 46 | 1 | 1 | 152 | 1 | 170 | 7.0e-59 | 228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99505.t1 | G7KT78 | 87.1 | 170 | 4 | 1 | 1 | 152 | 1 | 170 | 5.9e-75 | 289.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050288 | MS.gene99505 | 0.800124 | 1.67E-48 | -1.69E-46 |
| MS.gene050317 | MS.gene99505 | 0.821778 | 3.37E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene99505 | 0.812751 | 3.62E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene99505 | 0.804204 | 2.42E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene99505 | 0.826567 | 2.53E-54 | -1.69E-46 |
| MS.gene051245 | MS.gene99505 | 0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene051756 | MS.gene99505 | 0.812493 | 4.12E-51 | -1.69E-46 |
| MS.gene051757 | MS.gene99505 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene99505 | 0.800716 | 1.27E-48 | -1.69E-46 |
| MS.gene052370 | MS.gene99505 | 0.817402 | 3.36E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene99505 | 0.824372 | 8.37E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene99505 | 0.829 | 6.57E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene99505 | 0.800825 | 1.20E-48 | -1.69E-46 |
| MS.gene055314 | MS.gene99505 | 0.80018 | 1.63E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene99505 | 0.839307 | 1.71E-57 | -1.69E-46 |
| MS.gene058646 | MS.gene99505 | 0.803465 | 3.44E-49 | -1.69E-46 |
| MS.gene058654 | MS.gene99505 | 0.822231 | 2.65E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene99505 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene059290 | MS.gene99505 | 0.804575 | 2.02E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene99505 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene99505 | 0.818428 | 1.97E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99505 | MS.gene071033 | PPI |
| MS.gene99505 | MS.gene93374 | PPI |
| MS.gene95675 | MS.gene99505 | PPI |
| MS.gene99505 | MS.gene55328 | PPI |
| MS.gene99505 | MS.gene95675 | PPI |
| MS.gene53126 | MS.gene99505 | PPI |
| MS.gene99505 | MS.gene78559 | PPI |
| MS.gene99505 | MS.gene069002 | PPI |
| MS.gene99505 | MS.gene33453 | PPI |
| MS.gene99505 | MS.gene85907 | PPI |
| MS.gene33706 | MS.gene99505 | PPI |
| MS.gene99505 | MS.gene052793 | PPI |
| MS.gene99505 | MS.gene33706 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99505.t1 | MTR_7g070000 | 87.059 | 170 | 4 | 1 | 1 | 152 | 1 | 170 | 5.81e-103 | 292 |
| MS.gene99505.t1 | MTR_4g014490 | 73.529 | 170 | 27 | 1 | 1 | 152 | 1 | 170 | 2.38e-86 | 250 |
| MS.gene99505.t1 | MTR_5g043190 | 43.333 | 180 | 74 | 3 | 1 | 152 | 1 | 180 | 1.76e-46 | 149 |
| MS.gene99505.t1 | MTR_4g109140 | 41.954 | 174 | 79 | 3 | 1 | 152 | 1 | 174 | 1.12e-41 | 137 |
| MS.gene99505.t1 | MTR_7g108775 | 33.708 | 89 | 57 | 2 | 48 | 135 | 43 | 130 | 1.29e-11 | 59.3 |
