AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53779


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53779.t1 MTR_7g029015 97.904 477 10 0 1 477 113 589 0.0 945
MS.gene53779.t1 MTR_3g099150 48.548 482 201 5 1 470 113 559 2.30e-147 433
MS.gene53779.t1 MTR_2g450710 34.968 469 282 7 7 474 116 562 3.09e-86 275
MS.gene53779.t1 MTR_4g116210 34.874 476 278 8 7 474 117 568 2.50e-84 271
MS.gene53779.t1 MTR_5g022380 34.034 476 255 7 1 473 1 420 2.23e-78 251
MS.gene53779.t1 MTR_2g100400 33.191 467 247 10 1 464 124 528 1.76e-77 252
MS.gene53779.t1 MTR_5g022380 33.824 476 256 7 1 473 111 530 6.33e-77 250
MS.gene53779.t1 MTR_1g111510 34.255 470 266 9 1 464 124 556 2.62e-76 250
MS.gene53779.t1 MTR_1g111530 32.842 475 266 8 1 464 120 552 5.26e-75 246
MS.gene53779.t1 MTR_4g073690 32.008 478 262 5 1 468 113 537 9.10e-75 245
MS.gene53779.t1 MTR_7g102880 33.263 475 273 7 1 464 127 568 2.47e-74 246
MS.gene53779.t1 MTR_5g090570 32.917 480 257 10 1 477 115 532 2.94e-74 243
MS.gene53779.t1 MTR_1g111540 33.547 468 272 8 1 464 124 556 3.67e-74 244
MS.gene53779.t1 MTR_1g111550 34.244 476 257 13 1 464 123 554 3.07e-73 242
MS.gene53779.t1 MTR_1g050550 32.716 486 274 10 1 470 122 570 9.91e-72 238
MS.gene53779.t1 MTR_1g059080 33.333 483 266 11 1 470 122 561 7.03e-68 228
MS.gene53779.t1 MTR_2g104250 32.320 362 172 8 119 474 4 298 4.86e-51 176
MS.gene53779.t1 MTR_4g073690 29.653 317 178 4 1 307 113 394 3.13e-37 141
MS.gene53779.t1 MTR_7g083660 22.547 479 319 14 14 475 117 560 1.70e-20 94.7
MS.gene53779.t1 MTR_5g026350 23.758 463 320 12 14 464 117 558 2.87e-19 91.3
MS.gene53779.t1 MTR_3g466040 23.028 469 295 11 3 466 107 514 1.67e-17 85.5
MS.gene53779.t1 MTR_8g071920 26.616 263 158 7 215 464 359 599 2.84e-14 75.5
MS.gene53779.t1 MTR_3g466110 27.586 174 123 1 234 407 304 474 3.45e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53779.t1 AT5G14120 69.263 475 131 4 1 471 114 577 0.0 648
MS.gene53779.t1 AT3G01930 67.708 480 135 4 1 471 114 582 0.0 647
MS.gene53779.t1 AT3G01930 67.708 480 135 4 1 471 1 469 0.0 647
MS.gene53779.t1 AT3G01930 69.255 322 90 3 1 313 114 435 3.38e-149 433
MS.gene53779.t1 AT5G50520 44.609 473 208 6 3 472 117 538 3.91e-136 403
MS.gene53779.t1 AT5G50630 44.609 473 208 6 3 472 117 538 3.91e-136 403
MS.gene53779.t1 AT2G39210 34.375 480 269 8 1 470 119 562 6.90e-84 270
MS.gene53779.t1 AT4G34950 32.645 484 281 7 1 475 114 561 1.54e-82 266
MS.gene53779.t1 AT1G80530 34.395 471 272 6 7 474 117 553 1.33e-81 263
MS.gene53779.t1 AT2G16660 33.333 471 262 7 1 468 112 533 1.69e-78 254
MS.gene53779.t1 AT2G28120 33.472 481 267 12 1 470 115 553 1.06e-75 248
MS.gene53779.t1 AT1G74780 32.906 468 244 8 1 464 121 522 9.48e-74 242
MS.gene53779.t1 AT2G34350 30.882 476 260 9 1 474 117 525 3.93e-67 224
MS.gene53779.t1 AT2G34350 30.882 476 260 9 1 474 117 525 3.93e-67 224
MS.gene53779.t1 AT1G18940 29.449 472 260 6 1 470 121 521 2.83e-66 222
MS.gene53779.t1 AT2G34355 30.417 480 259 10 1 474 113 523 3.62e-64 216
MS.gene53779.t1 AT2G34355 30.159 441 233 10 40 474 2 373 1.79e-54 187
MS.gene53779.t1 AT2G16660 32.903 310 174 6 1 307 112 390 2.14e-43 157
MS.gene53779.t1 AT2G30300 23.913 460 280 10 14 465 100 497 5.48e-21 96.3
MS.gene53779.t1 AT3G01630 24.625 467 286 14 14 467 151 564 3.31e-19 90.9
