Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53779.t1 | XP_013447979.1 | 94.5 | 477 | 26 | 0 | 1 | 477 | 113 | 589 | 8.90E-245 | 855.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53779.t1 | F4I9E1 | 21.9 | 462 | 304 | 13 | 14 | 467 | 153 | 565 | 8.2e-13 | 76.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53779.t1 | A0A072TXV1 | 94.5 | 477 | 26 | 0 | 1 | 477 | 113 | 589 | 6.4e-245 | 855.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049180 | MS.gene53779 | 0.807243 | 5.56E-50 | -1.69E-46 |
MS.gene050521 | MS.gene53779 | 0.802444 | 5.59E-49 | -1.69E-46 |
MS.gene050817 | MS.gene53779 | 0.824731 | 6.88E-54 | -1.69E-46 |
MS.gene050818 | MS.gene53779 | 0.835466 | 1.65E-56 | -1.69E-46 |
MS.gene050894 | MS.gene53779 | 0.844748 | 6.24E-59 | -1.69E-46 |
MS.gene054585 | MS.gene53779 | 0.833598 | 4.86E-56 | -1.69E-46 |
MS.gene055251 | MS.gene53779 | 0.836301 | 1.01E-56 | -1.69E-46 |
MS.gene058015 | MS.gene53779 | 0.805258 | 1.46E-49 | -1.69E-46 |
MS.gene058550 | MS.gene53779 | 0.805066 | 1.60E-49 | -1.69E-46 |
MS.gene060076 | MS.gene53779 | 0.947055 | 1.41E-105 | -1.69E-46 |
MS.gene060077 | MS.gene53779 | 0.964498 | 2.11E-123 | -1.69E-46 |
MS.gene061044 | MS.gene53779 | 0.831058 | 2.07E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene071281 | MS.gene53779 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53779.t1 | MTR_7g029015 | 97.904 | 477 | 10 | 0 | 1 | 477 | 113 | 589 | 0.0 | 945 |
MS.gene53779.t1 | MTR_3g099150 | 48.548 | 482 | 201 | 5 | 1 | 470 | 113 | 559 | 2.30e-147 | 433 |
MS.gene53779.t1 | MTR_2g450710 | 34.968 | 469 | 282 | 7 | 7 | 474 | 116 | 562 | 3.09e-86 | 275 |
MS.gene53779.t1 | MTR_4g116210 | 34.874 | 476 | 278 | 8 | 7 | 474 | 117 | 568 | 2.50e-84 | 271 |
MS.gene53779.t1 | MTR_5g022380 | 34.034 | 476 | 255 | 7 | 1 | 473 | 1 | 420 | 2.23e-78 | 251 |
MS.gene53779.t1 | MTR_2g100400 | 33.191 | 467 | 247 | 10 | 1 | 464 | 124 | 528 | 1.76e-77 | 252 |
MS.gene53779.t1 | MTR_5g022380 | 33.824 | 476 | 256 | 7 | 1 | 473 | 111 | 530 | 6.33e-77 | 250 |
MS.gene53779.t1 | MTR_1g111510 | 34.255 | 470 | 266 | 9 | 1 | 464 | 124 | 556 | 2.62e-76 | 250 |
MS.gene53779.t1 | MTR_1g111530 | 32.842 | 475 | 266 | 8 | 1 | 464 | 120 | 552 | 5.26e-75 | 246 |
MS.gene53779.t1 | MTR_4g073690 | 32.008 | 478 | 262 | 5 | 1 | 468 | 113 | 537 | 9.10e-75 | 245 |
MS.gene53779.t1 | MTR_7g102880 | 33.263 | 475 | 273 | 7 | 1 | 464 | 127 | 568 | 2.47e-74 | 246 |
MS.gene53779.t1 | MTR_5g090570 | 32.917 | 480 | 257 | 10 | 1 | 477 | 115 | 532 | 2.94e-74 | 243 |
MS.gene53779.t1 | MTR_1g111540 | 33.547 | 468 | 272 | 8 | 1 | 464 | 124 | 556 | 3.67e-74 | 244 |
MS.gene53779.t1 | MTR_1g111550 | 34.244 | 476 | 257 | 13 | 1 | 464 | 123 | 554 | 3.07e-73 | 242 |
MS.gene53779.t1 | MTR_1g050550 | 32.716 | 486 | 274 | 10 | 1 | 470 | 122 | 570 | 9.91e-72 | 238 |
MS.gene53779.t1 | MTR_1g059080 | 33.333 | 483 | 266 | 11 | 1 | 470 | 122 | 561 | 7.03e-68 | 228 |
MS.gene53779.t1 | MTR_2g104250 | 32.320 | 362 | 172 | 8 | 119 | 474 | 4 | 298 | 4.86e-51 | 176 |
MS.gene53779.t1 | MTR_4g073690 | 29.653 | 317 | 178 | 4 | 1 | 307 | 113 | 394 | 3.13e-37 | 141 |
MS.gene53779.t1 | MTR_7g083660 | 22.547 | 479 | 319 | 14 | 14 | 475 | 117 | 560 | 1.70e-20 | 94.7 |
MS.gene53779.t1 | MTR_5g026350 | 23.758 | 463 | 320 | 12 | 14 | 464 | 117 | 558 | 2.87e-19 | 91.3 |
MS.gene53779.t1 | MTR_3g466040 | 23.028 | 469 | 295 | 11 | 3 | 466 | 107 | 514 | 1.67e-17 | 85.5 |
MS.gene53779.t1 | MTR_8g071920 | 26.616 | 263 | 158 | 7 | 215 | 464 | 359 | 599 | 2.84e-14 | 75.5 |
