Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54286.t1 | RHN76792.1 | 98 | 788 | 15 | 1 | 38 | 824 | 239 | 1026 | 0.00E+00 | 1542.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54286.t1 | Q4UM42 | 42.8 | 766 | 418 | 7 | 59 | 824 | 3 | 748 | 7.9e-181 | 635.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54286.t1 | A0A396JHM1 | 98.0 | 788 | 15 | 1 | 38 | 824 | 239 | 1026 | 0.0e+00 | 1542.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene54286 | 0.881811 | 1.76E-70 | -1.69E-46 |
| MS.gene050227 | MS.gene54286 | 0.806507 | 7.95E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene54286 | 0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene54286 | 0.80087 | 1.18E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene54286 | 0.812244 | 4.67E-51 | -1.69E-46 |
| MS.gene051257 | MS.gene54286 | 0.826444 | 2.70E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene54286 | 0.813589 | 2.37E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene54286 | 0.809133 | 2.20E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene54286 | 0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene54286 | 0.811834 | 5.74E-51 | -1.69E-46 |
| MS.gene052600 | MS.gene54286 | 0.863336 | 2.68E-64 | -1.69E-46 |
| MS.gene054701 | MS.gene54286 | 0.845397 | 4.17E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene54286 | 0.894725 | 1.88E-75 | -1.69E-46 |
| MS.gene055808 | MS.gene54286 | 0.828121 | 1.07E-54 | -1.69E-46 |
| MS.gene056091 | MS.gene54286 | 0.803912 | 2.78E-49 | -1.69E-46 |
| MS.gene058757 | MS.gene54286 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene058833 | MS.gene54286 | 0.801794 | 7.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54286.t1 | MTR_0245s0010 | 97.314 | 819 | 21 | 1 | 7 | 824 | 208 | 1026 | 0.0 | 1667 |
| MS.gene54286.t1 | MTR_0245s0010 | 97.314 | 819 | 21 | 1 | 7 | 824 | 208 | 1026 | 0.0 | 1664 |
| MS.gene54286.t1 | MTR_1g009315 | 95.658 | 806 | 34 | 1 | 20 | 824 | 221 | 1026 | 0.0 | 1612 |
| MS.gene54286.t1 | MTR_1g009315 | 95.658 | 806 | 34 | 1 | 20 | 824 | 221 | 1026 | 0.0 | 1610 |
| MS.gene54286.t1 | MTR_1g009570 | 87.732 | 807 | 97 | 1 | 18 | 824 | 116 | 920 | 0.0 | 1480 |
| MS.gene54286.t1 | MTR_0245s0010 | 97.561 | 697 | 17 | 0 | 7 | 703 | 208 | 904 | 0.0 | 1428 |
| MS.gene54286.t1 | MTR_2g066840 | 59.948 | 387 | 150 | 2 | 42 | 427 | 120 | 502 | 1.28e-154 | 461 |
| MS.gene54286.t1 | MTR_0229s0020 | 97.159 | 176 | 4 | 1 | 650 | 824 | 50 | 225 | 1.19e-118 | 359 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54286.t1 | AT4G31210 | 68.072 | 783 | 243 | 4 | 44 | 824 | 457 | 1234 | 0.0 | 1139 |
| MS.gene54286.t1 | AT4G31210 | 68.072 | 783 | 243 | 4 | 44 | 824 | 461 | 1238 | 0.0 | 1139 |
