Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55886.t1 | XP_003630654.2 | 97 | 235 | 7 | 0 | 1 | 235 | 6 | 240 | 4.90E-127 | 463.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55886.t1 | Q9C5D7 | 65.0 | 223 | 78 | 0 | 12 | 234 | 9 | 231 | 1.1e-82 | 307.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55886.t1 | G7LJL7 | 97.0 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 3.5e-127 | 463.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55886 | MS.gene047856 | PPI |
| MS.gene55886 | MS.gene28756 | PPI |
| MS.gene55886 | MS.gene059423 | PPI |
| MS.gene55886 | MS.gene053539 | PPI |
| MS.gene028389 | MS.gene55886 | PPI |
| MS.gene55886 | MS.gene053535 | PPI |
| MS.gene55886 | MS.gene35069 | PPI |
| MS.gene55886 | MS.gene26463 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55886.t1 | MTR_8g101900 | 97.021 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 5.56e-171 | 470 |
| MS.gene55886.t1 | MTR_8g021225 | 73.362 | 229 | 60 | 1 | 6 | 233 | 5 | 233 | 7.20e-122 | 346 |
| MS.gene55886.t1 | MTR_6g091680 | 70.996 | 231 | 67 | 0 | 5 | 235 | 8 | 238 | 5.36e-110 | 316 |
| MS.gene55886.t1 | MTR_4g085590 | 58.929 | 224 | 91 | 1 | 12 | 234 | 23 | 246 | 1.21e-96 | 282 |
| MS.gene55886.t1 | MTR_4g094925 | 54.626 | 227 | 102 | 1 | 9 | 234 | 16 | 242 | 4.84e-90 | 265 |
| MS.gene55886.t1 | MTR_4g094815 | 53.509 | 228 | 105 | 1 | 8 | 234 | 20 | 247 | 1.72e-89 | 264 |
| MS.gene55886.t1 | MTR_4g094898 | 54.825 | 228 | 102 | 1 | 8 | 234 | 20 | 247 | 1.05e-83 | 249 |
| MS.gene55886.t1 | MTR_4g094812 | 55.804 | 224 | 98 | 1 | 12 | 234 | 22 | 245 | 1.10e-80 | 242 |
| MS.gene55886.t1 | MTR_4g094368 | 52.232 | 224 | 103 | 3 | 12 | 232 | 5 | 227 | 4.54e-79 | 237 |
| MS.gene55886.t1 | MTR_4g094925 | 53.646 | 192 | 87 | 2 | 45 | 234 | 20 | 211 | 1.17e-74 | 225 |
| MS.gene55886.t1 | MTR_4g094898 | 55.914 | 186 | 81 | 1 | 50 | 234 | 1 | 186 | 1.21e-67 | 207 |
| MS.gene55886.t1 | MTR_2g070410 | 41.204 | 216 | 118 | 4 | 18 | 233 | 91 | 297 | 3.17e-48 | 160 |
| MS.gene55886.t1 | MTR_2g070410 | 41.860 | 172 | 96 | 2 | 18 | 189 | 91 | 258 | 3.39e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55886.t1 | AT4G26220 | 65.022 | 223 | 78 | 0 | 12 | 234 | 9 | 231 | 7.42e-108 | 310 |
| MS.gene55886.t1 | AT4G34050 | 59.111 | 225 | 91 | 1 | 12 | 235 | 35 | 259 | 1.38e-96 | 283 |
| MS.gene55886.t1 | AT4G34050 | 59.111 | 225 | 91 | 1 | 12 | 235 | 62 | 286 | 1.60e-96 | 283 |
| MS.gene55886.t1 | AT1G67980 | 56.637 | 226 | 93 | 2 | 12 | 235 | 10 | 232 | 3.42e-88 | 260 |
| MS.gene55886.t1 | AT1G24735 | 55.947 | 227 | 95 | 3 | 12 | 235 | 16 | 240 | 5.18e-83 | 248 |