MS.gene53779.t1 | MTR_3g466110 | 27.586 | 174 | 123 | 1 | 234 | 407 | 304 | 474 | 3.45e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53779.t1 | AT5G14120 | 69.263 | 475 | 131 | 4 | 1 | 471 | 114 | 577 | 0.0 | 648 |
MS.gene53779.t1 | AT3G01930 | 67.708 | 480 | 135 | 4 | 1 | 471 | 114 | 582 | 0.0 | 647 |
MS.gene53779.t1 | AT3G01930 | 67.708 | 480 | 135 | 4 | 1 | 471 | 1 | 469 | 0.0 | 647 |
MS.gene53779.t1 | AT3G01930 | 69.255 | 322 | 90 | 3 | 1 | 313 | 114 | 435 | 3.38e-149 | 433 |
MS.gene53779.t1 | AT5G50520 | 44.609 | 473 | 208 | 6 | 3 | 472 | 117 | 538 | 3.91e-136 | 403 |
MS.gene53779.t1 | AT5G50630 | 44.609 | 473 | 208 | 6 | 3 | 472 | 117 | 538 | 3.91e-136 | 403 |
MS.gene53779.t1 | AT2G39210 | 34.375 | 480 | 269 | 8 | 1 | 470 | 119 | 562 | 6.90e-84 | 270 |
MS.gene53779.t1 | AT4G34950 | 32.645 | 484 | 281 | 7 | 1 | 475 | 114 | 561 | 1.54e-82 | 266 |
MS.gene53779.t1 | AT1G80530 | 34.395 | 471 | 272 | 6 | 7 | 474 | 117 | 553 | 1.33e-81 | 263 |
MS.gene53779.t1 | AT2G16660 | 33.333 | 471 | 262 | 7 | 1 | 468 | 112 | 533 | 1.69e-78 | 254 |
MS.gene53779.t1 | AT2G28120 | 33.472 | 481 | 267 | 12 | 1 | 470 | 115 | 553 | 1.06e-75 | 248 |
MS.gene53779.t1 | AT1G74780 | 32.906 | 468 | 244 | 8 | 1 | 464 | 121 | 522 | 9.48e-74 | 242 |
MS.gene53779.t1 | AT2G34350 | 30.882 | 476 | 260 | 9 | 1 | 474 | 117 | 525 | 3.93e-67 | 224 |
MS.gene53779.t1 | AT2G34350 | 30.882 | 476 | 260 | 9 | 1 | 474 | 117 | 525 | 3.93e-67 | 224 |
MS.gene53779.t1 | AT1G18940 | 29.449 | 472 | 260 | 6 | 1 | 470 | 121 | 521 | 2.83e-66 | 222 |
MS.gene53779.t1 | AT2G34355 | 30.417 | 480 | 259 | 10 | 1 | 474 | 113 | 523 | 3.62e-64 | 216 |
MS.gene53779.t1 | AT2G34355 | 30.159 | 441 | 233 | 10 | 40 | 474 | 2 | 373 | 1.79e-54 | 187 |
MS.gene53779.t1 | AT2G16660 | 32.903 | 310 | 174 | 6 | 1 | 307 | 112 | 390 | 2.14e-43 | 157 |
MS.gene53779.t1 | AT2G30300 | 23.913 | 460 | 280 | 10 | 14 | 465 | 100 | 497 | 5.48e-21 | 96.3 |
MS.gene53779.t1 | AT3G01630 | 24.625 | 467 | 286 | 14 | 14 | 467 | 151 | 564 | 3.31e-19 | 90.9 |
MS.gene53779.t1 | AT3G01630 | 24.625 | 467 | 286 | 14 | 14 | 467 | 133 | 546 | 3.65e-19 | 90.9 |
MS.gene53779.t1 | AT4G19450 | 25.000 | 436 | 295 | 13 | 14 | 438 | 117 | 531 | 6.14e-19 | 90.1 |
MS.gene53779.t1 | AT1G31470 | 21.748 | 469 | 296 | 14 | 14 | 467 | 153 | 565 | 2.17e-16 | 82.4 |
MS.gene53779.t1 | AT5G45275 | 27.984 | 243 | 154 | 6 | 224 | 464 | 332 | 555 | 1.37e-14 | 76.6 |
Find 112 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAGATTGTCCTTCTGTTTC+TGG | 0.103789 | 7.2:+70439176 | None:intergenic |
AAATCTTTCACGTTGGTTTA+TGG | 0.174292 | 7.2:-70439386 | MS.gene53779:CDS |
GCTACAGCCTCTGAATTATT+TGG | 0.203666 | 7.2:-70438028 | MS.gene53779:CDS |
TCGTCTCCATGATCAGTATT+TGG | 0.218122 | 7.2:-70438830 | MS.gene53779:CDS |
ATGGTCTTAGGTTCTGGATC+TGG | 0.228794 | 7.2:-70438918 | MS.gene53779:CDS |
ATCAGTATTTGGAACTTTCT+TGG | 0.238824 | 7.2:-70438819 | MS.gene53779:CDS |
CTACTTCAACACAGTTTCTT+TGG | 0.254430 | 7.2:-70439639 | MS.gene53779:CDS |
ATGATGCTATATTCAGGTTT+TGG | 0.278330 | 7.2:+70437879 | None:intergenic |
CGGTCAGATGAGCCAGTCTT+TGG | 0.285592 | 7.2:-70438874 | MS.gene53779:CDS |
CTTGTTGGCTGCTTATTTGA+TGG | 0.308655 | 7.2:-70439354 | MS.gene53779:CDS |
ATTGTTTATGCTAGCTTGTA+TGG | 0.317743 | 7.2:-70437719 | MS.gene53779:CDS |
TCATGCATCGTTAATATTCA+TGG | 0.329075 | 7.2:-70439498 | MS.gene53779:CDS |
ATTTCCATGGTCTTAGGTTC+TGG | 0.350122 | 7.2:-70438924 | MS.gene53779:CDS |
GACTTGGTTACGGTGCTCAT+TGG | 0.360347 | 7.2:-70438063 | MS.gene53779:CDS |
GCAGCTAATGCAGCTGGTCT+TGG | 0.373732 | 7.2:+70438169 | None:intergenic |
AATATTAACGATGCATGATC+AGG | 0.374870 | 7.2:+70439503 | None:intergenic |
