AlfalfaGEDB | MS.gene54254

M. sativa cultivar XinJiangDaYe / MS.gene54254

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54254.t1	XP_003617703.2	75.5	503	121	2	1	502	1	502	3.40E-218	767.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54254.t1	O48923	64.6	512	163	8	1	500	3	508	2.0e-182	640.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54254.t1	G7K4E6	75.5	503	121	2	1	502	1	502	2.4e-218	767.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene54254	0.810499	1.12E-50	-1.69E-46
MS.gene049549	MS.gene54254	0.816894	4.37E-52	-1.69E-46
MS.gene05104	MS.gene54254	0.802674	5.01E-49	-1.69E-46
MS.gene052211	MS.gene54254	0.801551	8.54E-49	-1.69E-46
MS.gene05240	MS.gene54254	0.819183	1.33E-52	-1.69E-46
MS.gene052606	MS.gene54254	0.818721	1.69E-52	-1.69E-46
MS.gene052702	MS.gene54254	0.801976	6.98E-49	-1.69E-46
MS.gene054146	MS.gene54254	0.814977	1.17E-51	-1.69E-46
MS.gene054277	MS.gene54254	0.801325	9.50E-49	-1.69E-46
MS.gene054742	MS.gene54254	0.808325	3.27E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene54254.t1	MTR_5g094540	75.547	503	121	2	1	502	1	502	791
MS.gene54254.t1	MTR_5g073250	73.705	502	130	2	1	501	1	501	786
MS.gene54254.t1	MTR_5g094560	74.751	503	125	2	1	502	1	502	785
MS.gene54254.t1	MTR_5g094550	74.751	503	125	2	1	502	1	502	783
MS.gene54254.t1	MTR_5g094520	74.950	503	124	2	1	502	32	533	782
MS.gene54254.t1	MTR_5g094570	72.510	502	136	2	1	501	1	501	763
MS.gene54254.t1	MTR_4g048580	70.717	502	145	2	1	501	1	501	750
MS.gene54254.t1	MTR_5g073320	72.962	503	133	3	1	501	1	502	748
MS.gene54254.t1	MTR_5g094660	72.112	502	137	3	1	501	1	500	721
MS.gene54254.t1	MTR_5g073230	71.816	479	117	5	26	502	29	491	711

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54254.t1	AT1G13110	40.476	504	282	7	10	498	1	501	7.44e-132	392
MS.gene54254.t1	AT3G26300	41.317	501	275	6	8	497	2	494	3.59e-131	390
MS.gene54254.t1	AT1G13080	40.864	509	275	11	10	500	1	501	1.10e-130	389
MS.gene54254.t1	AT3G26330	42.612	467	257	5	38	497	32	494	9.24e-130	387
MS.gene54254.t1	AT5G25120	40.283	494	278	7	13	498	7	491	5.68e-128	382
MS.gene54254.t1	AT3G26310	41.561	474	258	6	39	501	32	497	1.13e-127	381
MS.gene54254.t1	AT3G26280	42.084	499	261	13	17	500	33	518	6.78e-127	380
MS.gene54254.t1	AT3G26320	41.667	468	262	5	38	498	32	495	7.04e-127	379
MS.gene54254.t1	AT3G26280	42.084	499	261	13	17	500	16	501	7.81e-127	379
MS.gene54254.t1	AT5G57260	41.614	471	262	6	38	498	31	498	1.69e-126	378

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Find 104 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGTGTTGGTGGTCC+TGG	0.495507	6.2:+69895863	None:intergenic
AAAGTCTGGCCTATCACTAA+AGG	0.510077	6.2:+69895673	None:intergenic
AAATCAATATCTGAAAGTGA+AGG	0.631460	6.2:-69895488	MS.gene54254:CDS
AACAATGAGGCTACATCCTC+CGG	0.475914	6.2:-69894790	MS.gene54254:CDS
AAGAAGAGTGTACGACATAA+AGG	0.353945	6.2:-69894871	MS.gene54254:CDS
AAGAGTCGTTATTAATGCTT+GGG	0.446869	6.2:-69894697	MS.gene54254:CDS
AAGATTATTTCAATGACATA+TGG	0.355933	6.2:-69895443	MS.gene54254:CDS
AAGGAACTTGGGAGTTTGTT+AGG	0.306132	6.2:-69895356	MS.gene54254:CDS
AAGGAGAATGTGTCCTGGTA+TGG	0.578564	6.2:-69894556	MS.gene54254:CDS
AATAGCACAATTGATTTCAA+AGG	0.513777	6.2:-69894612	MS.gene54254:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTCGTTATTAATGCTT+GGG	-	chr6.2:69895663-69895682	MS.gene54254:CDS	30.0%
AATAGTTACTTCACCTGAAA+TGG	-	chr6.2:69894634-69894653	MS.gene54254:CDS	30.0%
AGTGTTCATATCAGCAATTA+AGG	-	chr6.2:69894985-69895004	MS.gene54254:intron	30.0%
ATATCAGCAATTAAGGAACT+TGG	-	chr6.2:69894992-69895011	MS.gene54254:intron	30.0%
ATCATCAGATGTTCTGTTAT+GGG	-	chr6.2:69895411-69895430	MS.gene54254:CDS	30.0%
CAATATAAAATCAGTCATCC+TGG	-	chr6.2:69895258-69895277	MS.gene54254:CDS	30.0%
CTATCATCAAAGAAACAATG+AGG	-	chr6.2:69895557-69895576	MS.gene54254:CDS	30.0%
CTTTCTCTTGGAATTAACAA+TGG	+	chr6.2:69895598-69895617	None:intergenic	30.0%
GACTTTGAATTCATACCATT+TGG	-	chr6.2:69895775-69895794	MS.gene54254:CDS	30.0%
GAGTAATAGGAATTAAGCAT+AGG	+	chr6.2:69895966-69895985	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	69894383	69895999	69894383	ID=MS.gene54254
chr6.2	mRNA	69894383	69895999	69894383	ID=MS.gene54254.t1;Parent=MS.gene54254
chr6.2	exon	69895103	69895999	69895103	ID=MS.gene54254.t1.exon1;Parent=MS.gene54254.t1
chr6.2	CDS	69895103	69895999	69895103	ID=cds.MS.gene54254.t1;Parent=MS.gene54254.t1
chr6.2	exon	69894383	69894997	69894383	ID=MS.gene54254.t1.exon2;Parent=MS.gene54254.t1
chr6.2	CDS	69894383	69894997	69894383	ID=cds.MS.gene54254.t1;Parent=MS.gene54254.t1

