AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54619

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54619.t1 MTR_5g013420 96.786 1089 34 1 1 1088 1 1089 0.0 2162
MS.gene54619.t1 MTR_5g013420 96.694 1089 35 1 1 1088 1 1089 0.0 2159
MS.gene54619.t1 MTR_4g010830 69.658 1081 212 12 23 1088 1 980 0.0 1401
MS.gene54619.t1 MTR_4g010550 77.374 495 76 6 599 1088 1 464 0.0 754
MS.gene54619.t1 MTR_7g445710 43.446 534 214 11 576 1088 77 543 2.95e-125 394
MS.gene54619.t1 MTR_8g042750 39.761 586 305 14 532 1085 116 685 4.25e-125 399
MS.gene54619.t1 MTR_3g011440 41.111 540 296 14 567 1087 127 663 1.12e-122 391
MS.gene54619.t1 MTR_7g084090 42.553 517 261 13 603 1088 246 757 2.67e-118 382
MS.gene54619.t1 MTR_7g450730 42.015 526 210 10 570 1088 68 505 5.99e-118 373
MS.gene54619.t1 MTR_7g088370 39.962 523 279 17 580 1087 202 704 4.83e-115 372
MS.gene54619.t1 MTR_8g070070 42.174 460 244 8 617 1057 299 755 5.75e-115 374
MS.gene54619.t1 MTR_6g061270 41.811 519 265 12 603 1088 180 694 8.59e-115 371
MS.gene54619.t1 MTR_8g070075 41.342 462 249 8 615 1057 290 748 2.28e-112 367
MS.gene54619.t1 MTR_1g048950 41.373 539 257 11 576 1088 28 533 1.44e-111 358
MS.gene54619.t1 MTR_1g035420 39.000 500 283 9 581 1064 158 651 4.14e-110 358
MS.gene54619.t1 MTR_7g445530 42.262 504 203 11 576 1058 77 513 4.92e-110 352
MS.gene54619.t1 MTR_6g061200 41.165 498 249 10 611 1088 192 665 1.37e-109 356
MS.gene54619.t1 MTR_8g071030 41.048 458 250 7 618 1057 280 735 9.18e-108 354
MS.gene54619.t1 MTR_6g044690 38.889 468 247 12 615 1057 109 562 2.28e-94 312
MS.gene54619.t1 MTR_1g035400 37.791 516 276 17 581 1064 68 570 1.06e-90 303
MS.gene54619.t1 MTR_0376s0030 36.454 502 262 15 585 1057 87 560 1.33e-87 294
MS.gene54619.t1 MTR_6g043960 34.510 510 267 14 584 1057 2 480 1.55e-77 263
MS.gene54619.t1 MTR_7g084090 41.085 387 203 11 603 967 246 629 3.13e-77 268
MS.gene54619.t1 MTR_2g054460 33.202 506 257 13 581 1057 9 462 3.54e-70 242
MS.gene54619.t1 MTR_7g052480 42.042 333 165 9 774 1088 234 556 3.73e-67 236
MS.gene54619.t1 MTR_5g018850 34.954 329 150 10 801 1088 1202 1507 3.49e-44 175
MS.gene54619.t1 MTR_7g445600 52.055 146 33 1 913 1058 248 356 2.90e-42 159
MS.gene54619.t1 MTR_7g445600 40.606 165 81 3 576 740 73 220 3.84e-29 120
MS.gene54619.t1 MTR_8g078490 40.271 221 103 7 874 1088 1056 1253 2.94e-41 166
MS.gene54619.t1 MTR_4g132610 38.182 220 107 5 875 1088 851 1047 4.44e-37 152
MS.gene54619.t1 MTR_8g078505 33.871 310 149 12 806 1083 248 533 5.22e-36 144
MS.gene54619.t1 MTR_1g069570 30.606 330 159 11 808 1083 428 741 1.21e-31 133
MS.gene54619.t1 MTR_1g080340 28.286 350 162 9 801 1086 260 584 3.07e-30 128
MS.gene54619.t1 MTR_7g445810 38.191 199 94 6 576 766 90 267 6.37e-30 120
MS.gene54619.t1 MTR_7g098390 27.108 332 162 9 810 1083 388 697 4.70e-27 119
MS.gene54619.t1 MTR_1g069570 29.389 262 119 9 808 1016 428 676 2.31e-22 103
MS.gene54619.t1 MTR_0071s0100 30.451 266 114 12 831 1087 145 348 3.74e-20 94.4
MS.gene54619.t1 MTR_1g098370 33.333 195 92 8 893 1084 75 234 1.33e-18 90.9
MS.gene54619.t1 MTR_1g098000 32.821 195 93 8 893 1084 72 231 3.07e-18 89.7
MS.gene54619.t1 MTR_6g059310 30.303 198 104 6 890 1087 87 250 3.74e-18 87.8
MS.gene54619.t1 MTR_6g059310 30.303 198 104 6 890 1087 87 250 4.97e-18 87.4
MS.gene54619.t1 MTR_3g088625 34.694 196 84 7 898 1087 1307 1464 6.88e-18 90.5
MS.gene54619.t1 MTR_3g088625 34.694 196 84 7 898 1087 1201 1358 7.04e-18 90.5
MS.gene54619.t1 MTR_6g027690 29.461 241 126 10 853 1087 217 419 6.42e-15 79.0
MS.gene54619.t1 MTR_5g098680 33.333 153 91 3 643 787 267 416 2.13e-14 78.2
MS.gene54619.t1 MTR_8g027725 33.333 156 66 5 914 1063 791 914 1.56e-12 72.4
MS.gene54619.t1 MTR_8g027725 33.333 156 66 5 914 1063 806 929 1.57e-12 72.4
MS.gene54619.t1 MTR_1g064770 43.077 65 36 1 888 951 28 92 5.78e-12 63.2
MS.gene54619.t1 MTR_7g117355 32.051 156 68 5 914 1063 821 944 2.09e-11 68.9
MS.gene54619.t1 MTR_6g044000 37.500 104 50 2 584 672 2 105 6.41e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54619.t1 AT2G22740 64.054 523 171 8 581 1088 270 790 0.0 665
MS.gene54619.t1 AT2G22740 64.054 523 171 8 581 1088 270 790 0.0 665
MS.gene54619.t1 AT2G35160 61.047 516 167 5 580 1088 306 794 0.0 652
MS.gene54619.t1 AT2G35160 61.047 516 167 5 580 1088 306 794 0.0 652
MS.gene54619.t1 AT2G35160 61.047 516 167 5 580 1088 306 794 0.0 652
MS.gene54619.t1 AT2G35160 61.047 516 167 5 580 1088 270 758 0.0 652
MS.gene54619.t1 AT2G35160 61.047 516 167 5 580 1088 306 794 0.0 652
MS.gene54619.t1 AT5G04940 41.459 521 285 14 581 1087 155 669 9.85e-120 384
MS.gene54619.t1 AT5G04940 41.459 521 285 14 581 1087 155 669 9.85e-120 384
MS.gene54619.t1 AT5G13960 40.255 549 283 13 570 1088 91 624 9.69e-117 374
MS.gene54619.t1 AT5G13960 42.650 483 245 10 635 1088 11 490 8.51e-116 367
MS.gene54619.t1 AT1G73100 39.439 535 294 14 569 1087 148 668 1.88e-113 367
MS.gene54619.t1 AT4G13460 38.710 527 296 11 555 1062 123 641 2.33e-109 355
MS.gene54619.t1 AT4G13460 38.710 527 296 11 555 1062 123 641 2.33e-109 355
MS.gene54619.t1 AT2G33290 37.278 507 300 7 566 1057 134 637 3.29e-105 344
MS.gene54619.t1 AT2G33290 37.278 507 300 7 566 1057 134 637 3.29e-105 344
MS.gene54619.t1 AT2G33290 37.278 507 300 7 566 1057 134 637 3.29e-105 344
MS.gene54619.t1 AT2G33290 37.278 507 300 7 566 1057 134 637 3.29e-105 344
MS.gene54619.t1 AT1G17770 35.609 542 310 14 569 1087 167 692 3.55e-92 310
MS.gene54619.t1 AT2G24740 37.873 536 285 18 569 1087 250 754 5.01e-89 303
MS.gene54619.t1 AT5G47150 47.685 216 110 3 577 790 114 328 4.52e-52 186
MS.gene54619.t1 AT5G47160 33.691 466 237 17 328 782 3 407 7.24e-51 186
MS.gene54619.t1 AT5G47160 33.691 466 237 17 328 782 3 407 7.24e-51 186
MS.gene54619.t1 AT5G47160 33.691 466 237 17 328 782 3 407 7.24e-51 186
MS.gene54619.t1 AT2G23740 31.915 329 169 11 794 1087 1073 1381 8.22e-36 148
MS.gene54619.t1 AT2G23740 31.915 329 169 11 794 1087 1073 1381 8.22e-36 148
MS.gene54619.t1 AT2G23740 31.915 329 169 11 794 1087 1073 1381 8.22e-36 148
MS.gene54619.t1 AT2G23740 31.915 329 169 11 794 1087 1066 1374 8.84e-36 148
MS.gene54619.t1 AT3G04380 28.035 346 167 11 801 1086 137 460 1.41e-28 121
MS.gene54619.t1 AT3G04380 28.035 346 167 11 801 1086 110 433 1.47e-28 121
MS.gene54619.t1 AT3G04380 28.035 346 167 11 801 1086 121 444 1.52e-28 121
MS.gene54619.t1 AT3G04380 28.035 346 167 11 801 1086 137 460 1.81e-28 121
MS.gene54619.t1 AT3G04380 28.035 346 167 11 801 1086 110 433 2.04e-28 120
MS.gene54619.t1 AT3G04380 28.035 346 167 11 801 1086 94 417 2.08e-28 120
MS.gene54619.t1 AT2G05900 34.975 203 121 7 656 848 1 202 7.00e-28 115
MS.gene54619.t1 AT2G05900 39.286 84 43 2 1004 1087 236 311 4.61e-11 65.9
MS.gene54619.t1 AT2G23740 32.171 258 124 9 794 1016 1073 1314 1.97e-26 118
MS.gene54619.t1 AT2G23740 32.171 258 124 9 794 1016 1073 1314 1.97e-26 118
MS.gene54619.t1 AT1G04050 27.246 334 169 12 808 1086 407 721 1.04e-25 114
MS.gene54619.t1 AT1G04050 27.246 334 169 12 808 1086 407 721 1.04e-25 114