TTCAAAATTTCCCGAAAAGC+CGG | 0.380401 | 7.2:-70439607 | MS.gene53779:CDS |
CTTATATTTGTGGGAACAAA+TGG | 0.381637 | 7.2:-70439668 | MS.gene53779:CDS |
TGCTTATTTGATGGGAGTTA+TGG | 0.383685 | 7.2:-70439345 | MS.gene53779:CDS |
ATACGAATGATGCTATATTC+AGG | 0.390473 | 7.2:+70437873 | None:intergenic |
TGGTCTTAGGTTCTGGATCT+GGG | 0.391749 | 7.2:-70438917 | MS.gene53779:CDS |
TTATGGTGTATGTCTCTTGT+TGG | 0.401325 | 7.2:-70439369 | MS.gene53779:CDS |
TACGTTGGCACTTTACTAGT+TGG | 0.411740 | 7.2:-70438085 | MS.gene53779:CDS |
TTCATTGGCATGGGATGGCC+AGG | 0.416629 | 7.2:-70438115 | MS.gene53779:CDS |
TTACTAGTTGGACTTGGTTA+CGG | 0.418091 | 7.2:-70438073 | MS.gene53779:CDS |
AAAGTTCCAAATACTGATCA+TGG | 0.424968 | 7.2:+70438824 | None:intergenic |
TTATTTGGTTTAAGAAACTT+TGG | 0.428476 | 7.2:-70438013 | MS.gene53779:CDS |
ATGTGTATTCTTATATTTGT+GGG | 0.431347 | 7.2:-70439677 | MS.gene53779:CDS |
TCAAAATTTCCCGAAAAGCC+GGG | 0.432516 | 7.2:-70439606 | MS.gene53779:CDS |
GAGAAGACAAGAGTTCCAAC+AGG | 0.434937 | 7.2:+70437959 | None:intergenic |
GGGAGCAAGTCCACTTCCTT+AGG | 0.435147 | 7.2:+70439107 | None:intergenic |
TTGTTGGCTGCTTATTTGAT+GGG | 0.435499 | 7.2:-70439353 | MS.gene53779:CDS |
AATGACAAAGGAATTATAAT+CGG | 0.440338 | 7.2:+70439245 | None:intergenic |
CATATGGAACCTTCGCACTT+TGG | 0.443970 | 7.2:+70437824 | None:intergenic |
ATTCCTTTGTCATTAACCTT+CGG | 0.444957 | 7.2:-70439236 | MS.gene53779:CDS |
TGAAGTAATATTAAGTGAGT+TGG | 0.445671 | 7.2:-70439141 | MS.gene53779:CDS |
AAGGAGCTGTGAGGGTTAAG+AGG | 0.447202 | 7.2:-70439022 | MS.gene53779:CDS |
GGATTATGCATTGTTGCGGC+AGG | 0.460540 | 7.2:-70437773 | MS.gene53779:CDS |
ACTTGGTTACGGTGCTCATT+GGG | 0.463235 | 7.2:-70438062 | MS.gene53779:CDS |
CTGCCATGATAGTGGATGTC+AGG | 0.467856 | 7.2:+70437795 | None:intergenic |
AACTTTCTTGGACGTGTTGG+AGG | 0.470215 | 7.2:-70438807 | MS.gene53779:CDS |
GGTCAGATGAGCCAGTCTTT+GGG | 0.473244 | 7.2:-70438873 | MS.gene53779:CDS |
GCATAATCCTGCCATGATAG+TGG | 0.474193 | 7.2:+70437787 | None:intergenic |
CAAAGAAACTGTGTTGAAGT+AGG | 0.476111 | 7.2:+70439640 | None:intergenic |
CGTTTCTGCCTTTCCGACGC+AGG | 0.478111 | 7.2:+70439086 | None:intergenic |
TAGCATAAACAATCCTTGTT+CGG | 0.485537 | 7.2:+70437729 | None:intergenic |
TCTCTAGTCTCATTGCTAGT+AGG | 0.486798 | 7.2:-70437940 | MS.gene53779:CDS |
AATAATTCAGAGGCTGTAGC+TGG | 0.491533 | 7.2:+70438031 | None:intergenic |
GGTCCAGCATTGGTAGGAAT+AGG | 0.493698 | 7.2:-70439467 | MS.gene53779:CDS |
ATGTTCATTGTTAGACCTGT+CGG | 0.494988 | 7.2:-70439440 | MS.gene53779:CDS |
CTGCTGCAAGCTGCTGCAGA+AGG | 0.495751 | 7.2:-70439041 | MS.gene53779:CDS |
TTAATATTCATGGTTGCTGT+TGG | 0.497023 | 7.2:-70439488 | MS.gene53779:CDS |
AGACCTATTCCTACCAATGC+TGG | 0.505924 | 7.2:+70439464 | None:intergenic |
GGATGTCAGGAAGAAGCATA+TGG | 0.506273 | 7.2:+70437808 | None:intergenic |
CCCGAAAAGCCGGGGTCCCG+TGG | 0.506898 | 7.2:-70439597 | MS.gene53779:CDS |
TTTCTTGGACGTGTTGGAGG+CGG | 0.511820 | 7.2:-70438804 | MS.gene53779:CDS |
TGGAACTTTCTTGGACGTGT+TGG | 0.513657 | 7.2:-70438810 | MS.gene53779:CDS |
ACTTGTTTGTGACCTCCGAC+AGG | 0.514273 | 7.2:+70439425 | None:intergenic |
AAAAGCCGGGGTCCCGTGGT+TGG | 0.515273 | 7.2:-70439593 | MS.gene53779:CDS |
AGATGAGAAGCCTAAGGAAG+TGG | 0.515527 | 7.2:-70439117 | MS.gene53779:CDS |
TGTTTCTCGTGTTCCGAACA+AGG | 0.516891 | 7.2:-70437742 | MS.gene53779:CDS |
CCCTTTAAAATTCCAACCAC+GGG | 0.526339 | 7.2:+70439581 | None:intergenic |
CTTCCTGACATCCACTATCA+TGG | 0.528499 | 7.2:-70437798 | MS.gene53779:CDS |
ATCACTCTAGCAAACCCTGT+TGG | 0.532002 | 7.2:-70437974 | MS.gene53779:CDS |
GGTTGCTGTTGGTCCAGCAT+TGG | 0.533114 | 7.2:-70439477 | MS.gene53779:CDS |
