Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55328.t1 | XP_003613966.1 | 97.8 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 1.60E-93 | 352.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55328.t1 | Q9M015 | 49.4 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 1.5e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55328.t1 | G7JWQ2 | 97.8 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 1.1e-93 | 352.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069002 | MS.gene55328 | PPI |
| MS.gene99505 | MS.gene55328 | PPI |
| MS.gene33453 | MS.gene55328 | PPI |
| MS.gene33706 | MS.gene55328 | PPI |
| MS.gene052793 | MS.gene55328 | PPI |
| MS.gene95675 | MS.gene55328 | PPI |
| MS.gene071033 | MS.gene55328 | PPI |
| MS.gene93374 | MS.gene55328 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55328.t1 | MTR_5g043190 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 6.75e-128 | 357 |
| MS.gene55328.t1 | MTR_4g109140 | 63.536 | 181 | 58 | 2 | 1 | 180 | 1 | 174 | 3.02e-80 | 236 |
| MS.gene55328.t1 | MTR_7g070000 | 50.000 | 180 | 80 | 2 | 1 | 180 | 1 | 170 | 1.67e-59 | 183 |
| MS.gene55328.t1 | MTR_4g014490 | 51.205 | 166 | 78 | 1 | 15 | 180 | 8 | 170 | 1.67e-59 | 183 |
| MS.gene55328.t1 | MTR_7g108775 | 39.759 | 83 | 48 | 2 | 63 | 144 | 33 | 114 | 5.36e-14 | 66.6 |
| MS.gene55328.t1 | MTR_7g108775 | 39.759 | 83 | 48 | 2 | 63 | 144 | 33 | 114 | 6.24e-14 | 67.0 |
| MS.gene55328.t1 | MTR_8g085590 | 32.432 | 111 | 71 | 4 | 63 | 171 | 33 | 141 | 1.44e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55328.t1 | AT2G03350 | 75.141 | 177 | 42 | 1 | 1 | 177 | 1 | 175 | 2.57e-95 | 274 |
| MS.gene55328.t1 | AT5G37070 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 8.19e-61 | 186 |
| MS.gene55328.t1 | AT3G08890 | 48.333 | 180 | 83 | 2 | 1 | 180 | 1 | 170 | 3.47e-59 | 182 |
| MS.gene55328.t1 | AT3G08890 | 48.333 | 180 | 83 | 2 | 1 | 180 | 1 | 170 | 3.47e-59 | 182 |
| MS.gene55328.t1 | AT5G01610 | 49.398 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 1.95e-58 | 181 |
| MS.gene55328.t1 | AT5G01610 | 49.398 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 1.95e-58 | 181 |
| MS.gene55328.t1 | AT4G02370 | 29.703 | 101 | 67 | 2 | 64 | 163 | 35 | 132 | 3.46e-13 | 64.7 |
| MS.gene55328.t1 | AT1G02816 | 25.893 | 112 | 77 | 3 | 64 | 172 | 35 | 143 | 5.48e-13 | 63.9 |
| MS.gene55328.t1 | AT5G16380 | 26.562 | 128 | 90 | 3 | 49 | 174 | 19 | 144 | 2.05e-12 | 63.2 |
Find 0 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATTAATCACATGAT+CGG | + | 57642:56010-56029 | None:intergenic | 15.0% |