MS.gene54619.t1 AT1G04050 33.166 199 111 5 891 1086 438 617 2.04e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 393 704 2.50e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 393 704 2.50e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 393 704 2.50e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 393 704 2.50e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 373 684 2.52e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 373 684 2.52e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 373 684 2.52e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 373 684 2.52e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 396 707 2.57e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 396 707 2.57e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 416 727 2.79e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 416 727 2.79e-25 113
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 304 615 4.94e-25 112
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 324 635 5.84e-25 112
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 324 635 5.84e-25 112
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 324 635 5.84e-25 112
MS.gene54619.t1 AT5G43990 27.410 332 168 11 808 1086 324 635 5.84e-25 112
MS.gene54619.t1 AT3G03750 30.800 250 126 8 847 1087 138 349 1.65e-21 98.2
MS.gene54619.t1 AT1G76710 33.838 198 93 7 893 1087 66 228 7.54e-19 91.7
MS.gene54619.t1 AT1G76710 33.838 198 93 7 893 1087 66 228 7.54e-19 91.7
MS.gene54619.t1 AT4G30860 31.047 277 126 11 817 1087 247 464 8.71e-19 91.7
MS.gene54619.t1 AT1G76710 33.838 198 93 7 893 1087 66 228 9.40e-19 91.7
MS.gene54619.t1 AT1G76710 33.838 198 93 7 893 1087 66 228 1.12e-18 91.3
MS.gene54619.t1 AT1G77300 33.158 190 95 7 898 1087 1009 1166 3.73e-17 87.8
MS.gene54619.t1 AT1G77300 33.158 190 95 7 898 1087 1009 1166 5.48e-17 87.4
MS.gene54619.t1 AT3G59960 31.395 172 84 6 916 1087 112 249 4.44e-15 77.8
MS.gene54619.t1 AT3G59960 31.395 172 84 6 916 1087 112 249 4.44e-15 77.8
MS.gene54619.t1 AT3G59960 31.395 172 84 6 916 1087 112 249 4.44e-15 77.8
MS.gene54619.t1 AT1G57820 33.117 154 91 4 643 787 277 427 1.70e-14 78.6
MS.gene54619.t1 AT1G57820 33.117 154 91 4 643 787 277 427 1.70e-14 78.6
MS.gene54619.t1 AT1G57820 32.450 151 93 4 643 787 277 424 1.00e-13 76.3
MS.gene54619.t1 AT3G59960 31.395 172 84 6 916 1087 112 249 1.07e-13 73.9
MS.gene54619.t1 AT2G44150 29.070 172 88 6 916 1087 117 254 2.76e-13 73.2
MS.gene54619.t1 AT3G61740 35.032 157 63 6 914 1063 838 962 3.39e-13 74.7
MS.gene54619.t1 AT3G03750 27.600 250 118 10 847 1087 138 333 3.78e-13 72.4
MS.gene54619.t1 AT3G61740 35.032 157 63 6 914 1063 874 998 4.08e-13 74.7
MS.gene54619.t1 AT4G27910 31.098 164 70 6 926 1083 896 1022 3.31e-11 68.2

Find 267 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATGTTGGTTTAAATT+TGG 0.118788 5.3:-6603353 None:intergenic
TCAATTGGATGTGCCTATTT+TGG 0.119192 5.3:+6602556 MS.gene54619:CDS
TCAAGTGGATGGGGATATTT+TGG 0.160554 5.3:+6602424 MS.gene54619:CDS
GAACATTCTGAAGAAGAATT+AGG 0.193360 5.3:+6601966 MS.gene54619:CDS
ATGGATGTTGGTTTAAATTT+GGG 0.221824 5.3:-6603352 None:intergenic
ATCTTAGTTATGTATTTAAA+TGG 0.224199 5.3:-6604429 None:intergenic
TTTACATAACCACGTGGTTT+TGG 0.228610 5.3:-6603595 None:intergenic
CGTTCAAGCTTCTGATCTTC+TGG 0.239657 5.3:-6604075 None:intergenic
TTCAAACTACTTTCGAGTTC+TGG 0.240711 5.3:-6603253 None:intergenic
GTTAAGAGTGGTGAAGATTT+AGG 0.245357 5.3:+6602122 MS.gene54619:CDS
TGGCCTTCATCGCCAGATTC+AGG 0.250113 5.3:+6603909 MS.gene54619:CDS
CTTGAACTTGAGTGCGAATC+TGG 0.264717 5.3:-6604885 None:intergenic
AGAATAGAGCTTAATATAAT+TGG 0.267824 5.3:+6603889 MS.gene54619:CDS
CAACTAGTATTGTTGCTTCC+GGG 0.287565 5.3:+6603971 MS.gene54619:CDS
TCTTCGTTATTATCCAAAAT+AGG 0.293857 5.3:-6602569 None:intergenic
GGTGATCATAAAGGACATTC+TGG 0.295328 5.3:-6605004 None:intergenic
ATAGCTCCATTATGATTAAA+TGG 0.296004 5.3:-6604561 None:intergenic
TCCTTGAATTCCATCCCTTC+TGG 0.302980 5.3:+6604723 MS.gene54619:CDS
GATTTAGGTGGTGGTGATTC+GGG 0.318391 5.3:+6602137 MS.gene54619:CDS
TGAGTCATATTGGCAGGATA+TGG 0.322593 5.3:+6604215 MS.gene54619:CDS
GTTGGAGGGCACTTGCATTT+AGG 0.324234 5.3:-6604618 None:intergenic
AAAGGCTGTAATTGTACTAA+TGG 0.324470 5.3:+6604486 MS.gene54619:CDS
TGAAGACTGTAGCTTGAAAA+AGG 0.324757 5.3:+6602379 MS.gene54619:CDS
GGGCATGGAAGCTGTGGATA+TGG 0.325224 5.3:+6602478 MS.gene54619:CDS
GGGAAGCCAGTGATGGTAAA+TGG 0.328236 5.3:+6601987 MS.gene54619:CDS
GCAACTAGTATTGTTGCTTC+CGG 0.330626 5.3:+6603970 MS.gene54619:CDS
TTAGTACAATTACAGCCTTT+TGG 0.332092 5.3:-6604483 None:intergenic
GGAACCACCTATATTGATAT+TGG 0.333643 5.3:-6602870 None:intergenic
GGAGACTTTGGATGCGGAAT+TGG 0.341628 5.3:+6602616 MS.gene54619:CDS
TGAAGGAGGCTTTAACTAAA+AGG 0.341984 5.3:+6602903 MS.gene54619:CDS
AAGATCATGGGATCTGTTCC+TGG 0.350847 5.3:+6603838 MS.gene54619:CDS
AAAGGTGTACTAAATCATTC+TGG 0.352831 5.3:+6603454 MS.gene54619:CDS
TTTGATTGAAAAGATGAATT+CGG 0.361033 5.3:+6601920 None:intergenic
AATCTATACCACCCTGAATC+TGG 0.365878 5.3:-6603921 None:intergenic
GAGATTCCATTTAATCATAA+TGG 0.367693 5.3:+6604555 MS.gene54619:CDS
AACATTCTGAAGAAGAATTA+GGG 0.368058 5.3:+6601967 MS.gene54619:CDS
AGATTTAGGTGGTGGTGATT+CGG 0.370179 5.3:+6602136 MS.gene54619:CDS
CGGTATGGAAACTTCAGATA+TGG 0.371541 5.3:+6602742 MS.gene54619:CDS
GACATTCTGGGCATAGAGAT+TGG 0.378566 5.3:-6604991 None:intergenic
TATGGTGTTCACAGCACATA+TGG 0.381418 5.3:-6604388 None:intergenic
CATGGTCTCATCTCATCAAT+TGG 0.383281 5.3:+6602541 MS.gene54619:CDS
AGAATGATTTAGTACACCTT+TGG 0.384346 5.3:-6603452 None:intergenic
CCGGAAGAATGTGGACCGTT+TGG 0.384555 5.3:+6602074 MS.gene54619:CDS
ACATTCTGGGCATAGAGATT+GGG 0.385745 5.3:-6604990 None:intergenic
TTTATGATCACCATGACAAC+AGG 0.387530 5.3:+6605015 MS.gene54619:CDS
TGAAGCTTCAAAAGTGGAAT+TGG 0.396134 5.3:+6602454 MS.gene54619:CDS
GATTCTTTCACATTTGACTT+TGG 0.398140 5.3:-6603748 None:intergenic
TCATTGTCCAATATCAATAT+AGG 0.398722 5.3:+6602863 MS.gene54619:CDS
ACTTTCCGACGCTTAAACTT+AGG 0.400866 5.3:-6602032 None:intergenic
TTCTACAAACAGCTTGGAAC+AGG 0.402055 5.3:-6603699 None:intergenic
TCAAACTACTTTCGAGTTCT+GGG 0.404581 5.3:-6603252 None:intergenic
AAATGACGGACCTGCAGAAC+TGG 0.405443 5.3:+6602712 MS.gene54619:CDS
GAAAGTAGTGCTAGGTTTGA+TGG 0.408534 5.3:+6603291 MS.gene54619:CDS
GTTTCGCTTGCGAAGAAAGC+CGG 0.413635 5.3:+6604263 MS.gene54619:CDS
TCAAATTGATGAGTCTACTT+TGG 0.415306 5.3:+6602688 MS.gene54619:CDS
AAAATCAGCTTCAACAAAGT+TGG 0.420516 5.3:-6603089 None:intergenic
GCGAGGTCAAGAATTCTGTT+AGG 0.421124 5.3:+6604124 MS.gene54619:CDS
TGTGGTTCTGTGGAATGTAC+TGG 0.421622 5.3:+6605164 MS.gene54619:CDS
GCCAATCTCATCTCAGTAGA+TGG 0.421747 5.3:-6603148 None:intergenic
CACCCTGAATCTGGCGATGA+AGG 0.425090 5.3:-6603912 None:intergenic
TGTTGTCATGGTGATCATAA+AGG 0.429329 5.3:-6605013 None:intergenic
TCTATGAAGTTGAGTCATAT+TGG 0.437887 5.3:+6604205 MS.gene54619:CDS
GACATAGCTACCTCGCCAAC+TGG 0.438153 5.3:-6602824 None:intergenic
ATTGGTGGGCATGGAGACTT+TGG 0.440213 5.3:+6602604 MS.gene54619:CDS
TGCAATATTGTCCCTCCAAA+AGG 0.442817 5.3:+6604468 MS.gene54619:CDS
GAGTCATATTGGCAGGATAT+GGG 0.443386 5.3:+6604216 MS.gene54619:CDS
