Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93374.t1 | XP_003604558.1 | 100 | 170 | 0 | 0 | 1 | 170 | 1 | 170 | 1.40E-91 | 345.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93374.t1 | Q9M015 | 75.9 | 170 | 41 | 0 | 1 | 170 | 1 | 170 | 2.5e-73 | 276.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93374.t1 | G7JLS2 | 100.0 | 170 | 0 | 0 | 1 | 170 | 1 | 170 | 1.0e-91 | 345.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052793 | MS.gene93374 | 0.801305 | 9.59E-49 | -1.69E-46 |
| MS.gene054413 | MS.gene93374 | 0.816375 | 5.71E-52 | -1.69E-46 |
| MS.gene056530 | MS.gene93374 | 0.809526 | 1.81E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93374 | MS.gene069002 | PPI |
| MS.gene93374 | MS.gene33453 | PPI |
| MS.gene78559 | MS.gene93374 | PPI |
| MS.gene99505 | MS.gene93374 | PPI |
| MS.gene93374 | MS.gene052793 | PPI |
| MS.gene071033 | MS.gene93374 | PPI |
| MS.gene33706 | MS.gene93374 | PPI |
| MS.gene95675 | MS.gene93374 | PPI |
| MS.gene93374 | MS.gene55328 | PPI |
| MS.gene85907 | MS.gene93374 | PPI |
| MS.gene53126 | MS.gene93374 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93374.t1 | MTR_4g014490 | 100.000 | 170 | 0 | 0 | 1 | 170 | 1 | 170 | 5.87e-124 | 346 |
| MS.gene93374.t1 | MTR_7g070000 | 84.706 | 170 | 26 | 0 | 1 | 170 | 1 | 170 | 1.91e-104 | 296 |
| MS.gene93374.t1 | MTR_5g043190 | 51.205 | 166 | 78 | 1 | 8 | 170 | 15 | 180 | 1.91e-59 | 183 |
| MS.gene93374.t1 | MTR_4g109140 | 46.552 | 174 | 89 | 1 | 1 | 170 | 1 | 174 | 1.86e-55 | 172 |
| MS.gene93374.t1 | MTR_7g108775 | 35.354 | 99 | 62 | 2 | 56 | 153 | 33 | 130 | 4.20e-15 | 69.3 |
| MS.gene93374.t1 | MTR_7g108775 | 36.842 | 95 | 58 | 2 | 56 | 149 | 33 | 126 | 5.30e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93374.t1 | AT3G08890 | 77.647 | 170 | 38 | 0 | 1 | 170 | 1 | 170 | 8.08e-100 | 285 |
| MS.gene93374.t1 | AT3G08890 | 77.647 | 170 | 38 | 0 | 1 | 170 | 1 | 170 | 8.08e-100 | 285 |
| MS.gene93374.t1 | AT5G37070 | 78.824 | 170 | 36 | 0 | 1 | 170 | 1 | 170 | 1.02e-98 | 282 |
| MS.gene93374.t1 | AT5G01610 | 75.882 | 170 | 41 | 0 | 1 | 170 | 1 | 170 | 2.15e-96 | 276 |
| MS.gene93374.t1 | AT5G01610 | 75.882 | 170 | 41 | 0 | 1 | 170 | 1 | 170 | 2.15e-96 | 276 |
| MS.gene93374.t1 | AT2G03350 | 50.000 | 164 | 79 | 1 | 7 | 167 | 12 | 175 | 2.83e-53 | 167 |
| MS.gene93374.t1 | AT1G02816 | 25.217 | 115 | 83 | 2 | 57 | 168 | 35 | 149 | 1.50e-12 | 62.8 |
| MS.gene93374.t1 | AT4G02370 | 27.368 | 95 | 68 | 1 | 56 | 149 | 34 | 128 | 1.35e-11 | 60.1 |
| MS.gene93374.t1 | AT4G02360 | 29.358 | 109 | 74 | 3 | 51 | 157 | 25 | 132 | 1.98e-11 | 59.3 |
Find 40 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCTTCACCACTGTTAC+TGG | 0.210400 | 4.1:-81605515 | MS.gene93374:CDS |
| CACCACTGTTACTGGTTATC+TGG | 0.249379 | 4.1:-81605507 | MS.gene93374:CDS |
| TGAAGACAAAAGTTATTATC+TGG | 0.261455 | 4.1:-81605454 | MS.gene93374:CDS |