AAACAAGTGCGGCCGTCGGA+TGG | 0.533967 | 7.2:-70439410 | MS.gene53779:CDS |
GTATCTAGTGCGCTTAATGT+TGG | 0.537346 | 7.2:-70437854 | MS.gene53779:CDS |
GCTGTTGGTCCAGCATTGGT+AGG | 0.539156 | 7.2:-70439473 | MS.gene53779:CDS |
GGCACTTTACTAGTTGGACT+TGG | 0.541785 | 7.2:-70438079 | MS.gene53779:CDS |
ACGATGCATGATCAGGGGAA+TGG | 0.543155 | 7.2:+70439510 | None:intergenic |
CATTGTCATATCCCAAAGAC+TGG | 0.548663 | 7.2:+70438862 | None:intergenic |
TGAAATGCAGCTAATGCAGC+TGG | 0.548805 | 7.2:+70438163 | None:intergenic |
AGAAGTGCTTCTTCCTCTAG+AGG | 0.550119 | 7.2:+70439200 | None:intergenic |
GTTTCTGCCTTTCCGACGCA+GGG | 0.551610 | 7.2:+70439087 | None:intergenic |
ACTTGCTCCCTGCGTCGGAA+AGG | 0.554542 | 7.2:-70439094 | MS.gene53779:CDS |
TGCTGCAGAAGGAGCTGTGA+GGG | 0.559996 | 7.2:-70439030 | MS.gene53779:CDS |
AAGGGCTTTGCTGGATTGAG+TGG | 0.565910 | 7.2:-70439563 | MS.gene53779:CDS |
CTGACATCCACTATCATGGC+AGG | 0.565999 | 7.2:-70437794 | MS.gene53779:CDS |
GAGCTGTGAGGGTTAAGAGG+AGG | 0.567528 | 7.2:-70439019 | MS.gene53779:CDS |
CAAAATTTCCCGAAAAGCCG+GGG | 0.569217 | 7.2:-70439605 | MS.gene53779:CDS |
AAATTCCAACCACGGGACCC+CGG | 0.570142 | 7.2:+70439588 | None:intergenic |
AGTGGACTTGCTCCCTGCGT+CGG | 0.572578 | 7.2:-70439099 | MS.gene53779:CDS |
GGCAGGATTATGCATTGTTG+CGG | 0.574036 | 7.2:-70437777 | MS.gene53779:CDS |
TTTCAACTAGCTATGACTGT+TGG | 0.574245 | 7.2:-70438145 | MS.gene53779:CDS |
GTTGGAAGATGAGAAGCCTA+AGG | 0.577142 | 7.2:-70439123 | MS.gene53779:CDS |
GTCATTAACCTTCGGCCCTG+CGG | 0.579108 | 7.2:-70439228 | MS.gene53779:CDS |
ATATTAACGATGCATGATCA+GGG | 0.581843 | 7.2:+70439504 | None:intergenic |
GTGAGGGTTAAGAGGAGGAG+AGG | 0.584228 | 7.2:-70439014 | MS.gene53779:CDS |
TCTTAAACCAAATAATTCAG+AGG | 0.585066 | 7.2:+70438021 | None:intergenic |
GCCCTTTAAAATTCCAACCA+CGG | 0.585494 | 7.2:+70439580 | None:intergenic |
GTAAAATCTTCTCCTCTATG+TGG | 0.590594 | 7.2:+70438990 | None:intergenic |
AGATCCAGAACCTAAGACCA+TGG | 0.600742 | 7.2:+70438920 | None:intergenic |
GTGCCAACGTACATTGAACC+TGG | 0.605966 | 7.2:+70438097 | None:intergenic |
AGGAGGAGAGGACCACATAG+AGG | 0.606447 | 7.2:-70439002 | MS.gene53779:CDS |
TTGACTGTAATTGACAATCT+CGG | 0.606676 | 7.2:-70438894 | MS.gene53779:CDS |
GGTGACGCGCCAAAGTGCGA+AGG | 0.621883 | 7.2:-70437833 | MS.gene53779:CDS |
GATGTGTATTCTTATATTTG+TGG | 0.622481 | 7.2:-70439678 | MS.gene53779:CDS |
GATTATGCATTGTTGCGGCA+GGG | 0.630180 | 7.2:-70437772 | MS.gene53779:CDS |
GGGCCGAAGGTTAATGACAA+AGG | 0.631796 | 7.2:+70439233 | None:intergenic |
TTTAATCAAAGCTTGCGTCA+AGG | 0.639178 | 7.2:+70438968 | None:intergenic |
GAAGCAGAGAAACAAGCTCA+TGG | 0.639621 | 7.2:-70437905 | MS.gene53779:CDS |
TCACAAACAAGTGCGGCCGT+CGG | 0.640280 | 7.2:-70439414 | MS.gene53779:CDS |
GCACTTCTTCCAGAAACAGA+AGG | 0.653183 | 7.2:-70439185 | MS.gene53779:CDS |
TTCATTGTTAGACCTGTCGG+AGG | 0.667965 | 7.2:-70439437 | MS.gene53779:CDS |
AGAAGACAAGAGTTCCAACA+GGG | 0.668994 | 7.2:+70437960 | None:intergenic |
TATTAACGATGCATGATCAG+GGG | 0.675991 | 7.2:+70439505 | None:intergenic |
GGATGGAAAATCTTTCACGT+TGG | 0.680385 | 7.2:-70439393 | MS.gene53779:CDS |
GAATTATAATCGGAGCAATG+AGG | 0.685023 | 7.2:+70439255 | None:intergenic |
CTGCTGCAGAAGGAGCTGTG+AGG | 0.702176 | 7.2:-70439031 | MS.gene53779:CDS |
TCGGAGGTCACAAACAAGTG+CGG | 0.705441 | 7.2:-70439421 | MS.gene53779:CDS |
TGGCCAGGTTCAATGTACGT+TGG | 0.706240 | 7.2:-70438100 | MS.gene53779:CDS |
GCAGAGAAACAAGCTCATGG+TGG | 0.726436 | 7.2:-70437902 | MS.gene53779:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATCAAACTTTTTTTATAT+AGG | + | chr7.2:70439024-70439043 | None:intergenic | 10.0% |
