Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56127.t1 | XP_003621749.2 | 98.9 | 359 | 3 | 1 | 1 | 358 | 1 | 359 | 3.40E-204 | 720.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56127.t1 | G7KUS0 | 98.9 | 359 | 3 | 1 | 1 | 358 | 1 | 359 | 2.4e-204 | 720.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene56127 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene04917 | MS.gene56127 | 0.802215 | 6.24E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene56127 | 0.821981 | 3.02E-53 | -1.69E-46 |
| MS.gene050114 | MS.gene56127 | 0.815852 | 7.47E-52 | -1.69E-46 |
| MS.gene050317 | MS.gene56127 | 0.8098 | 1.58E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene56127 | 0.839735 | 1.33E-57 | -1.69E-46 |
| MS.gene053786 | MS.gene56127 | 0.801362 | 9.33E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene56127 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene56127 | 0.80687 | 6.67E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene56127 | 0.801527 | 8.63E-49 | -1.69E-46 |
| MS.gene056752 | MS.gene56127 | 0.826782 | 2.25E-54 | -1.69E-46 |
| MS.gene057721 | MS.gene56127 | 0.828069 | 1.10E-54 | -1.69E-46 |
| MS.gene058638 | MS.gene56127 | 0.827699 | 1.35E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene56127 | 0.824721 | 6.92E-54 | -1.69E-46 |
| MS.gene058646 | MS.gene56127 | 0.800814 | 1.21E-48 | -1.69E-46 |
| MS.gene058654 | MS.gene56127 | 0.817287 | 3.57E-52 | -1.69E-46 |
| MS.gene058720 | MS.gene56127 | 0.804263 | 2.35E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene56127 | 0.828204 | 1.02E-54 | -1.69E-46 |
| MS.gene05880 | MS.gene56127 | 0.823578 | 1.28E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene56127 | 0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene060563 | MS.gene56127 | 0.804552 | 2.04E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene56127 | 0.835859 | 1.31E-56 | -1.69E-46 |
| MS.gene060870 | MS.gene56127 | 0.80964 | 1.71E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene56127 | 0.834213 | 3.41E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56127.t1 | MTR_7g022390 | 98.886 | 359 | 3 | 1 | 1 | 358 | 1 | 359 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56127.t1 | AT5G13100 | 68.937 | 367 | 92 | 6 | 1 | 358 | 1 | 354 | 1.88e-168 | 474 |
Find 98 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTGTCGTCGGCGATT+TGG | 0.292982 | 7.4:+79556423 | None:intergenic |
| ACCTGAGATCAACATGTATT+TGG | 0.301575 | 7.4:+79555084 | None:intergenic |
| CACCGGCGTCGGCGCTTCCT+TGG | 0.318979 | 7.4:-79556453 | MS.gene56127:CDS |
| GGTGAAGTTGTTGGCGAAGA+AGG | 0.346403 | 7.4:-79555963 | MS.gene56127:CDS |
| GCCGGATCTGATGTTTGGTT+GGG | 0.350622 | 7.4:-79556005 | MS.gene56127:CDS |
| CGCTGTTGTTTCCCAAGAAA+AGG | 0.358529 | 7.4:-79553778 | MS.gene56127:CDS |
| CGCCGGATCTGATGTTTGGT+TGG | 0.367147 | 7.4:-79556006 | MS.gene56127:CDS |
| AGTTCTGCAATTTCGCTCCT+TGG | 0.368048 | 7.4:+79553983 | None:intergenic |
| GAGGGTCGTGCTGCAGCTTT+CGG | 0.374658 | 7.4:-79554986 | MS.gene56127:CDS |
| CGCTTTCACCGGCGGCGGAT+GGG | 0.384709 | 7.4:-79556347 | MS.gene56127:CDS |
| CACCGTAGATCTCGTCGTTC+CGG | 0.387066 | 7.4:-79556386 | MS.gene56127:CDS |
| CACACAGGTTGGTGCGGTGC+TGG | 0.398640 | 7.4:-79553837 | MS.gene56127:intron |
| ACGCTTTCACCGGCGGCGGA+TGG | 0.405596 | 7.4:-79556348 | MS.gene56127:CDS |
| ATGATATCATATTCATCATC+AGG | 0.435655 | 7.4:+79555058 | None:intergenic |