AGAAGATCAGAAGCTTGAAC+GGG 0.449548 5.3:+6604077 MS.gene54619:CDS
GGAAGCTGTGGATATGGAAT+TGG 0.449691 5.3:+6602484 MS.gene54619:CDS
GGCCAAGTCAGAATGTCCTT+GGG 0.450886 5.3:+6603312 MS.gene54619:CDS
TCATCACAAACCGACATTGA+TGG 0.458444 5.3:-6601945 None:intergenic
CGGGTCAACCAGAGCTTGCT+TGG 0.460037 5.3:+6604283 MS.gene54619:CDS
TCTGTTCCTGGGGTTGAAGT+TGG 0.460888 5.3:+6603850 MS.gene54619:CDS
TAAAACCAAGTCAATGGGAT+GGG 0.462217 5.3:+6604692 MS.gene54619:CDS
TGAACCTGCAAAAGTGGAAT+TGG 0.464663 5.3:+6602322 MS.gene54619:CDS
ACGCTCATCCTGGCTGAGAC+GGG 0.467824 5.3:-6602990 None:intergenic
TGGCCAAGTCAGAATGTCCT+TGG 0.468262 5.3:+6603311 MS.gene54619:CDS
GGAAAACATGAACATCGTTA+AGG 0.468416 5.3:+6603198 MS.gene54619:CDS
AGTACCTTCCAAGCAAGCTC+TGG 0.469016 5.3:-6604291 None:intergenic
TCCAGAAGGGATGGAATTCA+AGG 0.469469 5.3:-6604724 None:intergenic
TATAATAGAGTCAGCCAACT+TGG 0.470293 5.3:+6604645 MS.gene54619:CDS
GAGTCTCCATTTACCATCAC+TGG 0.471142 5.3:-6601993 None:intergenic
GGCCTTCATCGCCAGATTCA+GGG 0.471401 5.3:+6603910 MS.gene54619:CDS
ACTATCGATGCCGCTCAGTT+CGG 0.474989 5.3:+6604933 MS.gene54619:CDS
GGGACAATATTGCAACAATC+AGG 0.476635 5.3:-6604459 None:intergenic
GAATTCTGTTAGGGTGATAC+GGG 0.481274 5.3:+6604134 MS.gene54619:CDS
GGCACTGGATAATCATCATC+AGG 0.481375 5.3:+6603168 MS.gene54619:CDS
CAGAAGATCAGAAGCTTGAA+CGG 0.482485 5.3:+6604076 MS.gene54619:CDS
TATGGGGCCACATGGGAAGC+TGG 0.483438 5.3:+6604233 MS.gene54619:CDS
GCTCCTTTAGACGCTCATCC+TGG 0.484276 5.3:-6603000 None:intergenic
AGAATTCTGTTAGGGTGATA+CGG 0.488400 5.3:+6604133 MS.gene54619:CDS
ATCTTATATATCAGAGGCAC+CGG 0.488681 5.3:+6602799 MS.gene54619:CDS
AGAACTCGAAAGTAGTTTGA+AGG 0.490279 5.3:+6603255 MS.gene54619:CDS
ATTTAGTACACCTTTGGACT+TGG 0.490483 5.3:-6603446 None:intergenic
GTCTCATCTCATCAAGTGGA+TGG 0.491155 5.3:+6602413 MS.gene54619:CDS
GTTGAATATTTATGCCAAGT+TGG 0.491644 5.3:-6604659 None:intergenic
CCAAACGGTCCACATTCTTC+CGG 0.491712 5.3:-6602074 None:intergenic
GATATGGAATTTACAACAGA+AGG 0.491786 5.3:+6602758 MS.gene54619:CDS
CCGACCAATGCCAGTTCTGC+AGG 0.494283 5.3:-6602722 None:intergenic
AACTAGTATTGTTGCTTCCG+GGG 0.494402 5.3:+6603972 MS.gene54619:CDS
AGGGAATGCGGTCAAGAAGC+TGG 0.495760 5.3:+6603114 MS.gene54619:CDS
GTTATGTATTTAAATGGAGG+GGG 0.500203 5.3:-6604423 None:intergenic
CTTGGTCGTAGTAATTTAAG+TGG 0.500245 5.3:+6603628 MS.gene54619:CDS
TAATGAAGGGGAGAAGATCA+TGG 0.501403 5.3:+6603825 MS.gene54619:CDS
TACTGAGATGAGATTGGCAC+TGG 0.503247 5.3:+6603153 MS.gene54619:CDS
TGGCAGGATATGGGGCCACA+TGG 0.503771 5.3:+6604225 MS.gene54619:CDS
CTGACTCTATTATAACAAGT+TGG 0.504283 5.3:-6604636 None:intergenic
CGCGTTGAAGATATTTCCTA+CGG 0.505475 5.3:+6604351 MS.gene54619:CDS
AAAACTGACATTGGTGGGCA+TGG 0.507583 5.3:+6602595 MS.gene54619:CDS
TTTCGCTTGCGAAGAAAGCC+GGG 0.508175 5.3:+6604264 MS.gene54619:CDS
GCCGCTCAGTTCGGTAATGT+AGG 0.508262 5.3:+6604942 MS.gene54619:CDS
TAATCATCATCAGGTTAAAG+TGG 0.509315 5.3:+6603177 MS.gene54619:CDS
CAACGATGAACCTGCAAAAG+TGG 0.509691 5.3:+6602316 MS.gene54619:CDS
AAAGGGAGCTATGTTAATGA+AGG 0.510173 5.3:+6603811 MS.gene54619:CDS
TGTACTGGTAGGTTGTATTG+AGG 0.511536 5.3:+6605179 MS.gene54619:CDS
TAACAATGAAGCTTCAAAAG+TGG 0.511580 5.3:+6602448 MS.gene54619:CDS
AAGGTGTACTAAATCATTCT+GGG 0.513245 5.3:+6603455 MS.gene54619:CDS
AAATTTAAACCAACATCCAT+TGG 0.513515 5.3:+6603355 MS.gene54619:CDS
GGACCGTTTGGTTCTGCTGA+TGG 0.514374 5.3:+6602086 MS.gene54619:CDS
TGATAGTCCCAACGACGAAA+AGG 0.515728 5.3:+6602166 MS.gene54619:CDS
GCTACCTCGCCAACTGGAGC+CGG 0.515868 5.3:-6602818 None:intergenic
ATTGGTGGGCGTAGAAGCTA+TGG 0.516134 5.3:+6602340 MS.gene54619:CDS
ACCATCTACTGAGATGAGAT+TGG 0.516227 5.3:+6603147 MS.gene54619:CDS
TTGAGTGCGAATCTGGCAAA+AGG 0.518542 5.3:-6604878 None:intergenic
AATATCAATATAGGTGGTTC+CGG 0.518966 5.3:+6602872 MS.gene54619:CDS
GTGATCATAAAGGACATTCT+GGG 0.521375 5.3:-6605003 None:intergenic
CTTATCTGATCAAGTGGATG+TGG 0.522415 5.3:+6602283 MS.gene54619:CDS
TACACCCCATCCCATTGACT+TGG 0.523806 5.3:-6604697 None:intergenic
TGAAGACTGTAGCTTGAGAA+AGG 0.523979 5.3:+6602511 MS.gene54619:CDS
CGAGGTCAAGAATTCTGTTA+GGG 0.527113 5.3:+6604125 MS.gene54619:CDS
TGAAGTTGAGTCATATTGGC+AGG 0.528849 5.3:+6604209 MS.gene54619:CDS
CAATGCTCCCCGTCTCAGCC+AGG 0.529270 5.3:+6602982 MS.gene54619:CDS
GACGCTCATCCTGGCTGAGA+CGG 0.529301 5.3:-6602991 None:intergenic
AAGGAAGCTGAACAAAGAAC+TGG 0.530093 5.3:+6604786 MS.gene54619:CDS
AGCTTCAAAAGTGGAATTGG+TGG 0.531376 5.3:+6602457 MS.gene54619:CDS
AGATCATGGGATCTGTTCCT+GGG 0.531698 5.3:+6603839 MS.gene54619:CDS
ATCGTAAGTCAGCTCTTGCA+AGG 0.532130 5.3:-6605078 None:intergenic
TCAACCAGAGCTTGCTTGGA+AGG 0.533430 5.3:+6604287 MS.gene54619:CDS
TAGTTATGTATTTAAATGGA+GGG 0.533607 5.3:-6604425 None:intergenic
ACTCTATTATAACAAGTTGG+AGG 0.533970 5.3:-6604633 None:intergenic
AAGGGAGCTATGTTAATGAA+GGG 0.535402 5.3:+6603812 MS.gene54619:CDS
CCTAGCACTACTTTCCTGCC+TGG 0.535459 5.3:-6603283 None:intergenic
AAAAGTGGAATTGGTGGGCA+TGG 0.537948 5.3:+6602463 MS.gene54619:CDS
CATTCTGGGCATAGAGATTG+GGG 0.538907 5.3:-6604989 None:intergenic
CAGCCAGGATGAGCGTCTAA+AGG 0.542079 5.3:+6602997 MS.gene54619:CDS
GATACAAAACTGACATTGGT+GGG 0.544785 5.3:+6602590 MS.gene54619:CDS
AAAGCTTTCTACAAACAGCT+TGG 0.545465 5.3:-6603705 None:intergenic
TGGATGTTGGTTTAAATTTG+GGG 0.545850 5.3:-6603351 None:intergenic
CTCATCTCATCAAGTGGATG+GGG 0.546998 5.3:+6602415 MS.gene54619:CDS
AGTTATGTATTTAAATGGAG+GGG 0.547903 5.3:-6604424 None:intergenic
GATAAAACTTCCAGAAGGGA+TGG 0.548978 5.3:-6604733 None:intergenic
TTAGTTATGTATTTAAATGG+AGG 0.549426 5.3:-6604426 None:intergenic
TTAAAACCAAGTCAATGGGA+TGG 0.552622 5.3:+6604691 MS.gene54619:CDS
CGAAGATACAAAACTGACAT+TGG 0.553321 5.3:+6602586 MS.gene54619:CDS
TCTCATCTCATCAAGTGGAT+GGG 0.553872 5.3:+6602414 MS.gene54619:CDS
AGCCTCCTTCATACAAGCAC+CGG 0.554334 5.3:-6602891 None:intergenic
GTTTGAAGGTCTCACCAGGC+AGG 0.555243 5.3:+6603269 MS.gene54619:CDS
TTTAAACCAACATCCATTGG+TGG 0.555528 5.3:+6603358 MS.gene54619:CDS
TGGTTCCGGTGCTTGTATGA+AGG 0.555754 5.3:+6602886 MS.gene54619:CDS
CATGAACATCGTTAAGGTCG+AGG 0.556379 5.3:+6603204 MS.gene54619:CDS
CCGCTCAGTTCGGTAATGTA+GGG 0.558292 5.3:+6604943 MS.gene54619:CDS
AACAACAGTAATCTTTGGGA+TGG 0.558592 5.3:+6604846 MS.gene54619:CDS
AAGTGACTGTAGTTTGAAGA+AGG 0.559982 5.3:+6602247 MS.gene54619:CDS
TCTGTACCACCAATGGATGT+TGG 0.560078 5.3:-6603364 None:intergenic
CGCTCATCCTGGCTGAGACG+GGG 0.560464 5.3:-6602989 None:intergenic
TATATTGATATTGGACAATG+AGG 0.560906 5.3:-6602861 None:intergenic
AGAACTGGCATTGGTCGGTA+TGG 0.564148 5.3:+6602727 MS.gene54619:CDS
AAATTCTAGTTCTGATGACA+TGG 0.567262 5.3:+6603504 MS.gene54619:CDS
TGCTGATGGTATGAGTGTTG+AGG 0.567641 5.3:+6602100 MS.gene54619:CDS
ATGAGAGTGACTCAGTGGCC+CGG 0.569197 5.3:+6603653 MS.gene54619:CDS
CAAGCAAGCTCTGGTTGACC+CGG 0.569213 5.3:-6604282 None:intergenic
CCTGTCATCTGTACCACCAA+TGG 0.569944 5.3:-6603371 None:intergenic
CCATTGGTGGTACAGATGAC+AGG 0.575959 5.3:+6603371 MS.gene54619:CDS
AAAACCAAGTCAATGGGATG+GGG 0.578324 5.3:+6604693 MS.gene54619:CDS
ACTAGTATTGTTGCTTCCGG+GGG 0.578670 5.3:+6603973 MS.gene54619:CDS
AAGCCTCTAGTCTATGAGTG+TGG 0.578730 5.3:+6604594 MS.gene54619:CDS