!! | AAGCTATAAATATTTAATCA+GGG | + | chr7.2:70438635-70438654 | None:intergenic | 15.0% |
!!! | TTAAATATTTATAGCTTGTT+TGG | - | chr7.2:70438638-70438657 | MS.gene53779:intron | 15.0% |
!! | AATGACAAAGGAATTATAAT+CGG | + | chr7.2:70438126-70438145 | None:intergenic | 20.0% |
!! | ATGTGTATTCTTATATTTGT+GGG | - | chr7.2:70437691-70437710 | MS.gene53779:CDS | 20.0% |
!! | CAAGCTATAAATATTTAATC+AGG | + | chr7.2:70438636-70438655 | None:intergenic | 20.0% |
!!! | TTATTTGGTTTAAGAAACTT+TGG | - | chr7.2:70439355-70439374 | MS.gene53779:CDS | 20.0% |
!!! | TTATTTTCACTTTCTTTTCT+TGG | + | chr7.2:70438800-70438819 | None:intergenic | 20.0% |
! | AATTAAGCTGTTTATCCAAA+AGG | - | chr7.2:70439102-70439121 | MS.gene53779:CDS | 25.0% |
! | TCTTAAACCAAATAATTCAG+AGG | + | chr7.2:70439350-70439369 | None:intergenic | 25.0% |
! | TCTTGTCAAAATTTCTAACA+TGG | - | chr7.2:70439131-70439150 | MS.gene53779:CDS | 25.0% |
! | TGAAGTAATATTAAGTGAGT+TGG | - | chr7.2:70438227-70438246 | MS.gene53779:intron | 25.0% |
!! | CAATACAAAGAAAGTTTTCA+TGG | + | chr7.2:70438747-70438766 | None:intergenic | 25.0% |
!! | CTTTGATTAAAGCAGATTTT+TGG | - | chr7.2:70438412-70438431 | MS.gene53779:intron | 25.0% |
AAAGTTCCAAATACTGATCA+TGG | + | chr7.2:70438547-70438566 | None:intergenic | 30.0% | |
AATATTAACGATGCATGATC+AGG | + | chr7.2:70437868-70437887 | None:intergenic | 30.0% | |
ATACGAATGATGCTATATTC+AGG | + | chr7.2:70439498-70439517 | None:intergenic | 30.0% | |
ATATTAACGATGCATGATCA+GGG | + | chr7.2:70437867-70437886 | None:intergenic | 30.0% | |
ATTCCTTTGTCATTAACCTT+CGG | - | chr7.2:70438132-70438151 | MS.gene53779:CDS | 30.0% | |
CTTATATTTGTGGGAACAAA+TGG | - | chr7.2:70437700-70437719 | MS.gene53779:CDS | 30.0% | |
TAGCATAAACAATCCTTGTT+CGG | + | chr7.2:70439642-70439661 | None:intergenic | 30.0% | |
TCATGCATCGTTAATATTCA+TGG | - | chr7.2:70437870-70437889 | MS.gene53779:CDS | 30.0% | |
TGGTTTCCTATATAGAACTT+CGG | + | chr7.2:70438727-70438746 | None:intergenic | 30.0% | |
TTAATATTCATGGTTGCTGT+TGG | - | chr7.2:70437880-70437899 | MS.gene53779:CDS | 30.0% | |
TTGACTGTAATTGACAATCT+CGG | - | chr7.2:70438474-70438493 | MS.gene53779:intron | 30.0% | |
! | ATCAGTATTTGGAACTTTCT+TGG | - | chr7.2:70438549-70438568 | MS.gene53779:intron | 30.0% |
! | ATTGTTTATGCTAGCTTGTA+TGG | - | chr7.2:70439649-70439668 | MS.gene53779:CDS | 30.0% |
!! | AAATCTTTCACGTTGGTTTA+TGG | - | chr7.2:70437982-70438001 | MS.gene53779:CDS | 30.0% |
!! | ATGATGCTATATTCAGGTTT+TGG | + | chr7.2:70439492-70439511 | None:intergenic | 30.0% |
!! | CTTGGTTCAAAGTTTTGTAT+AGG | + | chr7.2:70438782-70438801 | None:intergenic | 30.0% |
AAACACTTGTGAGGTTGTTT+GGG | - | chr7.2:70438906-70438925 | MS.gene53779:CDS | 35.0% | |
ATGTTCATTGTTAGACCTGT+CGG | - | chr7.2:70437928-70437947 | MS.gene53779:CDS | 35.0% | |
CAAAGAAACTGTGTTGAAGT+AGG | + | chr7.2:70437731-70437750 | None:intergenic | 35.0% | |
CTACTTCAACACAGTTTCTT+TGG | - | chr7.2:70437729-70437748 | MS.gene53779:CDS | 35.0% | |
CTATATAGAACTTCGGAAAC+AGG | + | chr7.2:70438720-70438739 | None:intergenic | 35.0% | |
CTGTTTCCGAAGTTCTATAT+AGG | - | chr7.2:70438718-70438737 | MS.gene53779:intron | 35.0% | |
GAATTATAATCGGAGCAATG+AGG | + | chr7.2:70438116-70438135 | None:intergenic | 35.0% | |
GTAAAATCTTCTCCTCTATG+TGG | + | chr7.2:70438381-70438400 | None:intergenic | 35.0% | |
TAAACACTTGTGAGGTTGTT+TGG | - | chr7.2:70438905-70438924 | MS.gene53779:CDS | 35.0% | |
TATTAACGATGCATGATCAG+GGG | + | chr7.2:70437866-70437885 | None:intergenic | 35.0% | |
TGCTTATTTGATGGGAGTTA+TGG | - | chr7.2:70438023-70438042 | MS.gene53779:CDS | 35.0% | |
TTATGGTGTATGTCTCTTGT+TGG | - | chr7.2:70437999-70438018 | MS.gene53779:CDS | 35.0% | |