| MS.gene99505.t1 | MTR_7g108775 | 35.294 | 85 | 53 | 2 | 48 | 131 | 43 | 126 | 2.08e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99505.t1 | AT3G08890 | 70.588 | 170 | 32 | 1 | 1 | 152 | 1 | 170 | 2.44e-87 | 253 |
| MS.gene99505.t1 | AT3G08890 | 70.588 | 170 | 32 | 1 | 1 | 152 | 1 | 170 | 2.44e-87 | 253 |
| MS.gene99505.t1 | AT5G37070 | 69.412 | 170 | 34 | 1 | 1 | 152 | 1 | 170 | 7.55e-84 | 244 |
| MS.gene99505.t1 | AT5G01610 | 62.353 | 170 | 46 | 1 | 1 | 152 | 1 | 170 | 1.46e-77 | 228 |
| MS.gene99505.t1 | AT5G01610 | 62.353 | 170 | 46 | 1 | 1 | 152 | 1 | 170 | 1.46e-77 | 228 |
| MS.gene99505.t1 | AT2G03350 | 42.857 | 168 | 74 | 3 | 7 | 152 | 12 | 179 | 8.29e-41 | 135 |
| MS.gene99505.t1 | AT4G02360 | 30.303 | 99 | 67 | 2 | 42 | 139 | 35 | 132 | 8.73e-11 | 57.0 |
Find 37 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTCACAACTACTGTTTC+TGG | 0.191177 | 7.1:+32207504 | MS.gene99505:CDS |
| TGGCTCGTCAACAAATTAAA+AGG | 0.258287 | 7.1:+32206943 | MS.gene99505:CDS |
| TGAACAAGGTTGGATCTTAC+TGG | 0.286424 | 7.1:+32205047 | MS.gene99505:CDS |
| AACTACTGTTTCTGGTTACT+TGG | 0.322844 | 7.1:+32207512 | MS.gene99505:CDS |
| AGGAAAGCTAGCTGATATAG+AGG | 0.343413 | 7.1:+32207539 | MS.gene99505:CDS |
| CTCATAGTTTGTTGCGTCGC+GGG | 0.350732 | 7.1:-32207403 | None:intergenic |
| TAATTTGTTGACGAGCCATT+TGG | 0.400342 | 7.1:-32206938 | None:intergenic |
| GACAGAGTTGAGTTCCTTGT+TGG | 0.400423 | 7.1:-32205083 | None:intergenic |
| CCAGCAGTGAAGTGCAGCTT+TGG | 0.409039 | 7.1:-32207618 | None:intergenic |
| CTTTGGTCCCTCGGATGTAA+TGG | 0.437677 | 7.1:-32207601 | None:intergenic |
| GTTTCTGGTTACTTGGAGAA+AGG | 0.453263 | 7.1:+32207519 | MS.gene99505:CDS |
| GCATGAAGAAAACAAGGAAA+AGG | 0.453741 | 7.1:+32207640 | MS.gene99505:CDS |
| CCAAAGCTGCACTTCACTGC+TGG | 0.476094 | 7.1:+32207618 | MS.gene99505:CDS |
| TCACTGTCAAGCAGCATTGA+AGG | 0.491753 | 7.1:+32206910 | MS.gene99505:CDS |
| ATTCCTCAAGTGTGTGAAGT+AGG | 0.513172 | 7.1:+32207459 | MS.gene99505:CDS |
| GAAGTGCAGCTTTGGTCCCT+CGG | 0.517935 | 7.1:-32207610 | None:intergenic |
| CATGAAGAAAACAAGGAAAA+GGG | 0.522722 | 7.1:+32207641 | MS.gene99505:CDS |
| GATCAGGTATTGAACAAGGT+TGG | 0.526839 | 7.1:+32205037 | MS.gene99505:CDS |
| TGAATCTGGGTGAATGGATC+AGG | 0.543188 | 7.1:+32205021 | None:intergenic |
| TCATAGTTTGTTGCGTCGCG+GGG | 0.545453 | 7.1:-32207402 | None:intergenic |
| CTGCTGGCATGAAGAAAACA+AGG | 0.556882 | 7.1:+32207634 | MS.gene99505:CDS |
| TCTCACCCACACCAACACTT+TGG | 0.557567 | 7.1:-32207571 | None:intergenic |
| GCATATGAAGTTTCTAGAGA+TGG | 0.564091 | 7.1:+32207666 | MS.gene99505:CDS |
| GGAAAGCTAGCTGATATAGA+GGG | 0.565162 | 7.1:+32207540 | MS.gene99505:CDS |
| ACTCATAGTTTGTTGCGTCG+CGG | 0.599993 | 7.1:-32207404 | None:intergenic |