| !! | TGAGTTTAAATTTAAATATC+AGG | - | 57642:56902-56921 | MS.gene55328:intron | 15.0% |
| !! | TTCTCAATATTACTAATAAA+TGG | + | 57642:56289-56308 | None:intergenic | 15.0% |
| !!! | ATACATTTTATTATGCTTTA+TGG | + | 57642:56328-56347 | None:intergenic | 15.0% |
| !!! | TAATTTATTTATTTTTGTCC+TGG | - | 57642:55865-55884 | MS.gene55328:intron | 15.0% |
| !!! | TTGTTATTTCATAAATTAGA+GGG | + | 57642:56976-56995 | None:intergenic | 15.0% |
| !!! | TTTGTTATTTCATAAATTAG+AGG | + | 57642:56977-56996 | None:intergenic | 15.0% |
| !!! | TTTTGGGTATATTAAAAAAA+TGG | - | 57642:55717-55736 | MS.gene55328:intron | 15.0% |
| !! | ATTGATGTTCCTTAATTTAA+GGG | + | 57642:57005-57024 | None:intergenic | 20.0% |
| !! | TTAAAATCAATGAAAAAACC+TGG | - | 57642:57067-57086 | MS.gene55328:intron | 20.0% |
| !! | TTACAAATCTGATAAGATTT+GGG | - | 57642:57741-57760 | MS.gene55328:CDS | 20.0% |
| !!! | ATTTTGCAAAACAATTCATT+CGG | - | 57642:55503-55522 | MS.gene55328:intron | 20.0% |
| !!! | GACCAAAAAATAGTTTTTTT+GGG | - | 57642:55701-55720 | MS.gene55328:intron | 20.0% |
| !!! | TACCCAAAAAAACTATTTTT+TGG | + | 57642:55706-55725 | None:intergenic | 20.0% |
| !!! | TATTAAAAAAATGGCCTTTT+TGG | - | 57642:55726-55745 | MS.gene55328:intron | 20.0% |
| !!! | TGACCAAAAAATAGTTTTTT+TGG | - | 57642:55700-55719 | MS.gene55328:intron | 20.0% |
| !!! | TTTGATGTTTCTTTAGTTTA+GGG | - | 57642:55625-55644 | MS.gene55328:intron | 20.0% |
| !!! | TTTTATTATGCTTTATGGTT+TGG | + | 57642:56323-56342 | None:intergenic | 20.0% |
| !!! | TTTTGATGTTTCTTTAGTTT+AGG | - | 57642:55624-55643 | MS.gene55328:intron | 20.0% |
| ! | AAAGATTATAATTTACCGCT+CGG | - | 57642:57496-57515 | MS.gene55328:intron | 25.0% |
| ! | AATTTCATTGAGAGATTACA+AGG | - | 57642:55925-55944 | MS.gene55328:intron | 25.0% |
| ! | ATTTCATTGAGAGATTACAA+GGG | - | 57642:55926-55945 | MS.gene55328:intron | 25.0% |
| ! | GAAAACAAAAGTTCTTGTAT+GGG | - | 57642:57690-57709 | MS.gene55328:intron | 25.0% |
| ! | GATTATTCAAATCAATATCC+AGG | + | 57642:57088-57107 | None:intergenic | 25.0% |
| ! | GATTGATGTTCCTTAATTTA+AGG | + | 57642:57006-57025 | None:intergenic | 25.0% |
| ! | GCTAAATATAAATTGATCCA+AGG | + | 57642:55464-55483 | None:intergenic | 25.0% |
| ! | GTTACAAATCTGATAAGATT+TGG | - | 57642:57740-57759 | MS.gene55328:CDS | 25.0% |
| ! | TATTCCTCAAAGATTTGAAT+AGG | - | 57642:55122-55141 | MS.gene55328:CDS | 25.0% |
| ! | TGAAAACAAAAGTTCTTGTA+TGG | - | 57642:57689-57708 | MS.gene55328:intron | 25.0% |
| ! | TTCCATAAATGAATATGCAA+TGG | - | 57642:55656-55675 | MS.gene55328:intron | 25.0% |
| ! | TTGATTGTAGTGCTAAAATT+TGG | - | 57642:57139-57158 | MS.gene55328:intron | 25.0% |
| ! | TTTCAACAAACTAAAAGGTA+TGG | - | 57642:56478-56497 | MS.gene55328:intron | 25.0% |