| MS.gene55886.t1 | AT1G67990 | 53.540 | 226 | 101 | 2 | 12 | 235 | 10 | 233 | 5.78e-81 | 242 |
| MS.gene55886.t1 | AT1G24735 | 45.848 | 277 | 94 | 4 | 12 | 234 | 16 | 290 | 1.06e-74 | 228 |
| MS.gene55886.t1 | AT1G24735 | 56.989 | 186 | 77 | 2 | 50 | 234 | 11 | 194 | 5.09e-71 | 216 |
| MS.gene55886.t1 | AT1G67980 | 50.909 | 165 | 78 | 1 | 70 | 234 | 2 | 163 | 3.77e-54 | 171 |
| MS.gene55886.t1 | AT3G61990 | 42.647 | 204 | 108 | 4 | 30 | 233 | 95 | 289 | 4.52e-48 | 160 |
| MS.gene55886.t1 | AT3G62000 | 40.000 | 205 | 115 | 4 | 30 | 233 | 80 | 277 | 3.54e-46 | 155 |
| MS.gene55886.t1 | AT4G34050 | 54.472 | 123 | 55 | 1 | 113 | 234 | 25 | 147 | 7.73e-45 | 147 |
| MS.gene55886.t1 | AT3G62000 | 37.383 | 214 | 123 | 5 | 11 | 223 | 64 | 267 | 2.85e-38 | 136 |
Find 41 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGAAACTACCGTTTC+TGG | 0.209949 | 4.3:+3491854 | None:intergenic |
| CCATGAGAGGCTTATCAAAT+TGG | 0.230744 | 4.3:-3491936 | MS.gene55886:CDS |
| TCAAAAGTACCTTCATTTGC+AGG | 0.353092 | 4.3:+3492001 | None:intergenic |
| TGCCTACGATAACACCCTTT+GGG | 0.369512 | 4.3:-3491894 | MS.gene55886:CDS |
| GTAATTCTTCAGTGGCTTCA+TGG | 0.374269 | 4.3:-3492775 | MS.gene55886:intron |
| TCTAAAAGTTTATCAAGAAC+TGG | 0.389451 | 4.3:+3492116 | None:intergenic |
| ACCTGATGCGGGTCAGCTAA+TGG | 0.395308 | 4.3:-3492745 | MS.gene55886:CDS |
| ATACAAACCTTTCCATCATA+TGG | 0.399941 | 4.3:+3492633 | None:intergenic |
| TTGCCTACGATAACACCCTT+TGG | 0.417902 | 4.3:-3491895 | MS.gene55886:CDS |
| TTTCAGAAACAAAGAGAGAA+TGG | 0.425659 | 4.3:-3491841 | MS.gene55886:CDS |
| GACAGAAAAGCTTATGAGAT+AGG | 0.427880 | 4.3:-3492203 | MS.gene55886:CDS |
| TTATCAAGAACTGGCAAAGC+TGG | 0.435178 | 4.3:+3492125 | None:intergenic |
| GCCATTAGCTGACCCGCATC+AGG | 0.436416 | 4.3:+3492744 | None:intergenic |
| TAATTCTTCAGTGGCTTCAT+GGG | 0.469413 | 4.3:-3492774 | MS.gene55886:intron |
| ATCAAATTGGTTAAGATCGG+TGG | 0.482512 | 4.3:-3491923 | MS.gene55886:CDS |
| GCACTTAACATTCCATATGA+TGG | 0.489413 | 4.3:-3492645 | MS.gene55886:CDS |
| AACTGTTGCCTTGCCAGAAA+CGG | 0.495235 | 4.3:-3491867 | MS.gene55886:CDS |
| CTTATCAAATTGGTTAAGAT+CGG | 0.511198 | 4.3:-3491926 | MS.gene55886:CDS |
| TTGAGAGTCTCTGCTTCTCG+TGG | 0.514299 | 4.3:+3493037 | None:intergenic |
| CATGGGCACTTCACCTGATG+CGG | 0.516416 | 4.3:-3492757 | MS.gene55886:CDS |
| TTTCAATGAAGCAGTTTCAA+AGG | 0.518882 | 4.3:-3491801 | MS.gene55886:CDS |
| TGAAACTACCGTTTCTGGCA+AGG | 0.521241 | 4.3:+3491859 | None:intergenic |
| ATGGGCACTTCACCTGATGC+GGG | 0.527395 | 4.3:-3492756 | MS.gene55886:CDS |
| CTGCAAAATAACTGCATTGG+TGG | 0.528279 | 4.3:+3493186 | None:intergenic |
