AlfalfaGEDB | MS.gene56596

M. sativa cultivar XinJiangDaYe / MS.gene56596

KEGG: -
GO: -
PFAM: PF07983.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56596.t1	XP_013464448.2	98.2	113	2	0	1	113	1	113	4.20E-60	240.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56596.t1	P52409	45.8	83	45	0	30	112	377	459	2.0e-18	93.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56596.t1	I3SE25	98.2	113	2	0	1	113	1	113	3.0e-60	240.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene56596	0.84053	8.22E-58	-1.69E-46
MS.gene049622	MS.gene56596	0.815901	7.29E-52	-1.69E-46
MS.gene04985	MS.gene56596	0.800189	1.62E-48	-1.69E-46
MS.gene049989	MS.gene56596	0.845468	3.99E-59	-1.69E-46
MS.gene050297	MS.gene56596	0.830096	3.56E-55	-1.69E-46
MS.gene051067	MS.gene56596	0.803564	3.28E-49	-1.69E-46
MS.gene051263	MS.gene56596	0.829849	4.09E-55	-1.69E-46
MS.gene051478	MS.gene56596	0.814585	1.43E-51	-1.69E-46
MS.gene052367	MS.gene56596	0.832252	1.05E-55	-1.69E-46
MS.gene053416	MS.gene56596	0.81101	8.67E-51	-1.69E-46
MS.gene053417	MS.gene56596	0.815643	8.32E-52	-1.69E-46
MS.gene055957	MS.gene56596	0.814503	1.49E-51	-1.69E-46
MS.gene056041	MS.gene56596	0.806117	9.61E-50	-1.69E-46
MS.gene056228	MS.gene56596	0.835815	1.35E-56	-1.69E-46
MS.gene058196	MS.gene56596	0.803029	4.24E-49	-1.69E-46
MS.gene058197	MS.gene56596	0.833636	4.76E-56	-1.69E-46
MS.gene058198	MS.gene56596	0.830774	2.43E-55	-1.69E-46
MS.gene059300	MS.gene56596	0.83835	3.03E-57	-1.69E-46
MS.gene060473	MS.gene56596	0.824201	9.18E-54	-1.69E-46
MS.gene060565	MS.gene56596	0.821445	4.02E-53	-1.69E-46
MS.gene06057	MS.gene56596	0.820728	5.88E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56596.t1	MTR_2g072500	97.802	91	2	0	23	113	1	91	2.44e-65	192
MS.gene56596.t1	MTR_8g089400	42.268	97	53	2	19	113	27	122	2.41e-22	85.9
MS.gene56596.t1	MTR_8g089400	42.268	97	53	2	19	113	47	142	4.59e-22	85.5
MS.gene56596.t1	MTR_7g026340	48.193	83	42	1	29	110	364	446	2.69e-21	87.4
MS.gene56596.t1	MTR_8g085440	44.565	92	50	1	22	112	24	115	1.14e-20	80.5
MS.gene56596.t1	MTR_8g085400	41.441	111	56	4	1	106	1	107	4.38e-19	76.3
MS.gene56596.t1	MTR_8g085420	44.318	88	48	1	22	108	24	111	6.95e-19	76.6
MS.gene56596.t1	MTR_1g084820	45.161	93	48	3	17	108	408	498	4.18e-18	78.6
MS.gene56596.t1	MTR_1g084820	45.161	93	48	3	17	108	408	498	6.74e-18	78.2
MS.gene56596.t1	MTR_6g088885	41.758	91	49	2	25	112	365	454	8.96e-18	77.8
MS.gene56596.t1	MTR_4g083500	39.535	86	51	1	28	112	400	485	1.21e-17	77.4