MS.gene53779.t1 AT3G01630 24.625 467 286 14 14 467 133 546 3.65e-19 90.9
MS.gene53779.t1 AT4G19450 25.000 436 295 13 14 438 117 531 6.14e-19 90.1
MS.gene53779.t1 AT1G31470 21.748 469 296 14 14 467 153 565 2.17e-16 82.4
MS.gene53779.t1 AT5G45275 27.984 243 154 6 224 464 332 555 1.37e-14 76.6

Find 112 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATTGTCCTTCTGTTTC+TGG 0.103789 7.2:+70439176 None:intergenic
AAATCTTTCACGTTGGTTTA+TGG 0.174292 7.2:-70439386 MS.gene53779:CDS
GCTACAGCCTCTGAATTATT+TGG 0.203666 7.2:-70438028 MS.gene53779:CDS
TCGTCTCCATGATCAGTATT+TGG 0.218122 7.2:-70438830 MS.gene53779:CDS
ATGGTCTTAGGTTCTGGATC+TGG 0.228794 7.2:-70438918 MS.gene53779:CDS
ATCAGTATTTGGAACTTTCT+TGG 0.238824 7.2:-70438819 MS.gene53779:CDS
CTACTTCAACACAGTTTCTT+TGG 0.254430 7.2:-70439639 MS.gene53779:CDS
ATGATGCTATATTCAGGTTT+TGG 0.278330 7.2:+70437879 None:intergenic
CGGTCAGATGAGCCAGTCTT+TGG 0.285592 7.2:-70438874 MS.gene53779:CDS
CTTGTTGGCTGCTTATTTGA+TGG 0.308655 7.2:-70439354 MS.gene53779:CDS
ATTGTTTATGCTAGCTTGTA+TGG 0.317743 7.2:-70437719 MS.gene53779:CDS
TCATGCATCGTTAATATTCA+TGG 0.329075 7.2:-70439498 MS.gene53779:CDS
ATTTCCATGGTCTTAGGTTC+TGG 0.350122 7.2:-70438924 MS.gene53779:CDS
GACTTGGTTACGGTGCTCAT+TGG 0.360347 7.2:-70438063 MS.gene53779:CDS
GCAGCTAATGCAGCTGGTCT+TGG 0.373732 7.2:+70438169 None:intergenic
AATATTAACGATGCATGATC+AGG 0.374870 7.2:+70439503 None:intergenic
TTCAAAATTTCCCGAAAAGC+CGG 0.380401 7.2:-70439607 MS.gene53779:CDS
CTTATATTTGTGGGAACAAA+TGG 0.381637 7.2:-70439668 MS.gene53779:CDS
TGCTTATTTGATGGGAGTTA+TGG 0.383685 7.2:-70439345 MS.gene53779:CDS
ATACGAATGATGCTATATTC+AGG 0.390473 7.2:+70437873 None:intergenic
TGGTCTTAGGTTCTGGATCT+GGG 0.391749 7.2:-70438917 MS.gene53779:CDS
TTATGGTGTATGTCTCTTGT+TGG 0.401325 7.2:-70439369 MS.gene53779:CDS
TACGTTGGCACTTTACTAGT+TGG 0.411740 7.2:-70438085 MS.gene53779:CDS
TTCATTGGCATGGGATGGCC+AGG 0.416629 7.2:-70438115 MS.gene53779:CDS
TTACTAGTTGGACTTGGTTA+CGG 0.418091 7.2:-70438073 MS.gene53779:CDS
AAAGTTCCAAATACTGATCA+TGG 0.424968 7.2:+70438824 None:intergenic
TTATTTGGTTTAAGAAACTT+TGG 0.428476 7.2:-70438013 MS.gene53779:CDS
ATGTGTATTCTTATATTTGT+GGG 0.431347 7.2:-70439677 MS.gene53779:CDS
TCAAAATTTCCCGAAAAGCC+GGG 0.432516 7.2:-70439606 MS.gene53779:CDS
GAGAAGACAAGAGTTCCAAC+AGG 0.434937 7.2:+70437959 None:intergenic
GGGAGCAAGTCCACTTCCTT+AGG 0.435147 7.2:+70439107 None:intergenic
TTGTTGGCTGCTTATTTGAT+GGG 0.435499 7.2:-70439353 MS.gene53779:CDS
AATGACAAAGGAATTATAAT+CGG 0.440338 7.2:+70439245 None:intergenic
CATATGGAACCTTCGCACTT+TGG 0.443970 7.2:+70437824 None:intergenic
ATTCCTTTGTCATTAACCTT+CGG 0.444957 7.2:-70439236 MS.gene53779:CDS
TGAAGTAATATTAAGTGAGT+TGG 0.445671 7.2:-70439141 MS.gene53779:CDS
AAGGAGCTGTGAGGGTTAAG+AGG 0.447202 7.2:-70439022 MS.gene53779:CDS
GGATTATGCATTGTTGCGGC+AGG 0.460540 7.2:-70437773 MS.gene53779:CDS
ACTTGGTTACGGTGCTCATT+GGG 0.463235 7.2:-70438062 MS.gene53779:CDS
CTGCCATGATAGTGGATGTC+AGG 0.467856 7.2:+70437795 None:intergenic
AACTTTCTTGGACGTGTTGG+AGG 0.470215 7.2:-70438807 MS.gene53779:CDS
GGTCAGATGAGCCAGTCTTT+GGG 0.473244 7.2:-70438873 MS.gene53779:CDS
GCATAATCCTGCCATGATAG+TGG 0.474193 7.2:+70437787 None:intergenic
CAAAGAAACTGTGTTGAAGT+AGG 0.476111 7.2:+70439640 None:intergenic