TTCAAAATTTCCCGAAAAGC+CGG | - | chr7.2:70437761-70437780 | MS.gene53779:CDS | 35.0% | |
TTTAATCAAAGCTTGCGTCA+AGG | + | chr7.2:70438403-70438422 | None:intergenic | 35.0% | |
TTTCAACTAGCTATGACTGT+TGG | - | chr7.2:70439223-70439242 | MS.gene53779:CDS | 35.0% | |
! | ACTGTTGGTCATCTTTTCAT+TGG | - | chr7.2:70439238-70439257 | MS.gene53779:CDS | 35.0% |
! | CTTTTCATTTCCATGGTCTT+AGG | - | chr7.2:70438438-70438457 | MS.gene53779:intron | 35.0% |
! | TTACTAGTTGGACTTGGTTA+CGG | - | chr7.2:70439295-70439314 | MS.gene53779:CDS | 35.0% |
! | TTGACAAGATTATCGCCTTT+TGG | + | chr7.2:70439120-70439139 | None:intergenic | 35.0% |
! | TTGGCTTCTTTTCATTTCCA+TGG | - | chr7.2:70438431-70438450 | MS.gene53779:intron | 35.0% |
! | TTGTTGGCTGCTTATTTGAT+GGG | - | chr7.2:70438015-70438034 | MS.gene53779:CDS | 35.0% |
AATAATTCAGAGGCTGTAGC+TGG | + | chr7.2:70439340-70439359 | None:intergenic | 40.0% | |
AGAAAATCGATTGAGCCCTT+AGG | - | chr7.2:70438854-70438873 | MS.gene53779:CDS | 40.0% | |
AGAAGACAAGAGTTCCAACA+GGG | + | chr7.2:70439411-70439430 | None:intergenic | 40.0% | |
AGCTCAAATAAGCCAACCTA+AGG | + | chr7.2:70438873-70438892 | None:intergenic | 40.0% | |
CATTGTCATATCCCAAAGAC+TGG | + | chr7.2:70438509-70438528 | None:intergenic | 40.0% | |
CTTATTTCCTTGAGCTCTCT+AGG | - | chr7.2:70438974-70438993 | MS.gene53779:CDS | 40.0% | |
GAGCAATGAGGATCAAAAAG+AGG | + | chr7.2:70438104-70438123 | None:intergenic | 40.0% | |
GCTACAGCCTCTGAATTATT+TGG | - | chr7.2:70439340-70439359 | MS.gene53779:CDS | 40.0% | |
GCTCAAATAAGCCAACCTAA+GGG | + | chr7.2:70438872-70438891 | None:intergenic | 40.0% | |
GGATGGAAAATCTTTCACGT+TGG | - | chr7.2:70437975-70437994 | MS.gene53779:CDS | 40.0% | |
GTATCTAGTGCGCTTAATGT+TGG | - | chr7.2:70439514-70439533 | MS.gene53779:CDS | 40.0% | |
TACGAGCATAAACACTTGTG+AGG | - | chr7.2:70438897-70438916 | MS.gene53779:CDS | 40.0% | |
TACGTTGGCACTTTACTAGT+TGG | - | chr7.2:70439283-70439302 | MS.gene53779:CDS | 40.0% | |
TCAAAATTTCCCGAAAAGCC+GGG | - | chr7.2:70437762-70437781 | MS.gene53779:CDS | 40.0% | |
TCGTCTCCATGATCAGTATT+TGG | - | chr7.2:70438538-70438557 | MS.gene53779:intron | 40.0% | |
TCTCTAGTCTCATTGCTAGT+AGG | - | chr7.2:70439428-70439447 | MS.gene53779:CDS | 40.0% | |
TGAGATTGTCCTTCTGTTTC+TGG | + | chr7.2:70438195-70438214 | None:intergenic | 40.0% | |
! | ATCTTTTCATTGGCATGGGA+TGG | - | chr7.2:70439248-70439267 | MS.gene53779:CDS | 40.0% |
! | ATTTCCATGGTCTTAGGTTC+TGG | - | chr7.2:70438444-70438463 | MS.gene53779:intron | 40.0% |
! | CCCGTGGTTGGAATTTTAAA+GGG | - | chr7.2:70437787-70437806 | MS.gene53779:CDS | 40.0% |
! | CTTGTTGGCTGCTTATTTGA+TGG | - | chr7.2:70438014-70438033 | MS.gene53779:CDS | 40.0% |
! | GGTCATCTTTTCATTGGCAT+GGG | - | chr7.2:70439244-70439263 | MS.gene53779:CDS | 40.0% |
! | GTGAAAGATTTTCCATCCGA+CGG | + | chr7.2:70437973-70437992 | None:intergenic | 40.0% |
! | TCCCGTGGTTGGAATTTTAA+AGG | - | chr7.2:70437786-70437805 | MS.gene53779:CDS | 40.0% |
! | TGGTCATCTTTTCATTGGCA+TGG | - | chr7.2:70439243-70439262 | MS.gene53779:CDS | 40.0% |
!! | CCCTTTAAAATTCCAACCAC+GGG | + | chr7.2:70437790-70437809 | None:intergenic | 40.0% |
!! | GCCCTTTAAAATTCCAACCA+CGG | + | chr7.2:70437791-70437810 | None:intergenic | 40.0% |
!! | GGAATTTTAAAGGGCTTTGC+TGG | - | chr7.2:70437796-70437815 | MS.gene53779:CDS | 40.0% |
AACTTTCTTGGACGTGTTGG+AGG | - | chr7.2:70438561-70438580 | MS.gene53779:intron | 45.0% | |
AATCGATTGAGCCCTTAGGT+TGG | - | chr7.2:70438858-70438877 | MS.gene53779:CDS | 45.0% | |
ACTTGGTTACGGTGCTCATT+GGG | - | chr7.2:70439306-70439325 | MS.gene53779:CDS | 45.0% | |