| CTTCGATCCCTCGGAGAAAA+TGG | 0.294455 | 4.1:+81605418 | None:intergenic |
| GCCATTACCAGAGTTGTTAA+AGG | 0.295014 | 4.1:-81605666 | MS.gene93374:CDS |
| TGGTTGGTCAACAAAGTAAA+AGG | 0.300821 | 4.1:-81606942 | MS.gene93374:intron |
| TACTTTGTTGACCAACCATT+TGG | 0.339849 | 4.1:+81606947 | None:intergenic |
| GACAGAATTAAGCTCCTTGC+TGG | 0.374345 | 4.1:+81608024 | None:intergenic |
| TCAACAAGGTTGGATCCTAT+TGG | 0.402846 | 4.1:-81608060 | MS.gene93374:CDS |
| TCCTTTAACAACTCTGGTAA+TGG | 0.418016 | 4.1:+81605665 | None:intergenic |
| GGCTTTCTGATTGAACCAAT+AGG | 0.431334 | 4.1:+81608045 | None:intergenic |
| GGTCTGCGAAGTAGGCTATA+AGG | 0.432562 | 4.1:-81605552 | MS.gene93374:CDS |
| AAGGAGTATGATCTACCAAT+AGG | 0.443273 | 4.1:-81605647 | MS.gene93374:CDS |
| AGGAAAGCTAGCAGACATAG+AGG | 0.449690 | 4.1:-81605480 | MS.gene93374:CDS |
| ATTCCTCAGGTCTGCGAAGT+AGG | 0.457321 | 4.1:-81605560 | MS.gene93374:CDS |
| CACATAGAGCTTCGATCCCT+CGG | 0.465720 | 4.1:+81605409 | None:intergenic |
| TCACGAGGAAAGATTCCTAT+TGG | 0.469668 | 4.1:+81605632 | None:intergenic |
| TACGAATTCAACGAAGAGAC+TGG | 0.481424 | 4.1:-81605599 | MS.gene93374:CDS |
| GCTTGAAGTCTTCATTCCTC+AGG | 0.483186 | 4.1:-81605573 | MS.gene93374:CDS |
| GATCAAGTATTCAACAAGGT+TGG | 0.497292 | 4.1:-81608070 | MS.gene93374:CDS |
| GAAGACAAAAGTTATTATCT+GGG | 0.508796 | 4.1:-81605453 | MS.gene93374:CDS |
| GCATATGATGTTACAAGAGA+TGG | 0.523342 | 4.1:-81605353 | MS.gene93374:CDS |
| TCGAAGCTCTATGTGACTGC+TGG | 0.534882 | 4.1:-81605401 | MS.gene93374:CDS |
| GTATCGAAGGCGGAACCAAA+TGG | 0.539035 | 4.1:-81606962 | MS.gene93374:CDS |
| GTTACTGGTTATCTGGAGAA+AGG | 0.540770 | 4.1:-81605500 | MS.gene93374:CDS |
| GCATGAAGAAAACAAGGAGT+AGG | 0.544902 | 4.1:-81605379 | MS.gene93374:CDS |
| TCATACTCCTTTAACAACTC+TGG | 0.548889 | 4.1:+81605659 | None:intergenic |
| CTGCTGGCATGAAGAAAACA+AGG | 0.561931 | 4.1:-81605385 | MS.gene93374:CDS |
| AGCAAGGAGCTTAATTCTGT+CGG | 0.592969 | 4.1:-81608022 | MS.gene93374:CDS |
| CATGAAGAAAACAAGGAGTA+GGG | 0.600568 | 4.1:-81605378 | MS.gene93374:CDS |
| TCGTAGTTTGTTGCATCACG+AGG | 0.603536 | 4.1:+81605617 | None:intergenic |
| GGAAAGCTAGCAGACATAGA+GGG | 0.604204 | 4.1:-81605479 | MS.gene93374:CDS |
| CGAAGGCGGAACCAAATGGT+TGG | 0.621013 | 4.1:-81606958 | MS.gene93374:CDS |
| GTTCAATCAGAAAGCCAGCA+AGG | 0.622010 | 4.1:-81608038 | MS.gene93374:CDS |
| TCACTGTCGAACAGTATCGA+AGG | 0.655695 | 4.1:-81606975 | MS.gene93374:CDS |
| TAGCCTACTTCGCAGACCTG+AGG | 0.660590 | 4.1:+81605557 | None:intergenic |
| CTCCAGATAACCAGTAACAG+TGG | 0.669904 | 4.1:+81605505 | None:intergenic |
| AGTGGTGAAGAAACGCAAGA+CGG | 0.699708 | 4.1:+81605523 | None:intergenic |
| AATGGATCAAGTATTCAACA+AGG | 0.730089 | 4.1:-81608074 | MS.gene93374:CDS |
| CTGTCGAACAGTATCGAAGG+CGG | 0.747673 | 4.1:-81606972 | MS.gene93374:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCCAAAATTATTAATTTT+TGG | - | chr4.1:81605478-81605497 | MS.gene93374:CDS | 10.0% |