MS.gene56596.t1	MTR_1g022160	40.449	89	52	1	25	112	386	474	2.30e-17	76.6
MS.gene56596.t1	MTR_3g116510	41.176	85	49	1	30	113	237	321	2.55e-17	75.9
MS.gene56596.t1	MTR_3g116510	41.176	85	49	1	30	113	371	455	3.37e-17	75.9
MS.gene56596.t1	MTR_3g083580	37.374	99	60	1	17	113	349	447	5.56e-17	75.5
MS.gene56596.t1	MTR_1g031900	36.634	101	60	2	17	113	346	446	7.77e-17	75.1
MS.gene56596.t1	MTR_1g031900	36.634	101	60	2	17	113	346	446	8.21e-17	75.1
MS.gene56596.t1	MTR_7g111600	45.882	85	43	2	30	112	160	243	1.03e-16	73.2
MS.gene56596.t1	MTR_8g085390	36.607	112	63	3	5	112	6	113	1.05e-16	72.0
MS.gene56596.t1	MTR_1g053320	43.529	85	46	2	27	110	371	454	1.11e-16	74.7
MS.gene56596.t1	MTR_4g069940	40.000	85	49	1	30	112	375	459	1.36e-16	74.3
MS.gene56596.t1	MTR_7g111600	45.882	85	43	2	30	112	160	243	1.55e-16	73.6
MS.gene56596.t1	MTR_5g078200	35.000	100	61	2	17	112	345	444	1.75e-16	73.9
MS.gene56596.t1	MTR_1g056640	40.206	97	55	2	17	110	392	488	1.75e-16	73.9
MS.gene56596.t1	MTR_5g078200	34.579	107	67	2	8	112	306	411	2.05e-16	73.9
MS.gene56596.t1	MTR_8g102340	35.294	102	63	2	13	112	318	418	2.83e-16	73.6
MS.gene56596.t1	MTR_7g111600	45.882	85	43	2	30	112	160	243	3.73e-16	72.4
MS.gene56596.t1	MTR_4g132280	39.080	87	51	1	28	112	380	466	7.11e-16	72.4
MS.gene56596.t1	MTR_3g065460	36.000	100	60	2	17	112	346	445	1.13e-15	71.6
MS.gene56596.t1	MTR_5g085580	38.095	84	50	1	29	110	381	464	1.62e-15	71.2
MS.gene56596.t1	MTR_5g091650	37.895	95	56	2	20	112	98	191	5.21e-15	67.8
MS.gene56596.t1	MTR_5g097420	32.432	111	67	2	4	112	10	114	5.98e-15	65.9
MS.gene56596.t1	MTR_5g091650	37.895	95	56	2	20	112	98	191	7.11e-15	68.6
MS.gene56596.t1	MTR_4g079530	37.500	88	53	1	27	112	34	121	1.18e-14	65.5
MS.gene56596.t1	MTR_4g109490	41.667	84	47	2	30	112	24	106	1.45e-14	67.0
MS.gene56596.t1	MTR_4g079530	37.500	88	53	1	27	112	34	121	2.19e-14	65.9
MS.gene56596.t1	MTR_1g022160	37.931	87	53	1	25	110	386	472	2.28e-14	67.8
MS.gene56596.t1	MTR_5g015720	39.326	89	51	1	27	112	326	414	6.64e-14	66.6
MS.gene56596.t1	MTR_3g048280	36.264	91	55	2	24	112	106	195	1.41e-13	64.3
MS.gene56596.t1	MTR_8g012400	36.264	91	48	3	28	112	372	458	1.54e-13	65.5
MS.gene56596.t1	MTR_8g012400	36.264	91	48	3	28	112	292	378	1.79e-13	65.5
MS.gene56596.t1	MTR_1g022160	37.805	82	50	1	25	105	386	467	2.19e-13	65.1
MS.gene56596.t1	MTR_1g116870	38.095	84	51	1	30	112	276	359	2.93e-13	64.7
MS.gene56596.t1	MTR_2g049670	42.353	85	47	2	30	113	158	241	1.22e-12	62.8