| CCAATTTGATAAGCCTCTCA+TGG | 0.530119 | 4.3:+3491936 | None:intergenic |
| TAACATTCCATATGATGGAA+AGG | 0.530971 | 4.3:-3492640 | MS.gene55886:intron |
| GCAGAGCGAGGGCTTACTCA+AGG | 0.558409 | 4.3:-3493167 | MS.gene55886:intron |
| TGCTTCTCGTGGGTAAACAC+TGG | 0.559815 | 4.3:+3493048 | None:intergenic |
| GGCAACAGTTCCTCCCCAAA+GGG | 0.563275 | 4.3:+3491880 | None:intergenic |
| AGGCAACAGTTCCTCCCCAA+AGG | 0.565907 | 4.3:+3491879 | None:intergenic |
| TCAAATTGGTTAAGATCGGT+GGG | 0.567728 | 4.3:-3491922 | MS.gene55886:CDS |
| TGAGAGTCTCTGCTTCTCGT+GGG | 0.576132 | 4.3:+3493038 | None:intergenic |
| GCTCTGCAAAATAACTGCAT+TGG | 0.577755 | 4.3:+3493183 | None:intergenic |
| GCGACGGACTCACTATCTGC+AGG | 0.587918 | 4.3:-3491745 | MS.gene55886:CDS |
| ACTATTGGAATTACCATGAG+AGG | 0.588635 | 4.3:-3491949 | MS.gene55886:CDS |
| TTGATGCAGCCTGCAAATGA+AGG | 0.599302 | 4.3:-3492010 | MS.gene55886:intron |
| GCCTACGATAACACCCTTTG+GGG | 0.620350 | 4.3:-3491893 | MS.gene55886:CDS |
| TACGATAACACCCTTTGGGG+AGG | 0.624507 | 4.3:-3491890 | MS.gene55886:CDS |
| AGTTTCAAAGGATCCTCGTA+TGG | 0.625984 | 4.3:-3491789 | MS.gene55886:CDS |
| TCCCCAAAGGGTGTTATCGT+AGG | 0.628321 | 4.3:+3491892 | None:intergenic |
| ACAAAAGCAAGTTCCATACG+AGG | 0.723375 | 4.3:+3491776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAGATTAATTAAGT+AGG | + | chr4.3:3491849-3491868 | None:intergenic | 10.0% |
| !!! | TTAATTAATCTAAAATTTTG+TGG | - | chr4.3:3491851-3491870 | MS.gene55886:CDS | 10.0% |
| !! | AAATAACTTCTATGATTTAT+AGG | + | chr4.3:3491996-3492015 | None:intergenic | 15.0% |
| !! | AAAATTTGATTATGCATACA+AGG | - | chr4.3:3492024-3492043 | MS.gene55886:intron | 20.0% |
| !! | ACAATGTTAAATGAATATGT+TGG | - | chr4.3:3492541-3492560 | MS.gene55886:intron | 20.0% |
| !!! | AAAGTATCACATATAGTTTA+TGG | - | chr4.3:3492365-3492384 | MS.gene55886:intron | 20.0% |
| !!! | TAGTTCAAAAAACTTTTACT+TGG | + | chr4.3:3492398-3492417 | None:intergenic | 20.0% |
| ! | AACTTCTATGATTTATAGGT+TGG | + | chr4.3:3491992-3492011 | None:intergenic | 25.0% |
| ! | AAGGAAAAGAAAAACCATTA+TGG | + | chr4.3:3492904-3492923 | None:intergenic | 25.0% |
| ! | AGGAAAAGAAAAACCATTAT+GGG | + | chr4.3:3492903-3492922 | None:intergenic | 25.0% |
| ! | AGTCTTAAGAATAATTACAG+AGG | + | chr4.3:3491955-3491974 | None:intergenic | 25.0% |
| ! | ATGCTGACAAAAATAACTAT+TGG | - | chr4.3:3492974-3492993 | MS.gene55886:intron | 25.0% |
| ! | ATGTTATTGTAATTCTTCAG+TGG | - | chr4.3:3492155-3492174 | MS.gene55886:CDS | 25.0% |
| ! | CTTATCAAATTGGTTAAGAT+CGG | - | chr4.3:3493012-3493031 | MS.gene55886:CDS | 25.0% |
| ! | TCTAAAAGTTTATCAAGAAC+TGG | + | chr4.3:3492825-3492844 | None:intergenic | 25.0% |