| CAAATCGCCGACGACACAAA+TGG | 0.439168 | 7.4:-79556422 | MS.gene56127:CDS |
| TACCTGTTCCTTTCATGAAA+AGG | 0.439961 | 7.4:+79553951 | None:intergenic |
| ATGGGAAGATGTTGTTGGTT+TGG | 0.440303 | 7.4:-79556329 | MS.gene56127:CDS |
| GGCGATGGAAATGGAGGATG+TGG | 0.441098 | 7.4:-79556137 | MS.gene56127:CDS |
| AGCGGAAGGATGAGCAATCA+AGG | 0.450406 | 7.4:+79553797 | None:intergenic |
| TCCAAATACATGTTGATCTC+AGG | 0.450525 | 7.4:-79555085 | MS.gene56127:CDS |
| TATTCGCCGGATCTGATGTT+TGG | 0.451448 | 7.4:-79556010 | MS.gene56127:CDS |
| GTCGCCGCCGAACCGTTTCA+AGG | 0.453015 | 7.4:-79556478 | MS.gene56127:CDS |
| GTCGAGGAAGGCGATGGAAA+TGG | 0.460472 | 7.4:-79556146 | MS.gene56127:CDS |
| GGCGGATGGGAAGATGTTGT+TGG | 0.465290 | 7.4:-79556334 | MS.gene56127:CDS |
| TCCTTTCATGAAAAGGAAGA+AGG | 0.472514 | 7.4:+79553958 | None:intergenic |
| CGGTGAGCCTTGAAACGGTT+CGG | 0.486631 | 7.4:+79556471 | None:intergenic |
| TTCATGCAAAGGGAGTTCTA+TGG | 0.498393 | 7.4:-79556276 | MS.gene56127:CDS |
| CCGGATCTGATGTTTGGTTG+GGG | 0.504652 | 7.4:-79556004 | MS.gene56127:CDS |
| GCTTTCTCACGGCGGTGAGG+TGG | 0.510480 | 7.4:-79556197 | MS.gene56127:CDS |
| TTGAAACGGTTCGGCGGCGA+CGG | 0.513115 | 7.4:+79556480 | None:intergenic |
| CCCCAACCAAACATCAGATC+CGG | 0.514075 | 7.4:+79556004 | None:intergenic |
| AAGCGATTGATGATGCGATT+CGG | 0.515226 | 7.4:-79556039 | MS.gene56127:CDS |
| AACATCTTCCCATCCGCCGC+CGG | 0.520802 | 7.4:+79556339 | None:intergenic |
| GACCGGAACGACGAGATCTA+CGG | 0.529140 | 7.4:+79556384 | None:intergenic |
| CTCTCCGCCGACGCTTTCAC+CGG | 0.531359 | 7.4:-79556358 | MS.gene56127:CDS |
| TGTTCAAGAGGTGAAGTTGT+TGG | 0.532126 | 7.4:-79555972 | MS.gene56127:CDS |
| GACGCCGGTGAGCCTTGAAA+CGG | 0.535502 | 7.4:+79556466 | None:intergenic |
| CTTCAACGTCTTCATGCAAA+GGG | 0.536724 | 7.4:-79556286 | MS.gene56127:CDS |
| CAAGTTTGACCATCATTCAC+AGG | 0.539201 | 7.4:+79555109 | None:intergenic |
| TGACGGAAACTGTTTATTCA+CGG | 0.540156 | 7.4:-79556170 | MS.gene56127:CDS |
| ATGGAAGCCACCGGCTAATG+TGG | 0.541192 | 7.4:-79556257 | MS.gene56127:CDS |
| CCTCACCGCCGTGAGAAAGC+CGG | 0.546216 | 7.4:+79556200 | None:intergenic |
| GCCGACGCTTTCACCGGCGG+CGG | 0.546801 | 7.4:-79556352 | MS.gene56127:CDS |
| GTTTCAAGGCTCACCGGCGT+CGG | 0.548802 | 7.4:-79556464 | MS.gene56127:CDS |
| CTATTTAAGGTGCAAGCGCA+TGG | 0.549806 | 7.4:-79554058 | MS.gene56127:intron |
| TCTTGGGAAACAACAGCGGA+AGG | 0.552492 | 7.4:+79553783 | None:intergenic |
| GGGTATTCATGTTGTTCAAG+AGG | 0.554732 | 7.4:-79555984 | MS.gene56127:CDS |
| GGAGATGAATCCACATTAGC+CGG | 0.555277 | 7.4:+79556247 | None:intergenic |
| AAACGGTTCGGCGGCGACGG+TGG | 0.555640 | 7.4:+79556483 | None:intergenic |
| CCTTTCATGAAAAGGAAGAA+GGG | 0.557227 | 7.4:+79553959 | None:intergenic |
| CGCTCCTTGGACGATGTGGA+AGG | 0.557946 | 7.4:+79553996 | None:intergenic |
| ATGGTGTCCATTTGTGTCGT+CGG | 0.558619 | 7.4:+79556415 | None:intergenic |
| GAGATCTACGGTGGTTCCGA+TGG | 0.559262 | 7.4:+79556396 | None:intergenic |
| CTGTGAATGATGGTCAAACT+TGG | 0.559285 | 7.4:-79555108 | MS.gene56127:CDS |
| TTTATTCACGGCGTCGAGGA+AGG | 0.561951 | 7.4:-79556158 | MS.gene56127:CDS |
| GCGTCGGCGGAGAGATTGAC+CGG | 0.562030 | 7.4:+79556367 | None:intergenic |
| TCTTCAACGTCTTCATGCAA+AGG | 0.564099 | 7.4:-79556287 | MS.gene56127:CDS |
| TTCAATACCTTTGCATGCCG+AGG | 0.570188 | 7.4:+79555897 | None:intergenic |
| TGGATGCGAAGGAGCTGAGA+CGG | 0.575334 | 7.4:-79556117 | MS.gene56127:CDS |
| ATCCAAGGAAGCGCCGACGC+CGG | 0.576960 | 7.4:+79556451 | None:intergenic |