| TGAAGACCAAAGTGTTGGTG+TGG | 0.610783 | 7.1:+32207565 | MS.gene99505:CDS |
| GGGAATGAAGACCAAAGTGT+TGG | 0.613612 | 7.1:+32207560 | MS.gene99505:CDS |
| AACAAGGAACTCAACTCTGT+CGG | 0.617344 | 7.1:+32205085 | MS.gene99505:CDS |
| GTTCAGCAAGAAAGCCAACA+AGG | 0.625594 | 7.1:+32205069 | MS.gene99505:CDS |
| TAGCCTACTTCACACACTTG+AGG | 0.632117 | 7.1:-32207462 | None:intergenic |
| GCATTGAAGGAGGAACCAAA+TGG | 0.635369 | 7.1:+32206923 | MS.gene99505:CDS |
| TGGTCCCTCGGATGTAATGG+CGG | 0.643277 | 7.1:-32207598 | None:intergenic |
| CTGTCAAGCAGCATTGAAGG+AGG | 0.660543 | 7.1:+32206913 | MS.gene99505:CDS |
| AGTTACCGCCATTACATCCG+AGG | 0.662266 | 7.1:+32207593 | MS.gene99505:CDS |
| AATGGATCAGGTATTGAACA+AGG | 0.667362 | 7.1:+32205033 | None:intergenic |
| GAAGACCAAAGTGTTGGTGT+GGG | 0.680068 | 7.1:+32207566 | MS.gene99505:CDS |
| GTTACCGCCATTACATCCGA+GGG | 0.681636 | 7.1:+32207594 | MS.gene99505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTATTTAATGATTATT+TGG | + | chr7.1:32205493-32205512 | MS.gene99505:intron | 10.0% |
| !!! | ATAAATAAATAAAAGTTTTG+GGG | + | chr7.1:32205680-32205699 | MS.gene99505:intron | 10.0% |
| !! | AAATAAAAAAAGAGTAACAA+GGG | - | chr7.1:32205158-32205177 | None:intergenic | 15.0% |
| !! | AATAAAGATAATATAAGCTA+TGG | + | chr7.1:32207152-32207171 | MS.gene99505:intron | 15.0% |
| !! | TAAATATTCTACTTTGATTA+AGG | + | chr7.1:32207052-32207071 | MS.gene99505:intron | 15.0% |
| !!! | TAAATAAATAAAAGTTTTGG+GGG | + | chr7.1:32205681-32205700 | MS.gene99505:intron | 15.0% |
| !! | AAGTATTCAACTAAAAAAAG+AGG | - | chr7.1:32205203-32205222 | None:intergenic | 20.0% |
| !! | AATAAAAAAAGAGTAACAAG+GGG | - | chr7.1:32205157-32205176 | None:intergenic | 20.0% |
| !! | AATTAAACTGTATCTAAACA+GGG | - | chr7.1:32207078-32207097 | None:intergenic | 20.0% |
| !! | CAAATAAAAAAAGAGTAACA+AGG | - | chr7.1:32205159-32205178 | None:intergenic | 20.0% |
| !! | TAATTAAACTGTATCTAAAC+AGG | - | chr7.1:32207079-32207098 | None:intergenic | 20.0% |
| !!! | AATTTTTCATGCATAATATG+TGG | + | chr7.1:32206322-32206341 | MS.gene99505:intron | 20.0% |
| !!! | ACTTAATTGAACTTATTTTC+TGG | - | chr7.1:32207265-32207284 | None:intergenic | 20.0% |
| !!! | ATTTTTCATGCATAATATGT+GGG | + | chr7.1:32206323-32206342 | MS.gene99505:intron | 20.0% |
| !!! | TATTTGTCGAATTTTAAATC+TGG | + | chr7.1:32205407-32205426 | MS.gene99505:intron | 20.0% |
| ! | ACTCATAAAAAGATTGATCA+AGG | - | chr7.1:32206046-32206065 | None:intergenic | 25.0% |
| ! | ATAAAAAAAGAGTAACAAGG+GGG | - | chr7.1:32205156-32205175 | None:intergenic | 25.0% |
| ! | ATATATCAATCTATAGACAC+AGG | - | chr7.1:32206489-32206508 | None:intergenic | 25.0% |
| ! | ATTTCTTTGATCTGAATATG+AGG | + | chr7.1:32206724-32206743 | MS.gene99505:intron | 25.0% |
| ! | ATTTGTCCATTTATCTTTAC+TGG | + | chr7.1:32206600-32206619 | MS.gene99505:intron | 25.0% |