| !!! | TATCCAAAAATTAATAATTT+TGG | + | chr4.1:81605484-81605503 | None:intergenic | 10.0% |
| !! | AAAATAATTAAACAGTGAAA+AGG | - | chr4.1:81607219-81607238 | MS.gene93374:intron | 15.0% |
| !! | TCTAATAACAAAATTATAGA+AGG | + | chr4.1:81607355-81607374 | None:intergenic | 15.0% |
| !! | AAAAAACTGGAAAATTGAAA+AGG | + | chr4.1:81605437-81605456 | None:intergenic | 20.0% |
| !! | AAAAACTGGAAAATTGAAAA+GGG | + | chr4.1:81605436-81605455 | None:intergenic | 20.0% |
| !! | AAAATCACCTAAAATTCTAA+CGG | + | chr4.1:81605920-81605939 | None:intergenic | 20.0% |
| !! | AATAAGTATAAACATCATGA+AGG | - | chr4.1:81607485-81607504 | MS.gene93374:intron | 20.0% |
| !! | AGATGATGAATATAAAAAAC+TGG | + | chr4.1:81605450-81605469 | None:intergenic | 20.0% |
| !! | ATAAATGTTTGAGCAAAATA+TGG | + | chr4.1:81606504-81606523 | None:intergenic | 20.0% |
| !! | ATAAGTATAAACATCATGAA+GGG | - | chr4.1:81607486-81607505 | MS.gene93374:intron | 20.0% |
| !! | ATATCTCAATTTCTTCTAAA+TGG | - | chr4.1:81605598-81605617 | MS.gene93374:CDS | 20.0% |
| !! | ATTTAATTCTGATTAAGCAA+GGG | - | chr4.1:81606183-81606202 | MS.gene93374:intron | 20.0% |
| !! | TATTTAATTCTGATTAAGCA+AGG | - | chr4.1:81606182-81606201 | MS.gene93374:intron | 20.0% |
| !! | TTAATATACACCTTAGTAAT+TGG | - | chr4.1:81606976-81606995 | MS.gene93374:CDS | 20.0% |
| !! | TTCTATCAATTTCTCAATTT+GGG | + | chr4.1:81606599-81606618 | None:intergenic | 20.0% |
| !! | TTTCTATCAATTTCTCAATT+TGG | + | chr4.1:81606600-81606619 | None:intergenic | 20.0% |
| !!! | GGATATATTTCTATATTGAA+AGG | - | chr4.1:81607679-81607698 | MS.gene93374:intron | 20.0% |
| !!! | TCACTTATAAATACATTTTC+AGG | + | chr4.1:81606833-81606852 | None:intergenic | 20.0% |
| ! | AAAACTGGAAAATTGAAAAG+GGG | + | chr4.1:81605435-81605454 | None:intergenic | 25.0% |
| ! | AAATTTAGTACTTTGAACCA+TGG | - | chr4.1:81607075-81607094 | MS.gene93374:intron | 25.0% |
| ! | ACTTAATTATATCACTTTGC+AGG | - | chr4.1:81607703-81607722 | MS.gene93374:intron | 25.0% |
| ! | ATGTTTATACTTATTGCTTG+AGG | + | chr4.1:81607480-81607499 | None:intergenic | 25.0% |
| ! | ATTGGAAGGAAAAATTGAAT+TGG | + | chr4.1:81606903-81606922 | None:intergenic | 25.0% |
| ! | CACATCTACTAGTAAAATTA+GGG | + | chr4.1:81606012-81606031 | None:intergenic | 25.0% |
| ! | GAAGACAAAAGTTATTATCT+GGG | - | chr4.1:81607951-81607970 | MS.gene93374:intron | 25.0% |
| ! | GAATTGTCTAATTATCCAAA+AGG | - | chr4.1:81607450-81607469 | MS.gene93374:intron | 25.0% |
| ! | TAAGTATAAACATCATGAAG+GGG | - | chr4.1:81607487-81607506 | MS.gene93374:intron | 25.0% |
| ! | TAATTAAACCTCATGGAAAT+TGG | - | chr4.1:81605502-81605521 | MS.gene93374:CDS | 25.0% |
| ! | TAATTAGACAATTCATGAAG+TGG | + | chr4.1:81607444-81607463 | None:intergenic | 25.0% |
| ! | TCAATTGAATTGAATTGATG+CGG | - | chr4.1:81605545-81605564 | MS.gene93374:CDS | 25.0% |