| ATTTCGCTCCTTGGACGATG+TGG | 0.577563 | 7.4:+79553992 | None:intergenic |
| TTCCCAAGAAAAGGTTGCTG+TGG | 0.582631 | 7.4:-79553769 | MS.gene56127:CDS |
| TCGTTCACCTCGGCATGCAA+AGG | 0.584139 | 7.4:-79555904 | MS.gene56127:intron |
| TGTTGGCGAAGAAGGAGGAT+CGG | 0.589401 | 7.4:-79555955 | MS.gene56127:CDS |
| CACATTGCAATATACTGAGG+AGG | 0.589931 | 7.4:-79555035 | MS.gene56127:CDS |
| GGCGATTTGGAATCGATCCA+AGG | 0.591777 | 7.4:+79556436 | None:intergenic |
| TCCGCCGCCGGTGAAAGCGT+CGG | 0.601711 | 7.4:+79556351 | None:intergenic |
| TTCTGATTGAAGAGAAATGG+CGG | 0.601742 | 7.4:-79555161 | MS.gene56127:intron |
| CACGGCGTCGAGGAAGGCGA+TGG | 0.606677 | 7.4:-79556152 | MS.gene56127:CDS |
| CCGGCTTTCTCACGGCGGTG+AGG | 0.607110 | 7.4:-79556200 | MS.gene56127:CDS |
| ACTGTTTATTCACGGCGTCG+AGG | 0.610272 | 7.4:-79556162 | MS.gene56127:CDS |
| GGCGGTGAGGTGGAATCTGA+CGG | 0.610608 | 7.4:-79556187 | MS.gene56127:CDS |
| GAAGTTGTTGGCGAAGAAGG+AGG | 0.610676 | 7.4:-79555960 | MS.gene56127:CDS |
| ACATTGCAATATACTGAGGA+GGG | 0.610775 | 7.4:-79555034 | MS.gene56127:CDS |
| TTTCGACACACAGGTTGGTG+CGG | 0.610926 | 7.4:-79553843 | MS.gene56127:intron |
| GGGAGTTCTATGGAAGCCAC+CGG | 0.611285 | 7.4:-79556266 | MS.gene56127:CDS |
| AGATGTATTCCTGTGAATGA+TGG | 0.613329 | 7.4:-79555118 | MS.gene56127:CDS |
| CGAACCGTTTCAAGGCTCAC+CGG | 0.616314 | 7.4:-79556470 | MS.gene56127:CDS |
| TCCGCCGACGCTTTCACCGG+CGG | 0.617092 | 7.4:-79556355 | MS.gene56127:CDS |
| GCCGCCGGTGAAAGCGTCGG+CGG | 0.619728 | 7.4:+79556354 | None:intergenic |
| ACAACAGATCTCAGATCTGA+CGG | 0.622765 | 7.4:+79556226 | None:intergenic |
| GATTCGGCATATGTATTCGC+CGG | 0.624521 | 7.4:-79556023 | MS.gene56127:CDS |
| GAGGAAGGCGATGGAAATGG+AGG | 0.628424 | 7.4:-79556143 | MS.gene56127:CDS |
| GTTCAAGCGTGAGATATATG+TGG | 0.628710 | 7.4:-79554930 | MS.gene56127:intron |
| GCGGAAGGATGAGCAATCAA+GGG | 0.633766 | 7.4:+79553798 | None:intergenic |
| GAGCAATCAAGGGCTCATAG+TGG | 0.635024 | 7.4:+79553808 | None:intergenic |
| TGAGCCTTGAAACGGTTCGG+CGG | 0.636388 | 7.4:+79556474 | None:intergenic |
| ATCTGTAGATGAGAATAGAG+AGG | 0.637450 | 7.4:-79555005 | MS.gene56127:CDS |
| GAAGGAGCTGAGACGGAGAA+CGG | 0.641754 | 7.4:-79556110 | MS.gene56127:CDS |
| ACGACACAAATGGACACCAT+CGG | 0.648921 | 7.4:-79556412 | MS.gene56127:CDS |
| AATGGAGGATGTGGATGCGA+AGG | 0.650361 | 7.4:-79556128 | MS.gene56127:CDS |
| AGCGCATGGTTCAGATGCAA+TGG | 0.652317 | 7.4:-79554044 | MS.gene56127:CDS |
| TCTGTAGATGAGAATAGAGA+GGG | 0.658077 | 7.4:-79555004 | MS.gene56127:CDS |
| CATCACATTGCAATATACTG+AGG | 0.673453 | 7.4:-79555038 | MS.gene56127:CDS |
| TGATTGAAGAGAAATGGCGG+CGG | 0.679947 | 7.4:-79555158 | MS.gene56127:intron |
| GATGAATCCACATTAGCCGG+TGG | 0.691789 | 7.4:+79556250 | None:intergenic |
| ATCGACGAACTCGTTCACCT+CGG | 0.715329 | 7.4:-79555914 | MS.gene56127:CDS |
| CGGAACGACGAGATCTACGG+TGG | 0.742412 | 7.4:+79556387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTTGGAAAATTGAT+GGG | - | chr7.4:79555654-79555673 | MS.gene56127:intron | 15.0% |
| !!! | ACCATTTTAAATTTTAAAAG+AGG | + | chr7.4:79556385-79556404 | None:intergenic | 15.0% |
| !!! | TCCTCTTTTAAAATTTAAAA+TGG | - | chr7.4:79556381-79556400 | MS.gene56127:CDS | 15.0% |
| !!! | TTTAGAATTGTTGATTTTTA+AGG | - | chr7.4:79554602-79554621 | MS.gene56127:intron | 15.0% |
| !!! | TTTGTTCAATATGTTTTTAA+GGG | - | chr7.4:79554579-79554598 | MS.gene56127:intron | 15.0% |
