Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56618.t1 | RHN74115.1 | 90.1 | 182 | 18 | 0 | 123 | 304 | 1 | 182 | 2.80E-66 | 262.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56618.t1 | A0A396JCE0 | 90.1 | 182 | 18 | 0 | 123 | 304 | 1 | 182 | 2.0e-66 | 262.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049262 | MS.gene56618 | 0.822796 | 1.96E-53 | -1.69E-46 |
MS.gene049853 | MS.gene56618 | 0.81431 | 1.64E-51 | -1.69E-46 |
MS.gene05404 | MS.gene56618 | 0.803738 | 3.02E-49 | -1.69E-46 |
MS.gene054174 | MS.gene56618 | 0.80094 | 1.14E-48 | -1.69E-46 |
MS.gene054175 | MS.gene56618 | 0.805923 | 1.06E-49 | -1.69E-46 |
MS.gene055017 | MS.gene56618 | 0.803907 | 2.79E-49 | -1.69E-46 |
MS.gene055056 | MS.gene56618 | 0.925087 | 2.95E-90 | -1.69E-46 |
MS.gene058515 | MS.gene56618 | 0.832082 | 1.16E-55 | -1.69E-46 |
MS.gene059276 | MS.gene56618 | 0.832458 | 9.35E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56618.t1 | MTR_6g043310 | 88.514 | 148 | 17 | 0 | 153 | 300 | 1 | 148 | 5.26e-95 | 278 |
MS.gene56618.t1 | MTR_6g088780 | 91.057 | 123 | 11 | 0 | 188 | 310 | 16 | 138 | 1.37e-78 | 236 |
MS.gene56618.t1 | MTR_5g061300 | 38.298 | 188 | 80 | 4 | 34 | 221 | 124 | 275 | 1.57e-36 | 133 |
MS.gene56618.t1 | MTR_3g055517 | 31.933 | 119 | 68 | 2 | 186 | 298 | 7 | 118 | 3.33e-15 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56618.t1 | AT1G40087 | 26.667 | 210 | 131 | 5 | 60 | 261 | 152 | 346 | 1.39e-14 | 73.9 |
MS.gene56618.t1 | AT3G30200 | 27.064 | 218 | 136 | 7 | 54 | 261 | 262 | 466 | 6.94e-13 | 69.3 |
Find 66 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGGAAATTGTTGAAATTT+TGG | 0.050436 | 2.1:+26603259 | MS.gene56618:CDS |
GTGCTTTAACCTATCCTTTA+AGG | 0.134192 | 2.1:-26603208 | None:intergenic |
ACATCATCTTGACTTAAATT+TGG | 0.147003 | 2.1:-26604068 | None:intergenic |
TCTGCCATATTCAACCTTAA+AGG | 0.196778 | 2.1:+26603194 | MS.gene56618:CDS |
CCCGGTAGAGTTCGTTGTTT+TGG | 0.258619 | 2.1:+26603870 | MS.gene56618:CDS |
TATGATACAGCATGGTAAAA+TGG | 0.266410 | 2.1:+26603040 | MS.gene56618:intron |
CGAAGAAGACGGTTTGGATA+TGG | 0.266932 | 2.1:-26602760 | None:intergenic |
CTGGAGACTGATTGGAATCT+TGG | 0.297693 | 2.1:-26603812 | None:intergenic |
CTATCCTTTAAGGTTGAATA+TGG | 0.303500 | 2.1:-26603198 | None:intergenic |
AAGTACCAGAACCTCATTTC+AGG | 0.309482 | 2.1:+26603241 | MS.gene56618:CDS |
TGAGGTTCTGGTACTTCTTC+AGG | 0.315196 | 2.1:-26603234 | None:intergenic |
TTGGATTGAATCCTGAAGTT+TGG | 0.322903 | 2.1:-26603793 | None:intergenic |