| ! | TCCAAAATGTTTATGTTTGT+TGG | - | chr4.1:81605633-81605652 | MS.gene93374:CDS | 25.0% |
| ! | TCTATTTGACATAGCAATAA+TGG | - | chr4.1:81607637-81607656 | MS.gene93374:intron | 25.0% |
| ! | TGAAGACAAAAGTTATTATC+TGG | - | chr4.1:81607950-81607969 | MS.gene93374:intron | 25.0% |
| ! | TTAATGAGATGATTCTGTTA+CGG | - | chr4.1:81606072-81606091 | MS.gene93374:intron | 25.0% |
| ! | TTAGAGAAGAAATTATCATG+CGG | + | chr4.1:81607150-81607169 | None:intergenic | 25.0% |
| ! | TTGAGAAATTGATAGAAAAC+TGG | - | chr4.1:81606602-81606621 | MS.gene93374:intron | 25.0% |
| ! | TTGATGTAATTACATGCAAT+GGG | + | chr4.1:81606927-81606946 | None:intergenic | 25.0% |
| ! | TTGGAAGGAAAAATTGAATT+GGG | + | chr4.1:81606902-81606921 | None:intergenic | 25.0% |
| ! | TTTGAGCAAAATATGGAAAT+AGG | + | chr4.1:81606497-81606516 | None:intergenic | 25.0% |
| !! | AAAGATGAATTTTCATTGCT+TGG | - | chr4.1:81606367-81606386 | MS.gene93374:intron | 25.0% |
| !! | AAATGTTTATGTTTGTTGGT+AGG | - | chr4.1:81605637-81605656 | MS.gene93374:CDS | 25.0% |
| !! | AATTTACAAGCCTATTTTGT+AGG | - | chr4.1:81606865-81606884 | MS.gene93374:intron | 25.0% |
| !! | ACCAACAAACATAAACATTT+TGG | + | chr4.1:81605637-81605656 | None:intergenic | 25.0% |
| !! | ATTTACAAGCCTATTTTGTA+GGG | - | chr4.1:81606866-81606885 | MS.gene93374:intron | 25.0% |
| !! | GGTCTGTTTATAAGTTATTT+TGG | - | chr4.1:81607099-81607118 | MS.gene93374:intron | 25.0% |
| !! | TTTTGGATAATTAAACCTCA+TGG | - | chr4.1:81605495-81605514 | MS.gene93374:CDS | 25.0% |
| !!! | TATCTCTAAAACTGTAGTAA+TGG | + | chr4.1:81607550-81607569 | None:intergenic | 25.0% |
| AAATAAAGTAGAACCATTGG+TGG | + | chr4.1:81607419-81607438 | None:intergenic | 30.0% | |
| CAGAAAGGTAAGGAAAAAAT+TGG | + | chr4.1:81606724-81606743 | None:intergenic | 30.0% | |
| CATTACTCATTATCTCTAAC+AGG | + | chr4.1:81606289-81606308 | None:intergenic | 30.0% | |
| CCACATCTACTAGTAAAATT+AGG | + | chr4.1:81606013-81606032 | None:intergenic | 30.0% | |
| CTTTCAAAAGTAGAAGTTCA+CGG | - | chr4.1:81605720-81605739 | MS.gene93374:intron | 30.0% | |
| GAAATGGAGAGAATAAACAA+TGG | + | chr4.1:81607525-81607544 | None:intergenic | 30.0% | |
| GAGAAATAAAGTAGAACCAT+TGG | + | chr4.1:81607422-81607441 | None:intergenic | 30.0% | |
| GATTTCAAATCATGTGACAA+AGG | + | chr4.1:81607612-81607631 | None:intergenic | 30.0% | |
| GTTGATGTAATTACATGCAA+TGG | + | chr4.1:81606928-81606947 | None:intergenic | 30.0% | |
| TGAAATCTTAAATGTTGCAC+AGG | + | chr4.1:81606558-81606577 | None:intergenic | 30.0% | |
| TGATGTAATTACATGCAATG+GGG | + | chr4.1:81606926-81606945 | None:intergenic | 30.0% | |
| TTATCTCTAACAGGAAGATA+AGG | + | chr4.1:81606280-81606299 | None:intergenic | 30.0% | |
| TTTCATCAAAAACTAAGAGC+TGG | + | chr4.1:81605953-81605972 | None:intergenic | 30.0% | |
| ! | AACTGTAGTAATGGAAGAAA+TGG | + | chr4.1:81607541-81607560 | None:intergenic | 30.0% |
| ! | CCTAATTTTACTAGTAGATG+TGG | - | chr4.1:81606010-81606029 | MS.gene93374:intron | 30.0% |
