AlfalfaGEDB | MS.gene57103

M. sativa cultivar XinJiangDaYe / MS.gene57103

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004523 GO:0004540 GO:0005488 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0097159 GO:0140098 GO:1901363
PFAM: PF13456.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57103.t1	XP_024642404.1	48.7	199	73	5	16	193	254	444	4.80E-38	167.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57103.t1	Q9HSF6	35.7	115	70	1	92	202	84	198	4.3e-11	69.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57103.t1	A0A396HB38	48.7	199	73	5	16	193	254	444	3.5e-38	167.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene57103	0.802321	5.93E-49	-1.69E-46
MS.gene049262	MS.gene57103	0.803364	3.61E-49	-1.69E-46
MS.gene051279	MS.gene57103	0.803117	4.06E-49	-1.69E-46
MS.gene052447	MS.gene57103	0.811422	7.06E-51	-1.69E-46
MS.gene054991	MS.gene57103	0.816268	6.04E-52	-1.69E-46
MS.gene055058	MS.gene57103	0.812777	3.57E-51	-1.69E-46
MS.gene056174	MS.gene57103	0.810523	1.10E-50	-1.69E-46
MS.gene059015	MS.gene57103	0.811343	7.34E-51	-1.69E-46
MS.gene059272	MS.gene57103	0.80835	3.23E-50	-1.69E-46
MS.gene059276	MS.gene57103	0.814167	1.77E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57103.t1	AT3G01410	47.009	117	56	2	83	193	154	270	2.24e-23	95.1
MS.gene57103.t1	AT3G01410	47.009	117	56	2	83	193	154	270	2.24e-23	95.1
MS.gene57103.t1	AT1G24090	40.602	133	72	3	72	197	204	336	1.21e-18	82.8
MS.gene57103.t1	AT5G51080	37.209	129	74	3	72	193	110	238	7.90e-18	79.3
MS.gene57103.t1	AT5G51080	37.209	129	74	3	72	193	173	301	2.15e-17	79.3
MS.gene57103.t1	AT5G51080	37.209	129	74	3	72	193	173	301	2.15e-17	79.3

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Find 51 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGGAACAGTTGGAAG+TGG	0.594656	6.2:+3774389	MS.gene57103:CDS
AAACTCAGAGTCTCCTTTGA+CGG	0.469224	6.2:-3776019	None:intergenic
ACACTTAAGGAGCTTATGTC+TGG	0.479927	6.2:+3776398	MS.gene57103:CDS
AGACCAATGACACACACTTA+AGG	0.489338	6.2:+3776385	MS.gene57103:CDS
AGCTGAAATGAAGCAAGTAA+AGG	0.532653	6.2:+3774344	MS.gene57103:CDS
AGTAAAGCTCCTGCACCAGC+TGG	0.540297	6.2:-3775779	None:intergenic
ATGAGACAGGCGATCATGAA+AGG	0.548157	6.2:+3775982	MS.gene57103:CDS
ATGGATTCTGGCAAGGATTT+GGG	0.335466	6.2:+3775914	MS.gene57103:CDS
ATGTTAGTAGATACTTACAG+AGG	0.702498	6.2:+3774199	MS.gene57103:CDS
ATTGATGATTTGATTAAACT+TGG	0.465397	6.2:-3774442	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCAATTGAAAGGTAGC+AGG	-	chr6.2:3775161-3775180	None:intergenic	30.0%
AATTAGGATCCTAATGCAAT+TGG	-	chr6.2:3777060-3777079	None:intergenic	30.0%
ACACAACCAAATATACTTGT+TGG	-	chr6.2:3777350-3777369	None:intergenic	30.0%
ACATTAATAGTAGCAACCTA+AGG	+	chr6.2:3776191-3776210	MS.gene57103:intron	30.0%
ACTCGATTAGCAAAATGTTA+TGG	+	chr6.2:3774527-3774546	MS.gene57103:intron	30.0%
AGAAATGATCAATTCCTCAA+AGG	+	chr6.2:3775518-3775537	MS.gene57103:intron	30.0%
AGTAAGTGTATAGCAAACTA+AGG	-	chr6.2:3776721-3776740	None:intergenic	30.0%
ATCTAACCATTTAGGAACAA+TGG	-	chr6.2:3776257-3776276	None:intergenic	30.0%
ATGTTAGTAGATACTTACAG+AGG	+	chr6.2:3774199-3774218	MS.gene57103:CDS	30.0%
ATTCTATGCAACAGTTCATT+TGG	+	chr6.2:3775830-3775849	MS.gene57103:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	3774199	3777608	3774199	ID=MS.gene57103
chr6.2	mRNA	3774199	3777608	3774199	ID=MS.gene57103.t1;Parent=MS.gene57103
chr6.2	exon	3774199	3774220	3774199	ID=MS.gene57103.t1.exon1;Parent=MS.gene57103.t1
chr6.2	CDS	3774199	3774220	3774199	ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1
chr6.2	exon	3774292	3774512	3774292	ID=MS.gene57103.t1.exon2;Parent=MS.gene57103.t1
chr6.2	CDS	3774292	3774512	3774292	ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1
chr6.2	exon	3775749	3775823	3775749	ID=MS.gene57103.t1.exon3;Parent=MS.gene57103.t1
chr6.2	CDS	3775749	3775823	3775749	ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1
chr6.2	exon	3775910	3776053	3775910	ID=MS.gene57103.t1.exon4;Parent=MS.gene57103.t1
chr6.2	CDS	3775910	3776053	3775910	ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1
chr6.2	exon	3776369	3776476	3776369	ID=MS.gene57103.t1.exon5;Parent=MS.gene57103.t1
chr6.2	CDS	3776369	3776476	3776369	ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1
chr6.2	exon	3777558	3777608	3777558	ID=MS.gene57103.t1.exon6;Parent=MS.gene57103.t1
chr6.2	CDS	3777558	3777608	3777558	ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1