MS.gene56596.t1	MTR_4g112025	37.931	87	52	2	27	112	371	456	1.49e-12	62.8
MS.gene56596.t1	MTR_8g085720	36.538	104	62	2	13	112	345	448	1.59e-12	62.8
MS.gene56596.t1	MTR_3g082080	37.179	78	48	1	30	106	157	234	9.95e-12	59.7
MS.gene56596.t1	MTR_4g083070	34.545	110	61	5	6	112	4	105	1.30e-11	58.9
MS.gene56596.t1	MTR_4g133735	29.464	112	71	2	1	110	5	110	4.40e-11	55.8
MS.gene56596.t1	MTR_2g027560	34.940	83	53	1	30	112	369	450	7.63e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56596.t1	AT1G78520	63.158	114	40	2	1	112	1	114	1.33e-47	148
MS.gene56596.t1	AT2G43670	50.427	117	53	2	1	112	1	117	2.32e-37	122
MS.gene56596.t1	AT2G43660	45.378	119	58	3	1	112	1	119	8.54e-29	101
MS.gene56596.t1	AT2G43660	44.915	118	59	2	1	112	1	118	3.28e-28	99.8
MS.gene56596.t1	AT3G28250	53.247	77	36	0	30	106	3	79	6.91e-27	96.3
MS.gene56596.t1	AT4G09462	43.590	117	58	3	1	113	1	113	3.51e-26	94.4
MS.gene56596.t1	AT4G09467	43.478	115	63	2	1	113	1	115	8.51e-26	93.6
MS.gene56596.t1	AT4G09464	43.478	115	63	2	1	113	1	115	8.51e-26	93.6
MS.gene56596.t1	AT4G09465	43.478	115	63	2	1	113	1	115	1.45e-25	92.8
MS.gene56596.t1	AT5G53600	41.935	93	54	0	20	112	19	111	1.03e-23	88.2
MS.gene56596.t1	AT4G09466	41.739	115	65	2	1	113	1	115	1.20e-23	88.2
MS.gene56596.t1	AT4G09090	42.105	114	64	2	1	112	1	114	6.33e-23	86.3
MS.gene56596.t1	AT1G66852	42.045	88	48	2	28	113	24	110	3.96e-21	81.3
MS.gene56596.t1	AT1G66870	41.379	87	49	1	28	112	24	110	6.22e-21	80.9
MS.gene56596.t1	AT1G66870	41.379	87	49	1	28	112	51	137	9.82e-21	81.3
MS.gene56596.t1	AT1G09460	48.387	93	46	2	20	112	128	218	2.27e-20	84.0
MS.gene56596.t1	AT4G16165	40.909	88	50	1	28	113	24	111	1.01e-19	77.8
MS.gene56596.t1	AT4G05430	38.542	96	56	2	19	112	13	107	1.29e-19	78.6
MS.gene56596.t1	AT4G05430	38.542	96	56	2	19	112	38	132	1.90e-19	78.6
MS.gene56596.t1	AT5G53610	38.614	101	62	0	10	110	8	108	9.49e-19	75.5
MS.gene56596.t1	AT5G63225	42.391	92	52	1	22	112	17	108	1.00e-18	75.5
MS.gene56596.t1	AT1G66855	34.783	115	68	2	1	113	2	111	4.08e-18	73.9
MS.gene56596.t1	AT2G05790	42.708	96	52	2	17	110	372	466	1.40e-17	77.0
MS.gene56596.t1	AT5G63240	36.667	90	53	1	27	112	37	126	2.41e-17	72.4
MS.gene56596.t1	AT4G29360	39.080	87	51	1	28	112	389	475	3.24e-17	76.3
MS.gene56596.t1	AT4G29360	39.080	87	51	1	28	112	399	485	3.41e-17	76.3
MS.gene56596.t1	AT1G11820	36.792	106	63	2	11	112	360	465	6.40e-17	75.1
MS.gene56596.t1	AT5G24318	37.079	89	55	1	25	112	367	455	7.56e-17	75.1
MS.gene56596.t1	AT4G34480	36.905	84	52	1	30	112	253	336	1.33e-16	74.3