TGGAGAGGTTCTTGAGGACA+AGG 0.580571 5.3:+6604767 MS.gene54619:CDS
AGGGAGCTATGTTAATGAAG+GGG 0.580705 5.3:+6603813 MS.gene54619:CDS
ATTGGTGGGCATGGAAGCTG+TGG 0.583994 5.3:+6602472 MS.gene54619:CDS
GGGCATGGAGACTTTGGATG+CGG 0.586754 5.3:+6602610 MS.gene54619:CDS
TGTGGTCTCATCTCATCAAG+TGG 0.587074 5.3:+6602409 MS.gene54619:CDS
CGGACCTGCAGAACTGGCAT+TGG 0.588611 5.3:+6602718 MS.gene54619:CDS
CACAGATAAAACTTCCAGAA+GGG 0.588807 5.3:-6604737 None:intergenic
GGCAGGATATGGGGCCACAT+GGG 0.589278 5.3:+6604226 MS.gene54619:CDS
AGATACAAAACTGACATTGG+TGG 0.589399 5.3:+6602589 MS.gene54619:CDS
ATGGTGTTCACAGCACATAT+GGG 0.589870 5.3:-6604387 None:intergenic
AGCCTCTAGTCTATGAGTGT+GGG 0.592603 5.3:+6604595 MS.gene54619:CDS
TCACAGATAAAACTTCCAGA+AGG 0.593451 5.3:-6604738 None:intergenic
TCCCCAAGGACATTCTGACT+TGG 0.593577 5.3:-6603314 None:intergenic
GAGTCTACTTTGGCAAATGA+CGG 0.594825 5.3:+6602698 MS.gene54619:CDS
TAAGTCAGCTCTTGCAAGGG+AGG 0.595124 5.3:-6605074 None:intergenic
CAATTGATGAGATGAGACCA+TGG 0.596287 5.3:-6602540 None:intergenic
CATGAGGAACCCTGTTGTCA+TGG 0.598124 5.3:-6605025 None:intergenic
AAGCAACAATACTAGTTGCA+AGG 0.598665 5.3:-6603966 None:intergenic
AGTAGTTTGAAGGTCTCACC+AGG 0.598759 5.3:+6603265 MS.gene54619:CDS
TCAGAGGCACCGGCTCCAGT+TGG 0.598975 5.3:+6602809 MS.gene54619:CDS
GGATGTTGGTTTAAATTTGG+GGG 0.601362 5.3:-6603350 None:intergenic
AGTCATATTGGCAGGATATG+GGG 0.602342 5.3:+6604217 MS.gene54619:CDS
CCAGGCAGGAAAGTAGTGCT+AGG 0.602466 5.3:+6603283 MS.gene54619:CDS
CTCTATTATAACAAGTTGGA+GGG 0.603275 5.3:-6604632 None:intergenic
AATGAAGGGGAGAAGATCAT+GGG 0.604075 5.3:+6603826 MS.gene54619:CDS
TCATCACCAACTTCAACCCC+AGG 0.604148 5.3:-6603856 None:intergenic
TTATGTATTTAAATGGAGGG+GGG 0.605614 5.3:-6604422 None:intergenic
AGTGGTGAAGATTTAGGTGG+TGG 0.605730 5.3:+6602128 MS.gene54619:CDS
TTCCGACGCTTAAACTTAGG+CGG 0.605896 5.3:-6602029 None:intergenic
AGATTTATCTTATATATCAG+AGG 0.608018 5.3:+6602793 MS.gene54619:CDS
TTCCGGTGCTTGTATGAAGG+AGG 0.609421 5.3:+6602889 MS.gene54619:CDS
CGGGGATCTGAATCAGCGGA+TGG 0.611571 5.3:+6604153 MS.gene54619:CDS
TGTGGTCTTATCTGATCAAG+TGG 0.612824 5.3:+6602277 MS.gene54619:CDS
TATCTGTGAATATATTGGAG+AGG 0.613185 5.3:+6604752 MS.gene54619:CDS
GCTTCAAAAGTGGAATTGGT+GGG 0.613307 5.3:+6602458 MS.gene54619:CDS
ACCTGCAAAAGTGGAATTGG+TGG 0.613722 5.3:+6602325 MS.gene54619:CDS
TGGTGGTACAGATGACAGGA+AGG 0.614455 5.3:+6603375 MS.gene54619:CDS
AGAATTAGGGAAGCCAGTGA+TGG 0.615410 5.3:+6601980 MS.gene54619:CDS
ATACCATCAGCAGAACCAAA+CGG 0.615481 5.3:-6602089 None:intergenic
AATTGATGAGATGAGACCAT+GGG 0.617974 5.3:-6602539 None:intergenic
AGTGAAGTAGTGAATGATGT+TGG 0.618250 5.3:+6604906 MS.gene54619:CDS
AGCAAGATATATGTTTACGA+TGG 0.618907 5.3:+6604180 MS.gene54619:CDS
GGCACCGGCTCCAGTTGGCG+AGG 0.619867 5.3:+6602814 MS.gene54619:CDS
CTTGAGAAAGGAAGATCCCA+TGG 0.621289 5.3:+6602523 MS.gene54619:CDS
ATCCGCCTAAGTTTAAGCGT+CGG 0.622802 5.3:+6602027 MS.gene54619:CDS
ATGAACATCGTTAAGGTCGA+GGG 0.623227 5.3:+6603205 MS.gene54619:CDS
GAATTCGGAGCCATCAATGT+CGG 0.623601 5.3:+6601935 MS.gene54619:CDS
TTATCTGATCAAGTGGATGT+GGG 0.624073 5.3:+6602284 MS.gene54619:CDS
GCGTTGAAGATATTTCCTAC+GGG 0.625923 5.3:+6604352 MS.gene54619:CDS
GGCCCACACTCATAGACTAG+AGG 0.626323 5.3:-6604597 None:intergenic
CAAATGTGAAAGAATCAAAG+AGG 0.632909 5.3:+6603755 MS.gene54619:CDS
TTGTCCAATATCAATATAGG+TGG 0.635936 5.3:+6602866 MS.gene54619:CDS
TGCTTTGAAGAATAGTAGCG+AGG 0.636465 5.3:+6604107 MS.gene54619:CDS
CCTGCAGAACTGGCATTGGT+CGG 0.637297 5.3:+6602722 MS.gene54619:CDS
TAAGTCATCAGCATAGCCCC+CGG 0.637423 5.3:-6603989 None:intergenic
ACTTGATCAGATAAGACCAC+AGG 0.642209 5.3:-6602275 None:intergenic
ACTTGATGAGATGAGACCAC+AGG 0.643420 5.3:-6602407 None:intergenic
AAAACTGCGACCAAGTCCAA+AGG 0.643866 5.3:+6603436 MS.gene54619:CDS
CATGGGTCAATTAGTAACAC+GGG 0.644532 5.3:+6603522 MS.gene54619:CDS
TTTGAAGAAGGAGGATCCTG+TGG 0.645117 5.3:+6602259 MS.gene54619:CDS
TCGTAAGTCAGCTCTTGCAA+GGG 0.649908 5.3:-6605077 None:intergenic
AAATGTGAAAGAATCAAAGA+GGG 0.651541 5.3:+6603756 MS.gene54619:CDS
GATCAAGTTCGTGATTCCGA+TGG 0.655471 5.3:+6605116 MS.gene54619:CDS
ATATATTGGAGAGGTTCTTG+AGG 0.657084 5.3:+6604761 MS.gene54619:CDS
GATCATGGGATCTGTTCCTG+GGG 0.665855 5.3:+6603840 MS.gene54619:CDS
GCCAAGTCAGAATGTCCTTG+GGG 0.668770 5.3:+6603313 MS.gene54619:CDS
ACATGGGTCAATTAGTAACA+CGG 0.669242 5.3:+6603521 MS.gene54619:CDS
AAGAGTGGTGAAGATTTAGG+TGG 0.670342 5.3:+6602125 MS.gene54619:CDS
CTTAAATTACTACGACCAAG+AGG 0.670569 5.3:-6603625 None:intergenic
CAGTGGCCCGGAATAAAGTG+AGG 0.675048 5.3:+6603665 MS.gene54619:CDS
GTTCTGTGGAATGTACTGGT+AGG 0.675695 5.3:+6605168 MS.gene54619:CDS
ATGAGTGTTGAGGTTAAGAG+TGG 0.679116 5.3:+6602110 MS.gene54619:CDS
AATTCTAGTTCTGATGACAT+GGG 0.681067 5.3:+6603505 MS.gene54619:CDS
GGTGGTACAGATGACAGGAA+GGG 0.684498 5.3:+6603376 MS.gene54619:CDS
GCAGCAAATAACATGACATG+AGG 0.684985 5.3:-6605041 None:intergenic
TTGATATATACAGGGCAGGG+TGG 0.688777 5.3:+6604027 MS.gene54619:CDS
TTATGATCACCATGACAACA+GGG 0.689712 5.3:+6605016 MS.gene54619:CDS
GATACGGGGATCTGAATCAG+CGG 0.692287 5.3:+6604149 MS.gene54619:CDS
TGACTGTAGTTTGAAGAAGG+AGG 0.692610 5.3:+6602250 MS.gene54619:CDS
TGGTCATGAGAGTGACTCAG+TGG 0.696808 5.3:+6603648 MS.gene54619:CDS
GAAGATCAGAAGCTTGAACG+GGG 0.698030 5.3:+6604078 MS.gene54619:CDS
CCTGCAAAAGTGGAATTGGT+GGG 0.702732 5.3:+6602326 MS.gene54619:CDS
AAAAGTGTCCCAAAACCACG+TGG 0.710733 5.3:+6603586 MS.gene54619:CDS
CCCTACATTACCGAACTGAG+CGG 0.715373 5.3:-6604943 None:intergenic
GCATTGCGTCCACATAAACG+TGG 0.716479 5.3:-6602965 None:intergenic
TTATAAACCAGCTTCCCATG+TGG 0.718258 5.3:-6604240 None:intergenic
GAACAAATATCAGATCCCCA+AGG 0.723725 5.3:-6603328 None:intergenic
GTACACAAGAACATTTCTCG+TGG 0.725371 5.3:-6604518 None:intergenic
CTTCATCGCCAGATTCAGGG+TGG 0.729437 5.3:+6603913 MS.gene54619:CDS
AAAACATTTACATAACCACG+TGG 0.753070 5.3:-6603601 None:intergenic
AATTCTGTTAGGGTGATACG+GGG 0.761052 5.3:+6604135 MS.gene54619:CDS
ATTCTGGGCATAGAGATTGG+GGG 0.768685 5.3:-6604988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTAGTTATGTATTTAAA+TGG - chr5.3:6604432-6604451 None:intergenic 15.0%
!!! ATAAGATAAATCTTGTTTTA+CGG - chr5.3:6602786-6602805 None:intergenic 15.0%
!! AAAAAGTTCAAAAAAAGAGA+AGG + chr5.3:6604324-6604343 MS.gene54619:CDS 20.0%
!! AGAATAGAGCTTAATATAAT+TGG + chr5.3:6603889-6603908 MS.gene54619:CDS 20.0%
!! AGATTTATCTTATATATCAG+AGG + chr5.3:6602793-6602812 MS.gene54619:CDS 20.0%
!! TAGTTATGTATTTAAATGGA+GGG - chr5.3:6604428-6604447 None:intergenic 20.0%
!! TTAGTTATGTATTTAAATGG+AGG - chr5.3:6604429-6604448 None:intergenic 20.0%
!! TTATATGAAGCAAAAAAACA+AGG + chr5.3:6603942-6603961 MS.gene54619:CDS 20.0%
!!! AAGTGTTTGTTATTTTCATT+AGG - chr5.3:6603565-6603584 None:intergenic 20.0%
!!! AATTTTTAAAACCAAGTCAA+TGG + chr5.3:6604686-6604705 MS.gene54619:CDS 20.0%
!!! AGTTTTATCTGTGAATATAT+TGG + chr5.3:6604747-6604766 MS.gene54619:CDS 20.0%
!!! ATTTTTAAAACCAAGTCAAT+GGG + chr5.3:6604687-6604706 MS.gene54619:CDS 20.0%
!!! TTTTCTCTTTTCTTTTTCAA+CGG - chr5.3:6603487-6603506 None:intergenic 20.0%