| ! | GATTTCCATTATCAGTAAAT+GGG | - | chr7.1:32206778-32206797 | None:intergenic | 25.0% |
| ! | TGATTTCCATTATCAGTAAA+TGG | - | chr7.1:32206779-32206798 | None:intergenic | 25.0% |
| ! | TTATATTAACACTCTTCCTT+TGG | + | chr7.1:32206878-32206897 | MS.gene99505:intron | 25.0% |
| ! | TTTATCCCATTTACTGATAA+TGG | + | chr7.1:32206770-32206789 | MS.gene99505:intron | 25.0% |
| ! | TTTCTTTGATCTGAATATGA+GGG | + | chr7.1:32206725-32206744 | MS.gene99505:intron | 25.0% |
| !!! | CAGATTGATTTTTTAATGTC+AGG | - | chr7.1:32206423-32206442 | None:intergenic | 25.0% |
| !!! | TGATAATGACAATGACATTT+TGG | + | chr7.1:32205753-32205772 | MS.gene99505:intron | 25.0% |
| AAAGTCTCACATTTATCCTT+AGG | - | chr7.1:32206372-32206391 | None:intergenic | 30.0% | |
| AAATCATTTGTGAGTCTTGA+GGG | + | chr7.1:32206793-32206812 | MS.gene99505:intron | 30.0% | |
| AACAAAGAACTAGAAAACCA+AGG | - | chr7.1:32206688-32206707 | None:intergenic | 30.0% | |
| AACTGTCCAGTAAAGATAAA+TGG | - | chr7.1:32206609-32206628 | None:intergenic | 30.0% | |
| AATAGAAATTAGGAAGCCTA+AGG | + | chr7.1:32206353-32206372 | MS.gene99505:intron | 30.0% | |
| ACAGTGACTAAAAAAACCAA+AGG | - | chr7.1:32206897-32206916 | None:intergenic | 30.0% | |
| CATGAAGAAAACAAGGAAAA+GGG | + | chr7.1:32207641-32207660 | MS.gene99505:CDS | 30.0% | |
| CATGTTAGAGGGTAAAATTA+AGG | - | chr7.1:32207301-32207320 | None:intergenic | 30.0% | |
| CTGGCACATAAACATTAATT+GGG | - | chr7.1:32205866-32205885 | None:intergenic | 30.0% | |
| GGGTTTAGTGAATAGAAATT+AGG | + | chr7.1:32206343-32206362 | MS.gene99505:intron | 30.0% | |
| TAAAAAAAGAGTAACAAGGG+GGG | - | chr7.1:32205155-32205174 | None:intergenic | 30.0% | |
| TAAGAATCATAAGCAAGACA+TGG | - | chr7.1:32205242-32205261 | None:intergenic | 30.0% | |
| TAAGGATAAATGTGAGACTT+TGG | + | chr7.1:32206371-32206390 | MS.gene99505:intron | 30.0% | |
| TAATGACTTAACAATTGCCT+TGG | + | chr7.1:32206668-32206687 | MS.gene99505:intron | 30.0% | |
| ! | CTTAATTTTACCCTCTAACA+TGG | + | chr7.1:32207299-32207318 | MS.gene99505:intron | 30.0% |
| ! | CTTTGTTTGGGAAAATATGT+TGG | + | chr7.1:32206640-32206659 | MS.gene99505:intron | 30.0% |
| ! | TTCAACATTTGCTAGTCTAA+TGG | - | chr7.1:32206830-32206849 | None:intergenic | 30.0% |
| ! | TTTTTCTGTGTTTCTCAATC+AGG | + | chr7.1:32206988-32207007 | MS.gene99505:intron | 30.0% |
| !! | CTCAGCTATCTGATTTTAAT+TGG | + | chr7.1:32205363-32205382 | MS.gene99505:intron | 30.0% |
| !! | GTAAAAGTATTAAGTAGTGC+TGG | + | chr7.1:32206077-32206096 | MS.gene99505:intron | 30.0% |
| !! | TTGAAACTTTTCGCTTTGTT+TGG | + | chr7.1:32206627-32206646 | MS.gene99505:intron | 30.0% |
| !!! | AATGACATTTTGGTTGTGAT+CGG | + | chr7.1:32205763-32205782 | MS.gene99505:intron | 30.0% |
| !!! | AGCTATCTGATTTTAATTGG+TGG | + | chr7.1:32205366-32205385 | MS.gene99505:intron | 30.0% |