| !! | AAAATTGATTCCTCTGAAAA+TGG | + | 57642:55169-55188 | None:intergenic | 25.0% |
| !! | AAATTGATTTCGACTTAAAG+TGG | + | 57642:55487-55506 | None:intergenic | 25.0% |
| !! | AATTGATTTCGACTTAAAGT+GGG | + | 57642:55486-55505 | None:intergenic | 25.0% |
| !! | TCATAACAGATTATGTTTTG+AGG | + | 57642:57529-57548 | None:intergenic | 25.0% |
| !! | TTTTTACCTTTCTAAGTCAT+AGG | - | 57642:55817-55836 | MS.gene55328:intron | 25.0% |
| !!! | ACAATGTTTTTGCTGATATA+AGG | - | 57642:56402-56421 | MS.gene55328:intron | 25.0% |
| !!! | ATTTTAGCACTACAATCAAA+AGG | + | 57642:57138-57157 | None:intergenic | 25.0% |
| !!! | TCCATGATGTTATTTCTAAA+TGG | - | 57642:56042-56061 | MS.gene55328:intron | 25.0% |
| AAACAAGCTTAGTATGTGTT+TGG | + | 57642:55552-55571 | None:intergenic | 30.0% | |
| AAGATTATAATTTACCGCTC+GGG | - | 57642:57497-57516 | MS.gene55328:intron | 30.0% | |
| AGCAGTCTATTTGAATCAAT+TGG | + | 57642:56564-56583 | None:intergenic | 30.0% | |
| ATCTCCTATTCAAATCTTTG+AGG | + | 57642:55129-55148 | None:intergenic | 30.0% | |
| CAAATCAGTCCCTTAAATTA+AGG | - | 57642:56993-57012 | MS.gene55328:intron | 30.0% | |
| CATGAAAAACTTATTATCGC+AGG | + | 57642:56672-56691 | None:intergenic | 30.0% | |
| CTAGGCAGTTATTATTTCAA+TGG | - | 57642:57361-57380 | MS.gene55328:intron | 30.0% | |
| CTTGATTGATGCAAAATTCT+TGG | + | 57642:56141-56160 | None:intergenic | 30.0% | |
| GAAAAAATGCATAAACTCAC+TGG | + | 57642:56526-56545 | None:intergenic | 30.0% | |
| GCCATTTAGAAATAACATCA+TGG | + | 57642:56046-56065 | None:intergenic | 30.0% | |
| GCGGTAAATTATAATCTTTG+AGG | + | 57642:57495-57514 | None:intergenic | 30.0% | |
| GTCCATTGCATATTCATTTA+TGG | + | 57642:55661-55680 | None:intergenic | 30.0% | |
| TATGATCTTCAAATTTGCGA+GGG | + | 57642:57246-57265 | None:intergenic | 30.0% | |
| TGATTCCTCTAAACCAATTT+GGG | + | 57642:55306-55325 | None:intergenic | 30.0% | |
| TTAGTATGTGTTTGGTTATG+CGG | + | 57642:55544-55563 | None:intergenic | 30.0% | |
| TTATGATCTTCAAATTTGCG+AGG | + | 57642:57247-57266 | None:intergenic | 30.0% | |
| TTGATTCCTCTAAACCAATT+TGG | + | 57642:55307-55326 | None:intergenic | 30.0% | |
| ! | AAAAGTTCTTGTATGGGTTA+AGG | - | 57642:57696-57715 | MS.gene55328:intron | 30.0% |
| ! | AATCAACCTTGGATTAGAAT+TGG | - | 57642:55062-55081 | MS.gene55328:CDS | 30.0% |
| ! | AGAGGAATCAAATTGATTCT+TGG | - | 57642:55316-55335 | MS.gene55328:intron | 30.0% |
| ! | TCTGAAAGATCCAAATTTTC+AGG | + | 57642:55770-55789 | None:intergenic | 30.0% |
| ! | TGGGTTTTCAACAAACTAAA+AGG | - | 57642:56473-56492 | MS.gene55328:intron | 30.0% |
| ! | TTATAATCTTTGAGGAGATC+TGG | + | 57642:57487-57506 | None:intergenic | 30.0% |