| ! | GGTATTTTGTACAACATCAA+AGG | - | chr4.1:81607658-81607677 | MS.gene93374:intron | 30.0% |
| ! | TTATCGGTTAGACAAAAACA+AGG | + | chr4.1:81605852-81605871 | None:intergenic | 30.0% |
| ! | TTTCTCAATTTGGGATTACA+AGG | + | chr4.1:81606590-81606609 | None:intergenic | 30.0% |
| !! | GCTCTTAGTTTTTGATGAAA+AGG | - | chr4.1:81605953-81605972 | MS.gene93374:intron | 30.0% |
| !!! | ACATTTATCTTTTCAAGTCC+TGG | - | chr4.1:81606516-81606535 | MS.gene93374:intron | 30.0% |
| !!! | TTTCCTTGTTTTTGTTGAAC+TGG | + | chr4.1:81605787-81605806 | None:intergenic | 30.0% |
| AACCATGTTTAGATGCTTTG+CGG | - | chr4.1:81606945-81606964 | MS.gene93374:CDS | 35.0% | |
| AACTTATAAACAGACCTCCA+TGG | + | chr4.1:81607095-81607114 | None:intergenic | 35.0% | |
| ACAAGGAAAAATGATACGTG+TGG | - | chr4.1:81605798-81605817 | MS.gene93374:intron | 35.0% | |
| AGGAAAAAATTGGACATGAG+AGG | + | chr4.1:81606714-81606733 | None:intergenic | 35.0% | |
| AGTGAAGCTGTATGAGAAAT+AGG | - | chr4.1:81606104-81606123 | MS.gene93374:intron | 35.0% | |
| ATAAACATCATGAAGGGGTT+AGG | - | chr4.1:81607492-81607511 | MS.gene93374:intron | 35.0% | |
| CATGAAGAAAACAAGGAGTA+GGG | - | chr4.1:81608026-81608045 | MS.gene93374:CDS | 35.0% | |
| CTAACTCATCCCTACAAAAT+AGG | + | chr4.1:81606878-81606897 | None:intergenic | 35.0% | |
| GAAAAAATTGGACATGAGAG+GGG | + | chr4.1:81606712-81606731 | None:intergenic | 35.0% | |
| GACTGCATATCAAAAGAAGA+AGG | + | chr4.1:81606411-81606430 | None:intergenic | 35.0% | |
| GATCAAGTATTCAACAAGGT+TGG | - | chr4.1:81605334-81605353 | MS.gene93374:CDS | 35.0% | |
| GCATATGATGTTACAAGAGA+TGG | - | chr4.1:81608051-81608070 | MS.gene93374:CDS | 35.0% | |
| GGAAAAAATTGGACATGAGA+GGG | + | chr4.1:81606713-81606732 | None:intergenic | 35.0% | |
| GTACCAGTTCAACAAAAACA+AGG | - | chr4.1:81605781-81605800 | MS.gene93374:intron | 35.0% | |
| TAATTACATGCAATGGGGAT+TGG | + | chr4.1:81606921-81606940 | None:intergenic | 35.0% | |
| TACTTTGTTGACCAACCATT+TGG | + | chr4.1:81606460-81606479 | None:intergenic | 35.0% | |
| TATGTGCGCTAATCTTACAA+TGG | - | chr4.1:81607015-81607034 | MS.gene93374:intron | 35.0% | |
| TCAAAACTGAACATGTGAGA+AGG | + | chr4.1:81606313-81606332 | None:intergenic | 35.0% | |
| TCATACTCCTTTAACAACTC+TGG | + | chr4.1:81607748-81607767 | None:intergenic | 35.0% | |
| TCCTTTAACAACTCTGGTAA+TGG | + | chr4.1:81607742-81607761 | None:intergenic | 35.0% | |
| TCGAAAGTCACCAATTACTA+AGG | + | chr4.1:81606989-81607008 | None:intergenic | 35.0% | |
| TGATGAAAAGGTCATGACAT+CGG | - | chr4.1:81605965-81605984 | MS.gene93374:intron | 35.0% | |
| TTTAGTACTTTGAACCATGG+AGG | - | chr4.1:81607078-81607097 | MS.gene93374:intron | 35.0% | |
| ! | AAGGAGTATGATCTACCAAT+AGG | - | chr4.1:81607757-81607776 | MS.gene93374:intron | 35.0% |
| ! | ATTGCTTGAGGAAAACCTTT+TGG | + | chr4.1:81607468-81607487 | None:intergenic | 35.0% |