| !! | AAATGTGTCAAAAACTAAAT+TGG | - | chr7.4:79554870-79554889 | MS.gene56127:intron | 20.0% |
| !! | AAGATTTGATTATATGATTC+CGG | - | chr7.4:79556070-79556089 | MS.gene56127:CDS | 20.0% |
| !! | AATGTGTCAAAAACTAAATT+GGG | - | chr7.4:79554871-79554890 | MS.gene56127:intron | 20.0% |
| !! | ATTATAGTCTGGAAATTATT+TGG | - | chr7.4:79555642-79555661 | MS.gene56127:intron | 20.0% |
| !! | GAAATTATTTGGAAAATTGA+TGG | - | chr7.4:79555653-79555672 | MS.gene56127:intron | 20.0% |
| !!! | GTTTGTTCAATATGTTTTTA+AGG | - | chr7.4:79554578-79554597 | MS.gene56127:intron | 20.0% |
| !!! | GTTTTTGACACATTTTTATT+CGG | + | chr7.4:79554865-79554884 | None:intergenic | 20.0% |
| !!! | TGGTTTTTTTTTAATGGATT+AGG | - | chr7.4:79555517-79555536 | MS.gene56127:intron | 20.0% |
| !!! | TGTCAATGGTTTTTTTTTAA+TGG | - | chr7.4:79555511-79555530 | MS.gene56127:intron | 20.0% |
| !!! | TTTATTGTGTCTTGTTTTAT+TGG | - | chr7.4:79555045-79555064 | MS.gene56127:CDS | 20.0% |
| !!! | TTTTAAAATTTGTCTCTTTG+TGG | - | chr7.4:79556121-79556140 | MS.gene56127:CDS | 20.0% |
| ! | AAAAATTAGAGAGACCAAAT+TGG | - | chr7.4:79554900-79554919 | MS.gene56127:intron | 25.0% |
| ! | AAAATTAGAGAGACCAAATT+GGG | - | chr7.4:79554901-79554920 | MS.gene56127:intron | 25.0% |
| ! | AGATTTGATTATATGATTCC+GGG | - | chr7.4:79556071-79556090 | MS.gene56127:CDS | 25.0% |
| ! | ATAAAACAAGTAGGAAAGAA+AGG | + | chr7.4:79555585-79555604 | None:intergenic | 25.0% |
| ! | ATGATATCATATTCATCATC+AGG | + | chr7.4:79555214-79555233 | None:intergenic | 25.0% |
| ! | CATGTAATGGTAACTATAAA+AGG | + | chr7.4:79556040-79556059 | None:intergenic | 25.0% |
| ! | CTGTTATATATGTCAAGTAT+TGG | - | chr7.4:79555859-79555878 | MS.gene56127:intron | 25.0% |
| ! | GAATGTTCTTCATCTATTTA+AGG | - | chr7.4:79556198-79556217 | MS.gene56127:CDS | 25.0% |
| ! | TACTTGACATATATAACAGA+TGG | + | chr7.4:79555858-79555877 | None:intergenic | 25.0% |
| ! | TGCATTAACTTTCAATATTC+TGG | + | chr7.4:79556099-79556118 | None:intergenic | 25.0% |
| ! | TTTAAAAGAGGAAGCAAAAA+AGG | + | chr7.4:79556373-79556392 | None:intergenic | 25.0% |
| !! | CAAACTACATTTTTATACTG+TGG | - | chr7.4:79554792-79554811 | MS.gene56127:intron | 25.0% |
| !! | TTTTTCTGATTGAAGAGAAA+TGG | - | chr7.4:79555105-79555124 | MS.gene56127:CDS | 25.0% |
| !!! | AAGAGATTTTTGGAAGATTA+TGG | - | chr7.4:79554184-79554203 | MS.gene56127:intron | 25.0% |
| !!! | CAAACGTTTTGAACATATTT+TGG | - | chr7.4:79554987-79555006 | MS.gene56127:CDS | 25.0% |
| !!! | TGTTTTGTTCAATTATAGTC+TGG | - | chr7.4:79555631-79555650 | MS.gene56127:intron | 25.0% |
| !!! | TTATATATGTCAAGTATTGG+TGG | - | chr7.4:79555862-79555881 | MS.gene56127:intron | 25.0% |
| !!! | TTGATTTGTGTACATATTTG+TGG | - | chr7.4:79556147-79556166 | MS.gene56127:CDS | 25.0% |
| AGTTACCATTACATGTAACA+TGG | - | chr7.4:79556045-79556064 | MS.gene56127:CDS | 30.0% | |
| ATAGATGAAGAACATTCAGA+TGG | + | chr7.4:79556195-79556214 | None:intergenic | 30.0% | |
| ATATATGTGGTAAGAAATGC+AGG | - | chr7.4:79555352-79555371 | MS.gene56127:intron | 30.0% | |
| CATGCAATGTAACATGTTAT+CGG | + | chr7.4:79555469-79555488 | None:intergenic | 30.0% | |
| GAATGAGAAAACAAGAAACT+TGG | + | chr7.4:79555990-79556009 | None:intergenic | 30.0% | |
| TAAGAAAACAAGACCCAATT+TGG | + | chr7.4:79554917-79554936 | None:intergenic | 30.0% | |
| TAGAATCTCAAGATTGTCAA+TGG | - | chr7.4:79555497-79555516 | MS.gene56127:intron | 30.0% | |
| TCAAGTATAGTATTCTGTGT+TGG | - | chr7.4:79555824-79555843 | MS.gene56127:intron | 30.0% | |