| !! | AATGAATGAAGTCATTTTCC+AGG | + | 57642:55886-55905 | None:intergenic | 30.0% |
| !! | ATTGTTTGTTTTCAAACTGC+AGG | + | 57642:55962-55981 | None:intergenic | 30.0% |
| !! | CTTGGTCTTTGAAATTGTAA+GGG | - | 57642:56936-56955 | MS.gene55328:intron | 30.0% |
| !! | TAGTTTGTTGAAAACCCATT+TGG | + | 57642:56471-56490 | None:intergenic | 30.0% |
| !! | TCTTGGTCTTTGAAATTGTA+AGG | - | 57642:56935-56954 | MS.gene55328:intron | 30.0% |
| !! | TTGTTTGTTTTCAAACTGCA+GGG | + | 57642:55961-55980 | None:intergenic | 30.0% |
| !!! | ACATACTAAGCTTGTTTTAG+TGG | - | 57642:55555-55574 | MS.gene55328:intron | 30.0% |
| !!! | CTACAATTGATTTTTAGCCT+TGG | - | 57642:55444-55463 | MS.gene55328:intron | 30.0% |
| !!! | GTTCTTTTTTCCCTTTAATG+TGG | - | 57642:54950-54969 | MS.gene55328:CDS | 30.0% |
| AAGCTACATATGACATGTAG+AGG | + | 57642:56075-56094 | None:intergenic | 35.0% | |
| AATGGAAACTTCCCATGAAA+AGG | + | 57642:54999-55018 | None:intergenic | 35.0% | |
| ACCCAAAAAAGCCACATTAA+AGG | + | 57642:54964-54983 | None:intergenic | 35.0% | |
| ACGAAAACCATTCGTTTGAA+TGG | - | 57642:56356-56375 | MS.gene55328:intron | 35.0% | |
| AGTAACACTAACACCAAACA+GGG | + | 57642:56382-56401 | None:intergenic | 35.0% | |
| AGTCACATCTCTGTAACTTA+TGG | + | 57642:57312-57331 | None:intergenic | 35.0% | |
| ATAAACTCACTGGAACATCT+AGG | + | 57642:56516-56535 | None:intergenic | 35.0% | |
| ATAAGTTACAGAGATGTGAC+TGG | - | 57642:57311-57330 | MS.gene55328:intron | 35.0% | |
| ATATGACATGTAGAGGATCA+TGG | + | 57642:56068-56087 | None:intergenic | 35.0% | |
| ATGGAAACTTCCCATGAAAA+GGG | + | 57642:54998-55017 | None:intergenic | 35.0% | |
| ATGTGTTGTCTACTACTCTA+TGG | - | 57642:56241-56260 | MS.gene55328:intron | 35.0% | |
| CAAGTACCAATTCTAATCCA+AGG | + | 57642:55071-55090 | None:intergenic | 35.0% | |
| CCCAAAAAAGCCACATTAAA+GGG | + | 57642:54963-54982 | None:intergenic | 35.0% | |
| CTAAATTAGCCCACCTAAAT+TGG | - | 57642:55206-55225 | MS.gene55328:intron | 35.0% | |
| CTGATACTCTAATAGCATCA+CGG | + | 57642:57816-57835 | None:intergenic | 35.0% | |
| GGAAAGCTTTCACAAATAGA+GGG | - | 57642:57664-57683 | MS.gene55328:intron | 35.0% | |
| GTTGAATGGACCTGAAAATT+TGG | - | 57642:55757-55776 | MS.gene55328:intron | 35.0% | |
| GTTGTTCCTATGACTTAGAA+AGG | + | 57642:55826-55845 | None:intergenic | 35.0% | |
| TAAACTCACTGGAACATCTA+GGG | + | 57642:56515-56534 | None:intergenic | 35.0% | |
| TAAATGGATGATGACTCACT+TGG | + | 57642:56273-56292 | None:intergenic | 35.0% | |
| TAGATCTCTCAAATCCCAAA+TGG | + | 57642:55017-55036 | None:intergenic | 35.0% | |
| TAGGAGATTAAGTGTGTGTT+TGG | - | 57642:55141-55160 | MS.gene55328:intron | 35.0% | |