| ! | CGATTTTATGTATCAGACCA+CGG | + | chr4.1:81605687-81605706 | None:intergenic | 35.0% |
| ! | CTATTTTGTAGGGATGAGTT+AGG | - | chr4.1:81606876-81606895 | MS.gene93374:intron | 35.0% |
| ! | GTAATTGGTGACTTTCGAAA+CGG | - | chr4.1:81606991-81607010 | MS.gene93374:intron | 35.0% |
| ! | TGGTTGGTCAACAAAGTAAA+AGG | - | chr4.1:81606462-81606481 | MS.gene93374:intron | 35.0% |
| ! | TTGGTTGCCGTTAGAATTTT+AGG | - | chr4.1:81605910-81605929 | MS.gene93374:intron | 35.0% |
| !! | CGTGAACTTCTACTTTTGAA+AGG | + | chr4.1:81605722-81605741 | None:intergenic | 35.0% |
| ACCGTTAACTCTTACTTCAG+AGG | - | chr4.1:81605880-81605899 | MS.gene93374:intron | 40.0% | |
| AGATGATTCTGTTACGGTGA+GGG | - | chr4.1:81606078-81606097 | MS.gene93374:intron | 40.0% | |
| AGCAAGGAGCTTAATTCTGT+CGG | - | chr4.1:81605382-81605401 | MS.gene93374:CDS | 40.0% | |
| CTAAACCAGTTTGACACTAG+TGG | - | chr4.1:81607381-81607400 | MS.gene93374:intron | 40.0% | |
| GCATGAAGAAAACAAGGAGT+AGG | - | chr4.1:81608025-81608044 | MS.gene93374:CDS | 40.0% | |
| GCCATTACCAGAGTTGTTAA+AGG | - | chr4.1:81607738-81607757 | MS.gene93374:intron | 40.0% | |
| GGAGAGAATAAACAATGGAG+AGG | + | chr4.1:81607520-81607539 | None:intergenic | 40.0% | |
| GGATCAAAATACTCGCAGTT+AGG | - | chr4.1:81606623-81606642 | MS.gene93374:intron | 40.0% | |
| GGCTTTCTGATTGAACCAAT+AGG | + | chr4.1:81605362-81605381 | None:intergenic | 40.0% | |
| GTATGAAGCAAAACCACCAA+TGG | - | chr4.1:81607403-81607422 | MS.gene93374:intron | 40.0% | |
| TACGAATTCAACGAAGAGAC+TGG | - | chr4.1:81607805-81607824 | MS.gene93374:intron | 40.0% | |
| TCAACAAGGTTGGATCCTAT+TGG | - | chr4.1:81605344-81605363 | MS.gene93374:CDS | 40.0% | |
| TCAATGCGAGACTCAACAAA+GGG | + | chr4.1:81606799-81606818 | None:intergenic | 40.0% | |
| TCACGAGGAAAGATTCCTAT+TGG | + | chr4.1:81607775-81607794 | None:intergenic | 40.0% | |
| TCATACCACTAGTGTCAAAC+TGG | + | chr4.1:81607389-81607408 | None:intergenic | 40.0% | |
| TTAACGGTCCTGATCGTTAT+CGG | + | chr4.1:81605868-81605887 | None:intergenic | 40.0% | |
| TTCAATGCGAGACTCAACAA+AGG | + | chr4.1:81606800-81606819 | None:intergenic | 40.0% | |
| TTGTCTAACCGATAACGATC+AGG | - | chr4.1:81605857-81605876 | MS.gene93374:intron | 40.0% | |
| ! | AACCGCAAAGCATCTAAACA+TGG | + | chr4.1:81606950-81606969 | None:intergenic | 40.0% |
| ! | GTTACTGGTTATCTGGAGAA+AGG | - | chr4.1:81607904-81607923 | MS.gene93374:intron | 40.0% |
| ! | GTTTGTTACAAAGCTAACGC+TGG | + | chr4.1:81606258-81606277 | None:intergenic | 40.0% |
| ! | TTACTTCAGAGGCACATTGT+TGG | - | chr4.1:81605891-81605910 | MS.gene93374:intron | 40.0% |
| ! | TTGTTGGTAGGCAGATTCTA+TGG | - | chr4.1:81605649-81605668 | MS.gene93374:CDS | 40.0% |
| ! | TTTTATGTATCAGACCACGG+TGG | + | chr4.1:81605684-81605703 | None:intergenic | 40.0% |
| ! | TTTTTCTGTGCATCAGCGTA+GGG | - | chr4.1:81606663-81606682 | MS.gene93374:intron | 40.0% |
| !! | GCCTCTGAAGTAAGAGTTAA+CGG | + | chr4.1:81605884-81605903 | None:intergenic | 40.0% |