| !! | TTTTTGAACTAGAACAATGA+TGG | - | chr4.3:3492407-3492426 | MS.gene55886:intron | 25.0% |
| AGGACTTCCATTCATAAAAA+AGG | - | chr4.3:3492755-3492774 | MS.gene55886:CDS | 30.0% | |
| ATACAAACCTTTCCATCATA+TGG | + | chr4.3:3492308-3492327 | None:intergenic | 30.0% | |
| CTAAACAGTTACAACAAACA+TGG | + | chr4.3:3491816-3491835 | None:intergenic | 30.0% | |
| GCTAAAAAGACAATTGAAGT+AGG | - | chr4.3:3492239-3492258 | MS.gene55886:intron | 30.0% | |
| TAAATGTATGCAAAGAGAGA+GGG | + | chr4.3:3492629-3492648 | None:intergenic | 30.0% | |
| TTTCAATGAAGCAGTTTCAA+AGG | - | chr4.3:3493137-3493156 | MS.gene55886:intron | 30.0% | |
| TTTCAGAAACAAAGAGAGAA+TGG | - | chr4.3:3493097-3493116 | MS.gene55886:intron | 30.0% | |
| ! | ATTTTTGTCAGCATCAACAA+AGG | + | chr4.3:3492968-3492987 | None:intergenic | 30.0% |
| ! | TAACATTCCATATGATGGAA+AGG | - | chr4.3:3492298-3492317 | MS.gene55886:intron | 30.0% |
| !! | GAACTTGCTTTTGTTTCAAT+AGG | - | chr4.3:3493171-3493190 | MS.gene55886:CDS | 30.0% |
| ACTATTGGAATTACCATGAG+AGG | - | chr4.3:3492989-3493008 | MS.gene55886:intron | 35.0% | |
| ATCAAATTGGTTAAGATCGG+TGG | - | chr4.3:3493015-3493034 | MS.gene55886:CDS | 35.0% | |
| ATCTCCACATATATCTTTCC+AGG | - | chr4.3:3492867-3492886 | MS.gene55886:intron | 35.0% | |
| CTAAATGTATGCAAAGAGAG+AGG | + | chr4.3:3492630-3492649 | None:intergenic | 35.0% | |
| CTTCCATTCATAAAAAAGGC+TGG | - | chr4.3:3492759-3492778 | MS.gene55886:CDS | 35.0% | |
| CTTCTTCTCTACCAAATTGA+CGG | + | chr4.3:3492502-3492521 | None:intergenic | 35.0% | |
| GACAGAAAAGCTTATGAGAT+AGG | - | chr4.3:3492735-3492754 | MS.gene55886:CDS | 35.0% | |
| GCACTTAACATTCCATATGA+TGG | - | chr4.3:3492293-3492312 | MS.gene55886:intron | 35.0% | |
| TAATTCTTCAGTGGCTTCAT+GGG | - | chr4.3:3492164-3492183 | MS.gene55886:CDS | 35.0% | |
| TCAAATTGGTTAAGATCGGT+GGG | - | chr4.3:3493016-3493035 | MS.gene55886:CDS | 35.0% | |
| ! | ATCTCATAAGCTTTTCTGTC+TGG | + | chr4.3:3492735-3492754 | None:intergenic | 35.0% |
| ! | ATTGAAGTAGGAGTTTTCAC+TGG | - | chr4.3:3492251-3492270 | MS.gene55886:intron | 35.0% |
| !! | TCAAAAGTACCTTCATTTGC+AGG | + | chr4.3:3492940-3492959 | None:intergenic | 35.0% |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | + | chr4.3:3492765-3492784 | None:intergenic | 35.0% |
| AAACCATTATGGGTCTGACT+TGG | + | chr4.3:3492893-3492912 | None:intergenic | 40.0% | |
| ACAAAAGCAAGTTCCATACG+AGG | + | chr4.3:3493165-3493184 | None:intergenic | 40.0% | |
| AGTTTCAAAGGATCCTCGTA+TGG | - | chr4.3:3493149-3493168 | MS.gene55886:intron | 40.0% | |
| CCAATTTGATAAGCCTCTCA+TGG | + | chr4.3:3493005-3493024 | None:intergenic | 40.0% | |