TTCCTCTTGAAGATCATCTT+CGG | 0.326083 | 2.1:-26604778 | None:intergenic |
AACACCTTTCCTTCCTTTCT+CGG | 0.347137 | 2.1:-26603112 | None:intergenic |
TTTATGTAAGGCCAAACTTC+AGG | 0.363761 | 2.1:+26603782 | MS.gene56618:intron |
TTCATAGTGTTTCTTAATGT+TGG | 0.379202 | 2.1:-26603937 | None:intergenic |
CAAGTGTTTCAGTCTTTGTT+TGG | 0.381670 | 2.1:+26603837 | MS.gene56618:CDS |
TCCTCTTGAAGATCATCTTC+GGG | 0.382074 | 2.1:-26604777 | None:intergenic |
TTCGATTTCGAAACCATCTT+CGG | 0.386719 | 2.1:+26602779 | MS.gene56618:CDS |
TCATTCTTCTTCAACATTGA+CGG | 0.388492 | 2.1:-26603906 | None:intergenic |
TTCGATAAACATTTCTGCTT+GGG | 0.400423 | 2.1:-26603627 | None:intergenic |
CGAAATCGAAGAAGACGGTT+TGG | 0.409145 | 2.1:-26602766 | None:intergenic |
TACACATTTACTTGGATAGT+AGG | 0.427575 | 2.1:-26603288 | None:intergenic |
CACTTGGTCTGGAGACTGAT+TGG | 0.430299 | 2.1:-26603820 | None:intergenic |
TTCAACAATTTCCTGAAATG+AGG | 0.433787 | 2.1:-26603252 | None:intergenic |
AAAGACTGAAACACTTGGTC+TGG | 0.435429 | 2.1:-26603831 | None:intergenic |
ACACCTTTCCTTCCTTTCTC+GGG | 0.441204 | 2.1:-26603111 | None:intergenic |
TTTCGATAAACATTTCTGCT+TGG | 0.456916 | 2.1:-26603628 | None:intergenic |
AAATTTATTATTCCCGAGAA+AGG | 0.463753 | 2.1:+26603099 | MS.gene56618:CDS |
TTTCTAGAATCAATGATGCT+TGG | 0.471897 | 2.1:+26603136 | MS.gene56618:CDS |
AACATGATGGGACATGCTTT+AGG | 0.472552 | 2.1:+26604095 | MS.gene56618:CDS |
ACCTGAAAAGCGTGCAAAGA+AGG | 0.475574 | 2.1:+26603586 | MS.gene56618:intron |
TCCAAAACAACGAACTCTAC+CGG | 0.480920 | 2.1:-26603871 | None:intergenic |
AATTTCCTGAAATGAGGTTC+TGG | 0.484383 | 2.1:-26603246 | None:intergenic |
CAGAAGTTTATACACCGAAT+GGG | 0.492426 | 2.1:+26603438 | MS.gene56618:CDS |
CATATTCAACCTTAAAGGAT+AGG | 0.494808 | 2.1:+26603199 | MS.gene56618:CDS |
AATATGTTACTGACCGAAGA+TGG | 0.496968 | 2.1:-26602792 | None:intergenic |
ATCAACCCATGTTCCTGAAA+AGG | 0.497978 | 2.1:+26604151 | MS.gene56618:CDS |
GACTAGCATGAAGGAGAGGA+TGG | 0.511088 | 2.1:+26603968 | MS.gene56618:CDS |
AGCGTGCAAAGAAGGATGAC+GGG | 0.511727 | 2.1:+26603594 | MS.gene56618:intron |
CCAAAACAACGAACTCTACC+GGG | 0.527938 | 2.1:-26603870 | None:intergenic |
TTATTATTCCCGAGAAAGGA+AGG | 0.552013 | 2.1:+26603103 | MS.gene56618:CDS |
GAAACACGTCAACCTCGAAA+AGG | 0.553170 | 2.1:+26603647 | MS.gene56618:CDS |
GCAGAAGTTTATACACCGAA+TGG | 0.554215 | 2.1:+26603437 | MS.gene56618:CDS |
AACATTAAGAAACACTATGA+AGG | 0.556057 | 2.1:+26603939 | MS.gene56618:CDS |
AAAAGTTGATGAAGAAACAG+AGG | 0.586729 | 2.1:+26603670 | MS.gene56618:CDS |