| MS.gene54286.t1 | AT4G31210 | 68.072 | 783 | 243 | 4 | 44 | 824 | 461 | 1238 | 0.0 | 1138 |
| MS.gene54286.t1 | AT5G63920 | 23.510 | 604 | 381 | 18 | 131 | 703 | 118 | 671 | 1.78e-24 | 110 |
| MS.gene54286.t1 | AT2G32000 | 22.484 | 467 | 299 | 15 | 127 | 578 | 107 | 525 | 5.07e-14 | 76.6 |
| MS.gene54286.t1 | AT2G32000 | 22.484 | 467 | 299 | 15 | 127 | 578 | 80 | 498 | 7.32e-14 | 76.3 |
Find 190 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGAGGATTATTTATT+TGG | 0.131805 | 1.1:+10375795 | MS.gene54286:CDS |
| AATAAATTCTGCAGACTTTC+GGG | 0.164617 | 1.1:+10366911 | MS.gene54286:CDS |
| TGAGGTTCTAAATTCATTAA+AGG | 0.210162 | 1.1:+10371507 | MS.gene54286:CDS |
| ACGGGAGATTAATGTGAATT+TGG | 0.228228 | 1.1:+10366569 | MS.gene54286:CDS |
| TTTGGTTCTGGCTACTTTAT+AGG | 0.250431 | 1.1:+10376340 | MS.gene54286:CDS |
| CTATTTAAACCTAGGACTTT+TGG | 0.257007 | 1.1:-10377399 | None:intergenic |
| AAGCACATTAAAAGTATTAA+AGG | 0.269593 | 1.1:+10373519 | MS.gene54286:CDS |
| GGACACGAACGACTCTTGTT+TGG | 0.271516 | 1.1:-10375825 | None:intergenic |
| AAGGCCTCCTTGGAGATTAT+TGG | 0.279369 | 1.1:+10375501 | MS.gene54286:CDS |
| TACATTGCTAAAACATATTA+TGG | 0.281207 | 1.1:+10377324 | MS.gene54286:CDS |
| AATTCAAACCCAAGGAATAT+TGG | 0.295143 | 1.1:+10366745 | MS.gene54286:CDS |
| AAATAAATTCTGCAGACTTT+CGG | 0.296255 | 1.1:+10366910 | MS.gene54286:CDS |
| GTTATTTCAGGTTAAGGATT+TGG | 0.299357 | 1.1:+10377947 | MS.gene54286:intron |
| CGGTCGGTCTAATGGCTTCA+TGG | 0.302889 | 1.1:-10369175 | None:intergenic |
| AGCTCGAGGGTTGAGTTTCC+TGG | 0.309008 | 1.1:+10370044 | MS.gene54286:CDS |
| GCGTATGTCGGTCGGTCTAA+TGG | 0.312067 | 1.1:-10369183 | None:intergenic |
| ACCATACGACCACGAAATTC+TGG | 0.315865 | 1.1:-10373752 | None:intergenic |
| ATGCGGCATTGATGCTCTTC+AGG | 0.323292 | 1.1:-10366116 | None:intergenic |
| GACTTGTCAGCAATGCTGGC+TGG | 0.324808 | 1.1:+10369295 | MS.gene54286:intron |
| TATTGAGATGTTACAACAAC+AGG | 0.327224 | 1.1:+10366461 | MS.gene54286:CDS |
| GACACGAACGACTCTTGTTT+GGG | 0.329100 | 1.1:-10375824 | None:intergenic |
| TGGAAAACCTGTCATATTAA+AGG | 0.334688 | 1.1:+10378556 | MS.gene54286:CDS |
| ATATTTAAAGTAAGTAGATT+TGG | 0.341322 | 1.1:+10376322 | MS.gene54286:CDS |
| TGGATATCGGGCAGTGTTTA+CGG | 0.342179 | 1.1:+10370064 | MS.gene54286:CDS |
| CTTCCTGCTGATTGGCAACT+TGG | 0.346236 | 1.1:-10366669 | None:intergenic |
| CTCCATAGTCCAATATTCCT+TGG | 0.347393 | 1.1:-10366754 | None:intergenic |
| CACATTACCTTTCAATGATC+AGG | 0.351890 | 1.1:-10367719 | None:intergenic |
| TCAACTTGTTTGAATTGAAA+TGG | 0.352592 | 1.1:-10366839 | None:intergenic |
| TGTTGACTTGTCAGCAATGC+TGG | 0.354414 | 1.1:+10369291 | MS.gene54286:intron |