| CCATGAGAGGCTTATCAAAT+TGG | - | chr4.3:3493002-3493021 | MS.gene55886:intron | 40.0% | |
| CGTCAATTTGGTAGAGAAGA+AGG | - | chr4.3:3492500-3492519 | MS.gene55886:intron | 40.0% | |
| CTGCAAAATAACTGCATTGG+TGG | + | chr4.3:3491755-3491774 | None:intergenic | 40.0% | |
| CTGTAGAAGCCAGTATGTAT+AGG | + | chr4.3:3492341-3492360 | None:intergenic | 40.0% | |
| GAATCCAATCACCGTCAATT+TGG | - | chr4.3:3492488-3492507 | MS.gene55886:intron | 40.0% | |
| GCTCTGCAAAATAACTGCAT+TGG | + | chr4.3:3491758-3491777 | None:intergenic | 40.0% | |
| GTAATTCTTCAGTGGCTTCA+TGG | - | chr4.3:3492163-3492182 | MS.gene55886:CDS | 40.0% | |
| TAGAAGCCAGTATGTATAGG+AGG | + | chr4.3:3492338-3492357 | None:intergenic | 40.0% | |
| TCTACCAAATTGACGGTGAT+TGG | + | chr4.3:3492495-3492514 | None:intergenic | 40.0% | |
| TGCTTTCCTCCTATACATAC+TGG | - | chr4.3:3492329-3492348 | MS.gene55886:intron | 40.0% | |
| TTATCAAGAACTGGCAAAGC+TGG | + | chr4.3:3492816-3492835 | None:intergenic | 40.0% | |
| TTGGCCTGGAAAGATATATG+TGG | + | chr4.3:3492874-3492893 | None:intergenic | 40.0% | |
| ! | AGCTTTTCTGTCTGGATCTA+CGG | + | chr4.3:3492727-3492746 | None:intergenic | 40.0% |
| !! | ATACATACTGGCTTCTACAG+TGG | - | chr4.3:3492341-3492360 | MS.gene55886:intron | 40.0% |
| !! | GCTTTTGTTTCAATAGGCGA+CGG | - | chr4.3:3493177-3493196 | MS.gene55886:CDS | 40.0% |
| !! | GTTTCTGAAACTACCGTTTC+TGG | + | chr4.3:3493087-3493106 | None:intergenic | 40.0% |
| AACTGTTGCCTTGCCAGAAA+CGG | - | chr4.3:3493071-3493090 | MS.gene55886:intron | 45.0% | |
| ATCTACAGCAGGCAGACAAA+TGG | + | chr4.3:3492699-3492718 | None:intergenic | 45.0% | |
| TCTACAGCAGGCAGACAAAT+GGG | + | chr4.3:3492698-3492717 | None:intergenic | 45.0% | |
| TGACTTCTTCAGTCAGCATC+AGG | - | chr4.3:3492115-3492134 | MS.gene55886:CDS | 45.0% | |
| TGCCTACGATAACACCCTTT+GGG | - | chr4.3:3493044-3493063 | MS.gene55886:CDS | 45.0% | |
| TGGATGTTGCTCTTCGTAAG+TGG | - | chr4.3:3492427-3492446 | MS.gene55886:intron | 45.0% | |
| TTGATGCAGCCTGCAAATGA+AGG | - | chr4.3:3492928-3492947 | MS.gene55886:intron | 45.0% | |
| TTGCCTACGATAACACCCTT+TGG | - | chr4.3:3493043-3493062 | MS.gene55886:CDS | 45.0% | |
| !! | GCAGTTATTTTGCAGAGCGA+GGG | - | chr4.3:3491760-3491779 | MS.gene55886:CDS | 45.0% |
| !! | TGAAACTACCGTTTCTGGCA+AGG | + | chr4.3:3493082-3493101 | None:intergenic | 45.0% |
| !! | TGCAGTTATTTTGCAGAGCG+AGG | - | chr4.3:3491759-3491778 | MS.gene55886:CDS | 45.0% |
| AGGCCAAGTCAGACCCATAA+TGG | - | chr4.3:3492887-3492906 | MS.gene55886:intron | 50.0% | |
| CTACAGCAGGCAGACAAATG+GGG | + | chr4.3:3492697-3492716 | None:intergenic | 50.0% | |
| CTACGGCTGTAATCTACAGC+AGG | + | chr4.3:3492710-3492729 | None:intergenic | 50.0% | |