CATTTACTTGGATAGTAGGA+TGG | 0.594484 | 2.1:-26603284 | None:intergenic |
AAGCGTGCAAAGAAGGATGA+CGG | 0.594491 | 2.1:+26603593 | MS.gene56618:intron |
AGATGATGTGGAGAACATGA+TGG | 0.600705 | 2.1:+26604082 | MS.gene56618:CDS |
CAAACAAAGACTGAAACACT+TGG | 0.600985 | 2.1:-26603836 | None:intergenic |
AAATTTAAGTCAAGATGATG+TGG | 0.602230 | 2.1:+26604070 | MS.gene56618:CDS |
ACGAGTCATCGACAAAGAAG+AGG | 0.610112 | 2.1:+26603997 | MS.gene56618:CDS |
GTCATCGACAAAGAAGAGGA+TGG | 0.616323 | 2.1:+26604001 | MS.gene56618:CDS |
GGTTTCGAAATCGAAGAAGA+CGG | 0.619518 | 2.1:-26602771 | None:intergenic |
AGGTGAAATGACTAGCATGA+AGG | 0.622260 | 2.1:+26603959 | MS.gene56618:CDS |
ATTCCCGAGAAAGGAAGGAA+AGG | 0.622274 | 2.1:+26603108 | MS.gene56618:CDS |
TAAAGGATAGGTTAAAGCAC+GGG | 0.622422 | 2.1:+26603211 | MS.gene56618:CDS |
TTAAAGGATAGGTTAAAGCA+CGG | 0.629502 | 2.1:+26603210 | MS.gene56618:CDS |
TTGTTTGGTAAAGAAAAGCC+CGG | 0.632082 | 2.1:+26603852 | MS.gene56618:CDS |
AGAAGTTTATACACCGAATG+GGG | 0.636871 | 2.1:+26603439 | MS.gene56618:CDS |
AAATGACTAGCATGAAGGAG+AGG | 0.644066 | 2.1:+26603964 | MS.gene56618:CDS |
ACCCGAAGATGATCTTCAAG+AGG | 0.648792 | 2.1:+26604776 | MS.gene56618:CDS |
CATGGGTTGATGCAGACGAA+TGG | 0.653375 | 2.1:-26604139 | None:intergenic |
GATGATGTGGAGAACATGAT+GGG | 0.656752 | 2.1:+26604083 | MS.gene56618:CDS |
TGCAAAGAAGGATGACGGGG+AGG | 0.674888 | 2.1:+26603598 | MS.gene56618:CDS |
GCGTGCAAAGAAGGATGACG+GGG | 0.710711 | 2.1:+26603595 | MS.gene56618:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTGTTTAGTAAAAGAA+TGG | + | chr2.1:26604213-26604232 | MS.gene56618:intron | 15.0% |
!!! | AATTTTAGTCTCTAATATTT+TGG | + | chr2.1:26604560-26604579 | MS.gene56618:intron | 15.0% |
!!! | AGAGTTGTTTTTTTTTTTTT+AGG | - | chr2.1:26602897-26602916 | None:intergenic | 15.0% |
!!! | CATATACAATCTTTTAATAA+AGG | - | chr2.1:26604695-26604714 | None:intergenic | 15.0% |
!!! | GAGTTGTTTTTTTTTTTTTA+GGG | - | chr2.1:26602896-26602915 | None:intergenic | 15.0% |
!!! | GTTTTTTTGTTATTTATGTA+AGG | + | chr2.1:26603770-26603789 | MS.gene56618:intron | 15.0% |
!!! | TTATAGAATATTAGTGTTTT+GGG | + | chr2.1:26604249-26604268 | MS.gene56618:intron | 15.0% |
!!! | TTTATAGAATATTAGTGTTT+TGG | + | chr2.1:26604248-26604267 | MS.gene56618:intron | 15.0% |
!!! | TTTTTTTGATTTTTACAGTT+TGG | + | chr2.1:26604753-26604772 | MS.gene56618:intron | 15.0% |
!! | AAAAATTATAGCTAAAGAGT+TGG | - | chr2.1:26602941-26602960 | None:intergenic | 20.0% |
!! | AAAATGAACTGTCTTTATTA+TGG | + | chr2.1:26604502-26604521 | MS.gene56618:intron | 20.0% |