! AAATGTGAAAGAATCAAAGA+GGG + chr5.3:6603756-6603775 MS.gene54619:CDS 25.0%
! AAATTTAAACCAACATCCAT+TGG + chr5.3:6603355-6603374 MS.gene54619:CDS 25.0%
! ACAAAAACAACAGTAATCTT+TGG + chr5.3:6604841-6604860 MS.gene54619:CDS 25.0%
! ACAAGCTTCAAAAATACTTA+AGG + chr5.3:6603786-6603805 MS.gene54619:CDS 25.0%
! AGTTATGTATTTAAATGGAG+GGG - chr5.3:6604427-6604446 None:intergenic 25.0%
! ATAGCTCCATTATGATTAAA+TGG - chr5.3:6604564-6604583 None:intergenic 25.0%
! CAAAAACAACAGTAATCTTT+GGG + chr5.3:6604842-6604861 MS.gene54619:CDS 25.0%
! CAAAAATACTTAAGGAGAAA+GGG + chr5.3:6603794-6603813 MS.gene54619:CDS 25.0%
! GAGATTCCATTTAATCATAA+TGG + chr5.3:6604555-6604574 MS.gene54619:CDS 25.0%
! TATATTGATATTGGACAATG+AGG - chr5.3:6602864-6602883 None:intergenic 25.0%
! TCAAAAATACTTAAGGAGAA+AGG + chr5.3:6603793-6603812 MS.gene54619:CDS 25.0%
! TCATTGTCCAATATCAATAT+AGG + chr5.3:6602863-6602882 MS.gene54619:CDS 25.0%
! TCTTCGTTATTATCCAAAAT+AGG - chr5.3:6602572-6602591 None:intergenic 25.0%
!! AACATTCTGAAGAAGAATTA+GGG + chr5.3:6601967-6601986 MS.gene54619:CDS 25.0%
!! GATGAGTATCTTTTTGATAT+TGG + chr5.3:6604813-6604832 MS.gene54619:CDS 25.0%
!! TATGTAAATGTTTTTCCTCT+TGG + chr5.3:6603610-6603629 MS.gene54619:CDS 25.0%
!! TCATTGAACTCAAAATTTTG+AGG - chr5.3:6602194-6602213 None:intergenic 25.0%
!! TTTCTTTTTGATATTGCCAT+CGG - chr5.3:6605135-6605154 None:intergenic 25.0%
!!! AAAAAGAAATACTGCTTTTG+TGG + chr5.3:6605146-6605165 MS.gene54619:CDS 25.0%
!!! AATGGATGTTGGTTTAAATT+TGG - chr5.3:6603356-6603375 None:intergenic 25.0%
!!! ATGGATGTTGGTTTAAATTT+GGG - chr5.3:6603355-6603374 None:intergenic 25.0%
!!! CAGATGTTTTGATATATACA+GGG + chr5.3:6604019-6604038 MS.gene54619:CDS 25.0%
AAAACATTTACATAACCACG+TGG - chr5.3:6603604-6603623 None:intergenic 30.0%
AAAATCAGCTTCAACAAAGT+TGG - chr5.3:6603092-6603111 None:intergenic 30.0%
AAAGGCTGTAATTGTACTAA+TGG + chr5.3:6604486-6604505 MS.gene54619:CDS 30.0%
AAGGTGTACTAAATCATTCT+GGG + chr5.3:6603455-6603474 MS.gene54619:CDS 30.0%
AATATCAATATAGGTGGTTC+CGG + chr5.3:6602872-6602891 MS.gene54619:CDS 30.0%
AGAATGATTTAGTACACCTT+TGG - chr5.3:6603455-6603474 None:intergenic 30.0%
AGCAAGATATATGTTTACGA+TGG + chr5.3:6604180-6604199 MS.gene54619:CDS 30.0%
CAAATGTGAAAGAATCAAAG+AGG + chr5.3:6603755-6603774 MS.gene54619:CDS 30.0%
CTGACTCTATTATAACAAGT+TGG - chr5.3:6604639-6604658 None:intergenic 30.0%
GATATGGAATTTACAACAGA+AGG + chr5.3:6602758-6602777 MS.gene54619:CDS 30.0%
GTTATGTATTTAAATGGAGG+GGG - chr5.3:6604426-6604445 None:intergenic 30.0%
GTTCTTGTGTACTCAAAAAT+GGG + chr5.3:6604529-6604548 MS.gene54619:CDS 30.0%
GTTGAATATTTATGCCAAGT+TGG - chr5.3:6604662-6604681 None:intergenic 30.0%
TAACAATGAAGCTTCAAAAG+TGG + chr5.3:6602448-6602467 MS.gene54619:CDS 30.0%
TAATCATCATCAGGTTAAAG+TGG + chr5.3:6603177-6603196 MS.gene54619:CDS 30.0%
TATCTGTGAATATATTGGAG+AGG + chr5.3:6604752-6604771 MS.gene54619:CDS 30.0%
TCAAATTGATGAGTCTACTT+TGG + chr5.3:6602688-6602707 MS.gene54619:CDS 30.0%
TCTATGAAGTTGAGTCATAT+TGG + chr5.3:6604205-6604224 MS.gene54619:CDS 30.0%
TGTTCTTGTGTACTCAAAAA+TGG + chr5.3:6604528-6604547 MS.gene54619:CDS 30.0%
TTATGTATTTAAATGGAGGG+GGG - chr5.3:6604425-6604444 None:intergenic 30.0%
TTCTTGTGTACTCAAAAATG+GGG + chr5.3:6604530-6604549 MS.gene54619:CDS 30.0%
TTGTCCAATATCAATATAGG+TGG + chr5.3:6602866-6602885 MS.gene54619:CDS 30.0%
! AAAGGTGTACTAAATCATTC+TGG + chr5.3:6603454-6603473 MS.gene54619:CDS 30.0%
! ACTCTATTATAACAAGTTGG+AGG - chr5.3:6604636-6604655 None:intergenic 30.0%
! ATGTTTTCCTCACTTTATTC+CGG - chr5.3:6603675-6603694 None:intergenic 30.0%
! CTCTATTATAACAAGTTGGA+GGG - chr5.3:6604635-6604654 None:intergenic 30.0%
! GAACATTCTGAAGAAGAATT+AGG + chr5.3:6601966-6601985 MS.gene54619:CDS 30.0%
! GATTCTTTCACATTTGACTT+TGG - chr5.3:6603751-6603770 None:intergenic 30.0%
! TTAGTACAATTACAGCCTTT+TGG - chr5.3:6604486-6604505 None:intergenic 30.0%
!! AAATTCTAGTTCTGATGACA+TGG + chr5.3:6603504-6603523 MS.gene54619:CDS 30.0%
!! AATTCTAGTTCTGATGACAT+GGG + chr5.3:6603505-6603524 MS.gene54619:CDS 30.0%
!! TGGATGTTGGTTTAAATTTG+GGG - chr5.3:6603354-6603373 None:intergenic 30.0%
!! TTGTTGAAGCTGATTTTGAA+GGG + chr5.3:6603095-6603114 MS.gene54619:CDS 30.0%
!! TTTGTTGAAGCTGATTTTGA+AGG + chr5.3:6603094-6603113 MS.gene54619:CDS 30.0%
!!! GCAGATGTTTTGATATATAC+AGG + chr5.3:6604018-6604037 MS.gene54619:CDS 30.0%
!!! TGTTATTTTCTGCTTCTTGT+AGG - chr5.3:6603057-6603076 None:intergenic 30.0%
AAAGCTTTCTACAAACAGCT+TGG - chr5.3:6603708-6603727 None:intergenic 35.0%
AAAGGGAGCTATGTTAATGA+AGG + chr5.3:6603811-6603830 MS.gene54619:CDS 35.0%
AAGCAACAATACTAGTTGCA+AGG - chr5.3:6603969-6603988 None:intergenic 35.0%
AAGGGAGCTATGTTAATGAA+GGG + chr5.3:6603812-6603831 MS.gene54619:CDS 35.0%
AAGTGACTGTAGTTTGAAGA+AGG + chr5.3:6602247-6602266 MS.gene54619:CDS 35.0%
AATTGATGAGATGAGACCAT+GGG - chr5.3:6602542-6602561 None:intergenic 35.0%
ACATGGGTCAATTAGTAACA+CGG + chr5.3:6603521-6603540 MS.gene54619:CDS 35.0%
AGAACTCGAAAGTAGTTTGA+AGG + chr5.3:6603255-6603274 MS.gene54619:CDS 35.0%
AGAATTCTGTTAGGGTGATA+CGG + chr5.3:6604133-6604152 MS.gene54619:CDS 35.0%
AGATACAAAACTGACATTGG+TGG + chr5.3:6602589-6602608 MS.gene54619:CDS 35.0%
AGTGAAGTAGTGAATGATGT+TGG + chr5.3:6604906-6604925 MS.gene54619:CDS 35.0%
ATATATTGGAGAGGTTCTTG+AGG + chr5.3:6604761-6604780 MS.gene54619:CDS 35.0%
ATTTAGTACACCTTTGGACT+TGG - chr5.3:6603449-6603468 None:intergenic 35.0%
CACAGATAAAACTTCCAGAA+GGG - chr5.3:6604740-6604759 None:intergenic 35.0%
CGAAGATACAAAACTGACAT+TGG + chr5.3:6602586-6602605 MS.gene54619:CDS 35.0%
CTTAAATTACTACGACCAAG+AGG - chr5.3:6603628-6603647 None:intergenic 35.0%
CTTGGTCGTAGTAATTTAAG+TGG + chr5.3:6603628-6603647 MS.gene54619:CDS 35.0%
GATACAAAACTGACATTGGT+GGG + chr5.3:6602590-6602609 MS.gene54619:CDS 35.0%
GGAAAACATGAACATCGTTA+AGG + chr5.3:6603198-6603217 MS.gene54619:CDS 35.0%
GGAACCACCTATATTGATAT+TGG - chr5.3:6602873-6602892 None:intergenic 35.0%
GTGATCATAAAGGACATTCT+GGG - chr5.3:6605006-6605025 None:intergenic 35.0%
GTTAAGAGTGGTGAAGATTT+AGG + chr5.3:6602122-6602141 MS.gene54619:CDS 35.0%
TAAAACCAAGTCAATGGGAT+GGG + chr5.3:6604692-6604711 MS.gene54619:CDS 35.0%
TATAATAGAGTCAGCCAACT+TGG + chr5.3:6604645-6604664 MS.gene54619:CDS 35.0%
TCACAGATAAAACTTCCAGA+AGG - chr5.3:6604741-6604760 None:intergenic 35.0%
TCTTGTGTACTCAAAAATGG+GGG + chr5.3:6604531-6604550 MS.gene54619:CDS 35.0%
TGAAGACTGTAGCTTGAAAA+AGG + chr5.3:6602379-6602398 MS.gene54619:CDS 35.0%
TGAAGCTTCAAAAGTGGAAT+TGG + chr5.3:6602454-6602473 MS.gene54619:CDS 35.0%
TGTTGTCATGGTGATCATAA+AGG - chr5.3:6605016-6605035 None:intergenic 35.0%
TTAAAACCAAGTCAATGGGA+TGG + chr5.3:6604691-6604710 MS.gene54619:CDS 35.0%
TTATCTGATCAAGTGGATGT+GGG + chr5.3:6602284-6602303 MS.gene54619:CDS 35.0%
TTATGATCACCATGACAACA+GGG + chr5.3:6605016-6605035 MS.gene54619:CDS 35.0%
TTTAAACCAACATCCATTGG+TGG + chr5.3:6603358-6603377 MS.gene54619:CDS 35.0%
TTTATGATCACCATGACAAC+AGG + chr5.3:6605015-6605034 MS.gene54619:CDS 35.0%
! AACAACAGTAATCTTTGGGA+TGG + chr5.3:6604846-6604865 MS.gene54619:CDS 35.0%
! AGAGATTTTCCACGTTTATG+TGG + chr5.3:6602956-6602975 MS.gene54619:CDS 35.0%