| !!! | ATGTCGTAAGCTATTTTTGT+TGG | + | chr7.1:32207209-32207228 | MS.gene99505:intron | 30.0% |
| !!! | GCATGAATTCTAGAATGTTT+TGG | + | chr7.1:32205974-32205993 | MS.gene99505:intron | 30.0% |
| !!! | TGAAACTTTTCGCTTTGTTT+GGG | + | chr7.1:32206628-32206647 | MS.gene99505:intron | 30.0% |
| !!! | TTGGTTTTCTAGTTCTTTGT+TGG | + | chr7.1:32206687-32206706 | MS.gene99505:intron | 30.0% |
| AAAAAAAGAGTAACAAGGGG+GGG | - | chr7.1:32205154-32205173 | None:intergenic | 35.0% | |
| ACACATACATGCATGTACTT+TGG | + | chr7.1:32205318-32205337 | MS.gene99505:intron | 35.0% | |
| AGAACACCAAGTATTCAACA+TGG | - | chr7.1:32206169-32206188 | None:intergenic | 35.0% | |
| ATGATACCTTACCATGTTAG+AGG | - | chr7.1:32207313-32207332 | None:intergenic | 35.0% | |
| ATTCTCTTCACAAAGGAAGT+CGG | - | chr7.1:32205434-32205453 | None:intergenic | 35.0% | |
| CACATACATGCATGTACTTT+GGG | + | chr7.1:32205319-32205338 | MS.gene99505:intron | 35.0% | |
| CCAAGTAAGTTTCATATCCA+GGG | - | chr7.1:32205632-32205651 | None:intergenic | 35.0% | |
| CCAATTAATGTTTATGTGCC+AGG | + | chr7.1:32205864-32205883 | MS.gene99505:intron | 35.0% | |
| CCTGGCACATAAACATTAAT+TGG | - | chr7.1:32205867-32205886 | None:intergenic | 35.0% | |
| CTACATATGAGTTTACCAGT+AGG | + | chr7.1:32206129-32206148 | MS.gene99505:intron | 35.0% | |
| GAAATCATTTGTGAGTCTTG+AGG | + | chr7.1:32206792-32206811 | MS.gene99505:intron | 35.0% | |
| GAACACCAAGTATTCAACAT+GGG | - | chr7.1:32206168-32206187 | None:intergenic | 35.0% | |
| GATTGGTAGGCTTAAAAACT+TGG | - | chr7.1:32205893-32205912 | None:intergenic | 35.0% | |
| GATTTCCCATGTTGAATACT+TGG | + | chr7.1:32206160-32206179 | MS.gene99505:intron | 35.0% | |
| GCATGAAGAAAACAAGGAAA+AGG | + | chr7.1:32207640-32207659 | MS.gene99505:CDS | 35.0% | |
| GGTTTGTGTATCAGTAAAGA+GGG | + | chr7.1:32205995-32206014 | MS.gene99505:intron | 35.0% | |
| GTATTCAACATGGGAAATCA+AGG | - | chr7.1:32206159-32206178 | None:intergenic | 35.0% | |
| GTTTGTGTATCAGTAAAGAG+GGG | + | chr7.1:32205996-32206015 | MS.gene99505:intron | 35.0% | |
| TAAAGTCACATGATGCACAA+AGG | - | chr7.1:32205826-32205845 | None:intergenic | 35.0% | |
| TAAATGGACAAATACCTCTC+CGG | - | chr7.1:32206593-32206612 | None:intergenic | 35.0% | |
| TCAGAAGAGAAATACAGTCA+CGG | - | chr7.1:32206106-32206125 | None:intergenic | 35.0% | |
| TCCAAGTAAGTTTCATATCC+AGG | - | chr7.1:32205633-32205652 | None:intergenic | 35.0% | |
| TGATACCTTACCATGTTAGA+GGG | - | chr7.1:32207312-32207331 | None:intergenic | 35.0% | |
| TGGCTCGTCAACAAATTAAA+AGG | + | chr7.1:32206943-32206962 | MS.gene99505:CDS | 35.0% | |
| TTGAGATCGTACAACCAAAT+TGG | - | chr7.1:32205463-32205482 | None:intergenic | 35.0% | |
| TTTGATCTGAATATGAGGGA+AGG | + | chr7.1:32206729-32206748 | MS.gene99505:intron | 35.0% | |