!! | AAAGAATATACACATTTACT+TGG | - | chr2.1:26603299-26603318 | None:intergenic | 20.0% |
!! | ACTATATTAAAGATTTGATC+TGG | + | chr2.1:26603324-26603343 | MS.gene56618:intron | 20.0% |
!! | GGTTAATTAACTAAATGAAT+TGG | + | chr2.1:26604328-26604347 | MS.gene56618:intron | 20.0% |
! | AAATTTAAGTCAAGATGATG+TGG | + | chr2.1:26604070-26604089 | MS.gene56618:CDS | 25.0% |
! | AAATTTATTATTCCCGAGAA+AGG | + | chr2.1:26603099-26603118 | MS.gene56618:CDS | 25.0% |
! | AACATTAAGAAACACTATGA+AGG | + | chr2.1:26603939-26603958 | MS.gene56618:CDS | 25.0% |
! | ACATCATCTTGACTTAAATT+TGG | - | chr2.1:26604071-26604090 | None:intergenic | 25.0% |
! | ATATTAAAGATTTGATCTGG+TGG | + | chr2.1:26603327-26603346 | MS.gene56618:intron | 25.0% |
! | TATTAAAGATTTGATCTGGT+GGG | + | chr2.1:26603328-26603347 | MS.gene56618:intron | 25.0% |
! | TTCATAGTGTTTCTTAATGT+TGG | - | chr2.1:26603940-26603959 | None:intergenic | 25.0% |
!! | CAGGAAATTGTTGAAATTTT+GGG | + | chr2.1:26603260-26603279 | MS.gene56618:CDS | 25.0% |
!! | CGAATCATAGCAAAATTTTT+CGG | - | chr2.1:26603465-26603484 | None:intergenic | 25.0% |
!! | CTAATATATCATACCTTTTC+AGG | - | chr2.1:26604167-26604186 | None:intergenic | 25.0% |
!! | TCAGGAAATTGTTGAAATTT+TGG | + | chr2.1:26603259-26603278 | MS.gene56618:CDS | 25.0% |
!! | TTGATGACATTCTATATAGA+AGG | + | chr2.1:26604307-26604326 | MS.gene56618:intron | 25.0% |
!!! | AAGACAGTTCATTTTAATGT+CGG | - | chr2.1:26604497-26604516 | None:intergenic | 25.0% |
!!! | GTTTTTTTTATGATACAGCA+TGG | + | chr2.1:26603032-26603051 | MS.gene56618:intron | 25.0% |
CATATTCAACCTTAAAGGAT+AGG | + | chr2.1:26603199-26603218 | MS.gene56618:CDS | 30.0% | |
CCAGAAAAATACTGTCAATA+AGG | + | chr2.1:26603410-26603429 | MS.gene56618:CDS | 30.0% | |
CTTTATTATGGTCTTTGACA+CGG | + | chr2.1:26604514-26604533 | MS.gene56618:intron | 30.0% | |
GAAGAGAGTTGTTGAAATAT+TGG | - | chr2.1:26602874-26602893 | None:intergenic | 30.0% | |
GAGTTGTTGAAATATTGGAT+TGG | - | chr2.1:26602869-26602888 | None:intergenic | 30.0% | |
TACACATTTACTTGGATAGT+AGG | - | chr2.1:26603291-26603310 | None:intergenic | 30.0% | |
TATGATACAGCATGGTAAAA+TGG | + | chr2.1:26603040-26603059 | MS.gene56618:intron | 30.0% | |
TCATTCTTCTTCAACATTGA+CGG | - | chr2.1:26603909-26603928 | None:intergenic | 30.0% | |
TGCTATGATTCGACAAAAAT+TGG | + | chr2.1:26603473-26603492 | MS.gene56618:CDS | 30.0% | |
TTAAAGGATAGGTTAAAGCA+CGG | + | chr2.1:26603210-26603229 | MS.gene56618:CDS | 30.0% | |