MS.gene56596.t1	AT4G34480	36.905	84	52	1	30	112	364	447	1.62e-16	73.9
MS.gene56596.t1	AT5G24318	38.372	86	52	1	28	112	231	316	2.77e-16	72.8
MS.gene56596.t1	AT2G01630	35.000	100	61	2	17	112	345	444	2.88e-16	73.6
MS.gene56596.t1	AT4G05430	36.667	90	54	2	19	106	38	126	5.21e-16	68.9
MS.gene56596.t1	AT2G39640	37.000	100	59	2	15	110	341	440	6.30e-16	72.4
MS.gene56596.t1	AT2G39640	37.349	83	51	1	30	111	460	542	9.57e-16	72.0
MS.gene56596.t1	AT5G63230	39.535	86	51	1	28	112	24	109	7.40e-16	68.2
MS.gene56596.t1	AT5G55180	40.000	85	49	1	28	110	370	454	9.40e-16	72.0
MS.gene56596.t1	AT3G13560	38.889	90	53	1	25	112	357	446	1.01e-15	72.0
MS.gene56596.t1	AT3G13560	38.889	90	53	1	25	112	357	446	1.01e-15	72.0
MS.gene56596.t1	AT3G13560	38.889	90	53	1	25	112	357	446	1.01e-15	72.0
MS.gene56596.t1	AT3G13560	38.889	90	53	1	25	112	357	446	1.01e-15	72.0
MS.gene56596.t1	AT3G13560	38.889	90	53	1	25	112	357	446	1.01e-15	72.0
MS.gene56596.t1	AT3G58100	30.841	107	69	2	8	112	22	125	2.66e-15	68.2
MS.gene56596.t1	AT1G18650	33.628	113	65	2	1	112	1	104	4.99e-15	66.2
MS.gene56596.t1	AT1G66250	34.831	89	56	1	27	113	365	453	6.60e-15	69.7
MS.gene56596.t1	AT2G29735	36.036	111	68	2	5	112	6	116	9.41e-15	65.5
MS.gene56596.t1	AT3G58100	30.841	107	69	2	8	112	98	201	9.46e-15	68.2
MS.gene56596.t1	AT1G18650	33.628	113	65	2	1	112	1	104	1.25e-14	66.6
MS.gene56596.t1	AT3G55430	38.095	84	51	1	30	112	366	449	1.65e-14	68.6
MS.gene56596.t1	AT2G01630	35.106	94	57	2	17	106	345	438	2.89e-14	67.8
MS.gene56596.t1	AT2G30933	34.314	102	64	2	13	112	65	165	5.51e-14	65.5
MS.gene56596.t1	AT1G11820	36.000	100	60	2	11	106	360	459	1.53e-13	65.5
MS.gene56596.t1	AT1G29380	37.931	87	49	3	30	113	148	232	1.93e-13	64.7
MS.gene56596.t1	AT2G16230	34.524	84	54	1	30	112	366	449	2.04e-13	65.5
MS.gene56596.t1	AT4G26830	39.286	84	49	1	29	110	370	453	2.13e-13	65.1
MS.gene56596.t1	AT4G26830	39.286	84	49	1	29	110	366	449	2.17e-13	65.1
MS.gene56596.t1	AT5G55180	39.506	81	47	1	28	106	370	450	2.31e-13	65.1
MS.gene56596.t1	AT1G79480	36.905	84	52	1	30	112	311	394	2.37e-13	65.1
MS.gene56596.t1	AT1G79480	36.905	84	52	1	30	112	310	393	2.54e-13	65.1
MS.gene56596.t1	AT1G29380	38.372	86	48	3	30	112	148	231	2.73e-13	64.7
MS.gene56596.t1	AT5G67460	35.556	90	56	1	25	112	288	377	3.08e-13	64.7
MS.gene56596.t1	AT5G63250	36.782	87	51	1	30	112	42	128	3.82e-13	61.6
MS.gene56596.t1	AT5G35740	34.091	88	55	2	28	112	28	115	6.10e-13	60.8
MS.gene56596.t1	AT5G64790	34.483	87	55	2	27	112	366	451	6.39e-13	63.9