| ! | AAGGAGTATGATCTACCAAT+AGG | + | chr7.1:32207372-32207391 | MS.gene99505:intron | 35.0% |
| ! | GCATATGAAGTTTCTAGAGA+TGG | + | chr7.1:32207666-32207685 | MS.gene99505:CDS | 35.0% |
| ! | TGGTTTGTGTATCAGTAAAG+AGG | + | chr7.1:32205994-32206013 | MS.gene99505:intron | 35.0% |
| ! | TTTTAAGCCTACCAATCTAG+CGG | + | chr7.1:32205896-32205915 | MS.gene99505:intron | 35.0% |
| ! | TTTTACCCTCTAACATGGTA+AGG | + | chr7.1:32207304-32207323 | MS.gene99505:intron | 35.0% |
| !! | AACTACTGTTTCTGGTTACT+TGG | + | chr7.1:32207512-32207531 | MS.gene99505:CDS | 35.0% |
| !! | ATGGTAAGGTATCATTTTGC+AGG | + | chr7.1:32207318-32207337 | MS.gene99505:intron | 35.0% |
| !! | CATGTGAAGCATTGGTTTAT+CGG | + | chr7.1:32205925-32205944 | MS.gene99505:intron | 35.0% |
| !! | TAATTTGTTGACGAGCCATT+TGG | - | chr7.1:32206941-32206960 | None:intergenic | 35.0% |
| !!! | ATGACATTTTGGTTGTGATC+GGG | + | chr7.1:32205764-32205783 | MS.gene99505:intron | 35.0% |
| !!! | GTTTATTTTGCCTCTGTTGT+AGG | + | chr7.1:32206227-32206246 | MS.gene99505:intron | 35.0% |
| AAATGTGAGACTTTGGCGTT+GGG | + | chr7.1:32206378-32206397 | MS.gene99505:intron | 40.0% | |
| AACAAGGAACTCAACTCTGT+CGG | + | chr7.1:32205085-32205104 | MS.gene99505:CDS | 40.0% | |
| AAGAGAATCCAGGACCAATT+TGG | + | chr7.1:32205446-32205465 | MS.gene99505:intron | 40.0% | |
| ACATGTTTATGCCGCTAGAT+TGG | - | chr7.1:32205910-32205929 | None:intergenic | 40.0% | |
| ACTCCAATATCCTACAACAG+AGG | - | chr7.1:32206240-32206259 | None:intergenic | 40.0% | |
| AGGAAAGCTAGCTGATATAG+AGG | + | chr7.1:32207539-32207558 | MS.gene99505:CDS | 40.0% | |
| ATTCCTCAAGTGTGTGAAGT+AGG | + | chr7.1:32207459-32207478 | MS.gene99505:CDS | 40.0% | |
| CCCTGGATATGAAACTTACT+TGG | + | chr7.1:32205629-32205648 | MS.gene99505:intron | 40.0% | |
| GGAAAGCTAGCTGATATAGA+GGG | + | chr7.1:32207540-32207559 | MS.gene99505:CDS | 40.0% | |
| GGCATAAACATGTGAAGCAT+TGG | + | chr7.1:32205917-32205936 | MS.gene99505:intron | 40.0% | |
| GGCTTAAAAACTTGGATTCC+TGG | - | chr7.1:32205885-32205904 | None:intergenic | 40.0% | |
| TAAATGTGAGACTTTGGCGT+TGG | + | chr7.1:32206377-32206396 | MS.gene99505:intron | 40.0% | |
| TCCTTCAGCAACTCTGTTAA+TGG | - | chr7.1:32207357-32207376 | None:intergenic | 40.0% | |
| TGAACAAGGTTGGATCTTAC+TGG | + | chr7.1:32205047-32205066 | MS.gene99505:CDS | 40.0% | |
| TGGGGGAGAACTGTAAAATT+CGG | + | chr7.1:32205698-32205717 | MS.gene99505:intron | 40.0% | |
| TGTGCATCATGTGACTTTAG+AGG | + | chr7.1:32205827-32205846 | MS.gene99505:intron | 40.0% | |
| TTCCTTTGTGAAGAGAATCC+AGG | + | chr7.1:32205436-32205455 | MS.gene99505:intron | 40.0% | |
| TTGCCTCTGTTGTAGGATAT+TGG | + | chr7.1:32206234-32206253 | MS.gene99505:intron | 40.0% | |
| ! | GTCGATTGATTTCGAATCGA+TGG | + | chr7.1:32205533-32205552 | MS.gene99505:intron | 40.0% |
