AlfalfaGEDB | MS.gene53848

M. sativa cultivar XinJiangDaYe / MS.gene53848

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53848.t1	RHN44458.1	91.7	228	18	1	64	291	644	870	2.60E-114	421.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53848.t1	Q9SCZ4	53.5	198	86	3	63	256	656	851	2.2e-53	210.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53848.t1	A0A072TW81	91.7	228	18	1	64	291	644	870	1.9e-114	421.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene53848	0.822855	1.89E-53	-1.69E-46
MS.gene052011	MS.gene53848	-0.829526	4.90E-55	-1.69E-46
MS.gene052253	MS.gene53848	0.815044	1.13E-51	-1.69E-46
MS.gene053873	MS.gene53848	0.804348	2.26E-49	-1.69E-46
MS.gene054102	MS.gene53848	0.834996	2.17E-56	-1.69E-46
MS.gene05413	MS.gene53848	0.801452	8.94E-49	-1.69E-46
MS.gene054183	MS.gene53848	0.851951	6.35E-61	-1.69E-46
MS.gene054918	MS.gene53848	0.800126	1.67E-48	-1.69E-46
MS.gene054920	MS.gene53848	0.806462	8.13E-50	-1.69E-46
MS.gene056514	MS.gene53848	0.833433	5.35E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53848.t1	MTR_7g015320	91.667	228	18	1	64	291	644	870	6.30e-148	436
MS.gene53848.t1	MTR_4g052290	81.385	231	39	2	64	291	648	877	1.37e-127	384
MS.gene53848.t1	MTR_7g015310	82.456	228	33	2	64	291	645	865	4.61e-127	382
MS.gene53848.t1	MTR_7g015250	81.545	233	38	3	64	292	639	870	5.18e-127	383
MS.gene53848.t1	MTR_7g015230	81.579	228	35	2	64	291	655	875	5.70e-127	382
MS.gene53848.t1	MTR_7g015280	78.947	228	36	1	64	291	635	850	6.84e-122	369
MS.gene53848.t1	MTR_7g015240	89.175	194	17	2	64	254	642	834	2.20e-117	357
MS.gene53848.t1	MTR_7g015290	87.429	175	20	2	64	237	161	334	4.51e-107	314
MS.gene53848.t1	MTR_7g015390	64.706	238	72	3	63	288	652	889	2.77e-96	303
MS.gene53848.t1	MTR_7g015670	65.126	238	71	3	63	288	655	892	5.79e-96	302

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53848.t1	AT3G51550	53.535	198	86	3	63	256	656	851	4.62e-62	211
MS.gene53848.t1	AT5G39000	48.133	241	102	5	63	288	641	873	1.08e-58	201
MS.gene53848.t1	AT5G38990	47.303	241	104	5	63	288	648	880	6.69e-58	199
MS.gene53848.t1	AT3G04690	58.125	160	65	2	63	222	636	793	3.60e-56	194
MS.gene53848.t1	AT5G28680	59.375	160	63	2	63	222	640	797	7.20e-56	193
MS.gene53848.t1	AT5G28680	59.375	160	63	2	63	222	640	797	7.20e-56	193
MS.gene53848.t1	AT5G59700	50.811	185	88	3	64	247	602	784	2.66e-49	175
MS.gene53848.t1	AT2G39360	52.830	159	73	2	64	222	608	764	5.57e-48	171
MS.gene53848.t1	AT4G39110	49.162	179	86	3	64	240	646	821	7.36e-48	171
MS.gene53848.t1	AT3G46290	54.088	159	71	2	64	222	605	761	2.25e-47	169