TTCAACAATTTCCTGAAATG+AGG | - | chr2.1:26603255-26603274 | None:intergenic | 30.0% | |
TTCGATAAACATTTCTGCTT+GGG | - | chr2.1:26603630-26603649 | None:intergenic | 30.0% | |
TTTATTATGGTCTTTGACAC+GGG | + | chr2.1:26604515-26604534 | MS.gene56618:intron | 30.0% | |
TTTCGATAAACATTTCTGCT+TGG | - | chr2.1:26603631-26603650 | None:intergenic | 30.0% | |
! | CCTTATTGACAGTATTTTTC+TGG | - | chr2.1:26603413-26603432 | None:intergenic | 30.0% |
!! | AAAAGTTGATGAAGAAACAG+AGG | + | chr2.1:26603670-26603689 | MS.gene56618:CDS | 30.0% |
!! | CTATCCTTTAAGGTTGAATA+TGG | - | chr2.1:26603201-26603220 | None:intergenic | 30.0% |
!! | TTTCTAGAATCAATGATGCT+TGG | + | chr2.1:26603136-26603155 | MS.gene56618:CDS | 30.0% |
AATACGCAGTAGATGAGTAT+TGG | + | chr2.1:26604396-26604415 | MS.gene56618:intron | 35.0% | |
AATATGTTACTGACCGAAGA+TGG | - | chr2.1:26602795-26602814 | None:intergenic | 35.0% | |
AATTTCCTGAAATGAGGTTC+TGG | - | chr2.1:26603249-26603268 | None:intergenic | 35.0% | |
AGAAGTTTATACACCGAATG+GGG | + | chr2.1:26603439-26603458 | MS.gene56618:CDS | 35.0% | |
CAAACAAAGACTGAAACACT+TGG | - | chr2.1:26603839-26603858 | None:intergenic | 35.0% | |
CAAGTGTTTCAGTCTTTGTT+TGG | + | chr2.1:26603837-26603856 | MS.gene56618:CDS | 35.0% | |
CAGAAGTTTATACACCGAAT+GGG | + | chr2.1:26603438-26603457 | MS.gene56618:CDS | 35.0% | |
CATTTACTTGGATAGTAGGA+TGG | - | chr2.1:26603287-26603306 | None:intergenic | 35.0% | |
GTGCTTTAACCTATCCTTTA+AGG | - | chr2.1:26603211-26603230 | None:intergenic | 35.0% | |
TAAAGGATAGGTTAAAGCAC+GGG | + | chr2.1:26603211-26603230 | MS.gene56618:CDS | 35.0% | |
TCTGCCATATTCAACCTTAA+AGG | + | chr2.1:26603194-26603213 | MS.gene56618:CDS | 35.0% | |
TTATTATTCCCGAGAAAGGA+AGG | + | chr2.1:26603103-26603122 | MS.gene56618:CDS | 35.0% | |
TTCCTCTTGAAGATCATCTT+CGG | - | chr2.1:26604781-26604800 | None:intergenic | 35.0% | |
TTCGATTTCGAAACCATCTT+CGG | + | chr2.1:26602779-26602798 | MS.gene56618:CDS | 35.0% | |
TTGGATTGAATCCTGAAGTT+TGG | - | chr2.1:26603796-26603815 | None:intergenic | 35.0% | |
TTGTTTCAGTTGTGTTCTTG+TGG | + | chr2.1:26604449-26604468 | MS.gene56618:intron | 35.0% | |
TTGTTTGGTAAAGAAAAGCC+CGG | + | chr2.1:26603852-26603871 | MS.gene56618:CDS | 35.0% | |
TTTATGTAAGGCCAAACTTC+AGG | + | chr2.1:26603782-26603801 | MS.gene56618:intron | 35.0% | |
! | GGACTGAGAATGTTGAATTT+TGG | + | chr2.1:26604270-26604289 | MS.gene56618:intron | 35.0% |
! | TCATCAACTTTTCCTTTTCG+AGG | - | chr2.1:26603662-26603681 | None:intergenic | 35.0% |