| TGAACAGCTATAAAACAAGT+AGG | + | chr7.4:79555594-79555613 | None:intergenic | 30.0% | |
| ! | TCATTGAGTGATTGATTTAG+TGG | + | chr7.4:79555694-79555713 | None:intergenic | 30.0% |
| !!! | AGTTTCTTGTTTTCTCATTC+TGG | - | chr7.4:79555990-79556009 | MS.gene56127:CDS | 30.0% |
| !!! | GCTTTTGAGACTTTATGATT+GGG | - | chr7.4:79555944-79555963 | MS.gene56127:CDS | 30.0% |
| !!! | TGCTTTTGAGACTTTATGAT+TGG | - | chr7.4:79555943-79555962 | MS.gene56127:CDS | 30.0% |
| AAACTTCAAGTCTCCATTGA+AGG | + | chr7.4:79555380-79555399 | None:intergenic | 35.0% | |
| AAATTGGGCCGAGAAAAAAT+TGG | + | chr7.4:79554750-79554769 | None:intergenic | 35.0% | |
| AATTGGGCCGAGAAAAAATT+GGG | + | chr7.4:79554749-79554768 | None:intergenic | 35.0% | |
| ACATTGCAATATACTGAGGA+GGG | - | chr7.4:79555235-79555254 | MS.gene56127:intron | 35.0% | |
| ACCTGAGATCAACATGTATT+TGG | + | chr7.4:79555188-79555207 | None:intergenic | 35.0% | |
| AGATGTATTCCTGTGAATGA+TGG | - | chr7.4:79555151-79555170 | MS.gene56127:CDS | 35.0% | |
| AGTAGGAAAGAAAGGATTGT+TGG | + | chr7.4:79555577-79555596 | None:intergenic | 35.0% | |
| ATCTGTAGATGAGAATAGAG+AGG | - | chr7.4:79555264-79555283 | MS.gene56127:intron | 35.0% | |
| ATGTGTTGTCGAGACTAAAT+TGG | + | chr7.4:79554766-79554785 | None:intergenic | 35.0% | |
| CAGGTCATAATCAAACACAT+TGG | + | chr7.4:79555916-79555935 | None:intergenic | 35.0% | |
| CATCACATTGCAATATACTG+AGG | - | chr7.4:79555231-79555250 | MS.gene56127:intron | 35.0% | |
| CCTTTCATGAAAAGGAAGAA+GGG | + | chr7.4:79556313-79556332 | None:intergenic | 35.0% | |
| CTTCACCATGTTACATGTAA+TGG | + | chr7.4:79556053-79556072 | None:intergenic | 35.0% | |
| TACACAAGTATATCTGCAAC+AGG | + | chr7.4:79555766-79555785 | None:intergenic | 35.0% | |
| TACCTGTTCCTTTCATGAAA+AGG | + | chr7.4:79556321-79556340 | None:intergenic | 35.0% | |
| TCCAAATACATGTTGATCTC+AGG | - | chr7.4:79555184-79555203 | MS.gene56127:intron | 35.0% | |
| TCCTTTCATGAAAAGGAAGA+AGG | + | chr7.4:79556314-79556333 | None:intergenic | 35.0% | |
| TCTGTAGATGAGAATAGAGA+GGG | - | chr7.4:79555265-79555284 | MS.gene56127:intron | 35.0% | |
| TGAAGACTTAAGACCCAATT+TGG | - | chr7.4:79554718-79554737 | MS.gene56127:intron | 35.0% | |
| TGACGGAAACTGTTTATTCA+CGG | - | chr7.4:79554099-79554118 | MS.gene56127:intron | 35.0% | |
| TGGAAAATTGATGGGATTAG+AGG | - | chr7.4:79555662-79555681 | MS.gene56127:intron | 35.0% | |
| TGTGTTGTCGAGACTAAATT+GGG | + | chr7.4:79554765-79554784 | None:intergenic | 35.0% | |
| TTATCGGAACAATCATTCAC+AGG | + | chr7.4:79555453-79555472 | None:intergenic | 35.0% | |
| TTCATGAAAGGAACAGGTAA+TGG | - | chr7.4:79556322-79556341 | MS.gene56127:CDS | 35.0% | |
| TTCTGATTGAAGAGAAATGG+CGG | - | chr7.4:79555108-79555127 | MS.gene56127:CDS | 35.0% | |
| ! | CTTAACAATTTTCGACACAC+AGG | - | chr7.4:79556417-79556436 | MS.gene56127:CDS | 35.0% |
| ! | GTCTCAAAAGCAGTTATTTC+AGG | + | chr7.4:79555935-79555954 | None:intergenic | 35.0% |
| ! | TTCCTTTTCATGAAAGGAAC+AGG | - | chr7.4:79556316-79556335 | MS.gene56127:CDS | 35.0% |
| !! | AAAATTGGGAGGTACCAAAT+TGG | + | chr7.4:79554735-79554754 | None:intergenic | 35.0% |
| !! | AAATTGGGAGGTACCAAATT+GGG | + | chr7.4:79554734-79554753 | None:intergenic | 35.0% |
| !! | ACTTTCAATATTCTGGAACC+CGG | + | chr7.4:79556092-79556111 | None:intergenic | 35.0% |
| !!! | ATCTGAGATCTGTTGTTTTC+CGG | - | chr7.4:79554050-79554069 | MS.gene56127:CDS | 35.0% |
| !!! | TGGTCTCTCTAATTTTTTCG+CGG | + | chr7.4:79554897-79554916 | None:intergenic | 35.0% |