MS.gene56596.t1	AT4G13600	36.905	84	52	1	30	112	61	144	1.15e-12	62.0
MS.gene56596.t1	AT5G56590	35.294	85	53	1	30	112	369	453	1.23e-12	63.2
MS.gene56596.t1	AT5G24318	33.735	83	54	1	25	106	367	449	1.33e-12	62.8
MS.gene56596.t1	AT2G30933	34.375	96	60	2	13	106	65	159	2.93e-12	59.7
MS.gene56596.t1	AT2G30933	34.375	96	60	2	13	106	65	159	2.93e-12	59.7
MS.gene56596.t1	AT4G17180	38.554	83	50	1	30	112	359	440	3.84e-12	61.6
MS.gene56596.t1	AT3G24330	39.286	84	49	2	28	110	380	462	7.42e-12	60.8
MS.gene56596.t1	AT1G29380	38.750	80	44	3	30	106	148	225	9.28e-12	59.7
MS.gene56596.t1	AT1G29380	38.750	80	44	3	30	106	148	225	9.28e-12	59.7
MS.gene56596.t1	AT2G42930	35.106	94	59	2	14	106	24	116	1.21e-11	57.8
MS.gene56596.t1	AT5G67460	35.714	84	52	1	25	106	288	371	4.45e-11	58.5
MS.gene56596.t1	AT5G61130	31.765	85	57	1	29	112	20	104	9.17e-11	56.6

Find 18 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGAATATGATCATGGTTAA+TGG	0.289090	2.1:+26188936	MS.gene56596:CDS
AGATCGATAATAGAGATTCA+TGG	0.408516	2.1:-26189207	None:intergenic
GGAATATGATCATGGTTAAT+GGG	0.423180	2.1:+26188937	MS.gene56596:CDS
AATCTCTATTATCGATCTAA+AGG	0.467046	2.1:+26189212	MS.gene56596:CDS
GATCTAAAGGAACGGACCAC+TGG	0.485837	2.1:+26189225	MS.gene56596:CDS
TATGATCATGGTTAATGGGC+AGG	0.497346	2.1:+26188941	MS.gene56596:CDS
AGCGTTGCTTGATCTGATGA+AGG	0.522400	2.1:-26189080	None:intergenic
ATTTGAGAGACAAGAAAAGA+AGG	0.533155	2.1:-26188283	None:intergenic
GAGAAGAGGTAGTTTAGCCA+TGG	0.544546	2.1:-26188255	None:intergenic
GATTGCAGAATTCTTCAGAA+AGG	0.545548	2.1:+26189137	MS.gene56596:CDS
AGAGCAAGCATAATTGAGGT+TGG	0.555744	2.1:-26189108	None:intergenic
TGCAGGAGGGAATATGATCA+TGG	0.565880	2.1:+26188929	MS.gene56596:intron
ATAATAGAGATTCATGGCGA+TGG	0.571419	2.1:-26189201	None:intergenic
CGTGAGAGCAAGCATAATTG+AGG	0.578215	2.1:-26189112	None:intergenic
CTCTAAAATCGCAGTTCCAG+TGG	0.578617	2.1:-26189241	None:intergenic
GATTCATGGCGATGGAAGCG+CGG	0.609487	2.1:-26189193	None:intergenic
CTATTATCGATCTAAAGGAA+CGG	0.620629	2.1:+26189217	MS.gene56596:CDS
AACACAGAAAACTTGGTGCG+TGG	0.648923	2.1:+26189052	MS.gene56596:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTAATTATAATTTTTTTT+GGG	+	chr2.1:26188829-26188848	MS.gene56596:intron	0.0%
!!!	TAAATTTTTTTTTTAAATTT+TGG	-	chr2.1:26188515-26188534	None:intergenic	0.0%
!!	AAAAACTTTATGTAATTTAT+TGG	-	chr2.1:26188998-26189017	None:intergenic	10.0%
!!	AATTATAATTAATTGGTTAA+TGG	-	chr2.1:26188823-26188842	None:intergenic	10.0%