| !! | GATCAGGTATTGAACAAGGT+TGG | + | chr7.1:32205037-32205056 | MS.gene99505:CDS | 40.0% |
| !! | GTTTCTGGTTACTTGGAGAA+AGG | + | chr7.1:32207519-32207538 | MS.gene99505:CDS | 40.0% |
| !!! | ATCAATTTTGAAGCTGACGC+CGG | + | chr7.1:32206571-32206590 | MS.gene99505:intron | 40.0% |
| !!! | GAGTCGAGATGTGTTGTTTT+GGG | + | chr7.1:32205601-32205620 | MS.gene99505:intron | 40.0% |
| !!! | TGAGTCGAGATGTGTTGTTT+TGG | + | chr7.1:32205600-32205619 | MS.gene99505:intron | 40.0% |
| AGGTGACAGCTTGATTCCAA+AGG | - | chr7.1:32206026-32206045 | None:intergenic | 45.0% | |
| CGCTTCACAACTACTGTTTC+TGG | + | chr7.1:32207504-32207523 | MS.gene99505:CDS | 45.0% | |
| CTGCTGGCATGAAGAAAACA+AGG | + | chr7.1:32207634-32207653 | MS.gene99505:CDS | 45.0% | |
| GACAGAGTTGAGTTCCTTGT+TGG | - | chr7.1:32205086-32205105 | None:intergenic | 45.0% | |
| GCATTGAAGGAGGAACCAAA+TGG | + | chr7.1:32206923-32206942 | MS.gene99505:CDS | 45.0% | |
| GCCATTAACAGAGTTGCTGA+AGG | + | chr7.1:32207353-32207372 | MS.gene99505:intron | 45.0% | |
| GGAAATCAAGGAAAGCCTAC+TGG | - | chr7.1:32206147-32206166 | None:intergenic | 45.0% | |
| GGCGGTGTAACTAGTAAACT+AGG | + | chr7.1:32205792-32205811 | MS.gene99505:intron | 45.0% | |
| GGGAATGAAGACCAAAGTGT+TGG | + | chr7.1:32207560-32207579 | MS.gene99505:CDS | 45.0% | |
| GGTGACAGCTTGATTCCAAA+GGG | - | chr7.1:32206025-32206044 | None:intergenic | 45.0% | |
| GTCCTGGATTCTCTTCACAA+AGG | - | chr7.1:32205441-32205460 | None:intergenic | 45.0% | |
| GTTCAGCAAGAAAGCCAACA+AGG | + | chr7.1:32205069-32205088 | MS.gene99505:CDS | 45.0% | |
| GTTTATGCCGCTAGATTGGT+AGG | - | chr7.1:32205906-32205925 | None:intergenic | 45.0% | |
| TAGCCTACTTCACACACTTG+AGG | - | chr7.1:32207465-32207484 | None:intergenic | 45.0% | |
| TCGTACAACCAAATTGGTCC+TGG | - | chr7.1:32205457-32205476 | None:intergenic | 45.0% | |
| ! | TCACTGTCAAGCAGCATTGA+AGG | + | chr7.1:32206910-32206929 | MS.gene99505:CDS | 45.0% |
| !! | ACTCATAGTTTGTTGCGTCG+CGG | - | chr7.1:32207407-32207426 | None:intergenic | 45.0% |
| !! | GAAGACCAAAGTGTTGGTGT+GGG | + | chr7.1:32207566-32207585 | MS.gene99505:CDS | 45.0% |
| !! | TGAAGACCAAAGTGTTGGTG+TGG | + | chr7.1:32207565-32207584 | MS.gene99505:CDS | 45.0% |
| !!! | ACATTTTGGTTGTGATCGGG+AGG | + | chr7.1:32205767-32205786 | MS.gene99505:intron | 45.0% |
| !!! | ATTTTGGTTGTGATCGGGAG+GGG | + | chr7.1:32205769-32205788 | MS.gene99505:intron | 45.0% |
| !!! | CATTTTGGTTGTGATCGGGA+GGG | + | chr7.1:32205768-32205787 | MS.gene99505:intron | 45.0% |
| !!! | TGTTGTTTTGGGATTCTCCC+TGG | + | chr7.1:32205612-32205631 | MS.gene99505:intron | 45.0% |
| !! | TATTTATTTATAAAAAAACA+CGG | - | chr7.1:32205671-32205690 | None:intergenic | 5.0% |
| !!! | TATAAATAAATAAAAGTTTT+GGG | + | chr7.1:32205679-32205698 | MS.gene99505:intron | 5.0% |
| !!! | TTATAAATAAATAAAAGTTT+TGG | + | chr7.1:32205678-32205697 | MS.gene99505:intron | 5.0% |