| TAGTAACACTAACACCAAAC+AGG | + | 57642:56383-56402 | None:intergenic | 35.0% | |
| TATCAGGTTAATGAGCATCT+TGG | - | 57642:56918-56937 | MS.gene55328:intron | 35.0% | |
| TATGAGTTTGACGAAACCAA+GGG | - | 57642:57544-57563 | MS.gene55328:intron | 35.0% | |
| TGATACTCTAATAGCATCAC+GGG | + | 57642:57815-57834 | None:intergenic | 35.0% | |
| TGTTGAAGAAAAGGCCAAAT+GGG | - | 57642:56454-56473 | MS.gene55328:intron | 35.0% | |
| TTATGAGTTTGACGAAACCA+AGG | - | 57642:57543-57562 | MS.gene55328:intron | 35.0% | |
| TTCAACACAGACAACCAAAA+AGG | + | 57642:55743-55762 | None:intergenic | 35.0% | |
| TTCATGGGAAGTTTCCATTT+GGG | - | 57642:55000-55019 | MS.gene55328:CDS | 35.0% | |
| TTGCTTGTTTGAATCAACCT+TGG | - | 57642:55051-55070 | MS.gene55328:CDS | 35.0% | |
| TTGTAAGAACACCTTTGACT+CGG | + | 57642:57642-57661 | None:intergenic | 35.0% | |
| TTTCACCTAGTTTAGCATGA+CGG | + | 57642:56592-56611 | None:intergenic | 35.0% | |
| TTTCATGGGAAGTTTCCATT+TGG | - | 57642:54999-55018 | MS.gene55328:CDS | 35.0% | |
| ! | CATATAAGAGAAAGTGTGTC+AGG | + | 57642:56727-56746 | None:intergenic | 35.0% |
| ! | CTTGGATTAGAATTGGTACT+TGG | - | 57642:55069-55088 | MS.gene55328:CDS | 35.0% |
| ! | TCTCATGGAATGTTCTGTTT+TGG | - | 57642:55579-55598 | MS.gene55328:intron | 35.0% |
| !! | AGTCAAAGGTGTTCTTACAA+GGG | - | 57642:57642-57661 | MS.gene55328:intron | 35.0% |
| !! | GTTAGTTTGACCCTTTTCAT+GGG | - | 57642:54985-55004 | MS.gene55328:CDS | 35.0% |
| !! | TGTTAGTTTGACCCTTTTCA+TGG | - | 57642:54984-55003 | MS.gene55328:CDS | 35.0% |
| !! | TGTTTGTTTTCAAACTGCAG+GGG | + | 57642:55960-55979 | None:intergenic | 35.0% |
| !! | TTTTGGTTGTCTGTGTTGAA+TGG | - | 57642:55743-55762 | MS.gene55328:intron | 35.0% |
| !!! | CCCTTTAATGTGGCTTTTTT+GGG | - | 57642:54960-54979 | MS.gene55328:CDS | 35.0% |
| !!! | TCCCTTTAATGTGGCTTTTT+TGG | - | 57642:54959-54978 | MS.gene55328:CDS | 35.0% |
| AAAAGGGTGAAGTGAGAATG+AGG | + | 57642:56704-56723 | None:intergenic | 40.0% | |
| AAAGTGGCAAGCTTGAAGAT+TGG | - | 57642:54795-54814 | MS.gene55328:CDS | 40.0% | |
| ACAATGTGAAGAAACCAGCT+GGG | + | 57642:56836-56855 | None:intergenic | 40.0% | |
| AGATCTGGTAAACCTTTCTG+TGG | + | 57642:57472-57491 | None:intergenic | 40.0% | |
| CTGTTGAAGAAAAGGCCAAA+TGG | - | 57642:56453-56472 | MS.gene55328:intron | 40.0% | |
| GAATCAAACTTGAGACATCG+AGG | - | 57642:55238-55257 | MS.gene55328:intron | 40.0% | |
| GATACTCTAATAGCATCACG+GGG | + | 57642:57814-57833 | None:intergenic | 40.0% | |
| GGGAAAGCTTTCACAAATAG+AGG | - | 57642:57663-57682 | MS.gene55328:intron | 40.0% | |
| GTCTACACGCAAAAATGACT+AGG | - | 57642:57343-57362 | MS.gene55328:intron | 40.0% | |