!!	TATTGAGATAAATTATTATA+AGG	-	chr2.1:26188717-26188736	None:intergenic	10.0%
!!	AAATTATGTTCAAATTGAAC+CGG	+	chr2.1:26188563-26188582	MS.gene56596:intron	20.0%
!!	AAGACAAACAAATTAAAAGA+AGG	-	chr2.1:26188335-26188354	None:intergenic	20.0%
!!	GATATAATATCACTAAACAT+TGG	-	chr2.1:26188772-26188791	None:intergenic	20.0%
!!	GCATAATAATACTCATTATA+AGG	-	chr2.1:26188478-26188497	None:intergenic	20.0%
!!!	GTTCAATTTGAACATAATTT+TGG	-	chr2.1:26188563-26188582	None:intergenic	20.0%
!!!	TTTTTTACTAGAATATGCTT+TGG	+	chr2.1:26188439-26188458	MS.gene56596:intron	20.0%
!	AATCTCTATTATCGATCTAA+AGG	+	chr2.1:26189212-26189231	MS.gene56596:CDS	25.0%
!	GTCATATCAAACTTGTAAAT+TGG	-	chr2.1:26189556-26189575	None:intergenic	25.0%
!	TATGAAAAACACAGAAAACT+TGG	+	chr2.1:26189045-26189064	MS.gene56596:intron	25.0%
!	TCATAATATTGATGTTCACA+TGG	+	chr2.1:26189488-26189507	MS.gene56596:intron	25.0%
!	TTAGTCATCTACAAGTAATA+TGG	+	chr2.1:26188664-26188683	MS.gene56596:intron	25.0%
!!	GCAATTACAACATTTTCTTT+TGG	-	chr2.1:26188693-26188712	None:intergenic	25.0%
!!!	ATGTAATTTGCAAAGTTTTC+AGG	+	chr2.1:26188635-26188654	MS.gene56596:intron	25.0%
!!!	CCAATCATAGTTCTAATTTT+CGG	+	chr2.1:26189385-26189404	MS.gene56596:intron	25.0%
	AAAAGAAGGAAAAAGAGAAG+AGG	-	chr2.1:26188272-26188291	None:intergenic	30.0%
	AATGAGTTATGTGACTTACT+TGG	-	chr2.1:26189293-26189312	None:intergenic	30.0%
	AGATCGATAATAGAGATTCA+TGG	-	chr2.1:26189210-26189229	None:intergenic	30.0%
	ATTTGAGAGACAAGAAAAGA+AGG	-	chr2.1:26188286-26188305	None:intergenic	30.0%
	CAAACTTGTAAATTGGTTGA+TGG	-	chr2.1:26189549-26189568	None:intergenic	30.0%
	CAACATTGTAACTGCAATTA+TGG	+	chr2.1:26189436-26189455	MS.gene56596:intron	30.0%
	CCGAAAATTAGAACTATGAT+TGG	-	chr2.1:26189388-26189407	None:intergenic	30.0%
	CTATTATCGATCTAAAGGAA+CGG	+	chr2.1:26189217-26189236	MS.gene56596:CDS	30.0%
	GGAATATGATCATGGTTAAT+GGG	+	chr2.1:26188937-26188956	MS.gene56596:CDS	30.0%
	TTGTTTAAGTGATCTGAATC+CGG	-	chr2.1:26188585-26188604	None:intergenic	30.0%
!	TTTTTCTCATTCTGAATTGC+AGG	+	chr2.1:26189596-26189615	MS.gene56596:intron	30.0%
!!!	TGGTTGATGGTTTTAAATTG+CGG	-	chr2.1:26189536-26189555	None:intergenic	30.0%
	ACAAGTAAATGAAGTCGATG+CGG	-	chr2.1:26189462-26189481	None:intergenic	35.0%
	ATAATAGAGATTCATGGCGA+TGG	-	chr2.1:26189204-26189223	None:intergenic	35.0%
	GATTGCAGAATTCTTCAGAA+AGG	+	chr2.1:26189137-26189156	MS.gene56596:CDS	35.0%
	GGGAATATGATCATGGTTAA+TGG	+	chr2.1:26188936-26188955	MS.gene56596:CDS	35.0%