CGTTTCTGCCTTTCCGACGC+AGG 0.478111 7.2:+70439086 None:intergenic
TAGCATAAACAATCCTTGTT+CGG 0.485537 7.2:+70437729 None:intergenic
TCTCTAGTCTCATTGCTAGT+AGG 0.486798 7.2:-70437940 MS.gene53779:CDS
AATAATTCAGAGGCTGTAGC+TGG 0.491533 7.2:+70438031 None:intergenic
GGTCCAGCATTGGTAGGAAT+AGG 0.493698 7.2:-70439467 MS.gene53779:CDS
ATGTTCATTGTTAGACCTGT+CGG 0.494988 7.2:-70439440 MS.gene53779:CDS
CTGCTGCAAGCTGCTGCAGA+AGG 0.495751 7.2:-70439041 MS.gene53779:CDS
TTAATATTCATGGTTGCTGT+TGG 0.497023 7.2:-70439488 MS.gene53779:CDS
AGACCTATTCCTACCAATGC+TGG 0.505924 7.2:+70439464 None:intergenic
GGATGTCAGGAAGAAGCATA+TGG 0.506273 7.2:+70437808 None:intergenic
CCCGAAAAGCCGGGGTCCCG+TGG 0.506898 7.2:-70439597 MS.gene53779:CDS
TTTCTTGGACGTGTTGGAGG+CGG 0.511820 7.2:-70438804 MS.gene53779:CDS
TGGAACTTTCTTGGACGTGT+TGG 0.513657 7.2:-70438810 MS.gene53779:CDS
ACTTGTTTGTGACCTCCGAC+AGG 0.514273 7.2:+70439425 None:intergenic
AAAAGCCGGGGTCCCGTGGT+TGG 0.515273 7.2:-70439593 MS.gene53779:CDS
AGATGAGAAGCCTAAGGAAG+TGG 0.515527 7.2:-70439117 MS.gene53779:CDS
TGTTTCTCGTGTTCCGAACA+AGG 0.516891 7.2:-70437742 MS.gene53779:CDS
CCCTTTAAAATTCCAACCAC+GGG 0.526339 7.2:+70439581 None:intergenic
CTTCCTGACATCCACTATCA+TGG 0.528499 7.2:-70437798 MS.gene53779:CDS
ATCACTCTAGCAAACCCTGT+TGG 0.532002 7.2:-70437974 MS.gene53779:CDS
GGTTGCTGTTGGTCCAGCAT+TGG 0.533114 7.2:-70439477 MS.gene53779:CDS
AAACAAGTGCGGCCGTCGGA+TGG 0.533967 7.2:-70439410 MS.gene53779:CDS
GTATCTAGTGCGCTTAATGT+TGG 0.537346 7.2:-70437854 MS.gene53779:CDS
GCTGTTGGTCCAGCATTGGT+AGG 0.539156 7.2:-70439473 MS.gene53779:CDS
GGCACTTTACTAGTTGGACT+TGG 0.541785 7.2:-70438079 MS.gene53779:CDS
ACGATGCATGATCAGGGGAA+TGG 0.543155 7.2:+70439510 None:intergenic
CATTGTCATATCCCAAAGAC+TGG 0.548663 7.2:+70438862 None:intergenic
TGAAATGCAGCTAATGCAGC+TGG 0.548805 7.2:+70438163 None:intergenic
AGAAGTGCTTCTTCCTCTAG+AGG 0.550119 7.2:+70439200 None:intergenic
GTTTCTGCCTTTCCGACGCA+GGG 0.551610 7.2:+70439087 None:intergenic
ACTTGCTCCCTGCGTCGGAA+AGG 0.554542 7.2:-70439094 MS.gene53779:CDS
TGCTGCAGAAGGAGCTGTGA+GGG 0.559996 7.2:-70439030 MS.gene53779:CDS
AAGGGCTTTGCTGGATTGAG+TGG 0.565910 7.2:-70439563 MS.gene53779:CDS
CTGACATCCACTATCATGGC+AGG 0.565999 7.2:-70437794 MS.gene53779:CDS
GAGCTGTGAGGGTTAAGAGG+AGG 0.567528 7.2:-70439019 MS.gene53779:CDS
CAAAATTTCCCGAAAAGCCG+GGG 0.569217 7.2:-70439605 MS.gene53779:CDS
AAATTCCAACCACGGGACCC+CGG 0.570142 7.2:+70439588 None:intergenic
AGTGGACTTGCTCCCTGCGT+CGG 0.572578 7.2:-70439099 MS.gene53779:CDS
GGCAGGATTATGCATTGTTG+CGG 0.574036 7.2:-70437777 MS.gene53779:CDS
TTTCAACTAGCTATGACTGT+TGG 0.574245 7.2:-70438145 MS.gene53779:CDS
GTTGGAAGATGAGAAGCCTA+AGG 0.577142 7.2:-70439123 MS.gene53779:CDS
GTCATTAACCTTCGGCCCTG+CGG 0.579108 7.2:-70439228 MS.gene53779:CDS
ATATTAACGATGCATGATCA+GGG 0.581843 7.2:+70439504 None:intergenic
GTGAGGGTTAAGAGGAGGAG+AGG 0.584228 7.2:-70439014 MS.gene53779:CDS
TCTTAAACCAAATAATTCAG+AGG 0.585066 7.2:+70438021 None:intergenic
GCCCTTTAAAATTCCAACCA+CGG 0.585494 7.2:+70439580 None:intergenic
GTAAAATCTTCTCCTCTATG+TGG 0.590594 7.2:+70438990 None:intergenic
AGATCCAGAACCTAAGACCA+TGG 0.600742 7.2:+70438920 None:intergenic
GTGCCAACGTACATTGAACC+TGG 0.605966 7.2:+70438097 None:intergenic
AGGAGGAGAGGACCACATAG+AGG 0.606447 7.2:-70439002 MS.gene53779:CDS