| GATGCTAACATGGTTTGTTC+AGG | 0.355562 | 1.1:+10365765 | None:intergenic |
| AATGATCAGGGAGCGAATAT+TGG | 0.358648 | 1.1:-10367706 | None:intergenic |
| AGGGCCCTTGATTATTTGAT+TGG | 0.362453 | 1.1:+10366612 | MS.gene54286:CDS |
| TGCTGAGAAATTCAATTTGT+TGG | 0.366733 | 1.1:-10367012 | None:intergenic |
| AAAGTAAGTAGATTTGGTTC+TGG | 0.367955 | 1.1:+10376328 | MS.gene54286:CDS |
| ACTTGTCAGCAATGCTGGCT+GGG | 0.374544 | 1.1:+10369296 | MS.gene54286:intron |
| TCCATAGTCCAATATTCCTT+GGG | 0.384626 | 1.1:-10366753 | None:intergenic |
| AGAGACTTGGCTTCAAGGTC+TGG | 0.385309 | 1.1:+10366030 | MS.gene54286:CDS |
| TGAAGTGTTGATGTTATATA+AGG | 0.386077 | 1.1:-10366978 | None:intergenic |
| AAACTCTTGCCAGGTTGATC+TGG | 0.388672 | 1.1:+10365861 | MS.gene54286:CDS |
| TGAAGCTATACACACTTATA+TGG | 0.391294 | 1.1:+10369338 | MS.gene54286:CDS |
| ATTGAACTCTTCCTGCTGAT+TGG | 0.393543 | 1.1:-10366677 | None:intergenic |
| TCCAAGGAGGCCTTTCCATT+TGG | 0.393684 | 1.1:-10375492 | None:intergenic |
| CTCAAAAGCTAGATCATGAT+TGG | 0.395894 | 1.1:-10371488 | None:intergenic |
| TTAACATTTCGCCATTACTT+TGG | 0.396010 | 1.1:+10366637 | MS.gene54286:CDS |
| TTAAGAAACTTGAAGAGCTT+GGG | 0.399131 | 1.1:+10373473 | MS.gene54286:CDS |
| GGGTTGAGTTTCCTGGATAT+CGG | 0.401164 | 1.1:+10370051 | MS.gene54286:CDS |
| TTTAAATAGTTCAAATGAAA+AGG | 0.402303 | 1.1:+10377413 | MS.gene54286:CDS |
| CAGCTTGATAATGTTTCTGC+TGG | 0.405801 | 1.1:+10375464 | MS.gene54286:intron |
| CAACTTGTTTGAATTGAAAT+GGG | 0.413609 | 1.1:-10366838 | None:intergenic |
| AATGTGCTTGCATACGTTGA+AGG | 0.415183 | 1.1:-10373505 | None:intergenic |
| TCTAATATGTGATAGAGAAC+TGG | 0.418028 | 1.1:+10366713 | MS.gene54286:CDS |
| ACCCAAGGAATATTGGACTA+TGG | 0.419244 | 1.1:+10366752 | MS.gene54286:CDS |
| GAAGCCGCTAGGGAAATTTA+CGG | 0.422062 | 1.1:+10365885 | MS.gene54286:CDS |
| TACAATAGTACCTTAGGAAC+AGG | 0.422691 | 1.1:-10378623 | None:intergenic |
| GTTAAGAAACTTGAAGAGCT+TGG | 0.426018 | 1.1:+10373472 | MS.gene54286:CDS |
| AAACTTGAAGAGCTTGGGAT+TGG | 0.430510 | 1.1:+10373478 | MS.gene54286:CDS |
| AGCAAGAAATGTTAAGTCCT+TGG | 0.431815 | 1.1:-10366808 | None:intergenic |
| GGGAAGTTCCCTCATCTGCC+TGG | 0.436762 | 1.1:+10366088 | MS.gene54286:CDS |
| ACCAAATGGAAAGGCCTCCT+TGG | 0.442477 | 1.1:+10375491 | MS.gene54286:CDS |
| TATAAGTGTGTATAGCTTCA+AGG | 0.443525 | 1.1:-10369335 | None:intergenic |
| ATGTAAGAGACTTGGCTTCA+AGG | 0.449893 | 1.1:+10366025 | MS.gene54286:CDS |
| GTAACGCAAGTGCTTCTTCA+AGG | 0.452747 | 1.1:-10377980 | None:intergenic |
| GCCAAACAAAACTATGATAG+AGG | 0.460120 | 1.1:+10377374 | MS.gene54286:CDS |
| ATAGCCTCTCCCTCACGATC+AGG | 0.466381 | 1.1:-10366426 | None:intergenic |
| TTTGCGACCTTTAATATGAC+AGG | 0.467674 | 1.1:-10378563 | None:intergenic |