| AAAAGGTCATGACATCGGTG+AGG | - | chr4.1:81605970-81605989 | MS.gene93374:intron | 45.0% | |
| AAAGGTCATGACATCGGTGA+GGG | - | chr4.1:81605971-81605990 | MS.gene93374:intron | 45.0% | |
| AGAGACGAGAGAAGACAGAA+AGG | + | chr4.1:81606739-81606758 | None:intergenic | 45.0% | |
| AGGAAAGCTAGCAGACATAG+AGG | - | chr4.1:81607924-81607943 | MS.gene93374:intron | 45.0% | |
| AGGCAGATTCTATGGTTACG+TGG | - | chr4.1:81605657-81605676 | MS.gene93374:CDS | 45.0% | |
| AGTGGTGAAGAAACGCAAGA+CGG | + | chr4.1:81607884-81607903 | None:intergenic | 45.0% | |
| ATGAGAGGGGTGAGAATACA+GGG | + | chr4.1:81606699-81606718 | None:intergenic | 45.0% | |
| ATGCAGTTTGAGTGCGATGT+AGG | - | chr4.1:81606157-81606176 | MS.gene93374:intron | 45.0% | |
| ATGGATCTCCACAGTTAGTG+TGG | - | chr4.1:81607034-81607053 | MS.gene93374:intron | 45.0% | |
| CGAGAGAAGACAGAAAGGTA+AGG | + | chr4.1:81606734-81606753 | None:intergenic | 45.0% | |
| CGTTTCTTCACCACTGTTAC+TGG | - | chr4.1:81607889-81607908 | MS.gene93374:intron | 45.0% | |
| CTCCAGATAACCAGTAACAG+TGG | + | chr4.1:81607902-81607921 | None:intergenic | 45.0% | |
| CTGCTGGCATGAAGAAAACA+AGG | - | chr4.1:81608019-81608038 | MS.gene93374:CDS | 45.0% | |
| GACAGAATTAAGCTCCTTGC+TGG | + | chr4.1:81605383-81605402 | None:intergenic | 45.0% | |
| GAGATGATTCTGTTACGGTG+AGG | - | chr4.1:81606077-81606096 | MS.gene93374:intron | 45.0% | |
| GCGTGTTTCCAATTTCCATG+AGG | + | chr4.1:81605513-81605532 | None:intergenic | 45.0% | |
| GCTAACGCTGGATTATGACA+CGG | + | chr4.1:81606246-81606265 | None:intergenic | 45.0% | |
| GCTTGAAGTCTTCATTCCTC+AGG | - | chr4.1:81607831-81607850 | MS.gene93374:intron | 45.0% | |
| GGAAAGCTAGCAGACATAGA+GGG | - | chr4.1:81607925-81607944 | MS.gene93374:intron | 45.0% | |
| GTTCAATCAGAAAGCCAGCA+AGG | - | chr4.1:81605366-81605385 | MS.gene93374:CDS | 45.0% | |
| TACATGCAATGGGGATTGGA+AGG | + | chr4.1:81606917-81606936 | None:intergenic | 45.0% | |
| TGTTCAGTCCACACTAACTG+TGG | + | chr4.1:81607045-81607064 | None:intergenic | 45.0% | |
| ! | AGTGACAACCATTTTCTCCG+AGG | - | chr4.1:81607978-81607997 | MS.gene93374:intron | 45.0% |
| ! | CACCACTGTTACTGGTTATC+TGG | - | chr4.1:81607897-81607916 | MS.gene93374:intron | 45.0% |
| ! | GTGACAACCATTTTCTCCGA+GGG | - | chr4.1:81607979-81607998 | MS.gene93374:intron | 45.0% |
| ! | GTTTTTCTGTGCATCAGCGT+AGG | - | chr4.1:81606662-81606681 | MS.gene93374:intron | 45.0% |
| ! | TCACTGTCGAACAGTATCGA+AGG | - | chr4.1:81606429-81606448 | MS.gene93374:intron | 45.0% |
| !! | TCGTAGTTTGTTGCATCACG+AGG | + | chr4.1:81607790-81607809 | None:intergenic | 45.0% |
| AAGGTCATGACATCGGTGAG+GGG | - | chr4.1:81605972-81605991 | MS.gene93374:intron | 50.0% | |
| ATTCCTCAGGTCTGCGAAGT+AGG | - | chr4.1:81607844-81607863 | MS.gene93374:intron | 50.0% | |
| CACATAGAGCTTCGATCCCT+CGG | + | chr4.1:81607998-81608017 | None:intergenic | 50.0% | |