! ATCTTATATATCAGAGGCAC+CGG + chr5.3:6602799-6602818 MS.gene54619:CDS 35.0%
! TACAATTACAGCCTTTTGGA+GGG - chr5.3:6604482-6604501 None:intergenic 35.0%
! TCAATTGGATGTGCCTATTT+TGG + chr5.3:6602556-6602575 MS.gene54619:CDS 35.0%
! TGAAGGAGGCTTTAACTAAA+AGG + chr5.3:6602903-6602922 MS.gene54619:CDS 35.0%
! TGTTTGTAGAAAGCTTTTGC+AGG + chr5.3:6603711-6603730 MS.gene54619:CDS 35.0%
! TGTTTTCCTCACTTTATTCC+GGG - chr5.3:6603674-6603693 None:intergenic 35.0%
! TTACATAACCACGTGGTTTT+GGG - chr5.3:6603597-6603616 None:intergenic 35.0%
! TTTACATAACCACGTGGTTT+TGG - chr5.3:6603598-6603617 None:intergenic 35.0%
!! GGATGTTGGTTTAAATTTGG+GGG - chr5.3:6603353-6603372 None:intergenic 35.0%
!! GTTTTGATATATACAGGGCA+GGG + chr5.3:6604024-6604043 MS.gene54619:CDS 35.0%
!! TCAAACTACTTTCGAGTTCT+GGG - chr5.3:6603255-6603274 None:intergenic 35.0%
!! TTCAAACTACTTTCGAGTTC+TGG - chr5.3:6603256-6603275 None:intergenic 35.0%
!!! TGTTTTGATATATACAGGGC+AGG + chr5.3:6604023-6604042 MS.gene54619:CDS 35.0%
AAAACCAAGTCAATGGGATG+GGG + chr5.3:6604693-6604712 MS.gene54619:CDS 40.0%
AAGAGTGGTGAAGATTTAGG+TGG + chr5.3:6602125-6602144 MS.gene54619:CDS 40.0%
AAGGAAGCTGAACAAAGAAC+TGG + chr5.3:6604786-6604805 MS.gene54619:CDS 40.0%
AATCTATACCACCCTGAATC+TGG - chr5.3:6603924-6603943 None:intergenic 40.0%
AATGAAGGGGAGAAGATCAT+GGG + chr5.3:6603826-6603845 MS.gene54619:CDS 40.0%
AATTCTGTTAGGGTGATACG+GGG + chr5.3:6604135-6604154 MS.gene54619:CDS 40.0%
ACATTCTGGGCATAGAGATT+GGG - chr5.3:6604993-6605012 None:intergenic 40.0%
ACCATCTACTGAGATGAGAT+TGG + chr5.3:6603147-6603166 MS.gene54619:CDS 40.0%
ACTTGATCAGATAAGACCAC+AGG - chr5.3:6602278-6602297 None:intergenic 40.0%
ACTTTCCGACGCTTAAACTT+AGG - chr5.3:6602035-6602054 None:intergenic 40.0%
AGAAGATCAGAAGCTTGAAC+GGG + chr5.3:6604077-6604096 MS.gene54619:CDS 40.0%
AGCTTCAAAAGTGGAATTGG+TGG + chr5.3:6602457-6602476 MS.gene54619:CDS 40.0%
AGGGAGCTATGTTAATGAAG+GGG + chr5.3:6603813-6603832 MS.gene54619:CDS 40.0%
AGTCATATTGGCAGGATATG+GGG + chr5.3:6604217-6604236 MS.gene54619:CDS 40.0%
ATACCATCAGCAGAACCAAA+CGG - chr5.3:6602092-6602111 None:intergenic 40.0%
ATGAACATCGTTAAGGTCGA+GGG + chr5.3:6603205-6603224 MS.gene54619:CDS 40.0%
ATGGTGTTCACAGCACATAT+GGG - chr5.3:6604390-6604409 None:intergenic 40.0%
CAATTGATGAGATGAGACCA+TGG - chr5.3:6602543-6602562 None:intergenic 40.0%
CAGAAGATCAGAAGCTTGAA+CGG + chr5.3:6604076-6604095 MS.gene54619:CDS 40.0%
CATGGGTCAATTAGTAACAC+GGG + chr5.3:6603522-6603541 MS.gene54619:CDS 40.0%
CATGGTCTCATCTCATCAAT+TGG + chr5.3:6602541-6602560 MS.gene54619:CDS 40.0%
CGAGGTCAAGAATTCTGTTA+GGG + chr5.3:6604125-6604144 MS.gene54619:CDS 40.0%
CGCGTTGAAGATATTTCCTA+CGG + chr5.3:6604351-6604370 MS.gene54619:CDS 40.0%
CGGTATGGAAACTTCAGATA+TGG + chr5.3:6602742-6602761 MS.gene54619:CDS 40.0%
CTTATCTGATCAAGTGGATG+TGG + chr5.3:6602283-6602302 MS.gene54619:CDS 40.0%
CTTGAAAAAGGAAGATCCTG+TGG + chr5.3:6602391-6602410 MS.gene54619:CDS 40.0%
CTTGTGTACTCAAAAATGGG+GGG + chr5.3:6604532-6604551 MS.gene54619:CDS 40.0%
GAAAGTAGTGCTAGGTTTGA+TGG + chr5.3:6603291-6603310 MS.gene54619:CDS 40.0%
GAACAAATATCAGATCCCCA+AGG - chr5.3:6603331-6603350 None:intergenic 40.0%
GAATTCTGTTAGGGTGATAC+GGG + chr5.3:6604134-6604153 MS.gene54619:CDS 40.0%
GAGTCATATTGGCAGGATAT+GGG + chr5.3:6604216-6604235 MS.gene54619:CDS 40.0%
GAGTCTACTTTGGCAAATGA+CGG + chr5.3:6602698-6602717 MS.gene54619:CDS 40.0%
GATAAAACTTCCAGAAGGGA+TGG - chr5.3:6604736-6604755 None:intergenic 40.0%
GCAGCAAATAACATGACATG+AGG - chr5.3:6605044-6605063 None:intergenic 40.0%
GCGTTGAAGATATTTCCTAC+GGG + chr5.3:6604352-6604371 MS.gene54619:CDS 40.0%
GCTTCAAAAGTGGAATTGGT+GGG + chr5.3:6602458-6602477 MS.gene54619:CDS 40.0%
GGGACAATATTGCAACAATC+AGG - chr5.3:6604462-6604481 None:intergenic 40.0%
GGTGATCATAAAGGACATTC+TGG - chr5.3:6605007-6605026 None:intergenic 40.0%
GTACACAAGAACATTTCTCG+TGG - chr5.3:6604521-6604540 None:intergenic 40.0%
TAATGAAGGGGAGAAGATCA+TGG + chr5.3:6603825-6603844 MS.gene54619:CDS 40.0%
TATGGTGTTCACAGCACATA+TGG - chr5.3:6604391-6604410 None:intergenic 40.0%
TCATCACAAACCGACATTGA+TGG - chr5.3:6601948-6601967 None:intergenic 40.0%
TCTCATCTCATCAAGTGGAT+GGG + chr5.3:6602414-6602433 MS.gene54619:CDS 40.0%
TGAACCTGCAAAAGTGGAAT+TGG + chr5.3:6602322-6602341 MS.gene54619:CDS 40.0%
TGAAGACTGTAGCTTGAGAA+AGG + chr5.3:6602511-6602530 MS.gene54619:CDS 40.0%
TGAAGTTGAGTCATATTGGC+AGG + chr5.3:6604209-6604228 MS.gene54619:CDS 40.0%
TGACTGTAGTTTGAAGAAGG+AGG + chr5.3:6602250-6602269 MS.gene54619:CDS 40.0%
TGAGTCATATTGGCAGGATA+TGG + chr5.3:6604215-6604234 MS.gene54619:CDS 40.0%
TGCAATATTGTCCCTCCAAA+AGG + chr5.3:6604468-6604487 MS.gene54619:CDS 40.0%
TTATAAACCAGCTTCCCATG+TGG - chr5.3:6604243-6604262 None:intergenic 40.0%
TTCTACAAACAGCTTGGAAC+AGG - chr5.3:6603702-6603721 None:intergenic 40.0%
TTGTGTACTCAAAAATGGGG+GGG + chr5.3:6604533-6604552 MS.gene54619:CDS 40.0%
! AACTAGTATTGTTGCTTCCG+GGG + chr5.3:6603972-6603991 MS.gene54619:CDS 40.0%
! AGATTTAGGTGGTGGTGATT+CGG + chr5.3:6602136-6602155 MS.gene54619:CDS 40.0%
! CAACTAGTATTGTTGCTTCC+GGG + chr5.3:6603971-6603990 MS.gene54619:CDS 40.0%
! GCAACTAGTATTGTTGCTTC+CGG + chr5.3:6603970-6603989 MS.gene54619:CDS 40.0%
! GTACAATTACAGCCTTTTGG+AGG - chr5.3:6604483-6604502 None:intergenic 40.0%
! TAGAAAGCTTTTGCAGGAAG+CGG + chr5.3:6603717-6603736 MS.gene54619:CDS 40.0%
! TCAAGTGGATGGGGATATTT+TGG + chr5.3:6602424-6602443 MS.gene54619:CDS 40.0%
! TTCTGCTGTTCGTGATTTTC+CGG + chr5.3:6602055-6602074 MS.gene54619:CDS 40.0%
!! AGCTGATTTTGAAGGGAATG+CGG + chr5.3:6603102-6603121 MS.gene54619:CDS 40.0%
!! AGTTGATTTTTATGCCCACC+TGG + chr5.3:6603405-6603424 MS.gene54619:CDS 40.0%
!! ATACTGCTTTTGTGGTTCTG+TGG + chr5.3:6605154-6605173 MS.gene54619:CDS 40.0%
!! ATGAGTGTTGAGGTTAAGAG+TGG + chr5.3:6602110-6602129 MS.gene54619:CDS 40.0%
!! TGCTTTGAAGAATAGTAGCG+AGG + chr5.3:6604107-6604126 MS.gene54619:CDS 40.0%
!! TGTGGTCTTATCTGATCAAG+TGG + chr5.3:6602277-6602296 MS.gene54619:CDS 40.0%
!!! AACGCTGCAACTTTTTTACG+AGG - chr5.3:6602935-6602954 None:intergenic 40.0%
!!! CTCTTTTCTTTTTCAACGGC+TGG - chr5.3:6603483-6603502 None:intergenic 40.0%
AAAACTGCGACCAAGTCCAA+AGG + chr5.3:6603436-6603455 MS.gene54619:CDS 45.0%
AAGATCATGGGATCTGTTCC+TGG + chr5.3:6603838-6603857 MS.gene54619:CDS 45.0%
AAGCCTCTAGTCTATGAGTG+TGG + chr5.3:6604594-6604613 MS.gene54619:CDS 45.0%
ACCTGCAAAAGTGGAATTGG+TGG + chr5.3:6602325-6602344 MS.gene54619:CDS 45.0%
ACTTGATGAGATGAGACCAC+AGG - chr5.3:6602410-6602429 None:intergenic 45.0%
AGAATTAGGGAAGCCAGTGA+TGG + chr5.3:6601980-6601999 MS.gene54619:CDS 45.0%
AGATCATGGGATCTGTTCCT+GGG + chr5.3:6603839-6603858 MS.gene54619:CDS 45.0%
AGCCTCTAGTCTATGAGTGT+GGG + chr5.3:6604595-6604614 MS.gene54619:CDS 45.0%
AGTAGTTTGAAGGTCTCACC+AGG + chr5.3:6603265-6603284 MS.gene54619:CDS 45.0%
AGTGGTGAAGATTTAGGTGG+TGG + chr5.3:6602128-6602147 MS.gene54619:CDS 45.0%
ATCCGCCTAAGTTTAAGCGT+CGG + chr5.3:6602027-6602046 MS.gene54619:CDS 45.0%
ATCGTAAGTCAGCTCTTGCA+AGG - chr5.3:6605081-6605100 None:intergenic 45.0%
ATTCTGGGCATAGAGATTGG+GGG - chr5.3:6604991-6605010 None:intergenic 45.0%