| TAGGACATTGTCACTGAAGC+TGG | 0.474217 | 1.1:+10371442 | MS.gene54286:intron |
| ATATTAAAGGTCGCAAAGCT+TGG | 0.474359 | 1.1:+10378569 | MS.gene54286:CDS |
| GGTTGAGTTTCCTGGATATC+GGG | 0.479250 | 1.1:+10370052 | MS.gene54286:CDS |
| TAAATCCAATCAAATAATCA+AGG | 0.480541 | 1.1:-10366617 | None:intergenic |
| TGTTTGAATTGAAATGGGTT+AGG | 0.483236 | 1.1:-10366833 | None:intergenic |
| CATTTGAACTATTTAAACCT+AGG | 0.488092 | 1.1:-10377407 | None:intergenic |
| AACGTGGTGGTGGTTGTGTA+TGG | 0.491520 | 1.1:-10372353 | None:intergenic |
| GACAATTGCTCCTGTTCCTA+AGG | 0.493943 | 1.1:+10378613 | MS.gene54286:CDS |
| GTAAACACTGCCCGATATCC+AGG | 0.497529 | 1.1:-10370062 | None:intergenic |
| TGGTTCATGCTTACCTTGCA+CGG | 0.497862 | 1.1:+10366589 | MS.gene54286:CDS |
| CTGATCAGTCTATTGTGTTA+CGG | 0.500748 | 1.1:+10370015 | MS.gene54286:CDS |
| TTTGACTTGTTTCAGTTGTA+CGG | 0.503033 | 1.1:+10376288 | MS.gene54286:intron |
| TTACTTCTGGTGAGGAGGCA+AGG | 0.507160 | 1.1:+10366874 | MS.gene54286:CDS |
| GTTATCTCTCCAGAATTTCG+TGG | 0.507474 | 1.1:+10373743 | MS.gene54286:CDS |
| ACAAGAGTCGTTCGTGTCCA+AGG | 0.509038 | 1.1:+10375829 | MS.gene54286:CDS |
| TCATGCTTACCTTGCACGGA+GGG | 0.510226 | 1.1:+10366593 | MS.gene54286:CDS |
| GGTCGGTCTAATGGCTTCAT+GGG | 0.514067 | 1.1:-10369174 | None:intergenic |
| GCATCAATGCCGCATTGAGC+GGG | 0.516038 | 1.1:+10366124 | MS.gene54286:CDS |
| AAGAACAGTTTCTTGTCAGA+TGG | 0.518261 | 1.1:+10369363 | MS.gene54286:CDS |
| ACATTTCGCCATTACTTTGG+AGG | 0.518323 | 1.1:+10366640 | MS.gene54286:CDS |
| TTTCTGCTGGAACAACCAAA+TGG | 0.518694 | 1.1:+10375477 | MS.gene54286:CDS |
| CTTGTCAGCAATGCTGGCTG+GGG | 0.519883 | 1.1:+10369297 | MS.gene54286:intron |
| CTACAATTTCACTGCTGACA+TGG | 0.519964 | 1.1:+10374840 | MS.gene54286:CDS |
| CTATGGTCATGTAAGAGACT+TGG | 0.521211 | 1.1:+10366017 | MS.gene54286:CDS |
| TCCAGAATTTCGTGGTCGTA+TGG | 0.521368 | 1.1:+10373751 | MS.gene54286:CDS |
| ACGTTACTCTGAGGCATCAC+TGG | 0.521740 | 1.1:+10372371 | MS.gene54286:CDS |
| AAGCCGCTAGGGAAATTTAC+GGG | 0.523429 | 1.1:+10365886 | MS.gene54286:CDS |
| ATAACATACATCAGAACTGA+TGG | 0.523438 | 1.1:+10367262 | MS.gene54286:CDS |
| CTTGGCTATTCTATTAGACA+TGG | 0.524067 | 1.1:+10378587 | MS.gene54286:CDS |
| GAGGGAGTTGAACTGACTAA+TGG | 0.524427 | 1.1:+10367223 | MS.gene54286:CDS |
| ATAGAGGAACCAAAAGTCCT+AGG | 0.525619 | 1.1:+10377390 | MS.gene54286:CDS |
| GATGCTCTTCAGGTGAGTCC+AGG | 0.531084 | 1.1:-10366106 | None:intergenic |
| TATGAAGTCTTGCCAAGCTA+TGG | 0.531757 | 1.1:+10366000 | MS.gene54286:CDS |
| TACTTCTGGTGAGGAGGCAA+GGG | 0.534533 | 1.1:+10366875 | MS.gene54286:CDS |
| GAAGGAGGTAAACTCTTGCC+AGG | 0.535895 | 1.1:+10365852 | MS.gene54286:CDS |