| AGTAAAGAGGGGCTACCCTT+TGG | + | chr7.1:32206007-32206026 | MS.gene99505:intron | 50.0% | |
| AGTTACCGCCATTACATCCG+AGG | + | chr7.1:32207593-32207612 | MS.gene99505:CDS | 50.0% | |
| CTTTGGTCCCTCGGATGTAA+TGG | - | chr7.1:32207604-32207623 | None:intergenic | 50.0% | |
| GTTACCGCCATTACATCCGA+GGG | + | chr7.1:32207594-32207613 | MS.gene99505:CDS | 50.0% | |
| TCGCGGGGAAAGATTCCTAT+TGG | - | chr7.1:32207390-32207409 | None:intergenic | 50.0% | |
| TCTCACCCACACCAACACTT+TGG | - | chr7.1:32207574-32207593 | None:intergenic | 50.0% | |
| ! | CTGTCAAGCAGCATTGAAGG+AGG | + | chr7.1:32206913-32206932 | MS.gene99505:CDS | 50.0% |
| !! | CTCATAGTTTGTTGCGTCGC+GGG | - | chr7.1:32207406-32207425 | None:intergenic | 50.0% |
| !! | TCATAGTTTGTTGCGTCGCG+GGG | - | chr7.1:32207405-32207424 | None:intergenic | 50.0% |
| !! | TTTTGGTTGTGATCGGGAGG+GGG | + | chr7.1:32205770-32205789 | MS.gene99505:intron | 50.0% |
| CCAAAGCTGCACTTCACTGC+TGG | + | chr7.1:32207618-32207637 | MS.gene99505:CDS | 55.0% | |
| CCAGCAGTGAAGTGCAGCTT+TGG | - | chr7.1:32207621-32207640 | None:intergenic | 55.0% | |
| TGGTCCCTCGGATGTAATGG+CGG | - | chr7.1:32207601-32207620 | None:intergenic | 55.0% | |
| TTTGGTTGTGATCGGGAGGG+GGG | + | chr7.1:32205771-32205790 | MS.gene99505:intron | 55.0% | |
| ! | GAAGTGCAGCTTTGGTCCCT+CGG | - | chr7.1:32207613-32207632 | None:intergenic | 55.0% |
| ! | TGGCGTTGGGCACAGGATTA+TGG | + | chr7.1:32206391-32206410 | MS.gene99505:intron | 55.0% |
| !!! | TTTTGAAGCTGACGCCGGAG+AGG | + | chr7.1:32206576-32206595 | MS.gene99505:intron | 55.0% |
| ! | ACAAGGGGGGGTGTAGCAGT+AGG | - | chr7.1:32205142-32205161 | None:intergenic | 60.0% |
| ! | CAAGGGGGGGTGTAGCAGTA+GGG | - | chr7.1:32205141-32205160 | None:intergenic | 60.0% |
| ! | GAGACTTTGGCGTTGGGCAC+AGG | + | chr7.1:32206384-32206403 | MS.gene99505:intron | 60.0% |
| GGTTGTGATCGGGAGGGGGG+CGG | + | chr7.1:32205774-32205793 | MS.gene99505:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32205034 | 32207710 | 32205034 | ID=MS.gene99505 |
| chr7.1 | mRNA | 32205034 | 32207710 | 32205034 | ID=MS.gene99505.t1;Parent=MS.gene99505 |
| chr7.1 | exon | 32205034 | 32205120 | 32205034 | ID=MS.gene99505.t1.exon1;Parent=MS.gene99505.t1 |
| chr7.1 | CDS | 32205034 | 32205120 | 32205034 | ID=cds.MS.gene99505.t1;Parent=MS.gene99505.t1 |
| chr7.1 | exon | 32206910 | 32206964 | 32206910 | ID=MS.gene99505.t1.exon2;Parent=MS.gene99505.t1 |
| chr7.1 | CDS | 32206910 | 32206964 | 32206910 | ID=cds.MS.gene99505.t1;Parent=MS.gene99505.t1 |
| chr7.1 | exon | 32207394 | 32207710 | 32207394 | ID=MS.gene99505.t1.exon3;Parent=MS.gene99505.t1 |
| chr7.1 | CDS | 32207394 | 32207710 | 32207394 | ID=cds.MS.gene99505.t1;Parent=MS.gene99505.t1 |
| Gene Sequence |
| Protein sequence |