CAACGATGAACCTGCAAAAG+TGG + chr5.3:6602316-6602335 MS.gene54619:CDS 45.0%
CATGAACATCGTTAAGGTCG+AGG + chr5.3:6603204-6603223 MS.gene54619:CDS 45.0%
CATTCTGGGCATAGAGATTG+GGG - chr5.3:6604992-6605011 None:intergenic 45.0%
CCTGCAAAAGTGGAATTGGT+GGG + chr5.3:6602326-6602345 MS.gene54619:CDS 45.0%
CGTTCAAGCTTCTGATCTTC+TGG - chr5.3:6604078-6604097 None:intergenic 45.0%
CTCATCTCATCAAGTGGATG+GGG + chr5.3:6602415-6602434 MS.gene54619:CDS 45.0%
CTTGAACTTGAGTGCGAATC+TGG - chr5.3:6604888-6604907 None:intergenic 45.0%
CTTGAGAAAGGAAGATCCCA+TGG + chr5.3:6602523-6602542 MS.gene54619:CDS 45.0%
GAAGATCAGAAGCTTGAACG+GGG + chr5.3:6604078-6604097 MS.gene54619:CDS 45.0%
GAATTCGGAGCCATCAATGT+CGG + chr5.3:6601935-6601954 MS.gene54619:CDS 45.0%
GACATTCTGGGCATAGAGAT+TGG - chr5.3:6604994-6605013 None:intergenic 45.0%
GAGTCTCCATTTACCATCAC+TGG - chr5.3:6601996-6602015 None:intergenic 45.0%
GATCAAGTTCGTGATTCCGA+TGG + chr5.3:6605116-6605135 MS.gene54619:CDS 45.0%
GCCAATCTCATCTCAGTAGA+TGG - chr5.3:6603151-6603170 None:intergenic 45.0%
GCGAGGTCAAGAATTCTGTT+AGG + chr5.3:6604124-6604143 MS.gene54619:CDS 45.0%
GGAAGCTGTGGATATGGAAT+TGG + chr5.3:6602484-6602503 MS.gene54619:CDS 45.0%
GTCTCATCTCATCAAGTGGA+TGG + chr5.3:6602413-6602432 MS.gene54619:CDS 45.0%
TACTGAGATGAGATTGGCAC+TGG + chr5.3:6603153-6603172 MS.gene54619:CDS 45.0%
TCCAGAAGGGATGGAATTCA+AGG - chr5.3:6604727-6604746 None:intergenic 45.0%
TCCTTGAATTCCATCCCTTC+TGG + chr5.3:6604723-6604742 MS.gene54619:CDS 45.0%
TCGTAAGTCAGCTCTTGCAA+GGG - chr5.3:6605080-6605099 None:intergenic 45.0%
TCTGTACCACCAATGGATGT+TGG - chr5.3:6603367-6603386 None:intergenic 45.0%
TGATAGTCCCAACGACGAAA+AGG + chr5.3:6602166-6602185 MS.gene54619:CDS 45.0%
TGTGGTCTCATCTCATCAAG+TGG + chr5.3:6602409-6602428 MS.gene54619:CDS 45.0%
TTCCGACGCTTAAACTTAGG+CGG - chr5.3:6602032-6602051 None:intergenic 45.0%
TTGAGTGCGAATCTGGCAAA+AGG - chr5.3:6604881-6604900 None:intergenic 45.0%
TTGATATATACAGGGCAGGG+TGG + chr5.3:6604027-6604046 MS.gene54619:CDS 45.0%
TTTGAAGAAGGAGGATCCTG+TGG + chr5.3:6602259-6602278 MS.gene54619:CDS 45.0%
! AAAACTGACATTGGTGGGCA+TGG + chr5.3:6602595-6602614 MS.gene54619:CDS 45.0%
! AAAAGTGGAATTGGTGGGCA+TGG + chr5.3:6602463-6602482 MS.gene54619:CDS 45.0%
! ACTAGTATTGTTGCTTCCGG+GGG + chr5.3:6603973-6603992 MS.gene54619:CDS 45.0%
! ATTTTTATGCCCACCTGGAC+AGG + chr5.3:6603410-6603429 MS.gene54619:CDS 45.0%
! CACTTTTGCAGGTTCATCGT+TGG - chr5.3:6602318-6602337 None:intergenic 45.0%
! CGTGATTTTCCGGAAGAATG+TGG + chr5.3:6602065-6602084 MS.gene54619:CDS 45.0%
! GATTTAGGTGGTGGTGATTC+GGG + chr5.3:6602137-6602156 MS.gene54619:CDS 45.0%
! GGCACTGGATAATCATCATC+AGG + chr5.3:6603168-6603187 MS.gene54619:CDS 45.0%
! GGGAATTTTCTCTTTCCCGT+AGG - chr5.3:6604370-6604389 None:intergenic 45.0%
! GTTCTGTGGAATGTACTGGT+AGG + chr5.3:6605168-6605187 MS.gene54619:CDS 45.0%
! TGAGGATCCTTTTCGTCGTT+GGG - chr5.3:6602176-6602195 None:intergenic 45.0%
! TGCTGATGGTATGAGTGTTG+AGG + chr5.3:6602100-6602119 MS.gene54619:CDS 45.0%
! TGTGGTTCTGTGGAATGTAC+TGG + chr5.3:6605164-6605183 MS.gene54619:CDS 45.0%
! TTGAGGATCCTTTTCGTCGT+TGG - chr5.3:6602177-6602196 None:intergenic 45.0%
!! AAAAGTGTCCCAAAACCACG+TGG + chr5.3:6603586-6603605 MS.gene54619:CDS 45.0%
!!! AGTTTTAGACCTGTCCAGGT+GGG - chr5.3:6603422-6603441 None:intergenic 45.0%
!!! GCTGCAACTTTTTTACGAGG+AGG - chr5.3:6602932-6602951 None:intergenic 45.0%
ACTATCGATGCCGCTCAGTT+CGG + chr5.3:6604933-6604952 MS.gene54619:CDS 50.0%
AGAGATTGGGGGAGCAACTA+TGG - chr5.3:6604980-6604999 None:intergenic 50.0%
AGCCTCCTTCATACAAGCAC+CGG - chr5.3:6602894-6602913 None:intergenic 50.0%
AGGGGGGTTCTCTTCATCTA+TGG - chr5.3:6604409-6604428 None:intergenic 50.0%
AGTACCTTCCAAGCAAGCTC+TGG - chr5.3:6604294-6604313 None:intergenic 50.0%
CATGAGGAACCCTGTTGTCA+TGG - chr5.3:6605028-6605047 None:intergenic 50.0%
CCAAACGGTCCACATTCTTC+CGG - chr5.3:6602077-6602096 None:intergenic 50.0%
CCCTACATTACCGAACTGAG+CGG - chr5.3:6604946-6604965 None:intergenic 50.0%
CCGCTCAGTTCGGTAATGTA+GGG + chr5.3:6604943-6604962 MS.gene54619:CDS 50.0%
CCTGTCATCTGTACCACCAA+TGG - chr5.3:6603374-6603393 None:intergenic 50.0%
GATACGGGGATCTGAATCAG+CGG + chr5.3:6604149-6604168 MS.gene54619:CDS 50.0%
GATCATGGGATCTGTTCCTG+GGG + chr5.3:6603840-6603859 MS.gene54619:CDS 50.0%
GCATTGCGTCCACATAAACG+TGG - chr5.3:6602968-6602987 None:intergenic 50.0%
GCCAAGTCAGAATGTCCTTG+GGG + chr5.3:6603313-6603332 MS.gene54619:CDS 50.0%
GGAGACTTTGGATGCGGAAT+TGG + chr5.3:6602616-6602635 MS.gene54619:CDS 50.0%
GGCCAAGTCAGAATGTCCTT+GGG + chr5.3:6603312-6603331 MS.gene54619:CDS 50.0%
GGGAAGCCAGTGATGGTAAA+TGG + chr5.3:6601987-6602006 MS.gene54619:CDS 50.0%
GGTGGTACAGATGACAGGAA+GGG + chr5.3:6603376-6603395 MS.gene54619:CDS 50.0%
GTTTCGCTTGCGAAGAAAGC+CGG + chr5.3:6604263-6604282 MS.gene54619:CDS 50.0%
TAAGTCAGCTCTTGCAAGGG+AGG - chr5.3:6605077-6605096 None:intergenic 50.0%
TAAGTCATCAGCATAGCCCC+CGG - chr5.3:6603992-6604011 None:intergenic 50.0%
TCATCACCAACTTCAACCCC+AGG - chr5.3:6603859-6603878 None:intergenic 50.0%
TCCCCAAGGACATTCTGACT+TGG - chr5.3:6603317-6603336 None:intergenic 50.0%
TCTGTTCCTGGGGTTGAAGT+TGG + chr5.3:6603850-6603869 MS.gene54619:CDS 50.0%
TGGAGAGGTTCTTGAGGACA+AGG + chr5.3:6604767-6604786 MS.gene54619:CDS 50.0%
TGGCCAAGTCAGAATGTCCT+TGG + chr5.3:6603311-6603330 MS.gene54619:CDS 50.0%
TGGTCATGAGAGTGACTCAG+TGG + chr5.3:6603648-6603667 MS.gene54619:CDS 50.0%
TGGTGGTACAGATGACAGGA+AGG + chr5.3:6603375-6603394 MS.gene54619:CDS 50.0%
TGGTTCCGGTGCTTGTATGA+AGG + chr5.3:6602886-6602905 MS.gene54619:CDS 50.0%
TTCCGGTGCTTGTATGAAGG+AGG + chr5.3:6602889-6602908 MS.gene54619:CDS 50.0%
TTTCGCTTGCGAAGAAAGCC+GGG + chr5.3:6604264-6604283 MS.gene54619:CDS 50.0%
! ATTGGTGGGCATGGAGACTT+TGG + chr5.3:6602604-6602623 MS.gene54619:CDS 50.0%
! ATTGGTGGGCGTAGAAGCTA+TGG + chr5.3:6602340-6602359 MS.gene54619:CDS 50.0%
! CCATTGGTGGTACAGATGAC+AGG + chr5.3:6603371-6603390 MS.gene54619:CDS 50.0%
! TACACCCCATCCCATTGACT+TGG - chr5.3:6604700-6604719 None:intergenic 50.0%
! TCAACCAGAGCTTGCTTGGA+AGG + chr5.3:6604287-6604306 MS.gene54619:CDS 50.0%
!! AAATGACGGACCTGCAGAAC+TGG + chr5.3:6602712-6602731 MS.gene54619:CDS 50.0%
!! AGAACTGGCATTGGTCGGTA+TGG + chr5.3:6602727-6602746 MS.gene54619:CDS 50.0%
!! CCCACCAATTCCACTTTTGC+AGG - chr5.3:6602329-6602348 None:intergenic 50.0%
!! GTTGGAGGGCACTTGCATTT+AGG - chr5.3:6604621-6604640 None:intergenic 50.0%
!!! CAGTTTTAGACCTGTCCAGG+TGG - chr5.3:6603423-6603442 None:intergenic 50.0%
!!! TCGCAGTTTTAGACCTGTCC+AGG - chr5.3:6603426-6603445 None:intergenic 50.0%
AGGGAATGCGGTCAAGAAGC+TGG + chr5.3:6603114-6603133 MS.gene54619:CDS 55.0%
ATGAGAGTGACTCAGTGGCC+CGG + chr5.3:6603653-6603672 MS.gene54619:CDS 55.0%
CACCCTGAATCTGGCGATGA+AGG - chr5.3:6603915-6603934 None:intergenic 55.0%
CAGCCAGGATGAGCGTCTAA+AGG + chr5.3:6602997-6603016 MS.gene54619:CDS 55.0%
CAGTGGCCCGGAATAAAGTG+AGG + chr5.3:6603665-6603684 MS.gene54619:CDS 55.0%
CCAGGCAGGAAAGTAGTGCT+AGG + chr5.3:6603283-6603302 MS.gene54619:CDS 55.0%
CCGGAAGAATGTGGACCGTT+TGG + chr5.3:6602074-6602093 MS.gene54619:CDS 55.0%