| AGTTGAACATAGATTCCATA+AGG | 0.536419 | 1.1:-10377550 | None:intergenic |
| CGGATAGTTCTGCTTCTACA+AGG | 0.536894 | 1.1:+10365821 | MS.gene54286:CDS |
| TTCTGATGTTCATATTCACC+AGG | 0.540572 | 1.1:+10375553 | MS.gene54286:CDS |
| AAGGTTATTCAGAGATACCT+TGG | 0.542438 | 1.1:+10365970 | MS.gene54286:CDS |
| GATGTTATATAAGGTGTTGG+AGG | 0.543026 | 1.1:-10366969 | None:intergenic |
| GTTGATGTTATATAAGGTGT+TGG | 0.543114 | 1.1:-10366972 | None:intergenic |
| AGATCCTGATCGTGAGGGAG+AGG | 0.545114 | 1.1:+10366422 | MS.gene54286:CDS |
| CTGACTAATGGTATATCAGC+GGG | 0.546556 | 1.1:+10367235 | MS.gene54286:CDS |
| AACTGCTTTGCAAACACCAC+GGG | 0.546911 | 1.1:+10366551 | MS.gene54286:CDS |
| GAGAAACGTACCAATGTCAC+TGG | 0.550451 | 1.1:-10378011 | None:intergenic |
| TATGTTCAACTCGGAGAAGA+CGG | 0.550733 | 1.1:+10377562 | MS.gene54286:CDS |
| TTCCAGATACAACTTGATGT+TGG | 0.550837 | 1.1:+10369987 | MS.gene54286:intron |
| TTCGGTTACTTCTGGTGAGG+AGG | 0.551156 | 1.1:+10366869 | MS.gene54286:CDS |
| GGTTGTGGAGTCTGTTACAA+AGG | 0.551768 | 1.1:+10365945 | MS.gene54286:CDS |
| CTCAGCAAGTCACACAATGA+AGG | 0.552323 | 1.1:+10367028 | MS.gene54286:CDS |
| TGTTACGGTCTGCTAGCTCG+AGG | 0.553663 | 1.1:+10370030 | MS.gene54286:CDS |
| TTACCAAGTTGCCAATCAGC+AGG | 0.554681 | 1.1:+10366666 | MS.gene54286:CDS |
| TTTAAGGATTGATGCTAACA+TGG | 0.555412 | 1.1:+10365755 | None:intergenic |
| GCCTCAGAGTAACGTGGTGG+TGG | 0.555980 | 1.1:-10372363 | None:intergenic |
| GGGAAAGTCTGTGATGGTTG+TGG | 0.557578 | 1.1:+10365930 | MS.gene54286:CDS |
| GGAACAAGCTGTTCTTGAGA+AGG | 0.557784 | 1.1:+10369384 | MS.gene54286:CDS |
| CACCATACTAAAATCATCGT+CGG | 0.558958 | 1.1:-10366064 | None:intergenic |
| AGCATCAATGCCGCATTGAG+CGG | 0.560169 | 1.1:+10366123 | MS.gene54286:CDS |
| ATATTATGGTGACGAGGAGG+AGG | 0.562737 | 1.1:+10377338 | MS.gene54286:CDS |
| ATGTTCAACTCGGAGAAGAC+GGG | 0.562952 | 1.1:+10377563 | MS.gene54286:CDS |
| ACCATACTAAAATCATCGTC+GGG | 0.564514 | 1.1:-10366063 | None:intergenic |
| TACCACTTCAAAAGAAACTA+CGG | 0.565894 | 1.1:+10365801 | MS.gene54286:CDS |
| TTTCCCATGGGTGGATACAA+TGG | 0.565995 | 1.1:-10365913 | None:intergenic |
| AATCAAGGGCCCTCCGTGCA+AGG | 0.566678 | 1.1:-10366602 | None:intergenic |
| GTTACGGTCTGCTAGCTCGA+GGG | 0.566817 | 1.1:+10370031 | MS.gene54286:CDS |
| GTTGATCTGGAGAAGCCGCT+AGG | 0.568046 | 1.1:+10365874 | MS.gene54286:CDS |
| AAAACCATTGTATCCACCCA+TGG | 0.570983 | 1.1:+10365909 | MS.gene54286:CDS |
| AGGTGAGTCCAGGCAGATGA+GGG | 0.574847 | 1.1:-10366096 | None:intergenic |
| TCTCTTACATGACCATAGCT+TGG | 0.576525 | 1.1:-10366012 | None:intergenic |
| CAGGTGAGTCCAGGCAGATG+AGG | 0.577157 | 1.1:-10366097 | None:intergenic |
| TGCATCAGATCCTGATCGTG+AGG | 0.579247 | 1.1:+10366416 | MS.gene54286:CDS |