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Find 80 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGTTCTTGAGTACT+TGG	0.433805	7.4:-84262211	None:intergenic
AAAGAGCACCAACATATTGT+TGG	0.456703	7.4:+84261604	MS.gene53848:CDS
AAATAGTGGATCCATTCTTA+AGG	0.409527	7.4:+84261915	MS.gene53848:CDS
AAATCTGATGTGTACTCATT+CGG	0.473577	7.4:+84261773	MS.gene53848:CDS
AACATTCTTTCTCTGAGATT+GGG	0.370726	7.4:+84262224	MS.gene53848:CDS
AATAGTGGATCCATTCTTAA+GGG	0.450922	7.4:+84261916	MS.gene53848:CDS
ACACAGCTAGTCTAGTTTGT+TGG	0.430253	7.4:+84261855	MS.gene53848:CDS
ACATATTGTTGGATGAGAAA+TGG	0.421150	7.4:+84261615	MS.gene53848:CDS
ACGACCCTCAATGAGTCAAG+TGG	0.611772	7.4:+84262012	MS.gene53848:CDS
AGAGTTTGCGTTGCAATTGG+CGG	0.505167	7.4:+84262045	MS.gene53848:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATGTTCTTGAGTACT+TGG	-	chr7.4:84262214-84262233	None:intergenic	30.0%
AAATCTGATGTGTACTCATT+CGG	+	chr7.4:84261773-84261792	MS.gene53848:CDS	30.0%
ACATATTGTTGGATGAGAAA+TGG	+	chr7.4:84261615-84261634	MS.gene53848:CDS	30.0%
ATAGCTAAGGTTTCTGATTT+CGG	+	chr7.4:84261638-84261657	MS.gene53848:CDS	30.0%
ATTCTTAAGGGATTCTATCA+CGG	+	chr7.4:84261928-84261947	MS.gene53848:CDS	30.0%
CTTCAATCTTCAAATTTGCA+AGG	+	chr7.4:84261553-84261572	MS.gene53848:CDS	30.0%
TGCAAATTTGAAGATTGAAG+CGG	-	chr7.4:84261553-84261572	None:intergenic	30.0%
TTTCTCATCCAACAATATGT+TGG	-	chr7.4:84261615-84261634	None:intergenic	30.0%
AAGATTGAAGCGGCAAAAAT+CGG	-	chr7.4:84261543-84261562	None:intergenic	35.0%
ATAATTCACGCAAGAAAAGC+TGG	+	chr7.4:84261473-84261492	MS.gene53848:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	84261398	84262337	84261398	ID=MS.gene53848
chr7.4	mRNA	84261398	84262337	84261398	ID=MS.gene53848.t1;Parent=MS.gene53848
chr7.4	exon	84261398	84262271	84261398	ID=MS.gene53848.t1.exon1;Parent=MS.gene53848.t1
chr7.4	CDS	84261398	84262271	84261398	ID=cds.MS.gene53848.t1;Parent=MS.gene53848.t1
chr7.4	exon	84262333	84262337	84262333	ID=MS.gene53848.t1.exon2;Parent=MS.gene53848.t1
chr7.4	CDS	84262333	84262337	84262333	ID=cds.MS.gene53848.t1;Parent=MS.gene53848.t1

Gene Sequence

>MS.gene53848

ATGTACGACCATAGGACAGAAAAAATTCTACCTTATCCGCAACATCGGGCGCCGATGATCCAAGATCGGGCGCCGATAATTCACGCAAGAAAAGCTGGCCTGGCACACATGAAATCGGGCGCCGAGAGCACAAGCTCGGGCCCCGATTTTTGCCGCTTCAATCTTCAAATTTGCAAGGCAATTACAACAATAATACATCGTGACGTAAAGAGCACCAACATATTGTTGGATGAGAAATGGATAGCTAAGGTTTCTGATTTCGGGTTATCCAAGGTGGGACCGACAGGTATATCGACTACCCACGTCAGCATGATGGTTAAAGGAAGCTTGGGGTATTTAGATCCTGAGTACTATATGTTCCAAAGGCTTACTCTTAAATCTGATGTGTACTCATTCGGTGTGGTGCTTCTTGAGGTGTTCTGTGCTAGGCCACCATTGATTCGCGATTTGGATAAGAACACAGCTAGTCTAGTTTGTTGGTTTAAAAGATGCTATGATGAAGGTGTAGCGATTGAACAAATAGTGGATCCATTCTTAAGGGATTCTATCACGGGTGAGTGTTTGGAATATTATTGCAAGTTGGCTTTGAGTTGTTTGCATGATGATGGAATTCAACGACCCTCAATGAGTCAAGTGGTTTGGGGTTTAGAGTTTGCGTTGCAATTGGCGGTGAGTCAGAAAGATAGTGACGAGGTTGGTACGACCCAAAAAGAGATGATAGATCTACGGTTCTCGCAATTTATGAGTGATGAAGGGAGTGATCTGCATTTCGCAAGATCCCGCACCTATAAGGAGAGCACAATCTCAGTGAGGCCAAGTACTCAAGAACATTCTTTCTCTGAGATTGGGAATCAAAGAACACGATCGTATTCATGTGAAAATTTCAAAGTTAACATTTAGCGATTAATATGGAACATCACTTTATATATGTATAGCGTAA

Protein sequence

>MS.gene53848.t1

MYDHRTEKILPYPQHRAPMIQDRAPIIHARKAGLAHMKSGAESTSSGPDFCRFNLQICKAITTIIHRDVKSTNILLDEKWIAKVSDFGLSKVGPTGISTTHVSMMVKGSLGYLDPEYYMFQRLTLKSDVYSFGVVLLEVFCARPPLIRDLDKNTASLVCWFKRCYDEGVAIEQIVDPFLRDSITGECLEYYCKLALSCLHDDGIQRPSMSQVVWGLEFALQLAVSQKDSDEVGTTQKEMIDLRFSQFMSDEGSDLHFARSRTYKESTISVRPSTQEHSFSEIGNQRTRSYSS