	TCATTCTGAATTGCAGGTTA+TGG	+	chr2.1:26189602-26189621	MS.gene56596:intron	35.0%
!	CTTTTCTTGTCTCTCAAATC+AGG	+	chr2.1:26188287-26188306	MS.gene56596:CDS	35.0%
!!	TATGATTGGTTTCGATGTCA+AGG	-	chr2.1:26189374-26189393	None:intergenic	35.0%
	AAAATTAGACCAGACCAGTG+TGG	-	chr2.1:26188398-26188417	None:intergenic	40.0%
	AGAGCAAGCATAATTGAGGT+TGG	-	chr2.1:26189111-26189130	None:intergenic	40.0%
	GTTCACATGGTAACTACAAC+TGG	+	chr2.1:26189501-26189520	MS.gene56596:intron	40.0%
	TGTTGCATAGACCGCAATTA+TGG	-	chr2.1:26189418-26189437	None:intergenic	40.0%
	TTAATGTACTACGTCCACAC+TGG	+	chr2.1:26188381-26188400	MS.gene56596:intron	40.0%
!	TATGATCATGGTTAATGGGC+AGG	+	chr2.1:26188941-26188960	MS.gene56596:CDS	40.0%
!!	AGATTTTCAGGACTAGAGCA+GGG	-	chr2.1:26189167-26189186	None:intergenic	40.0%
	AGCGTTGCTTGATCTGATGA+AGG	-	chr2.1:26189083-26189102	None:intergenic	45.0%
	CACATGGTAACTACAACTGG+TGG	+	chr2.1:26189504-26189523	MS.gene56596:intron	45.0%
	CGTGAGAGCAAGCATAATTG+AGG	-	chr2.1:26189115-26189134	None:intergenic	45.0%
	CTCCTGCACATGTCAAAAGA+GGG	-	chr2.1:26188917-26188936	None:intergenic	45.0%
	TCGGACTGCAACCATAATTG+CGG	+	chr2.1:26189404-26189423	MS.gene56596:intron	45.0%
	TGCAGGAGGGAATATGATCA+TGG	+	chr2.1:26188929-26188948	MS.gene56596:intron	45.0%
!	CACTGGAACTGCGATTTTAG+AGG	+	chr2.1:26189242-26189261	MS.gene56596:CDS	45.0%
!	CTCTTTTGACATGTGCAGGA+GGG	+	chr2.1:26188916-26188935	MS.gene56596:intron	45.0%
!	TTCCCTCTTTTGACATGTGC+AGG	+	chr2.1:26188912-26188931	MS.gene56596:intron	45.0%
!!	AACACAGAAAACTTGGTGCG+TGG	+	chr2.1:26189052-26189071	MS.gene56596:intron	45.0%
!!	CTCTAAAATCGCAGTTCCAG+TGG	-	chr2.1:26189244-26189263	None:intergenic	45.0%
!!	GAGATTTTCAGGACTAGAGC+AGG	-	chr2.1:26189168-26189187	None:intergenic	45.0%
!!	GATTTTCAGGACTAGAGCAG+GGG	-	chr2.1:26189166-26189185	None:intergenic	45.0%
!!	CAAAAAAAATTATAATTAAT+TGG	-	chr2.1:26188830-26188849	None:intergenic	5.0%
!!!	CAATTAATTATAATTTTTTT+TGG	+	chr2.1:26188828-26188847	MS.gene56596:intron	5.0%
!!!	TAATTTTTTTTTTCTTTTTT+TGG	+	chr2.1:26188411-26188430	MS.gene56596:intron	5.0%
	CCTCCTGCACATGTCAAAAG+AGG	-	chr2.1:26188918-26188937	None:intergenic	50.0%
	GATCTAAAGGAACGGACCAC+TGG	+	chr2.1:26189225-26189244	MS.gene56596:CDS	50.0%
!	CCTCTTTTGACATGTGCAGG+AGG	+	chr2.1:26188915-26188934	MS.gene56596:intron	50.0%
!	GCGCGGTTCATGAGATTTTC+AGG	-	chr2.1:26189179-26189198	None:intergenic	50.0%
	GATTCATGGCGATGGAAGCG+CGG	-	chr2.1:26189196-26189215	None:intergenic	55.0%