| AATTGATCAATTCAAACCCA+AGG | 0.581974 | 1.1:+10366737 | MS.gene54286:CDS |
| ATCACAGACTTTCCCATGGG+TGG | 0.582611 | 1.1:-10365922 | None:intergenic |
| GGTAACTTGCGTATGTCGGT+CGG | 0.582917 | 1.1:-10369191 | None:intergenic |
| ACATTACCTTTCAATGATCA+GGG | 0.585296 | 1.1:-10367718 | None:intergenic |
| TTCGCTCCCTGATCATTGAA+AGG | 0.587418 | 1.1:+10367712 | MS.gene54286:CDS |
| GGTAACTTCCTCCAAAGTAA+TGG | 0.587971 | 1.1:-10366648 | None:intergenic |
| TTGATCTGGAGAAGCCGCTA+GGG | 0.590160 | 1.1:+10365875 | MS.gene54286:CDS |
| GAATATGAACATCAGAAGTA+CGG | 0.591032 | 1.1:-10375547 | None:intergenic |
| ACTTGTTTCAGTTGTACGGA+AGG | 0.591859 | 1.1:+10376292 | MS.gene54286:intron |
| AAATCCAATCAAATAATCAA+GGG | 0.593996 | 1.1:-10366616 | None:intergenic |
| CGCAAGTGCTTCTTCAAGGG+TGG | 0.594856 | 1.1:-10377976 | None:intergenic |
| GGAGTCTGTTACAAAGGCAA+AGG | 0.595186 | 1.1:+10365951 | MS.gene54286:CDS |
| CACGATCAGGATCTGATGCA+AGG | 0.596493 | 1.1:-10366413 | None:intergenic |
| ACATGGTAACTTGCGTATGT+CGG | 0.597742 | 1.1:-10369195 | None:intergenic |
| GTTACATCTTGTTCAAACTG+AGG | 0.600568 | 1.1:+10372320 | MS.gene54286:CDS |
| GCTGGAACAACCAAATGGAA+AGG | 0.600569 | 1.1:+10375482 | MS.gene54286:CDS |
| TAACGCAAGTGCTTCTTCAA+GGG | 0.605084 | 1.1:-10377979 | None:intergenic |
| CTGCTCTTTGATACTAAACA+TGG | 0.605743 | 1.1:-10366778 | None:intergenic |
| ACCGCGTCCAATAATCTCCA+AGG | 0.610349 | 1.1:-10375508 | None:intergenic |
| AACCATCACAGACTTTCCCA+TGG | 0.612385 | 1.1:-10365926 | None:intergenic |
| GTGAGGGAGAGGCTATCGCT+TGG | 0.621022 | 1.1:+10366433 | MS.gene54286:CDS |
| TCCTTGGAGATTATTGGACG+CGG | 0.624643 | 1.1:+10375507 | MS.gene54286:CDS |
| ACTACAATATCCAGTGACAT+TGG | 0.626234 | 1.1:+10378001 | MS.gene54286:CDS |
| CACTGCTGACATGGAAACTG+AGG | 0.627068 | 1.1:+10374849 | MS.gene54286:CDS |
| ACCATCACAGACTTTCCCAT+GGG | 0.631567 | 1.1:-10365925 | None:intergenic |
| AAACCATTGTATCCACCCAT+GGG | 0.635514 | 1.1:+10365910 | MS.gene54286:CDS |
| TAGGGTAAGCATCCTGACGA+TGG | 0.648694 | 1.1:+10378536 | MS.gene54286:intron |
| TATGGAATCTATGTTCAACT+CGG | 0.651482 | 1.1:+10377553 | MS.gene54286:CDS |
| GCGGCTTCTCCAGATCAACC+TGG | 0.653095 | 1.1:-10365870 | None:intergenic |
| GCATCAGATCCTGATCGTGA+GGG | 0.655516 | 1.1:+10366417 | MS.gene54286:CDS |
| AAACTGCTTTGCAAACACCA+CGG | 0.658793 | 1.1:+10366550 | MS.gene54286:CDS |
| AACATATTATGGTGACGAGG+AGG | 0.659545 | 1.1:+10377335 | MS.gene54286:CDS |
| CAAGGAATATTGGACTATGG+AGG | 0.662106 | 1.1:+10366755 | MS.gene54286:CDS |
| TATAATACTCACTTGCACCT+CGG | 0.663273 | 1.1:-10376376 | None:intergenic |
| TTTCCCGTAAATTTCCCTAG+CGG | 0.665996 | 1.1:-10365889 | None:intergenic |
| GAAATTCTGGAGAGATAACA+CGG | 0.666318 | 1.1:-10373739 | None:intergenic |