TTGACTGTAATTGACAATCT+CGG 0.606676 7.2:-70438894 MS.gene53779:CDS
GGTGACGCGCCAAAGTGCGA+AGG 0.621883 7.2:-70437833 MS.gene53779:CDS
GATGTGTATTCTTATATTTG+TGG 0.622481 7.2:-70439678 MS.gene53779:CDS
GATTATGCATTGTTGCGGCA+GGG 0.630180 7.2:-70437772 MS.gene53779:CDS
GGGCCGAAGGTTAATGACAA+AGG 0.631796 7.2:+70439233 None:intergenic
TTTAATCAAAGCTTGCGTCA+AGG 0.639178 7.2:+70438968 None:intergenic
GAAGCAGAGAAACAAGCTCA+TGG 0.639621 7.2:-70437905 MS.gene53779:CDS
TCACAAACAAGTGCGGCCGT+CGG 0.640280 7.2:-70439414 MS.gene53779:CDS
GCACTTCTTCCAGAAACAGA+AGG 0.653183 7.2:-70439185 MS.gene53779:CDS
TTCATTGTTAGACCTGTCGG+AGG 0.667965 7.2:-70439437 MS.gene53779:CDS
AGAAGACAAGAGTTCCAACA+GGG 0.668994 7.2:+70437960 None:intergenic
TATTAACGATGCATGATCAG+GGG 0.675991 7.2:+70439505 None:intergenic
GGATGGAAAATCTTTCACGT+TGG 0.680385 7.2:-70439393 MS.gene53779:CDS
GAATTATAATCGGAGCAATG+AGG 0.685023 7.2:+70439255 None:intergenic
CTGCTGCAGAAGGAGCTGTG+AGG 0.702176 7.2:-70439031 MS.gene53779:CDS
TCGGAGGTCACAAACAAGTG+CGG 0.705441 7.2:-70439421 MS.gene53779:CDS
TGGCCAGGTTCAATGTACGT+TGG 0.706240 7.2:-70438100 MS.gene53779:CDS
GCAGAGAAACAAGCTCATGG+TGG 0.726436 7.2:-70437902 MS.gene53779:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCAAACTTTTTTTATAT+AGG + chr7.2:70439024-70439043 None:intergenic 10.0%
!! AAGCTATAAATATTTAATCA+GGG + chr7.2:70438635-70438654 None:intergenic 15.0%
!!! TTAAATATTTATAGCTTGTT+TGG - chr7.2:70438638-70438657 MS.gene53779:intron 15.0%
!! AATGACAAAGGAATTATAAT+CGG + chr7.2:70438126-70438145 None:intergenic 20.0%
!! ATGTGTATTCTTATATTTGT+GGG - chr7.2:70437691-70437710 MS.gene53779:CDS 20.0%
!! CAAGCTATAAATATTTAATC+AGG + chr7.2:70438636-70438655 None:intergenic 20.0%
!!! TTATTTGGTTTAAGAAACTT+TGG - chr7.2:70439355-70439374 MS.gene53779:CDS 20.0%
!!! TTATTTTCACTTTCTTTTCT+TGG + chr7.2:70438800-70438819 None:intergenic 20.0%
! AATTAAGCTGTTTATCCAAA+AGG - chr7.2:70439102-70439121 MS.gene53779:CDS 25.0%
! TCTTAAACCAAATAATTCAG+AGG + chr7.2:70439350-70439369 None:intergenic 25.0%
! TCTTGTCAAAATTTCTAACA+TGG - chr7.2:70439131-70439150 MS.gene53779:CDS 25.0%
! TGAAGTAATATTAAGTGAGT+TGG - chr7.2:70438227-70438246 MS.gene53779:intron 25.0%
!! CAATACAAAGAAAGTTTTCA+TGG + chr7.2:70438747-70438766 None:intergenic 25.0%
!! CTTTGATTAAAGCAGATTTT+TGG - chr7.2:70438412-70438431 MS.gene53779:intron 25.0%
AAAGTTCCAAATACTGATCA+TGG + chr7.2:70438547-70438566 None:intergenic 30.0%
AATATTAACGATGCATGATC+AGG + chr7.2:70437868-70437887 None:intergenic 30.0%
ATACGAATGATGCTATATTC+AGG + chr7.2:70439498-70439517 None:intergenic 30.0%
ATATTAACGATGCATGATCA+GGG + chr7.2:70437867-70437886 None:intergenic 30.0%
ATTCCTTTGTCATTAACCTT+CGG - chr7.2:70438132-70438151 MS.gene53779:CDS 30.0%
CTTATATTTGTGGGAACAAA+TGG - chr7.2:70437700-70437719 MS.gene53779:CDS 30.0%
TAGCATAAACAATCCTTGTT+CGG + chr7.2:70439642-70439661 None:intergenic 30.0%
TCATGCATCGTTAATATTCA+TGG - chr7.2:70437870-70437889 MS.gene53779:CDS 30.0%
TGGTTTCCTATATAGAACTT+CGG + chr7.2:70438727-70438746 None:intergenic 30.0%
TTAATATTCATGGTTGCTGT+TGG - chr7.2:70437880-70437899 MS.gene53779:CDS 30.0%
TTGACTGTAATTGACAATCT+CGG - chr7.2:70438474-70438493 MS.gene53779:intron 30.0%
! ATCAGTATTTGGAACTTTCT+TGG - chr7.2:70438549-70438568 MS.gene53779:intron 30.0%
! ATTGTTTATGCTAGCTTGTA+TGG - chr7.2:70439649-70439668 MS.gene53779:CDS 30.0%