| ACAACAGATCTCAGATCTGA+CGG | + | chr7.4:79554046-79554065 | None:intergenic | 40.0% | |
| AGAAATGCAGGAACCTTCAA+TGG | - | chr7.4:79555364-79555383 | MS.gene56127:intron | 40.0% | |
| CAAGTTTGACCATCATTCAC+AGG | + | chr7.4:79555163-79555182 | None:intergenic | 40.0% | |
| CACATTGCAATATACTGAGG+AGG | - | chr7.4:79555234-79555253 | MS.gene56127:intron | 40.0% | |
| CTGTGAATGATGGTCAAACT+TGG | - | chr7.4:79555161-79555180 | MS.gene56127:intron | 40.0% | |
| CTTCAACGTCTTCATGCAAA+GGG | - | chr7.4:79553983-79554002 | MS.gene56127:CDS | 40.0% | |
| GGGTATTCATGTTGTTCAAG+AGG | - | chr7.4:79554285-79554304 | MS.gene56127:intron | 40.0% | |
| GTTCAAGCGTGAGATATATG+TGG | - | chr7.4:79555339-79555358 | MS.gene56127:intron | 40.0% | |
| TCTTCAACGTCTTCATGCAA+AGG | - | chr7.4:79553982-79554001 | MS.gene56127:CDS | 40.0% | |
| TGTTCAAGAGGTGAAGTTGT+TGG | - | chr7.4:79554297-79554316 | MS.gene56127:intron | 40.0% | |
| TTCATGCAAAGGGAGTTCTA+TGG | - | chr7.4:79553993-79554012 | MS.gene56127:CDS | 40.0% | |
| ! | ACAATTTTCGACACACAGGT+TGG | - | chr7.4:79556421-79556440 | MS.gene56127:CDS | 40.0% |
| ! | ATGGGAAGATGTTGTTGGTT+TGG | - | chr7.4:79553940-79553959 | MS.gene56127:intron | 40.0% |
| ! | CCCTTCTTCCTTTTCATGAA+AGG | - | chr7.4:79556310-79556329 | MS.gene56127:CDS | 40.0% |
| ! | CTTTTCTTGGGAAACAACAG+CGG | + | chr7.4:79556493-79556512 | None:intergenic | 40.0% |
| ! | GAGAACGGTGAAGAGATTTT+TGG | - | chr7.4:79554174-79554193 | MS.gene56127:intron | 40.0% |
| ! | TACCACAGCAACCTTTTCTT+GGG | + | chr7.4:79556505-79556524 | None:intergenic | 40.0% |
| ! | TGAGTGATTGATTTAGTGGC+TGG | + | chr7.4:79555690-79555709 | None:intergenic | 40.0% |
| !! | AAGCGATTGATGATGCGATT+CGG | - | chr7.4:79554230-79554249 | MS.gene56127:intron | 40.0% |
| !! | ATATGTCAAGTATTGGTGGC+TGG | - | chr7.4:79555866-79555885 | MS.gene56127:intron | 40.0% |
| !!! | GGATCTGTGAGTTTTGAAGA+AGG | - | chr7.4:79554205-79554224 | MS.gene56127:intron | 40.0% |
| !!! | GGTACCTCCCAATTTTTTCT+CGG | - | chr7.4:79554739-79554758 | MS.gene56127:intron | 40.0% |
| ACGACACAAATGGACACCAT+CGG | - | chr7.4:79553857-79553876 | MS.gene56127:intron | 45.0% | |
| AGTTCTGCAATTTCGCTCCT+TGG | + | chr7.4:79556289-79556308 | None:intergenic | 45.0% | |
| ATGGTGTCCATTTGTGTCGT+CGG | + | chr7.4:79553857-79553876 | None:intergenic | 45.0% | |
| GATTCGGCATATGTATTCGC+CGG | - | chr7.4:79554246-79554265 | MS.gene56127:intron | 45.0% | |
| GGAGATGAATCCACATTAGC+CGG | + | chr7.4:79554025-79554044 | None:intergenic | 45.0% | |
| TATTCGCCGGATCTGATGTT+TGG | - | chr7.4:79554259-79554278 | MS.gene56127:intron | 45.0% | |
| TGATTGAAGAGAAATGGCGG+CGG | - | chr7.4:79555111-79555130 | MS.gene56127:CDS | 45.0% | |
| TTCAATACCTTTGCATGCCG+AGG | + | chr7.4:79554375-79554394 | None:intergenic | 45.0% | |
| TTCCCAAGAAAAGGTTGCTG+TGG | - | chr7.4:79556500-79556519 | MS.gene56127:CDS | 45.0% | |
| ! | CTATTTAAGGTGCAAGCGCA+TGG | - | chr7.4:79556211-79556230 | MS.gene56127:CDS | 45.0% |
| ! | GTACCACAGCAACCTTTTCT+TGG | + | chr7.4:79556506-79556525 | None:intergenic | 45.0% |
| ! | TTTTCCTTCCACATCGTCCA+AGG | - | chr7.4:79556269-79556288 | MS.gene56127:CDS | 45.0% |
| !! | CGCTGTTGTTTCCCAAGAAA+AGG | - | chr7.4:79556491-79556510 | MS.gene56127:CDS | 45.0% |
| !! | GTTGTTTTCCGGCTTTCTCA+CGG | - | chr7.4:79554061-79554080 | MS.gene56127:intron | 45.0% |
| AATGGAGGATGTGGATGCGA+AGG | - | chr7.4:79554141-79554160 | MS.gene56127:intron | 50.0% | |