Gene Sequence

>MS.gene57103

ATGTTAGTAGATACTTACAGAGGTAAATATTTGATATTGATTTTTTTACTAATTTTTGTTTCTGTTATTCATTTCTTATGCTCATTACTACAGTTTGGTGCTTTAATCTCATAATGGAAAACAACATGGGAATTGCGGAACTTAAAGCTGAAATGAAGCAAGTAAAGGAAACAGTTGAAGAGTTGCAAGGAAACACGGAACAGTTGGAAGTGGCCATTGCATCCGAATTCGAACGGATGAATGCCAAGTTTAATCAAATCATCAATGCCTTGAAGACACTTCAATCGCAGGTTGAACCAGCTGCAAACCGAGAGGTGAGAAATGTTAAACTCGATTAGCAAAATGTTATGGATTGGATGATTTTTAATGTTTTTTGATTACTATGCAACATCTGATGTAGATAGATTAATTAACAATCGCATTGATACATTTAGATTTAGAGGTCGTTCCTCCTTAGTTCCATGTACTCGTTTCATTAACGGCCTGAGTTTAGACGAGCGCTAGAGCTTGATTTTGGACCTTCTGTGTATAAGAGAGCTTTCGATAAATGAATATAAAAAGAAGATGAATAAATTGTGTTACTTTTGTGATAAAAAATTCTCCTCTTGAATATCCCAATAGACATTTGATTTTATGATACTATAATTGGTGGATAATGGTGTTAGCTTTGATAGCTTTCTACACCCTAGAAATGCTCAATTCCTCAAAGGGAATATTAAACTAGCACCATGCTTCAAAGTTTATGCTTGGTTTTCTTCATTTTTGGAAATTTTCTATATAGTTTTAACAGTCATCAGTTTTAATAGTCATATTTAACTCTAAAATTTCATGAGATTATTCAGACAAATGTGTATCGTTAAAGCTGAGCAGATATACGGTGTCTTAGAATTAATATAGTATAAATAGAATATTTGTGATCATTCATGGTAGCTTTTCGGCAAAGCGACTTTCTATGGCTGCCTGCTACCTTTCAATTGAATTTGGCCAATGATTCTGCATTCTGCATGTGGCTATATCTAAATCTCAGTGTTGTTTGAGATTACATCTGCTCAAAGCATCACGTGATATCTTTGATTTAGGATTATGATTGTGTATGCAGTAAACATTTGTTCAAACCCCTAGCACTAAACCTTTTACCGACTAACAGAAAAACATGAATATAAAGAGTTTCCACTGCTGAAATGCAAATCAGAAGAGATAAATGGATTGTGTTATTTTTGTGATAAAAAATTTCTTCCTGAATGTCCTAATAGATATTTTATTTTATGATGCTACAATTGGTGGATAATGCTGTTAGCTTTGATAGCTTTCTACACCCTAGAAATGATCAATTCCTCAAAGGGCCTATTAAACTAGCACCATGCTTCAAAGTTTTTTTTTATGCTTGGCTTTTTTCATTTTTAGAAATTGTCTATATAGTTTATGCAGTATAGGTTCTGGGAAACTTGAATCCTCTATGAAGTTTTAATAGTCATATTTAACTCTGAAGTTTTATATCAACGTTTATTTTATCTATGAGATAATATAGTATAACAAAGTATTGTTTGCAGCTTTCTTGTACCATTGTATTTGGTGCTGAACCAGCTGGTGCAGGAGCTTTACTGCTTGCTGATGATGGGAGTCAGGTATCTATTCTATGCAACAGTTCATTTGGGGTCTTATATTATTCATTTATAATTAAAATTTAGCCAACTCTTATGTTTCTTTGCAGTACTATGGATTCTGGCAAGGATTTGGGCATCAAACAAAAGAGGGGGCGCAGTATCGGGCATTGATTTTAGGTATGAGACAGGCGATCATGAAAGGATTTAAACACGTTACCGTCAAAGGAGACTCTGAGTTTGTTGTCAATCAGGTTTGTTTTATTATAGATTACGCATTATTATTATATTTAATATATTTTTCTTTACTTCATCTTAAAATTGCATTTGAATGTTGATAAAATGAATATTACATGCTTATTTGAAAATTCCAAGTAATTAAATACTTTCTACATTAATAGTAGCAACCTAAGGAACCTACCCCCTTTATAAAAATAACAAAGGCTTCTTCAATCCATTGTTCCTAAATGGTTAGATACTGTTAAGATTGACTCATTTTTACTTTTCATTTTTGATACATTTCTCTTTCCTAAACAATTTACTGACACATGTTATTGGTTTTCCAACAGTTTGGGGAACCCTGGCAGACCAATGACACACACTTAAGGAGCTTATGTCTGGAGGCTATGAAGTTGAGGAATAGCTTTGACTCATTCTCCATCCAGCACATTCCTCGGGTAATTGCTTTGATGAGTTCAAAAACAATTACATTGGAATTTAAGAAGTATTATGTTTTTATGAATTTTTAAATGCAACCATTTACTGGTTCTATTCATGGTTGAACATTATGATAAATATAGAAACATTTCTACCAAATTCATGTAAAGATTGTTTACATTTTCTGTCACCTTCAATAGGTATCTTGTTAAGGAAATGGATGTTTGTAGAAAGTATTGCTAGATTAGGCTCATCAACATGCCTTAGTTTGCTATACACTTACTACAGTAATTCATGTTCAACATGTGACAGAAAATATAAACAATCTTTCCATAAATTTGGTAGACATGTATCTATATTTATCATAATGTTCAACCATCCTAGCTAGTTATATACTGTTCGATCTATGTACACTGTACACACAATTCCCAGTATTTGCTTGGTACAATCAACGAGCATTGGCAGTAACTTTGTTAGGATTCTTATGATAGGAATACTTGCATAAAATGATCACTAGCAGCACATCAATATGCTCCTAAGTTTCTGAATATCTTGAGTTGAAGCCCAGCATCTTAGATATATTGTTCGTTATCACTGACACCAATTGCATTAGGATCCTAATTATATGAATATTTACATTCTGTTCTGACTTTTTTTTATCTCTTCAATTTGGATTACAACATCTTATATTTTTTCCTCAACCTCTACCAATAACATTTCTTTTTCTAATGTTTAAGGGACAAAACAAAGCAGCTCGTTATTATGCAAGCCGGACCTTAAATTTCCAAGGTTATGCCTCAAGACATTTTCTCAGTTCTCTATAGGTTTCAATTCTTTGATATCCTAATAAATGAGAATTCCTATATTTTGCAACCAAAGCTGCTTTTAAACCAACAAGTATATTTGGTTGTGTTTGGTTTTCTATATCAATGGGTGTAATTTAGAAAAAAAAATTGAAAGTAATATTGTGAAAGGTTAATGGATTTGGTAGGGGCACATATTGTGAAAGAAATCTGTTAGCTTGCCTCAAAATTTATTTTCATATCCCTATTTGATACAGGATTATAAAATCTAATGGATTTTTATGTGATACTTTTGTAGATGGTGAATATGACGACGAACACATCACTTGATGATCATCCGACAACATGA

Protein sequence

>MS.gene57103.t1

MLVDTYRVWCFNLIMENNMGIAELKAEMKQVKETVEELQGNTEQLEVAIASEFERMNAKFNQIINALKTLQSQVEPAANRELSCTIVFGAEPAGAGALLLADDGSQYYGFWQGFGHQTKEGAQYRALILGMRQAIMKGFKHVTVKGDSEFVVNQFGEPWQTNDTHLRSLCLEAMKLRNSFDSFSIQHIPRMVNMTTNTSLDDHPTT