!! AAATCTTTCACGTTGGTTTA+TGG - chr7.2:70437982-70438001 MS.gene53779:CDS 30.0%
!! ATGATGCTATATTCAGGTTT+TGG + chr7.2:70439492-70439511 None:intergenic 30.0%
!! CTTGGTTCAAAGTTTTGTAT+AGG + chr7.2:70438782-70438801 None:intergenic 30.0%
AAACACTTGTGAGGTTGTTT+GGG - chr7.2:70438906-70438925 MS.gene53779:CDS 35.0%
ATGTTCATTGTTAGACCTGT+CGG - chr7.2:70437928-70437947 MS.gene53779:CDS 35.0%
CAAAGAAACTGTGTTGAAGT+AGG + chr7.2:70437731-70437750 None:intergenic 35.0%
CTACTTCAACACAGTTTCTT+TGG - chr7.2:70437729-70437748 MS.gene53779:CDS 35.0%
CTATATAGAACTTCGGAAAC+AGG + chr7.2:70438720-70438739 None:intergenic 35.0%
CTGTTTCCGAAGTTCTATAT+AGG - chr7.2:70438718-70438737 MS.gene53779:intron 35.0%
GAATTATAATCGGAGCAATG+AGG + chr7.2:70438116-70438135 None:intergenic 35.0%
GTAAAATCTTCTCCTCTATG+TGG + chr7.2:70438381-70438400 None:intergenic 35.0%
TAAACACTTGTGAGGTTGTT+TGG - chr7.2:70438905-70438924 MS.gene53779:CDS 35.0%
TATTAACGATGCATGATCAG+GGG + chr7.2:70437866-70437885 None:intergenic 35.0%
TGCTTATTTGATGGGAGTTA+TGG - chr7.2:70438023-70438042 MS.gene53779:CDS 35.0%
TTATGGTGTATGTCTCTTGT+TGG - chr7.2:70437999-70438018 MS.gene53779:CDS 35.0%
TTCAAAATTTCCCGAAAAGC+CGG - chr7.2:70437761-70437780 MS.gene53779:CDS 35.0%
TTTAATCAAAGCTTGCGTCA+AGG + chr7.2:70438403-70438422 None:intergenic 35.0%
TTTCAACTAGCTATGACTGT+TGG - chr7.2:70439223-70439242 MS.gene53779:CDS 35.0%
! ACTGTTGGTCATCTTTTCAT+TGG - chr7.2:70439238-70439257 MS.gene53779:CDS 35.0%
! CTTTTCATTTCCATGGTCTT+AGG - chr7.2:70438438-70438457 MS.gene53779:intron 35.0%
! TTACTAGTTGGACTTGGTTA+CGG - chr7.2:70439295-70439314 MS.gene53779:CDS 35.0%
! TTGACAAGATTATCGCCTTT+TGG + chr7.2:70439120-70439139 None:intergenic 35.0%
! TTGGCTTCTTTTCATTTCCA+TGG - chr7.2:70438431-70438450 MS.gene53779:intron 35.0%
! TTGTTGGCTGCTTATTTGAT+GGG - chr7.2:70438015-70438034 MS.gene53779:CDS 35.0%
AATAATTCAGAGGCTGTAGC+TGG + chr7.2:70439340-70439359 None:intergenic 40.0%
AGAAAATCGATTGAGCCCTT+AGG - chr7.2:70438854-70438873 MS.gene53779:CDS 40.0%
AGAAGACAAGAGTTCCAACA+GGG + chr7.2:70439411-70439430 None:intergenic 40.0%
AGCTCAAATAAGCCAACCTA+AGG + chr7.2:70438873-70438892 None:intergenic 40.0%
CATTGTCATATCCCAAAGAC+TGG + chr7.2:70438509-70438528 None:intergenic 40.0%
CTTATTTCCTTGAGCTCTCT+AGG - chr7.2:70438974-70438993 MS.gene53779:CDS 40.0%
GAGCAATGAGGATCAAAAAG+AGG + chr7.2:70438104-70438123 None:intergenic 40.0%
GCTACAGCCTCTGAATTATT+TGG - chr7.2:70439340-70439359 MS.gene53779:CDS 40.0%
GCTCAAATAAGCCAACCTAA+GGG + chr7.2:70438872-70438891 None:intergenic 40.0%
GGATGGAAAATCTTTCACGT+TGG - chr7.2:70437975-70437994 MS.gene53779:CDS 40.0%
GTATCTAGTGCGCTTAATGT+TGG - chr7.2:70439514-70439533 MS.gene53779:CDS 40.0%
TACGAGCATAAACACTTGTG+AGG - chr7.2:70438897-70438916 MS.gene53779:CDS 40.0%
TACGTTGGCACTTTACTAGT+TGG - chr7.2:70439283-70439302 MS.gene53779:CDS 40.0%
TCAAAATTTCCCGAAAAGCC+GGG - chr7.2:70437762-70437781 MS.gene53779:CDS 40.0%
TCGTCTCCATGATCAGTATT+TGG - chr7.2:70438538-70438557 MS.gene53779:intron 40.0%
TCTCTAGTCTCATTGCTAGT+AGG - chr7.2:70439428-70439447 MS.gene53779:CDS 40.0%
TGAGATTGTCCTTCTGTTTC+TGG + chr7.2:70438195-70438214 None:intergenic 40.0%
! ATCTTTTCATTGGCATGGGA+TGG - chr7.2:70439248-70439267 MS.gene53779:CDS 40.0%