| ACTGTTTATTCACGGCGTCG+AGG | - | chr7.4:79554107-79554126 | MS.gene56127:intron | 50.0% | |
| AGCGCATGGTTCAGATGCAA+TGG | - | chr7.4:79556225-79556244 | MS.gene56127:CDS | 50.0% | |
| AGCGGAAGGATGAGCAATCA+AGG | + | chr7.4:79556475-79556494 | None:intergenic | 50.0% | |
| ATCGACGAACTCGTTCACCT+CGG | - | chr7.4:79554355-79554374 | MS.gene56127:intron | 50.0% | |
| ATTTCGCTCCTTGGACGATG+TGG | + | chr7.4:79556280-79556299 | None:intergenic | 50.0% | |
| CAAATCGCCGACGACACAAA+TGG | - | chr7.4:79553847-79553866 | MS.gene56127:intron | 50.0% | |
| CATTTGTGTCGTCGGCGATT+TGG | + | chr7.4:79553849-79553868 | None:intergenic | 50.0% | |
| CCCCAACCAAACATCAGATC+CGG | + | chr7.4:79554268-79554287 | None:intergenic | 50.0% | |
| CCGGATCTGATGTTTGGTTG+GGG | - | chr7.4:79554265-79554284 | MS.gene56127:intron | 50.0% | |
| GAAGTTGTTGGCGAAGAAGG+AGG | - | chr7.4:79554309-79554328 | MS.gene56127:intron | 50.0% | |
| GAGCAATCAAGGGCTCATAG+TGG | + | chr7.4:79556464-79556483 | None:intergenic | 50.0% | |
| GATGAATCCACATTAGCCGG+TGG | + | chr7.4:79554022-79554041 | None:intergenic | 50.0% | |
| GCCGGATCTGATGTTTGGTT+GGG | - | chr7.4:79554264-79554283 | MS.gene56127:intron | 50.0% | |
| GCGGAAGGATGAGCAATCAA+GGG | + | chr7.4:79556474-79556493 | None:intergenic | 50.0% | |
| GGTGAAGTTGTTGGCGAAGA+AGG | - | chr7.4:79554306-79554325 | MS.gene56127:intron | 50.0% | |
| TCTTGGGAAACAACAGCGGA+AGG | + | chr7.4:79556489-79556508 | None:intergenic | 50.0% | |
| TGGGCCGAGAAAAAATTGGG+AGG | + | chr7.4:79554746-79554765 | None:intergenic | 50.0% | |
| TGTTGGCGAAGAAGGAGGAT+CGG | - | chr7.4:79554314-79554333 | MS.gene56127:intron | 50.0% | |
| ! | GGCGATTTGGAATCGATCCA+AGG | + | chr7.4:79553836-79553855 | None:intergenic | 50.0% |
| ! | TTTATTCACGGCGTCGAGGA+AGG | - | chr7.4:79554111-79554130 | MS.gene56127:intron | 50.0% |
| !! | TTTCGACACACAGGTTGGTG+CGG | - | chr7.4:79556426-79556445 | MS.gene56127:CDS | 50.0% |
| CACCGTAGATCTCGTCGTTC+CGG | - | chr7.4:79553883-79553902 | MS.gene56127:intron | 55.0% | |
| CGAACCGTTTCAAGGCTCAC+CGG | - | chr7.4:79553799-79553818 | MS.gene56127:CDS | 55.0% | |
| CGCCGGATCTGATGTTTGGT+TGG | - | chr7.4:79554263-79554282 | MS.gene56127:intron | 55.0% | |
| CGGTGAGCCTTGAAACGGTT+CGG | + | chr7.4:79553801-79553820 | None:intergenic | 55.0% | |
| GAAGGAGCTGAGACGGAGAA+CGG | - | chr7.4:79554159-79554178 | MS.gene56127:intron | 55.0% | |
| GACCGGAACGACGAGATCTA+CGG | + | chr7.4:79553888-79553907 | None:intergenic | 55.0% | |
| GAGATCTACGGTGGTTCCGA+TGG | + | chr7.4:79553876-79553895 | None:intergenic | 55.0% | |
| GAGGAAGGCGATGGAAATGG+AGG | - | chr7.4:79554126-79554145 | MS.gene56127:intron | 55.0% | |
| GGCGATGGAAATGGAGGATG+TGG | - | chr7.4:79554132-79554151 | MS.gene56127:intron | 55.0% | |
| GGCGGATGGGAAGATGTTGT+TGG | - | chr7.4:79553935-79553954 | MS.gene56127:intron | 55.0% | |
| GGGAGTTCTATGGAAGCCAC+CGG | - | chr7.4:79554003-79554022 | MS.gene56127:CDS | 55.0% | |
| GTCGAGGAAGGCGATGGAAA+TGG | - | chr7.4:79554123-79554142 | MS.gene56127:intron | 55.0% | |
| TCGTTCACCTCGGCATGCAA+AGG | - | chr7.4:79554365-79554384 | MS.gene56127:intron | 55.0% | |
| TGGATGCGAAGGAGCTGAGA+CGG | - | chr7.4:79554152-79554171 | MS.gene56127:intron | 55.0% | |
| ! | ATGGAAGCCACCGGCTAATG+TGG | - | chr7.4:79554012-79554031 | MS.gene56127:CDS | 55.0% |
| ! | GTTTTCCGGCTTTCTCACGG+CGG | - | chr7.4:79554064-79554083 | MS.gene56127:intron | 55.0% |
| ! | TGAGCCTTGAAACGGTTCGG+CGG | + | chr7.4:79553798-79553817 | None:intergenic | 55.0% |