AGACCTATTCCTACCAATGC+TGG | + | chr7.2:70437907-70437926 | None:intergenic | 45.0% | |
AGATCCAGAACCTAAGACCA+TGG | + | chr7.2:70438451-70438470 | None:intergenic | 45.0% | |
AGATGAGAAGCCTAAGGAAG+TGG | - | chr7.2:70438251-70438270 | MS.gene53779:intron | 45.0% | |
ATCACTCTAGCAAACCCTGT+TGG | - | chr7.2:70439394-70439413 | MS.gene53779:CDS | 45.0% | |
ATTTCCTTGAGCTCTCTAGG+AGG | - | chr7.2:70438977-70438996 | MS.gene53779:CDS | 45.0% | |
CAAAATTTCCCGAAAAGCCG+GGG | - | chr7.2:70437763-70437782 | MS.gene53779:CDS | 45.0% | |
CATATGGAACCTTCGCACTT+TGG | + | chr7.2:70439547-70439566 | None:intergenic | 45.0% | |
CCCTGCTCAGTAAAACACAT+CGG | + | chr7.2:70439168-70439187 | None:intergenic | 45.0% | |
CTTCCTGACATCCACTATCA+TGG | - | chr7.2:70439570-70439589 | MS.gene53779:CDS | 45.0% | |
GAAGCAGAGAAACAAGCTCA+TGG | - | chr7.2:70439463-70439482 | MS.gene53779:CDS | 45.0% | |
GAGAAGACAAGAGTTCCAAC+AGG | + | chr7.2:70439412-70439431 | None:intergenic | 45.0% | |
GATTATGCATTGTTGCGGCA+GGG | - | chr7.2:70439596-70439615 | MS.gene53779:CDS | 45.0% | |
GCACTTCTTCCAGAAACAGA+AGG | - | chr7.2:70438183-70438202 | MS.gene53779:CDS | 45.0% | |
GCATAATCCTGCCATGATAG+TGG | + | chr7.2:70439584-70439603 | None:intergenic | 45.0% | |
GGCACTTTACTAGTTGGACT+TGG | - | chr7.2:70439289-70439308 | MS.gene53779:CDS | 45.0% | |
GGCAGGATTATGCATTGTTG+CGG | - | chr7.2:70439591-70439610 | MS.gene53779:CDS | 45.0% | |
GTTGGAAGATGAGAAGCCTA+AGG | - | chr7.2:70438245-70438264 | MS.gene53779:intron | 45.0% | |
TGAAATGCAGCTAATGCAGC+TGG | + | chr7.2:70439208-70439227 | None:intergenic | 45.0% | |
TGGAACTTTCTTGGACGTGT+TGG | - | chr7.2:70438558-70438577 | MS.gene53779:intron | 45.0% | |
TGTTTCTCGTGTTCCGAACA+AGG | - | chr7.2:70439626-70439645 | MS.gene53779:CDS | 45.0% | |
TTCATTGTTAGACCTGTCGG+AGG | - | chr7.2:70437931-70437950 | MS.gene53779:CDS | 45.0% | |
! | CCGATGTGTTTTACTGAGCA+GGG | - | chr7.2:70439165-70439184 | MS.gene53779:CDS | 45.0% |
! | GGATGTCAGGAAGAAGCATA+TGG | + | chr7.2:70439563-70439582 | None:intergenic | 45.0% |
! | TCCGATGTGTTTTACTGAGC+AGG | - | chr7.2:70439164-70439183 | MS.gene53779:CDS | 45.0% |
! | TTTCCTTGAGCTCTCTAGGA+GGG | - | chr7.2:70438978-70438997 | MS.gene53779:CDS | 45.0% |
!! | AGAAGTGCTTCTTCCTCTAG+AGG | + | chr7.2:70438171-70438190 | None:intergenic | 45.0% |
!! | ATGGTCTTAGGTTCTGGATC+TGG | - | chr7.2:70438450-70438469 | MS.gene53779:intron | 45.0% |
!! | TGGTCTTAGGTTCTGGATCT+GGG | - | chr7.2:70438451-70438470 | MS.gene53779:intron | 45.0% |
AAGGAGCTGTGAGGGTTAAG+AGG | - | chr7.2:70438346-70438365 | MS.gene53779:intron | 50.0% | |
AAGGGCTTTGCTGGATTGAG+TGG | - | chr7.2:70437805-70437824 | MS.gene53779:CDS | 50.0% | |
ACGATGCATGATCAGGGGAA+TGG | + | chr7.2:70437861-70437880 | None:intergenic | 50.0% | |
ACTTGTTTGTGACCTCCGAC+AGG | + | chr7.2:70437946-70437965 | None:intergenic | 50.0% | |
CTGACATCCACTATCATGGC+AGG | - | chr7.2:70439574-70439593 | MS.gene53779:CDS | 50.0% | |
GCAGAGAAACAAGCTCATGG+TGG | - | chr7.2:70439466-70439485 | MS.gene53779:CDS | 50.0% | |
GGATTATGCATTGTTGCGGC+AGG | - | chr7.2:70439595-70439614 | MS.gene53779:CDS | 50.0% | |
GGGCCGAAGGTTAATGACAA+AGG | + | chr7.2:70438138-70438157 | None:intergenic | 50.0% | |
GGTCAGATGAGCCAGTCTTT+GGG | - | chr7.2:70438495-70438514 | MS.gene53779:intron | 50.0% | |
GTGCCAACGTACATTGAACC+TGG | + | chr7.2:70439274-70439293 | None:intergenic | 50.0% | |
TCGGAGGTCACAAACAAGTG+CGG | - | chr7.2:70437947-70437966 | MS.gene53779:CDS | 50.0% | |
TGGCCAGGTTCAATGTACGT+TGG | - | chr7.2:70439268-70439287 | MS.gene53779:CDS | 50.0% | |
TTTCTTGGACGTGTTGGAGG+CGG | - | chr7.2:70438564-70438583 | MS.gene53779:intron | 50.0% | |