! ATTTCCATGGTCTTAGGTTC+TGG - chr7.2:70438444-70438463 MS.gene53779:intron 40.0%
! CCCGTGGTTGGAATTTTAAA+GGG - chr7.2:70437787-70437806 MS.gene53779:CDS 40.0%
! CTTGTTGGCTGCTTATTTGA+TGG - chr7.2:70438014-70438033 MS.gene53779:CDS 40.0%
! GGTCATCTTTTCATTGGCAT+GGG - chr7.2:70439244-70439263 MS.gene53779:CDS 40.0%
! GTGAAAGATTTTCCATCCGA+CGG + chr7.2:70437973-70437992 None:intergenic 40.0%
! TCCCGTGGTTGGAATTTTAA+AGG - chr7.2:70437786-70437805 MS.gene53779:CDS 40.0%
! TGGTCATCTTTTCATTGGCA+TGG - chr7.2:70439243-70439262 MS.gene53779:CDS 40.0%
!! CCCTTTAAAATTCCAACCAC+GGG + chr7.2:70437790-70437809 None:intergenic 40.0%
!! GCCCTTTAAAATTCCAACCA+CGG + chr7.2:70437791-70437810 None:intergenic 40.0%
!! GGAATTTTAAAGGGCTTTGC+TGG - chr7.2:70437796-70437815 MS.gene53779:CDS 40.0%
AACTTTCTTGGACGTGTTGG+AGG - chr7.2:70438561-70438580 MS.gene53779:intron 45.0%
AATCGATTGAGCCCTTAGGT+TGG - chr7.2:70438858-70438877 MS.gene53779:CDS 45.0%
ACTTGGTTACGGTGCTCATT+GGG - chr7.2:70439306-70439325 MS.gene53779:CDS 45.0%
AGACCTATTCCTACCAATGC+TGG + chr7.2:70437907-70437926 None:intergenic 45.0%
AGATCCAGAACCTAAGACCA+TGG + chr7.2:70438451-70438470 None:intergenic 45.0%
AGATGAGAAGCCTAAGGAAG+TGG - chr7.2:70438251-70438270 MS.gene53779:intron 45.0%
ATCACTCTAGCAAACCCTGT+TGG - chr7.2:70439394-70439413 MS.gene53779:CDS 45.0%
ATTTCCTTGAGCTCTCTAGG+AGG - chr7.2:70438977-70438996 MS.gene53779:CDS 45.0%
CAAAATTTCCCGAAAAGCCG+GGG - chr7.2:70437763-70437782 MS.gene53779:CDS 45.0%
CATATGGAACCTTCGCACTT+TGG + chr7.2:70439547-70439566 None:intergenic 45.0%
CCCTGCTCAGTAAAACACAT+CGG + chr7.2:70439168-70439187 None:intergenic 45.0%
CTTCCTGACATCCACTATCA+TGG - chr7.2:70439570-70439589 MS.gene53779:CDS 45.0%
GAAGCAGAGAAACAAGCTCA+TGG - chr7.2:70439463-70439482 MS.gene53779:CDS 45.0%
GAGAAGACAAGAGTTCCAAC+AGG + chr7.2:70439412-70439431 None:intergenic 45.0%
GATTATGCATTGTTGCGGCA+GGG - chr7.2:70439596-70439615 MS.gene53779:CDS 45.0%
GCACTTCTTCCAGAAACAGA+AGG - chr7.2:70438183-70438202 MS.gene53779:CDS 45.0%
GCATAATCCTGCCATGATAG+TGG + chr7.2:70439584-70439603 None:intergenic 45.0%
GGCACTTTACTAGTTGGACT+TGG - chr7.2:70439289-70439308 MS.gene53779:CDS 45.0%
GGCAGGATTATGCATTGTTG+CGG - chr7.2:70439591-70439610 MS.gene53779:CDS 45.0%
GTTGGAAGATGAGAAGCCTA+AGG - chr7.2:70438245-70438264 MS.gene53779:intron 45.0%
TGAAATGCAGCTAATGCAGC+TGG + chr7.2:70439208-70439227 None:intergenic 45.0%
TGGAACTTTCTTGGACGTGT+TGG - chr7.2:70438558-70438577 MS.gene53779:intron 45.0%
TGTTTCTCGTGTTCCGAACA+AGG - chr7.2:70439626-70439645 MS.gene53779:CDS 45.0%
TTCATTGTTAGACCTGTCGG+AGG - chr7.2:70437931-70437950 MS.gene53779:CDS 45.0%
! CCGATGTGTTTTACTGAGCA+GGG - chr7.2:70439165-70439184 MS.gene53779:CDS 45.0%
! GGATGTCAGGAAGAAGCATA+TGG + chr7.2:70439563-70439582 None:intergenic 45.0%
! TCCGATGTGTTTTACTGAGC+AGG - chr7.2:70439164-70439183 MS.gene53779:CDS 45.0%
! TTTCCTTGAGCTCTCTAGGA+GGG - chr7.2:70438978-70438997 MS.gene53779:CDS 45.0%
!! AGAAGTGCTTCTTCCTCTAG+AGG + chr7.2:70438171-70438190 None:intergenic 45.0%
!! ATGGTCTTAGGTTCTGGATC+TGG - chr7.2:70438450-70438469 MS.gene53779:intron 45.0%
!! TGGTCTTAGGTTCTGGATCT+GGG - chr7.2:70438451-70438470 MS.gene53779:intron 45.0%
AAGGAGCTGTGAGGGTTAAG+AGG - chr7.2:70438346-70438365 MS.gene53779:intron 50.0%
AAGGGCTTTGCTGGATTGAG+TGG - chr7.2:70437805-70437824 MS.gene53779:CDS 50.0%