	GTACTACGTCCACACTGGTC+TGG	+	chr2.1:26188386-26188405	MS.gene56596:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	26188257	26189643	26188257	ID=MS.gene56596
chr2.1	mRNA	26188257	26189643	26188257	ID=MS.gene56596.t1;Parent=MS.gene56596
chr2.1	exon	26188257	26188308	26188257	ID=MS.gene56596.t1.exon1;Parent=MS.gene56596.t1
chr2.1	CDS	26188257	26188308	26188257	ID=cds.MS.gene56596.t1;Parent=MS.gene56596.t1
chr2.1	exon	26188934	26188962	26188934	ID=MS.gene56596.t1.exon2;Parent=MS.gene56596.t1
chr2.1	CDS	26188934	26188962	26188934	ID=cds.MS.gene56596.t1;Parent=MS.gene56596.t1
chr2.1	exon	26189059	26189293	26189059	ID=MS.gene56596.t1.exon3;Parent=MS.gene56596.t1
chr2.1	CDS	26189059	26189293	26189059	ID=cds.MS.gene56596.t1;Parent=MS.gene56596.t1
chr2.1	exon	26189618	26189643	26189618	ID=MS.gene56596.t1.exon4;Parent=MS.gene56596.t1
chr2.1	CDS	26189618	26189643	26189618	ID=cds.MS.gene56596.t1;Parent=MS.gene56596.t1

Gene Sequence

>MS.gene56596

ATGGCTAAACTACCTCTTCTCTTTTTCCTTCTTTTCTTGTCTCTCAAATCAGGTATGCATGTGTCAGATTTTCTGCCTTCTTTTAATTTGTTTGTCTTAATTTGAGTTGTTGTTTGTTGAGTTTTTAATGTACTACGTCCACACTGGTCTGGTCTAATTTTTTTTTTCTTTTTTTGGTTTGATTTTTTACTAGAATATGCTTTGGCATGTATAAGCATCCTTATAATGAGTATTATTATGCAATATTTTCAGTTACCAAAATTTAAAAAAAAAATTTAGATTGTATATATCAATGAGTATATACCAAAATTATGTTCAAATTGAACCGGATTCAGATCACTTAAACAAAGTCTCGAATTCGAGTTTGTGAATAGAAAAATGTAATTTGCAAAGTTTTCAGGAAAAAATTAGTCATCTACAAGTAATATGGTTACCAAAAGAAAATGTTGTAATTGCTCCTTATAATAATTTATCTCAATAAAATAAACATGACATTTACTGTGCACATTAGTCCAATGTTTAGTGATATTATATCTACATGAGAAAAGTAAGCTAAACAATTACCATTAACCAATTAATTATAATTTTTTTTGGGTGACAAAACAACGTACAATTAATTGAATTTAATCAAGTTTACAAATTAATTTTATTTTTTTTCCCTCTTTTGACATGTGCAGGAGGGAATATGATCATGGTTAATGGGCAGGTAAATATTAATTTCTCTTGTAATTTCTAGAACCAATAAATTACATAAAGTTTTTTTTATCTAATTAAATTGTGTAATGATTTATGAAAAACACAGAAAACTTGGTGCGTGGCAAAGCCTTCATCAGATCAAGCAACGCTTTTATCCAACCTCAATTATGCTTGCTCTCACGTTGATTGCAGAATTCTTCAGAAAGGATGCCCCTGCTCTAGTCCTGAAAATCTCATGAACCGCGCTTCCATCGCCATGAATCTCTATTATCGATCTAAAGGAACGGACCACTGGAACTGCGATTTTAGAGGATCTGCTCTTATTGTTGTCACTGATCCAAGTAAGTCACATAACTCATTGTGTTGTTTCATGTTCTAGATTAAATAATTGTTCTTTTAAAATCTAAATGAAACATTGCCTTGACATCGAAACCAATCATAGTTCTAATTTTCGGACTGCAACCATAATTGCGGTCTATGCAACAACATTGTAACTGCAATTATGGCCGCATCGACTTCATTTACTTGTATTTTTTCATAATATTGATGTTCACATGGTAACTACAACTGGTGGTTGCAACCGCAATTTAAAACCATCAACCAATTTACAAGTTTGATATGACTTTCTAATGTGACATTAATCTTTTTCTCATTCTGAATTGCAGGTTATGGTAACTGCATTTATGCATAG

Protein sequence

>MS.gene56596.t1

MAKLPLLFFLLFLSLKSGGNMIMVNGQKTWCVAKPSSDQATLLSNLNYACSHVDCRILQKGCPCSSPENLMNRASIAMNLYYRSKGTDHWNCDFRGSALIVVTDPSYGNCIYA