| GTCTCAAGTTTGATTCTCTC+CGG | + | 57642:55234-55253 | None:intergenic | 40.0% | |
| TCCTCTAAACCAATTTGGGT+TGG | + | 57642:55302-55321 | None:intergenic | 40.0% | |
| TGTAAGAACACCTTTGACTC+GGG | + | 57642:57641-57660 | None:intergenic | 40.0% | |
| TGTTAAGAAGTCAAGGCCAA+AGG | - | 57642:57774-57793 | MS.gene55328:CDS | 40.0% | |
| TTAGAGAAGAGTGAACTCAG+AGG | + | 57642:56812-56831 | None:intergenic | 40.0% | |
| ! | AAGTACCGTCATGCTAAACT+AGG | - | 57642:56584-56603 | MS.gene55328:intron | 40.0% |
| ! | AGAGAAAGTGTGTCAGGAAA+AGG | + | 57642:56721-56740 | None:intergenic | 40.0% |
| ! | CTCAAGCACTGTTGAAGAAA+AGG | - | 57642:56445-56464 | MS.gene55328:intron | 40.0% |
| ! | GAGAAAGTGTGTCAGGAAAA+GGG | + | 57642:56720-56739 | None:intergenic | 40.0% |
| ! | GATAAGATTTGGGTTACTGC+TGG | - | 57642:57751-57770 | MS.gene55328:CDS | 40.0% |
| !! | AGATTGGACTTGGTGATTCA+TGG | - | 57642:54811-54830 | MS.gene55328:CDS | 40.0% |
| !! | GAGTCAAAGGTGTTCTTACA+AGG | - | 57642:57641-57660 | MS.gene55328:intron | 40.0% |
| !! | GTCAAAGGTGTTCTTACAAG+GGG | - | 57642:57643-57662 | MS.gene55328:intron | 40.0% |
| !! | GTGTTTGGTTCCATTTTCAG+AGG | - | 57642:55156-55175 | MS.gene55328:intron | 40.0% |
| !!! | GCTTGTTTTAGTGGTTCTCA+TGG | - | 57642:55564-55583 | MS.gene55328:intron | 40.0% |
| AACAGGGCCATTCAAACGAA+TGG | + | 57642:56366-56385 | None:intergenic | 45.0% | |
| ACTATCAGGCCAACCCAAAT+TGG | - | 57642:55290-55309 | MS.gene55328:intron | 45.0% | |
| CACAATGTGAAGAAACCAGC+TGG | + | 57642:56837-56856 | None:intergenic | 45.0% | |
| CTACTTACCATCTGCATGTG+AGG | - | 57642:57579-57598 | MS.gene55328:intron | 45.0% | |
| GCAAGCTTGAAGATTGGACT+TGG | - | 57642:54801-54820 | MS.gene55328:CDS | 45.0% | |
| GGAGAAAGCTCTCACTAAAG+TGG | - | 57642:54779-54798 | MS.gene55328:CDS | 45.0% | |
| GGTGTATCGTAAGCATCCTT+TGG | + | 57642:57793-57812 | None:intergenic | 45.0% | |
| GTAGACAATCAGCTTACCCT+TGG | + | 57642:57563-57582 | None:intergenic | 45.0% | |
| GTGACAAGTGTGACAGTAGA+GGG | - | 57642:57718-57737 | MS.gene55328:intron | 45.0% | |
| TCAAACTTGAGACATCGAGG+AGG | - | 57642:55241-55260 | MS.gene55328:intron | 45.0% | |
| TTCGTTTGAATGGCCCTGTT+TGG | - | 57642:56366-56385 | MS.gene55328:intron | 45.0% | |
| ! | ATTCTCTCCGGTGCCAATTT+AGG | + | 57642:55222-55241 | None:intergenic | 45.0% |
| ! | CTGCTGGTGTTAAGAAGTCA+AGG | - | 57642:57767-57786 | MS.gene55328:CDS | 45.0% |
| ! | GCCAACCCAAATTGGTTTAG+AGG | - | 57642:55298-55317 | MS.gene55328:intron | 45.0% |
| !! | ATAGTATTGGCTTGGGACCT+GGG | + | 57642:55275-55294 | None:intergenic | 45.0% |
| !! | TGGCCTGATAGTATTGGCTT+GGG | + | 57642:55282-55301 | None:intergenic | 45.0% |