! | GACTTGGTTACGGTGCTCAT+TGG | - | chr7.2:70439305-70439324 | MS.gene53779:CDS | 50.0% |
!! | CCTCTAGAGGTTTTTCCGCA+GGG | + | chr7.2:70438158-70438177 | None:intergenic | 50.0% |
!! | CTGCCATGATAGTGGATGTC+AGG | + | chr7.2:70439576-70439595 | None:intergenic | 50.0% |
!! | GGTCCAGCATTGGTAGGAAT+AGG | - | chr7.2:70437901-70437920 | MS.gene53779:CDS | 50.0% |
!! | TCCTCTAGAGGTTTTTCCGC+AGG | + | chr7.2:70438159-70438178 | None:intergenic | 50.0% |
AAATTCCAACCACGGGACCC+CGG | + | chr7.2:70437783-70437802 | None:intergenic | 55.0% | |
AAGCCCTCCTAGAGAGCTCA+AGG | + | chr7.2:70438984-70439003 | None:intergenic | 55.0% | |
AGGAGGAGAGGACCACATAG+AGG | - | chr7.2:70438366-70438385 | MS.gene53779:intron | 55.0% | |
CCCTGCGGAAAAACCTCTAG+AGG | - | chr7.2:70438155-70438174 | MS.gene53779:CDS | 55.0% | |
CGGTCAGATGAGCCAGTCTT+TGG | - | chr7.2:70438494-70438513 | MS.gene53779:intron | 55.0% | |
GAGCTGTGAGGGTTAAGAGG+AGG | - | chr7.2:70438349-70438368 | MS.gene53779:intron | 55.0% | |
GGGAGCAAGTCCACTTCCTT+AGG | + | chr7.2:70438264-70438283 | None:intergenic | 55.0% | |
GTCATTAACCTTCGGCCCTG+CGG | - | chr7.2:70438140-70438159 | MS.gene53779:CDS | 55.0% | |
GTGAGGGTTAAGAGGAGGAG+AGG | - | chr7.2:70438354-70438373 | MS.gene53779:intron | 55.0% | |
GTTTCTGCCTTTCCGACGCA+GGG | + | chr7.2:70438284-70438303 | None:intergenic | 55.0% | |
TCACAAACAAGTGCGGCCGT+CGG | - | chr7.2:70437954-70437973 | MS.gene53779:CDS | 55.0% | |
TGCTGCAGAAGGAGCTGTGA+GGG | - | chr7.2:70438338-70438357 | MS.gene53779:intron | 55.0% | |
TTCATTGGCATGGGATGGCC+AGG | - | chr7.2:70439253-70439272 | MS.gene53779:CDS | 55.0% | |
! | GCAGCTAATGCAGCTGGTCT+TGG | + | chr7.2:70439202-70439221 | None:intergenic | 55.0% |
! | GGTTGCTGTTGGTCCAGCAT+TGG | - | chr7.2:70437891-70437910 | MS.gene53779:CDS | 55.0% |
!! | GCTGTTGGTCCAGCATTGGT+AGG | - | chr7.2:70437895-70437914 | MS.gene53779:CDS | 55.0% |
AAACAAGTGCGGCCGTCGGA+TGG | - | chr7.2:70437958-70437977 | MS.gene53779:CDS | 60.0% | |
ACTTGCTCCCTGCGTCGGAA+AGG | - | chr7.2:70438274-70438293 | MS.gene53779:intron | 60.0% | |
CGTTTCTGCCTTTCCGACGC+AGG | + | chr7.2:70438285-70438304 | None:intergenic | 60.0% | |
CTGCTGCAAGCTGCTGCAGA+AGG | - | chr7.2:70438327-70438346 | MS.gene53779:intron | 60.0% | |
CTGCTGCAGAAGGAGCTGTG+AGG | - | chr7.2:70438337-70438356 | MS.gene53779:intron | 60.0% | |
! | AGGTTTTTCCGCAGGGCCGA+AGG | + | chr7.2:70438151-70438170 | None:intergenic | 60.0% |
! | AGTGGACTTGCTCCCTGCGT+CGG | - | chr7.2:70438269-70438288 | MS.gene53779:intron | 60.0% |
AAAAGCCGGGGTCCCGTGGT+TGG | - | chr7.2:70437775-70437794 | MS.gene53779:CDS | 65.0% | |
GGTGACGCGCCAAAGTGCGA+AGG | - | chr7.2:70439535-70439554 | MS.gene53779:CDS | 65.0% | |
! | ACCACGGGACCCCGGCTTTT+CGG | + | chr7.2:70437775-70437794 | None:intergenic | 65.0% |
! | CCACGGGACCCCGGCTTTTC+GGG | + | chr7.2:70437774-70437793 | None:intergenic | 70.0% |
CCCGAAAAGCCGGGGTCCCG+TGG | - | chr7.2:70437771-70437790 | MS.gene53779:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 70437691 | 70439699 | 70437691 | ID=MS.gene53779 |
chr7.2 | mRNA | 70437691 | 70439699 | 70437691 | ID=MS.gene53779.t1;Parent=MS.gene53779 |
chr7.2 | exon | 70438780 | 70439699 | 70438780 | ID=MS.gene53779.t1.exon1;Parent=MS.gene53779.t1 |
chr7.2 | CDS | 70438780 | 70439699 | 70438780 | ID=cds.MS.gene53779.t1;Parent=MS.gene53779.t1 |
chr7.2 | exon | 70437691 | 70438204 | 70437691 | ID=MS.gene53779.t1.exon2;Parent=MS.gene53779.t1 |
chr7.2 | CDS | 70437691 | 70438204 | 70437691 | ID=cds.MS.gene53779.t1;Parent=MS.gene53779.t1 |
Gene Sequence |
Protein sequence |