| !! | GTCAAGTATTGGTGGCTGGC+TGG | - | chr7.4:79555870-79555889 | MS.gene56127:intron | 55.0% |
| AACATCTTCCCATCCGCCGC+CGG | + | chr7.4:79553933-79553952 | None:intergenic | 60.0% | |
| CGCTCCTTGGACGATGTGGA+AGG | + | chr7.4:79556276-79556295 | None:intergenic | 60.0% | |
| CGGAACGACGAGATCTACGG+TGG | + | chr7.4:79553885-79553904 | None:intergenic | 60.0% | |
| GACGCCGGTGAGCCTTGAAA+CGG | + | chr7.4:79553806-79553825 | None:intergenic | 60.0% | |
| GAGGGTCGTGCTGCAGCTTT+CGG | - | chr7.4:79555283-79555302 | MS.gene56127:intron | 60.0% | |
| GGCGGTGAGGTGGAATCTGA+CGG | - | chr7.4:79554082-79554101 | MS.gene56127:intron | 60.0% | |
| GTTTCAAGGCTCACCGGCGT+CGG | - | chr7.4:79553805-79553824 | MS.gene56127:CDS | 60.0% | |
| ! | TTGAAACGGTTCGGCGGCGA+CGG | + | chr7.4:79553792-79553811 | None:intergenic | 60.0% |
| CCTCACCGCCGTGAGAAAGC+CGG | + | chr7.4:79554072-79554091 | None:intergenic | 65.0% | |
| CTCTCCGCCGACGCTTTCAC+CGG | - | chr7.4:79553911-79553930 | MS.gene56127:intron | 65.0% | |
| GCTTTCTCACGGCGGTGAGG+TGG | - | chr7.4:79554072-79554091 | MS.gene56127:intron | 65.0% | |
| GTCGCCGCCGAACCGTTTCA+AGG | - | chr7.4:79553791-79553810 | MS.gene56127:CDS | 65.0% | |
| ! | GCGTCGGCGGAGAGATTGAC+CGG | + | chr7.4:79553905-79553924 | None:intergenic | 65.0% |
| !! | ATCCAAGGAAGCGCCGACGC+CGG | + | chr7.4:79553821-79553840 | None:intergenic | 65.0% |
| !! | CACACAGGTTGGTGCGGTGC+TGG | - | chr7.4:79556432-79556451 | MS.gene56127:CDS | 65.0% |
| ACGCTTTCACCGGCGGCGGA+TGG | - | chr7.4:79553921-79553940 | MS.gene56127:intron | 70.0% | |
| CCGGCTTTCTCACGGCGGTG+AGG | - | chr7.4:79554069-79554088 | MS.gene56127:intron | 70.0% | |
| CGCTTTCACCGGCGGCGGAT+GGG | - | chr7.4:79553922-79553941 | MS.gene56127:intron | 70.0% | |
| TCCGCCGACGCTTTCACCGG+CGG | - | chr7.4:79553914-79553933 | MS.gene56127:intron | 70.0% | |
| ! | AAACGGTTCGGCGGCGACGG+TGG | + | chr7.4:79553789-79553808 | None:intergenic | 70.0% |
| ! | CACGGCGTCGAGGAAGGCGA+TGG | - | chr7.4:79554117-79554136 | MS.gene56127:intron | 70.0% |
| ! | TCCGCCGCCGGTGAAAGCGT+CGG | + | chr7.4:79553921-79553940 | None:intergenic | 70.0% |
| GCCGACGCTTTCACCGGCGG+CGG | - | chr7.4:79553917-79553936 | MS.gene56127:intron | 75.0% | |
| !! | CACCGGCGTCGGCGCTTCCT+TGG | - | chr7.4:79553816-79553835 | MS.gene56127:CDS | 75.0% |
| !! | GCCGCCGGTGAAAGCGTCGG+CGG | + | chr7.4:79553918-79553937 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 79553761 | 79556530 | 79553761 | ID=MS.gene56127 |
| chr7.4 | mRNA | 79553761 | 79556530 | 79553761 | ID=MS.gene56127.t1;Parent=MS.gene56127 |
| chr7.4 | exon | 79555905 | 79556530 | 79555905 | ID=MS.gene56127.t1.exon1;Parent=MS.gene56127.t1 |
| chr7.4 | CDS | 79555905 | 79556530 | 79555905 | ID=cds.MS.gene56127.t1;Parent=MS.gene56127.t1 |
| chr7.4 | exon | 79554931 | 79555171 | 79554931 | ID=MS.gene56127.t1.exon2;Parent=MS.gene56127.t1 |
| chr7.4 | CDS | 79554931 | 79555171 | 79554931 | ID=cds.MS.gene56127.t1;Parent=MS.gene56127.t1 |
| chr7.4 | exon | 79553954 | 79554071 | 79553954 | ID=MS.gene56127.t1.exon3;Parent=MS.gene56127.t1 |
| chr7.4 | CDS | 79553954 | 79554071 | 79553954 | ID=cds.MS.gene56127.t1;Parent=MS.gene56127.t1 |
| chr7.4 | exon | 79553761 | 79553852 | 79553761 | ID=MS.gene56127.t1.exon4;Parent=MS.gene56127.t1 |
| chr7.4 | CDS | 79553761 | 79553852 | 79553761 | ID=cds.MS.gene56127.t1;Parent=MS.gene56127.t1 |
| Gene Sequence |
| Protein sequence |