ACGATGCATGATCAGGGGAA+TGG + chr7.2:70437861-70437880 None:intergenic 50.0%
ACTTGTTTGTGACCTCCGAC+AGG + chr7.2:70437946-70437965 None:intergenic 50.0%
CTGACATCCACTATCATGGC+AGG - chr7.2:70439574-70439593 MS.gene53779:CDS 50.0%
GCAGAGAAACAAGCTCATGG+TGG - chr7.2:70439466-70439485 MS.gene53779:CDS 50.0%
GGATTATGCATTGTTGCGGC+AGG - chr7.2:70439595-70439614 MS.gene53779:CDS 50.0%
GGGCCGAAGGTTAATGACAA+AGG + chr7.2:70438138-70438157 None:intergenic 50.0%
GGTCAGATGAGCCAGTCTTT+GGG - chr7.2:70438495-70438514 MS.gene53779:intron 50.0%
GTGCCAACGTACATTGAACC+TGG + chr7.2:70439274-70439293 None:intergenic 50.0%
TCGGAGGTCACAAACAAGTG+CGG - chr7.2:70437947-70437966 MS.gene53779:CDS 50.0%
TGGCCAGGTTCAATGTACGT+TGG - chr7.2:70439268-70439287 MS.gene53779:CDS 50.0%
TTTCTTGGACGTGTTGGAGG+CGG - chr7.2:70438564-70438583 MS.gene53779:intron 50.0%
! GACTTGGTTACGGTGCTCAT+TGG - chr7.2:70439305-70439324 MS.gene53779:CDS 50.0%
!! CCTCTAGAGGTTTTTCCGCA+GGG + chr7.2:70438158-70438177 None:intergenic 50.0%
!! CTGCCATGATAGTGGATGTC+AGG + chr7.2:70439576-70439595 None:intergenic 50.0%
!! GGTCCAGCATTGGTAGGAAT+AGG - chr7.2:70437901-70437920 MS.gene53779:CDS 50.0%
!! TCCTCTAGAGGTTTTTCCGC+AGG + chr7.2:70438159-70438178 None:intergenic 50.0%
AAATTCCAACCACGGGACCC+CGG + chr7.2:70437783-70437802 None:intergenic 55.0%
AAGCCCTCCTAGAGAGCTCA+AGG + chr7.2:70438984-70439003 None:intergenic 55.0%
AGGAGGAGAGGACCACATAG+AGG - chr7.2:70438366-70438385 MS.gene53779:intron 55.0%
CCCTGCGGAAAAACCTCTAG+AGG - chr7.2:70438155-70438174 MS.gene53779:CDS 55.0%
CGGTCAGATGAGCCAGTCTT+TGG - chr7.2:70438494-70438513 MS.gene53779:intron 55.0%
GAGCTGTGAGGGTTAAGAGG+AGG - chr7.2:70438349-70438368 MS.gene53779:intron 55.0%
GGGAGCAAGTCCACTTCCTT+AGG + chr7.2:70438264-70438283 None:intergenic 55.0%
GTCATTAACCTTCGGCCCTG+CGG - chr7.2:70438140-70438159 MS.gene53779:CDS 55.0%
GTGAGGGTTAAGAGGAGGAG+AGG - chr7.2:70438354-70438373 MS.gene53779:intron 55.0%
GTTTCTGCCTTTCCGACGCA+GGG + chr7.2:70438284-70438303 None:intergenic 55.0%
TCACAAACAAGTGCGGCCGT+CGG - chr7.2:70437954-70437973 MS.gene53779:CDS 55.0%
TGCTGCAGAAGGAGCTGTGA+GGG - chr7.2:70438338-70438357 MS.gene53779:intron 55.0%
TTCATTGGCATGGGATGGCC+AGG - chr7.2:70439253-70439272 MS.gene53779:CDS 55.0%
! GCAGCTAATGCAGCTGGTCT+TGG + chr7.2:70439202-70439221 None:intergenic 55.0%
! GGTTGCTGTTGGTCCAGCAT+TGG - chr7.2:70437891-70437910 MS.gene53779:CDS 55.0%
!! GCTGTTGGTCCAGCATTGGT+AGG - chr7.2:70437895-70437914 MS.gene53779:CDS 55.0%
AAACAAGTGCGGCCGTCGGA+TGG - chr7.2:70437958-70437977 MS.gene53779:CDS 60.0%
ACTTGCTCCCTGCGTCGGAA+AGG - chr7.2:70438274-70438293 MS.gene53779:intron 60.0%
CGTTTCTGCCTTTCCGACGC+AGG + chr7.2:70438285-70438304 None:intergenic 60.0%
CTGCTGCAAGCTGCTGCAGA+AGG - chr7.2:70438327-70438346 MS.gene53779:intron 60.0%
CTGCTGCAGAAGGAGCTGTG+AGG - chr7.2:70438337-70438356 MS.gene53779:intron 60.0%
! AGGTTTTTCCGCAGGGCCGA+AGG + chr7.2:70438151-70438170 None:intergenic 60.0%
! AGTGGACTTGCTCCCTGCGT+CGG - chr7.2:70438269-70438288 MS.gene53779:intron 60.0%
AAAAGCCGGGGTCCCGTGGT+TGG - chr7.2:70437775-70437794 MS.gene53779:CDS 65.0%
GGTGACGCGCCAAAGTGCGA+AGG - chr7.2:70439535-70439554 MS.gene53779:CDS 65.0%
! ACCACGGGACCCCGGCTTTT+CGG + chr7.2:70437775-70437794 None:intergenic 65.0%
! CCACGGGACCCCGGCTTTTC+GGG + chr7.2:70437774-70437793 None:intergenic 70.0%
CCCGAAAAGCCGGGGTCCCG+TGG - chr7.2:70437771-70437790 MS.gene53779:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 70437691 70439699 70437691 ID=MS.gene53779
chr7.2 mRNA 70437691 70439699 70437691 ID=MS.gene53779.t1;Parent=MS.gene53779
chr7.2 exon 70438780 70439699 70438780 ID=MS.gene53779.t1.exon1;Parent=MS.gene53779.t1
chr7.2 CDS 70438780 70439699 70438780 ID=cds.MS.gene53779.t1;Parent=MS.gene53779.t1
chr7.2 exon 70437691 70438204 70437691 ID=MS.gene53779.t1.exon2;Parent=MS.gene53779.t1
chr7.2 CDS 70437691 70438204 70437691 ID=cds.MS.gene53779.t1;Parent=MS.gene53779.t1
Gene Sequence

>MS.gene53779

ATGTGTATTCTTATATTTGTGGGAACAAATGGTGAAACCTACTTCAACACAGTTTCTTTGGTTTCTTGTGTTCAAAATTTCCCGAAAAGCCGGGGTCCCGTGGTTGGAATTTTAAAGGGCTTTGCTGGATTGAGTGGTGCAATATTGACTCAAATATATGCAGTTATCCATTCCCCTGATCATGCATCGTTAATATTCATGGTTGCTGTTGGTCCAGCATTGGTAGGAATAGGTCTTATGTTCATTGTTAGACCTGTCGGAGGTCACAAACAAGTGCGGCCGTCGGATGGAAAATCTTTCACGTTGGTTTATGGTGTATGTCTCTTGTTGGCTGCTTATTTGATGGGAGTTATGGTTGTTCAAGATTTAGTTGATCTGAGTGAAACTGTTATCACAATTTTTACAATCATCCTCTTTTTGATCCTCATTGCTCCGATTATAATTCCTTTGTCATTAACCTTCGGCCCTGCGGAAAAACCTCTAGAGGAAGAAGCACTTCTTCCAGAAACAGAAGGACAATCTCAAAATTATTCAGATGAAGTAATATTAAGTGAGTTGGAAGATGAGAAGCCTAAGGAAGTGGACTTGCTCCCTGCGTCGGAAAGGCAGAAACGTATAGCACAATTACAATCAAGACTGCTGCAAGCTGCTGCAGAAGGAGCTGTGAGGGTTAAGAGGAGGAGAGGACCACATAGAGGAGAAGATTTTACCTTGACGCAAGCTTTGATTAAAGCAGATTTTTGGCTTCTTTTCATTTCCATGGTCTTAGGTTCTGGATCTGGGTTGACTGTAATTGACAATCTCGGTCAGATGAGCCAGTCTTTGGGATATGACAATGCACATATTTTCGTCTCCATGATCAGTATTTGGAACTTTCTTGGACGTGTTGGAGGCGGCTACATATCTGAGATTGTTGTCAAGTAAAAATCATTTCATTTACACCCTGATTAAATATTTATAGCTTGTTTGGTTTCAGATAATGTTTTTTGTTTTTGTTATGCAAATGTTACTTGTTTTCACTTGTTTCCTGTTTCCGAAGTTCTATATAGGAAACCATGAAAACTTTCTTTGTATTGTTTTCAGTGTTACCTATACAAAACTTTGAACCAAGAAAAGAAAGTGAAAATAATGTGACATTTTTTTATTTAAAACAAAAAACAGAGAGAAAATCGATTGAGCCCTTAGGTTGGCTTATTTGAGCTTATTTACGAGCATAAACACTTGTGAGGTTGTTTGGGAGAGCTTATAGAAACAGCTGATCACATGTTTATAAGCTGTCTCAACTTATTTCCTTGAGCTCTCTAGGAGGGCTTGTGATAAGAGCTTATAACCTATATAAAAAAAGTTTGATTATATTTTATCTTTTTTTATAGAAATAGCTTATACATAAGAACTTATTTGATAAGCGCTTAATTAAGCTGTTTATCCAAAAGGCGATAATCTTGTCAAAATTTCTAACATGGTTTTTTTAATTCCGATGTGTTTTACTGAGCAGGGATCATACATATCCAAGACCAGCTGCATTAGCTGCATTTCAACTAGCTATGACTGTTGGTCATCTTTTCATTGGCATGGGATGGCCAGGTTCAATGTACGTTGGCACTTTACTAGTTGGACTTGGTTACGGTGCTCATTGGGCAGTTGTTCCAGCTACAGCCTCTGAATTATTTGGTTTAAGAAACTTTGGTGCATTATACAATTTCATCACTCTAGCAAACCCTGTTGGAACTCTTGTCTTCTCTAGTCTCATTGCTAGTAGGATCTATGATTATGAAGCAGAGAAACAAGCTCATGGTGGCCAAAACCTGAATATAGCATCATTCGTATCTAGTGCGCTTAATGTTGGTGACGCGCCAAAGTGCGAAGGTTCCATATGCTTCTTCCTGACATCCACTATCATGGCAGGATTATGCATTGTTGCGGCAGGGTTAAGCATGTTTCTCGTGTTCCGAACAAGGATTGTTTATGCTAGCTTGTATGGAAAATCTTCTATGCGAAGCCTTCGATGA

Protein sequence

>MS.gene53779.t1

MCILIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYAVIHSPDHASLIFMVAVGPALVGIGLMFIVRPVGGHKQVRPSDGKSFTLVYGVCLLLAAYLMGVMVVQDLVDLSETVITIFTIILFLILIAPIIIPLSLTFGPAEKPLEEEALLPETEGQSQNYSDEVILSELEDEKPKEVDLLPASERQKRIAQLQSRLLQAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLLFISMVLGSGSGLTVIDNLGQMSQSLGYDNAHIFVSMISIWNFLGRVGGGYISEIVVKDHTYPRPAALAAFQLAMTVGHLFIGMGWPGSMYVGTLLVGLGYGAHWAVVPATASELFGLRNFGALYNFITLANPVGTLVFSSLIASRIYDYEAEKQAHGGQNLNIASFVSSALNVGDAPKCEGSICFFLTSTIMAGLCIVAAGLSMFLVFRTRIVYASLYGKSSMRSLR