| GCCTACGATAACACCCTTTG+GGG | - | chr4.3:3493045-3493064 | MS.gene55886:CDS | 50.0% | |
| TGAGAGTCTCTGCTTCTCGT+GGG | + | chr4.3:3491903-3491922 | None:intergenic | 50.0% | |
| TGCAGGCTGCATCAAGACAA+AGG | + | chr4.3:3492923-3492942 | None:intergenic | 50.0% | |
| TGCTTCTCGTGGGTAAACAC+TGG | + | chr4.3:3491893-3491912 | None:intergenic | 50.0% | |
| TTGAGAGTCTCTGCTTCTCG+TGG | + | chr4.3:3491904-3491923 | None:intergenic | 50.0% | |
| ! | TACGATAACACCCTTTGGGG+AGG | - | chr4.3:3493048-3493067 | MS.gene55886:CDS | 50.0% |
| !! | ATTATGGGTCTGACTTGGCC+TGG | + | chr4.3:3492888-3492907 | None:intergenic | 50.0% |
| !! | TCCCCAAAGGGTGTTATCGT+AGG | + | chr4.3:3493049-3493068 | None:intergenic | 50.0% |
| ACCTGATGCGGGTCAGCTAA+TGG | - | chr4.3:3492193-3492212 | MS.gene55886:CDS | 55.0% | |
| AGGCAACAGTTCCTCCCCAA+AGG | + | chr4.3:3493062-3493081 | None:intergenic | 55.0% | |
| ATGGGCACTTCACCTGATGC+GGG | - | chr4.3:3492182-3492201 | MS.gene55886:CDS | 55.0% | |
| CATGGGCACTTCACCTGATG+CGG | - | chr4.3:3492181-3492200 | MS.gene55886:CDS | 55.0% | |
| GGCAACAGTTCCTCCCCAAA+GGG | + | chr4.3:3493061-3493080 | None:intergenic | 55.0% | |
| GCAGAGCGAGGGCTTACTCA+AGG | - | chr4.3:3491771-3491790 | MS.gene55886:CDS | 60.0% | |
| GCCATTAGCTGACCCGCATC+AGG | + | chr4.3:3492197-3492216 | None:intergenic | 60.0% | |
| ! | GCGACGGACTCACTATCTGC+AGG | - | chr4.3:3493193-3493212 | MS.gene55886:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3491733 | 3493227 | 3491733 | ID=MS.gene55886 |
| chr4.3 | mRNA | 3491733 | 3493227 | 3491733 | ID=MS.gene55886.t1;Parent=MS.gene55886 |
| chr4.3 | exon | 3493168 | 3493227 | 3493168 | ID=MS.gene55886.t1.exon1;Parent=MS.gene55886.t1 |
| chr4.3 | CDS | 3493168 | 3493227 | 3493168 | ID=cds.MS.gene55886.t1;Parent=MS.gene55886.t1 |
| chr4.3 | exon | 3493004 | 3493083 | 3493004 | ID=MS.gene55886.t1.exon2;Parent=MS.gene55886.t1 |
| chr4.3 | CDS | 3493004 | 3493083 | 3493004 | ID=cds.MS.gene55886.t1;Parent=MS.gene55886.t1 |
| chr4.3 | exon | 3492641 | 3492785 | 3492641 | ID=MS.gene55886.t1.exon3;Parent=MS.gene55886.t1 |
| chr4.3 | CDS | 3492641 | 3492785 | 3492641 | ID=cds.MS.gene55886.t1;Parent=MS.gene55886.t1 |
| chr4.3 | exon | 3492112 | 3492243 | 3492112 | ID=MS.gene55886.t1.exon4;Parent=MS.gene55886.t1 |
| chr4.3 | CDS | 3492112 | 3492243 | 3492112 | ID=cds.MS.gene55886.t1;Parent=MS.gene55886.t1 |
| chr4.3 | exon | 3491733 | 3492023 | 3491733 | ID=MS.gene55886.t1.exon5;Parent=MS.gene55886.t1 |
| chr4.3 | CDS | 3491733 | 3492023 | 3491733 | ID=cds.MS.gene55886.t1;Parent=MS.gene55886.t1 |
| Gene Sequence |
| Protein sequence |