Gene Sequence

>MS.gene54254

ATGGAGCTTCACAACCCTTTTTCTAATATCACCTTCATGGTCTCCTTTCTCTTCCTTTTAGTGCTATTCAAAATAGTTAAAAGGTGGAGTTGTAACAGTTCCCCCAATTTACCACCAGGACCACCAACACTTCCTTTTATAGGAAACCTACATCAGATTATCAACAACTCACTTCCCCATCACTGCTTCAAAAATTTGGCAGCTAAATATGGACCCTTAATGAGTCTAAAATTAGGAGAGGTACCATATGTAATAGTTACTTCACCTGAAATGGCCAAAGAGATTCTGAAAACAAATGACATCACCTTTAGTGATAGGCCAGACTTTCTTATGTACAAAATATTTAGTTACAATGGTACTGACGTTGCTTTCTCTAAATATGGAGAACACTGGAGGCAATTACGAAAGATATGTGTTTTAGAGTTATTAAGTGCAAAGCGTGTCGAATCATTCAAGCCCATTAGAGAAGAAGAGGTGTCAGGCCTTATTAAATCAATATCTGAAAGTGAAGGATCAGTTGTTAATCTCACTCAGAAGATTATTTCAATGACATATGGGATCGTGACACGAGCAACTATTGGGAAAAAGAACAGACACGAACAAGTGTTCATATCAGCAATTAAGGAACTTGGGAGTTTGTTAGGAGTAATGTGTATTGCTGATTTGTATCCTTCTATTAAAATGCTTCAAAGGGTGGTGAGCAAGGAGAAGACCAAACTTGAAAAAATTCATAGAGAAACGGATATAATATTGCAAGACATCATCGATGATCGCAAAATCAATCATAGAGAAGTAAGCACGGATGAAGATATAGTTGATGTTCTTCTCAAGATTCAACAGGAAAATGATCACTCGCAGCATCTCTTGACTGATGACAATATAAAATCAGTCATCCTGGTTAGTCAACAACTTAACACATTTATTTTCAAAATTCGTAGACTGGTTTATAAATTTGCTTGTTTAAAAGTAAGCTTCTACGGATTAATGCTAATCAATTTGCAGGACATGTTCACTGCTGGTACCGAAACATCATCAGATGTTCTGTTATGGGCGATGTCCGAGATGGTAAAGAACCCAAGGGTAATGTATGAAGCCCAAGCTGAGGTAAGAAGAGTGTACGACATAAAGGGGTATGTGGATAACACAGAGTTGCACCAATTGAAATACTTAAAGTCTATCATCAAAGAAACAATGAGGCTACATCCTCCGGCACCATTGTTAATTCCAAGAGAAAGTAGAGAAAGATGCCAAATCAATGGGTATGAGATCCCACCTAAGACAAGAGTCGTTATTAATGCTTGGGCTATTTCAAGAGATCAAAGAAATTGGGTTGAAGCTGAGATTTTTAAACCTGAGAGATTTCTCAATAGCACAATTGATTTCAAAGGAACAGACTTTGAATTCATACCATTTGGAGCTGGAAGGAGAATGTGTCCTGGTATGGCATTTGCCTTACCCAATGTTGAGTTGCCACTTGCTATGTTACTTTATCACTTTGATTGGAAGCTTCCCAATGGAATGAAGAATGAAGAGATAGATATGACTGAAACATTTGGGCTTACCGTAGGAAGAAAACATGACCTATGCTTAATTCCTATTACTCGTCGTCTTGGATAA

Protein sequence

>MS.gene54254.t1

MELHNPFSNITFMVSFLFLLVLFKIVKRWSCNSSPNLPPGPPTLPFIGNLHQIINNSLPHHCFKNLAAKYGPLMSLKLGEVPYVIVTSPEMAKEILKTNDITFSDRPDFLMYKIFSYNGTDVAFSKYGEHWRQLRKICVLELLSAKRVESFKPIREEEVSGLIKSISESEGSVVNLTQKIISMTYGIVTRATIGKKNRHEQVFISAIKELGSLLGVMCIADLYPSIKMLQRVVSKEKTKLEKIHRETDIILQDIIDDRKINHREVSTDEDIVDVLLKIQQENDHSQHLLTDDNIKSVILDMFTAGTETSSDVLLWAMSEMVKNPRVMYEAQAEVRRVYDIKGYVDNTELHQLKYLKSIIKETMRLHPPAPLLIPRESRERCQINGYEIPPKTRVVINAWAISRDQRNWVEAEIFKPERFLNSTIDFKGTDFEFIPFGAGRRMCPGMAFALPNVELPLAMLLYHFDWKLPNGMKNEEIDMTETFGLTVGRKHDLCLIPITRRLG