!! | ATCATACCTTTTCAGGAACA+TGG | - | chr2.1:26604160-26604179 | None:intergenic | 35.0% |
!! | TCATACCTTTTCAGGAACAT+GGG | - | chr2.1:26604159-26604178 | None:intergenic | 35.0% |
AAAGACTGAAACACTTGGTC+TGG | - | chr2.1:26603834-26603853 | None:intergenic | 40.0% | |
AAATGACTAGCATGAAGGAG+AGG | + | chr2.1:26603964-26603983 | MS.gene56618:CDS | 40.0% | |
AACACCTTTCCTTCCTTTCT+CGG | - | chr2.1:26603115-26603134 | None:intergenic | 40.0% | |
AAGTACCAGAACCTCATTTC+AGG | + | chr2.1:26603241-26603260 | MS.gene56618:CDS | 40.0% | |
AGATGATGTGGAGAACATGA+TGG | + | chr2.1:26604082-26604101 | MS.gene56618:CDS | 40.0% | |
AGGTGAAATGACTAGCATGA+AGG | + | chr2.1:26603959-26603978 | MS.gene56618:CDS | 40.0% | |
ATCAACCCATGTTCCTGAAA+AGG | + | chr2.1:26604151-26604170 | MS.gene56618:CDS | 40.0% | |
GATGATGTGGAGAACATGAT+GGG | + | chr2.1:26604083-26604102 | MS.gene56618:CDS | 40.0% | |
GCAGAAGTTTATACACCGAA+TGG | + | chr2.1:26603437-26603456 | MS.gene56618:CDS | 40.0% | |
GGTTTCGAAATCGAAGAAGA+CGG | - | chr2.1:26602774-26602793 | None:intergenic | 40.0% | |
TCCAAAACAACGAACTCTAC+CGG | - | chr2.1:26603874-26603893 | None:intergenic | 40.0% | |
TCCTCTTGAAGATCATCTTC+GGG | - | chr2.1:26604780-26604799 | None:intergenic | 40.0% | |
TGGCTTATCTTCTGCAATGT+AGG | - | chr2.1:26603393-26603412 | None:intergenic | 40.0% | |
! | AACATGATGGGACATGCTTT+AGG | + | chr2.1:26604095-26604114 | MS.gene56618:CDS | 40.0% |
!! | CAAAATTTTTCGGCCCCATT+CGG | - | chr2.1:26603455-26603474 | None:intergenic | 40.0% |
AAGCGTGCAAAGAAGGATGA+CGG | + | chr2.1:26603593-26603612 | MS.gene56618:intron | 45.0% | |
ACACCTTTCCTTCCTTTCTC+GGG | - | chr2.1:26603114-26603133 | None:intergenic | 45.0% | |
ACCCGAAGATGATCTTCAAG+AGG | + | chr2.1:26604776-26604795 | MS.gene56618:CDS | 45.0% | |
ACGAGTCATCGACAAAGAAG+AGG | + | chr2.1:26603997-26604016 | MS.gene56618:CDS | 45.0% | |
ATTCCCGAGAAAGGAAGGAA+AGG | + | chr2.1:26603108-26603127 | MS.gene56618:CDS | 45.0% | |
CAGTTGTGTTCTTGTGGCTT+TGG | + | chr2.1:26604455-26604474 | MS.gene56618:intron | 45.0% | |
CCAAAACAACGAACTCTACC+GGG | - | chr2.1:26603873-26603892 | None:intergenic | 45.0% | |
CGAAATCGAAGAAGACGGTT+TGG | - | chr2.1:26602769-26602788 | None:intergenic | 45.0% | |
CTGGAGACTGATTGGAATCT+TGG | - | chr2.1:26603815-26603834 | None:intergenic | 45.0% | |
GAAACACGTCAACCTCGAAA+AGG | + | chr2.1:26603647-26603666 | MS.gene56618:CDS | 45.0% | |
GTCATCGACAAAGAAGAGGA+TGG | + | chr2.1:26604001-26604020 | MS.gene56618:CDS | 45.0% | |
! | ACCTGAAAAGCGTGCAAAGA+AGG | + | chr2.1:26603586-26603605 | MS.gene56618:intron | 45.0% |