CCTAGCACTACTTTCCTGCC+TGG - chr5.3:6603286-6603305 None:intergenic 55.0%
CTTCATCGCCAGATTCAGGG+TGG + chr5.3:6603913-6603932 MS.gene54619:CDS 55.0%
GACATAGCTACCTCGCCAAC+TGG - chr5.3:6602827-6602846 None:intergenic 55.0%
GCCGCTCAGTTCGGTAATGT+AGG + chr5.3:6604942-6604961 MS.gene54619:CDS 55.0%
GCTCCTTTAGACGCTCATCC+TGG - chr5.3:6603003-6603022 None:intergenic 55.0%
GGCCCACACTCATAGACTAG+AGG - chr5.3:6604600-6604619 None:intergenic 55.0%
GGCCTTCATCGCCAGATTCA+GGG + chr5.3:6603910-6603929 MS.gene54619:CDS 55.0%
GGGCATGGAAGCTGTGGATA+TGG + chr5.3:6602478-6602497 MS.gene54619:CDS 55.0%
GGGCATGGAGACTTTGGATG+CGG + chr5.3:6602610-6602629 MS.gene54619:CDS 55.0%
GTTTGAAGGTCTCACCAGGC+AGG + chr5.3:6603269-6603288 MS.gene54619:CDS 55.0%
TGGCCTTCATCGCCAGATTC+AGG + chr5.3:6603909-6603928 MS.gene54619:CDS 55.0%
! ATTGGTGGGCATGGAAGCTG+TGG + chr5.3:6602472-6602491 MS.gene54619:CDS 55.0%
! CAAGCAAGCTCTGGTTGACC+CGG - chr5.3:6604285-6604304 None:intergenic 55.0%
!! CCTGCAGAACTGGCATTGGT+CGG + chr5.3:6602722-6602741 MS.gene54619:CDS 55.0%
!! GGACCGTTTGGTTCTGCTGA+TGG + chr5.3:6602086-6602105 MS.gene54619:CDS 55.0%
ACGCTCATCCTGGCTGAGAC+GGG - chr5.3:6602993-6603012 None:intergenic 60.0%
CCGACCAATGCCAGTTCTGC+AGG - chr5.3:6602725-6602744 None:intergenic 60.0%
CGGACCTGCAGAACTGGCAT+TGG + chr5.3:6602718-6602737 MS.gene54619:CDS 60.0%
CGGGGATCTGAATCAGCGGA+TGG + chr5.3:6604153-6604172 MS.gene54619:CDS 60.0%
GACGCTCATCCTGGCTGAGA+CGG - chr5.3:6602994-6603013 None:intergenic 60.0%
GGCAGGATATGGGGCCACAT+GGG + chr5.3:6604226-6604245 MS.gene54619:CDS 60.0%
TATGGGGCCACATGGGAAGC+TGG + chr5.3:6604233-6604252 MS.gene54619:CDS 60.0%
TGGCAGGATATGGGGCCACA+TGG + chr5.3:6604225-6604244 MS.gene54619:CDS 60.0%
! CGGGTCAACCAGAGCTTGCT+TGG + chr5.3:6604283-6604302 MS.gene54619:CDS 60.0%
CAATGCTCCCCGTCTCAGCC+AGG + chr5.3:6602982-6603001 MS.gene54619:CDS 65.0%
CGCTCATCCTGGCTGAGACG+GGG - chr5.3:6602992-6603011 None:intergenic 65.0%
GCTACCTCGCCAACTGGAGC+CGG - chr5.3:6602821-6602840 None:intergenic 65.0%
!! TCAGAGGCACCGGCTCCAGT+TGG + chr5.3:6602809-6602828 MS.gene54619:CDS 65.0%
!! GGCACCGGCTCCAGTTGGCG+AGG + chr5.3:6602814-6602833 MS.gene54619:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 6601933 6605199 6601933 ID=MS.gene54619
chr5.3 mRNA 6601933 6605199 6601933 ID=MS.gene54619.t1;Parent=MS.gene54619
chr5.3 exon 6601933 6605199 6601933 ID=MS.gene54619.t1.exon1;Parent=MS.gene54619.t1
chr5.3 CDS 6601933 6605199 6601933 ID=cds.MS.gene54619.t1;Parent=MS.gene54619.t1
Gene Sequence

>MS.gene54619

ATGAATTCGGAGCCATCAATGTCGGTTTGTGATGAACATTCTGAAGAAGAATTAGGGAAGCCAGTGATGGTAAATGGAGACTCAACTATTGTTGATCCGCCTAAGTTTAAGCGTCGGAAAGTTTCTGCTGTTCGTGATTTTCCGGAAGAATGTGGACCGTTTGGTTCTGCTGATGGTATGAGTGTTGAGGTTAAGAGTGGTGAAGATTTAGGTGGTGGTGATTCGGGTGAAGCTGATAGTCCCAACGACGAAAAGGATCCTCAAAATTTTGAGTTCAATGAAGATTTGTTTGTTGCAGACACTGTTGAACAAACAAGTGACTGTAGTTTGAAGAAGGAGGATCCTGTGGTCTTATCTGATCAAGTGGATGTGGGTAGTTTTGCCAACGATGAACCTGCAAAAGTGGAATTGGTGGGCGTAGAAGCTATGGATATTAGTTTTGAAACTGAAGACTGTAGCTTGAAAAAGGAAGATCCTGTGGTCTCATCTCATCAAGTGGATGGGGATATTTTGGTTAACAATGAAGCTTCAAAAGTGGAATTGGTGGGCATGGAAGCTGTGGATATGGAATTGGAAACTGAAGACTGTAGCTTGAGAAAGGAAGATCCCATGGTCTCATCTCATCAATTGGATGTGCCTATTTTGGATAATAACGAAGATACAAAACTGACATTGGTGGGCATGGAGACTTTGGATGCGGAATTGGCAACTGAAAGCTGTAGTTTGAAGAACGAAAATGCAGCGATCTTATCTTATCAAATTGATGAGTCTACTTTGGCAAATGACGGACCTGCAGAACTGGCATTGGTCGGTATGGAAACTTCAGATATGGAATTTACAACAGAAGGCTCCGTAAAACAAGATTTATCTTATATATCAGAGGCACCGGCTCCAGTTGGCGAGGTAGCTATGTCTGATAACTCAAAATCCTCATTGTCCAATATCAATATAGGTGGTTCCGGTGCTTGTATGAAGGAGGCTTTAACTAAAAGGTATCCTCCTCGTAAAAAAGTTGCAGCGTTAAGAGATTTTCCACGTTTATGTGGACGCAATGCTCCCCGTCTCAGCCAGGATGAGCGTCTAAAGGAGCTCGCTTCTTTGAAAGAAGTTGCAGCTACTGACCTACAAGAAGCAGAAAATAACAAAAGAAAGTTTGCCAACTTTGTTGAAGCTGATTTTGAAGGGAATGCGGTCAAGAAGCTGGATGTAGCTGAACCATCTACTGAGATGAGATTGGCACTGGATAATCATCATCAGGTTAAAGTGGAAAACATGAACATCGTTAAGGTCGAGGGAACATCAGAGCTAGATATTGATTACCCAGAACTCGAAAGTAGTTTGAAGGTCTCACCAGGCAGGAAAGTAGTGCTAGGTTTGATGGCCAAGTCAGAATGTCCTTGGGGATCTGATATTTGTTCCCCCAAATTTAAACCAACATCCATTGGTGGTACAGATGACAGGAAGGGAAAGAAAGTTGATTTTTATGCCCACCTGGACAGGTCTAAAACTGCGACCAAGTCCAAAGGTGTACTAAATCATTCTGGGCACCAGCCGTTGAAAAAGAAAAGAGAAAATTCTAGTTCTGATGACATGGGTCAATTAGTAACACGGGAGAAGAATTCTCTAGATCCTAATGAAAATAACAAACACTTTAAAAGTGTCCCAAAACCACGTGGTTATGTAAATGTTTTTCCTCTTGGTCGTAGTAATTTAAGTGGTCATGAGAGTGACTCAGTGGCCCGGAATAAAGTGAGGAAAACATTGCGCCTGTTCCAAGCTGTTTGTAGAAAGCTTTTGCAGGAAGCGGAAGCAAAACCAAAGTCAAATGTGAAAGAATCAAAGAGGGTTGATTTACAAGCTTCAAAAATACTTAAGGAGAAAGGGAGCTATGTTAATGAAGGGGAGAAGATCATGGGATCTGTTCCTGGGGTTGAAGTTGGTGATGAATTTCAATACAGAATAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATATGAAGCAAAAAAACAAGGTCCTTGCAACTAGTATTGTTGCTTCCGGGGGCTATGCTGATGACTTAGATAATGCAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGAGCCAGAAGATCAGAAGCTTGAACGGGGCAATCTTGCTTTGAAGAATAGTAGCGAGGTCAAGAATTCTGTTAGGGTGATACGGGGATCTGAATCAGCGGATGGAAAAAGCAAGATATATGTTTACGATGGACTCTATGAAGTTGAGTCATATTGGCAGGATATGGGGCCACATGGGAAGCTGGTTTATAAGTTTCGCTTGCGAAGAAAGCCGGGTCAACCAGAGCTTGCTTGGAAGGTACTGAAGAAATCTAAAAAGTTCAAAAAAAGAGAAGGTGTACGCGTTGAAGATATTTCCTACGGGAAAGAGAAAATTCCCATATGTGCTGTGAACACCATAGATGAAGAGAACCCCCCTCCATTTAAATACATAACTAAGATGATGTATCCTGATTGTTGCAATATTGTCCCTCCAAAAGGCTGTAATTGTACTAATGGATGCTCTGACCACGAGAAATGTTCTTGTGTACTCAAAAATGGGGGGGAGATTCCATTTAATCATAATGGAGCTATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGGCCTAAATGCAAGTGCCCTCCAACTTGTTATAATAGAGTCAGCCAACTTGGCATAAATATTCAACTCGAAATTTTTAAAACCAAGTCAATGGGATGGGGTGTAAGATCCTTGAATTCCATCCCTTCTGGAAGTTTTATCTGTGAATATATTGGAGAGGTTCTTGAGGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACAAAAACAACAGTAATCTTTGGGATGGACTTTCGAACCTTTTGCCAGATTCGCACTCAAGTTCAAGTGAAGTAGTGAATGATGTTGGCTTCACTATCGATGCCGCTCAGTTCGGTAATGTAGGGAGATTCATTAACCATAGTTGCTCCCCCAATCTCTATGCCCAGAATGTCCTTTATGATCACCATGACAACAGGGTTCCTCATGTCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGACTTACGATTACAATTACACGATAGATCAAGTTCGTGATTCCGATGGCAATATCAAAAAGAAATACTGCTTTTGTGGTTCTGTGGAATGTACTGGTAGGTTGTATTGA
Protein sequence

>MS.gene54619.t1

MNSEPSMSVCDEHSEEELGKPVMVNGDSTIVDPPKFKRRKVSAVRDFPEECGPFGSADGMSVEVKSGEDLGGGDSGEADSPNDEKDPQNFEFNEDLFVADTVEQTSDCSLKKEDPVVLSDQVDVGSFANDEPAKVELVGVEAMDISFETEDCSLKKEDPVVSSHQVDGDILVNNEASKVELVGMEAVDMELETEDCSLRKEDPMVSSHQLDVPILDNNEDTKLTLVGMETLDAELATESCSLKNENAAILSYQIDESTLANDGPAELALVGMETSDMEFTTEGSVKQDLSYISEAPAPVGEVAMSDNSKSSLSNINIGGSGACMKEALTKRYPPRKKVAALRDFPRLCGRNAPRLSQDERLKELASLKEVAATDLQEAENNKRKFANFVEADFEGNAVKKLDVAEPSTEMRLALDNHHQVKVENMNIVKVEGTSELDIDYPELESSLKVSPGRKVVLGLMAKSECPWGSDICSPKFKPTSIGGTDDRKGKKVDFYAHLDRSKTATKSKGVLNHSGHQPLKKKRENSSSDDMGQLVTREKNSLDPNENNKHFKSVPKPRGYVNVFPLGRSNLSGHESDSVARNKVRKTLRLFQAVCRKLLQEAEAKPKSNVKESKRVDLQASKILKEKGSYVNEGEKIMGSVPGVEVGDEFQYRIELNIIGLHRQIQGGIDYMKQKNKVLATSIVASGGYADDLDNADVLIYTGQGGNVMSSDKEPEDQKLERGNLALKNSSEVKNSVRVIRGSESADGKSKIYVYDGLYEVESYWQDMGPHGKLVYKFRLRRKPGQPELAWKVLKKSKKFKKREGVRVEDISYGKEKIPICAVNTIDEENPPPFKYITKMMYPDCCNIVPPKGCNCTNGCSDHEKCSCVLKNGGEIPFNHNGAIVEAKPLVYECGPKCKCPPTCYNRVSQLGINIQLEIFKTKSMGWGVRSLNSIPSGSFICEYIGEVLEDKEAEQRTGNDEYLFDIGNNKNNSNLWDGLSNLLPDSHSSSSEVVNDVGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDNRVPHVMLFAAENIPPLQELTYDYNYTIDQVRDSDGNIKKKYCFCGSVECTGRLY