| ACCCATGGGAAAGTCTGTGA+TGG | 0.670381 | 1.1:+10365924 | MS.gene54286:CDS |
| GGACGAGACAGAGACAGTGA+CGG | 0.671568 | 1.1:+10371463 | MS.gene54286:CDS |
| AAATTCACATTAATCTCCCG+TGG | 0.671874 | 1.1:-10366567 | None:intergenic |
| TTCATGCTTACCTTGCACGG+AGG | 0.673339 | 1.1:+10366592 | MS.gene54286:CDS |
| ACTGACTAATGGTATATCAG+CGG | 0.682118 | 1.1:+10367234 | MS.gene54286:CDS |
| CAAAGAGCAGAGATTAACCA+AGG | 0.685631 | 1.1:+10366791 | MS.gene54286:CDS |
| ACCACCACCACGTTACTCTG+AGG | 0.689454 | 1.1:+10372362 | MS.gene54286:CDS |
| TCAACTCGGAGAAGACGGGA+AGG | 0.691500 | 1.1:+10377567 | MS.gene54286:CDS |
| ATTGAGATGTTACAACAACA+GGG | 0.697062 | 1.1:+10366462 | MS.gene54286:CDS |
| TAGGCTGTGATCAACATCCG+AGG | 0.711823 | 1.1:+10376359 | MS.gene54286:CDS |
| CTTGCTCAGAAACTCTACGA+GGG | 0.714343 | 1.1:+10367205 | MS.gene54286:CDS |
| GCGTCCAATAATCTCCAAGG+AGG | 0.736331 | 1.1:-10375505 | None:intergenic |
| AGACTTCATACATATCACCA+AGG | 0.741726 | 1.1:-10365987 | None:intergenic |
| TAAAACATATTATGGTGACG+AGG | 0.743355 | 1.1:+10377332 | MS.gene54286:CDS |
| AGTGATGCCTCAGAGTAACG+TGG | 0.746122 | 1.1:-10372369 | None:intergenic |
| GCTTGCTCAGAAACTCTACG+AGG | 0.764842 | 1.1:+10367204 | MS.gene54286:intron |
| GAGAATGTACCCGCTCAATG+CGG | 0.768402 | 1.1:-10366133 | None:intergenic |
| GATGCCTCAGAGTAACGTGG+TGG | 0.781483 | 1.1:-10372366 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 10365766 | 10378634 | 10365766 | ID=MS.gene54286 |
| chr1.1 | mRNA | 10365766 | 10378634 | 10365766 | ID=MS.gene54286.t1;Parent=MS.gene54286 |
| chr1.1 | exon | 10365766 | 10366145 | 10365766 | ID=MS.gene54286.t1.exon1;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10365766 | 10366145 | 10365766 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10366398 | 10367049 | 10366398 | ID=MS.gene54286.t1.exon2;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10366398 | 10367049 | 10366398 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10367205 | 10367291 | 10367205 | ID=MS.gene54286.t1.exon3;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10367205 | 10367291 | 10367205 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10367687 | 10367733 | 10367687 | ID=MS.gene54286.t1.exon4;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10367687 | 10367733 | 10367687 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10369106 | 10369215 | 10369106 | ID=MS.gene54286.t1.exon5;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10369106 | 10369215 | 10369106 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10369305 | 10369405 | 10369305 | ID=MS.gene54286.t1.exon6;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10369305 | 10369405 | 10369305 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10369993 | 10370085 | 10369993 | ID=MS.gene54286.t1.exon7;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10369993 | 10370085 | 10369993 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10371445 | 10371528 | 10371445 | ID=MS.gene54286.t1.exon8;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10371445 | 10371528 | 10371445 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10372309 | 10372392 | 10372309 | ID=MS.gene54286.t1.exon9;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10372309 | 10372392 | 10372309 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10373472 | 10373540 | 10373472 | ID=MS.gene54286.t1.exon10;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10373472 | 10373540 | 10373472 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10373713 | 10373772 | 10373713 | ID=MS.gene54286.t1.exon11;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10373713 | 10373772 | 10373713 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10374799 | 10374870 | 10374799 | ID=MS.gene54286.t1.exon12;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10374799 | 10374870 | 10374799 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10375467 | 10375574 | 10375467 | ID=MS.gene54286.t1.exon13;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10375467 | 10375574 | 10375467 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10375774 | 10375850 | 10375774 | ID=MS.gene54286.t1.exon14;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10375774 | 10375850 | 10375774 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10376303 | 10376386 | 10376303 | ID=MS.gene54286.t1.exon15;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10376303 | 10376386 | 10376303 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10377323 | 10377434 | 10377323 | ID=MS.gene54286.t1.exon16;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10377323 | 10377434 | 10377323 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10377532 | 10377621 | 10377532 | ID=MS.gene54286.t1.exon17;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10377532 | 10377621 | 10377532 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10377957 | 10378022 | 10377957 | ID=MS.gene54286.t1.exon18;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10377957 | 10378022 | 10377957 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| chr1.1 | exon | 10378539 | 10378634 | 10378539 | ID=MS.gene54286.t1.exon19;Parent=MS.gene54286.t1 |
| chr1.1 | CDS | 10378539 | 10378634 | 10378539 | ID=cds.MS.gene54286.t1;Parent=MS.gene54286.t1 |
| Gene Sequence |
| Protein sequence |