! | CGAAGAAGACGGTTTGGATA+TGG | - | chr2.1:26602763-26602782 | None:intergenic | 45.0% |
! | TCCTTCTTTGCACGCTTTTC+AGG | - | chr2.1:26603590-26603609 | None:intergenic | 45.0% |
! | TGAGGTTCTGGTACTTCTTC+AGG | - | chr2.1:26603237-26603256 | None:intergenic | 45.0% |
!! | ACGCAGTAGATGAGTATTGG+AGG | + | chr2.1:26604399-26604418 | MS.gene56618:intron | 45.0% |
!!! | TTTATTTTATATCTTATAAT+TGG | - | chr2.1:26604636-26604655 | None:intergenic | 5.0% |
AGCGTGCAAAGAAGGATGAC+GGG | + | chr2.1:26603594-26603613 | MS.gene56618:intron | 50.0% | |
CACTTGGTCTGGAGACTGAT+TGG | - | chr2.1:26603823-26603842 | None:intergenic | 50.0% | |
GACTAGCATGAAGGAGAGGA+TGG | + | chr2.1:26603968-26603987 | MS.gene56618:CDS | 50.0% | |
! | CCCGGTAGAGTTCGTTGTTT+TGG | + | chr2.1:26603870-26603889 | MS.gene56618:CDS | 50.0% |
!! | CATGGGTTGATGCAGACGAA+TGG | - | chr2.1:26604142-26604161 | None:intergenic | 50.0% |
GCGTGCAAAGAAGGATGACG+GGG | + | chr2.1:26603595-26603614 | MS.gene56618:intron | 55.0% | |
!! | TGCAAAGAAGGATGACGGGG+AGG | + | chr2.1:26603598-26603617 | MS.gene56618:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 26602730 | 26604803 | 26602730 | ID=MS.gene56618 |
chr2.1 | mRNA | 26602730 | 26604803 | 26602730 | ID=MS.gene56618.t1;Parent=MS.gene56618 |
chr2.1 | exon | 26602730 | 26602800 | 26602730 | ID=MS.gene56618.t1.exon1;Parent=MS.gene56618.t1 |
chr2.1 | CDS | 26602730 | 26602800 | 26602730 | ID=cds.MS.gene56618.t1;Parent=MS.gene56618.t1 |
chr2.1 | exon | 26603050 | 26603299 | 26603050 | ID=MS.gene56618.t1.exon2;Parent=MS.gene56618.t1 |
chr2.1 | CDS | 26603050 | 26603299 | 26603050 | ID=cds.MS.gene56618.t1;Parent=MS.gene56618.t1 |
chr2.1 | exon | 26603402 | 26603494 | 26603402 | ID=MS.gene56618.t1.exon3;Parent=MS.gene56618.t1 |
chr2.1 | CDS | 26603402 | 26603494 | 26603402 | ID=cds.MS.gene56618.t1;Parent=MS.gene56618.t1 |
chr2.1 | exon | 26603596 | 26603700 | 26603596 | ID=MS.gene56618.t1.exon4;Parent=MS.gene56618.t1 |
chr2.1 | CDS | 26603596 | 26603700 | 26603596 | ID=cds.MS.gene56618.t1;Parent=MS.gene56618.t1 |
chr2.1 | exon | 26603792 | 26604172 | 26603792 | ID=MS.gene56618.t1.exon5;Parent=MS.gene56618.t1 |
chr2.1 | CDS | 26603792 | 26604172 | 26603792 | ID=cds.MS.gene56618.t1;Parent=MS.gene56618.t1 |
chr2.1 | exon | 26604771 | 26604803 | 26604771 | ID=MS.gene56618.t1.exon6;Parent=MS.gene56618.t1 |
chr2.1 | CDS | 26604771 | 26604803 | 26604771 | ID=cds.MS.gene56618.t1;Parent=MS.gene56618.t1 |
Gene Sequence |
Protein sequence |