| CATGAGAGGGGTGAGAATAC+AGG | + | chr4.1:81606700-81606719 | None:intergenic | 50.0% | |
| CTTCGATCCCTCGGAGAAAA+TGG | + | chr4.1:81607989-81608008 | None:intergenic | 50.0% | |
| GATCTGCAACTTAGGTCTGC+AGG | - | chr4.1:81606217-81606236 | MS.gene93374:intron | 50.0% | |
| GGTCTGCGAAGTAGGCTATA+AGG | - | chr4.1:81607852-81607871 | MS.gene93374:intron | 50.0% | |
| GTATCGAAGGCGGAACCAAA+TGG | - | chr4.1:81606442-81606461 | MS.gene93374:intron | 50.0% | |
| GTTGCACAGGTTTCATAGCC+AGG | + | chr4.1:81606545-81606564 | None:intergenic | 50.0% | |
| TCGAAGCTCTATGTGACTGC+TGG | - | chr4.1:81608003-81608022 | MS.gene93374:intron | 50.0% | |
| TTAAGCAAGGGAAAGACGCG+AGG | - | chr4.1:81606195-81606214 | MS.gene93374:intron | 50.0% | |
| ! | CTGTCGAACAGTATCGAAGG+CGG | - | chr4.1:81606432-81606451 | MS.gene93374:intron | 50.0% |
| !!! | CTTTTCAAGTCCTGGACTCC+TGG | - | chr4.1:81606524-81606543 | MS.gene93374:intron | 50.0% |
| AGCTGGGACGGTGACTTGAT+CGG | - | chr4.1:81605759-81605778 | MS.gene93374:intron | 55.0% | |
| CGAAGGCGGAACCAAATGGT+TGG | - | chr4.1:81606446-81606465 | MS.gene93374:intron | 55.0% | |
| GACATCGGTGAGGGGAAATG+TGG | - | chr4.1:81605980-81605999 | MS.gene93374:intron | 55.0% | |
| GACGCGAGGATCTGCAACTT+AGG | - | chr4.1:81606209-81606228 | MS.gene93374:intron | 55.0% | |
| GGTTTCATAGCCAGGAGTCC+AGG | + | chr4.1:81606537-81606556 | None:intergenic | 55.0% | |
| TAGCCTACTTCGCAGACCTG+AGG | + | chr4.1:81607850-81607869 | None:intergenic | 55.0% | |
| TATGGTTACGTGGTCCACCG+TGG | - | chr4.1:81605667-81605686 | MS.gene93374:CDS | 55.0% | |
| TCCTCCTTGTCCTTGCAGCT+GGG | - | chr4.1:81605743-81605762 | MS.gene93374:intron | 55.0% | |
| AAGTCACCGTCCCAGCTGCA+AGG | + | chr4.1:81605756-81605775 | None:intergenic | 60.0% | |
| CCTTGTCCTTGCAGCTGGGA+CGG | - | chr4.1:81605747-81605766 | MS.gene93374:intron | 60.0% | |
| GTCCTCCTTGTCCTTGCAGC+TGG | - | chr4.1:81605742-81605761 | MS.gene93374:intron | 60.0% | |
| TCCCAGCTGCAAGGACAAGG+AGG | + | chr4.1:81605747-81605766 | None:intergenic | 60.0% | |
| CCGTCCCAGCTGCAAGGACA+AGG | + | chr4.1:81605750-81605769 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 81605331 | 81608095 | 81605331 | ID=MS.gene93374 |
| chr4.1 | mRNA | 81605331 | 81608095 | 81605331 | ID=MS.gene93374.t1;Parent=MS.gene93374 |
| chr4.1 | exon | 81608009 | 81608095 | 81608009 | ID=MS.gene93374.t1.exon1;Parent=MS.gene93374.t1 |
| chr4.1 | CDS | 81608009 | 81608095 | 81608009 | ID=cds.MS.gene93374.t1;Parent=MS.gene93374.t1 |
| chr4.1 | exon | 81606943 | 81606997 | 81606943 | ID=MS.gene93374.t1.exon2;Parent=MS.gene93374.t1 |
| chr4.1 | CDS | 81606943 | 81606997 | 81606943 | ID=cds.MS.gene93374.t1;Parent=MS.gene93374.t1 |
| chr4.1 | exon | 81605331 | 81605701 | 81605331 | ID=MS.gene93374.t1.exon3;Parent=MS.gene93374.t1 |
| chr4.1 | CDS | 81605331 | 81605701 | 81605331 | ID=cds.MS.gene93374.t1;Parent=MS.gene93374.t1 |
| Gene Sequence |
| Protein sequence |