| !! | TTGGCCTGATAGTATTGGCT+TGG | + | 57642:55283-55302 | None:intergenic | 45.0% |
| !! | TTGGGTTGGCCTGATAGTAT+TGG | + | 57642:55288-55307 | None:intergenic | 45.0% |
| !! | TTTTGAGGAAATAGCCCGAG+CGG | + | 57642:57514-57533 | None:intergenic | 45.0% |
| AAGCTGACCTCACATGCAGA+TGG | + | 57642:57589-57608 | None:intergenic | 50.0% | |
| ACCTTTCTGTGGCTTACCTG+TGG | + | 57642:57461-57480 | None:intergenic | 50.0% | |
| CACTCTTCTCTAAACCCAGC+TGG | - | 57642:56819-56838 | MS.gene55328:intron | 50.0% | |
| CCTTTCTGTGGCTTACCTGT+GGG | + | 57642:57460-57479 | None:intergenic | 50.0% | |
| CGATATGCAACCCGAGTCAA+AGG | - | 57642:57628-57647 | MS.gene55328:intron | 50.0% | |
| GGGTGAAGTGAGAATGAGGT+AGG | + | 57642:56700-56719 | None:intergenic | 50.0% | |
| GGTCCCAAGCCAATACTATC+AGG | - | 57642:55276-55295 | MS.gene55328:intron | 50.0% | |
| GGTGACAAGTGTGACAGTAG+AGG | - | 57642:57717-57736 | MS.gene55328:intron | 50.0% | |
| GGTTGCATATCGCAGTACAG+AGG | + | 57642:57620-57639 | None:intergenic | 50.0% | |
| TAGCCCACCTAAATTGGCAC+CGG | - | 57642:55212-55231 | MS.gene55328:intron | 50.0% | |
| TGCATGTGAGGTCAGCTTCA+AGG | - | 57642:57591-57610 | MS.gene55328:intron | 50.0% | |
| ! | AGAGTGAACTCAGAGGTGCA+TGG | + | 57642:56805-56824 | None:intergenic | 50.0% |
| ! | TCTCCGGTGCCAATTTAGGT+GGG | + | 57642:55218-55237 | None:intergenic | 50.0% |
| !! | GATAGTATTGGCTTGGGACC+TGG | + | 57642:55276-55295 | None:intergenic | 50.0% |
| CCCACAGGTAAGCCACAGAA+AGG | - | 57642:57457-57476 | MS.gene55328:intron | 55.0% | |
| TCTGTGGCTTACCTGTGGGA+AGG | + | 57642:57456-57475 | None:intergenic | 55.0% | |
| ! | CTCTCCGGTGCCAATTTAGG+TGG | + | 57642:55219-55238 | None:intergenic | 55.0% |
| ! | TGCTCTGAATGCCTTCCCAC+AGG | - | 57642:57442-57461 | MS.gene55328:intron | 55.0% |
| ! | TCGAGGAGGAGTACACTCCC+AGG | - | 57642:55255-55274 | MS.gene55328:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57642 | gene | 54777 | 57843 | 54777 | ID=MS.gene55328 |
| 57642 | mRNA | 54777 | 57843 | 54777 | ID=MS.gene55328.t1;Parent=MS.gene55328 |
| 57642 | exon | 57736 | 57843 | 57736 | ID=MS.gene55328.t1.exon1;Parent=MS.gene55328.t1 |
| 57642 | CDS | 57736 | 57843 | 57736 | ID=cds.MS.gene55328.t1;Parent=MS.gene55328.t1 |
| 57642 | exon | 56126 | 56180 | 56126 | ID=MS.gene55328.t1.exon2;Parent=MS.gene55328.t1 |
| 57642 | CDS | 56126 | 56180 | 56126 | ID=cds.MS.gene55328.t1;Parent=MS.gene55328.t1 |
| 57642 | exon | 54777 | 55156 | 54777 | ID=MS.gene55328.t1.exon3;Parent=MS.gene55328.t1 |
| 57642 | CDS | 54777 | 55156 | 54777 | ID=cds.MS.gene55328.t1;Parent=MS.gene55328.t1 |
| Gene Sequence |
| Protein sequence |
