Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57103.t1 | XP_024642404.1 | 48.7 | 199 | 73 | 5 | 16 | 193 | 254 | 444 | 4.80E-38 | 167.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57103.t1 | Q9HSF6 | 35.7 | 115 | 70 | 1 | 92 | 202 | 84 | 198 | 4.3e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57103.t1 | A0A396HB38 | 48.7 | 199 | 73 | 5 | 16 | 193 | 254 | 444 | 3.5e-38 | 167.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene57103 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene049262 | MS.gene57103 | 0.803364 | 3.61E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene57103 | 0.803117 | 4.06E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene57103 | 0.811422 | 7.06E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene57103 | 0.816268 | 6.04E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene57103 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene57103 | 0.810523 | 1.10E-50 | -1.69E-46 |
| MS.gene059015 | MS.gene57103 | 0.811343 | 7.34E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene57103 | 0.80835 | 3.23E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene57103 | 0.814167 | 1.77E-51 | -1.69E-46 |
| MS.gene059459 | MS.gene57103 | 0.805314 | 1.42E-49 | -1.69E-46 |
| MS.gene059460 | MS.gene57103 | 0.804682 | 1.92E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene57103 | 0.811421 | 7.06E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57103.t1 | AT3G01410 | 47.009 | 117 | 56 | 2 | 83 | 193 | 154 | 270 | 2.24e-23 | 95.1 |
| MS.gene57103.t1 | AT3G01410 | 47.009 | 117 | 56 | 2 | 83 | 193 | 154 | 270 | 2.24e-23 | 95.1 |
| MS.gene57103.t1 | AT1G24090 | 40.602 | 133 | 72 | 3 | 72 | 197 | 204 | 336 | 1.21e-18 | 82.8 |
| MS.gene57103.t1 | AT5G51080 | 37.209 | 129 | 74 | 3 | 72 | 193 | 110 | 238 | 7.90e-18 | 79.3 |
| MS.gene57103.t1 | AT5G51080 | 37.209 | 129 | 74 | 3 | 72 | 193 | 173 | 301 | 2.15e-17 | 79.3 |
| MS.gene57103.t1 | AT5G51080 | 37.209 | 129 | 74 | 3 | 72 | 193 | 173 | 301 | 2.15e-17 | 79.3 |
Find 51 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTGTACCATTGTATT+TGG | 0.185261 | 6.2:+3775749 | MS.gene57103:CDS |
| CTTTGCAGTACTATGGATTC+TGG | 0.252287 | 6.2:+3775902 | MS.gene57103:intron |
| TATGGATTCTGGCAAGGATT+TGG | 0.278405 | 6.2:+3775913 | MS.gene57103:CDS |
| CTCTGAGTTTGTTGTCAATC+AGG | 0.282564 | 6.2:+3776032 | MS.gene57103:CDS |
| GGCATTCATCCGTTCGAATT+CGG | 0.288491 | 6.2:-3774421 | None:intergenic |
| TATGTTTCTTTGCAGTACTA+TGG | 0.304270 | 6.2:+3775895 | MS.gene57103:intron |
| ATGGATTCTGGCAAGGATTT+GGG | 0.335466 | 6.2:+3775914 | MS.gene57103:CDS |
| CTCACCTCTCGGTTTGCAGC+TGG | 0.381653 | 6.2:-3774495 | None:intergenic |
| GCTTTACTGCTTGCTGATGA+TGG | 0.411891 | 6.2:+3775794 | MS.gene57103:CDS |
| CTGCGATTGAAGTGTCTTCA+AGG | 0.419246 | 6.2:-3774466 | None:intergenic |
| GCTCCTTAAGTGTGTGTCAT+TGG | 0.429846 | 6.2:-3776388 | None:intergenic |
| TTGGTGCTTTAATCTCATAA+TGG | 0.432488 | 6.2:+3774293 | MS.gene57103:CDS |
| GTGTGTGTCATTGGTCTGCC+AGG | 0.435559 | 6.2:-3776379 | None:intergenic |
| ATTGATGATTTGATTAAACT+TGG | 0.465397 | 6.2:-3774442 | None:intergenic |
| CTTTACTGCTTGCTGATGAT+GGG | 0.465599 | 6.2:+3775795 | MS.gene57103:CDS |
| AAACTCAGAGTCTCCTTTGA+CGG | 0.469224 | 6.2:-3776019 | None:intergenic |
| GCTTGCTGATGATGGGAGTC+AGG | 0.473864 | 6.2:+3775802 | MS.gene57103:CDS |
| ACACTTAAGGAGCTTATGTC+TGG | 0.479927 | 6.2:+3776398 | MS.gene57103:CDS |
| AGACCAATGACACACACTTA+AGG | 0.489338 | 6.2:+3776385 | MS.gene57103:CDS |
| TCTCCATCCAGCACATTCCT+CGG | 0.496932 | 6.2:+3776454 | MS.gene57103:CDS |
| TTTAAACACGTTACCGTCAA+AGG | 0.509214 | 6.2:+3776006 | MS.gene57103:CDS |
| CAGTACTATGGATTCTGGCA+AGG | 0.514595 | 6.2:+3775907 | MS.gene57103:intron |
| CTCCATCCAGCACATTCCTC+GGG | 0.523432 | 6.2:+3776455 | MS.gene57103:CDS |
| CAATTACCCGAGGAATGTGC+TGG | 0.523567 | 6.2:-3776461 | None:intergenic |
| GGAAAACAACATGGGAATTG+CGG | 0.527571 | 6.2:+3774314 | MS.gene57103:CDS |
| AGCTGAAATGAAGCAAGTAA+AGG | 0.532653 | 6.2:+3774344 | MS.gene57103:CDS |
| CTTGAAGACACTTCAATCGC+AGG | 0.534902 | 6.2:+3774467 | MS.gene57103:CDS |
| AGTAAAGCTCCTGCACCAGC+TGG | 0.540297 | 6.2:-3775779 | None:intergenic |
| GTATTTGGTGCTGAACCAGC+TGG | 0.540412 | 6.2:+3775764 | MS.gene57103:CDS |
| TCCAACAGTTTGGGGAACCC+TGG | 0.542372 | 6.2:+3776361 | MS.gene57103:intron |
| ATGAGACAGGCGATCATGAA+AGG | 0.548157 | 6.2:+3775982 | MS.gene57103:CDS |
| GGTGCTGAACCAGCTGGTGC+AGG | 0.551244 | 6.2:+3775770 | MS.gene57103:CDS |
| GTCTGGAGGCTATGAAGTTG+AGG | 0.555604 | 6.2:+3776415 | MS.gene57103:CDS |
| GCAAGGAAACACGGAACAGT+TGG | 0.557922 | 6.2:+3774383 | MS.gene57103:CDS |
| TACCCGAGGAATGTGCTGGA+TGG | 0.580365 | 6.2:-3776457 | None:intergenic |
| CCGTTCGAATTCGGATGCAA+TGG | 0.583130 | 6.2:-3774412 | None:intergenic |
| AAACACGGAACAGTTGGAAG+TGG | 0.594656 | 6.2:+3774389 | MS.gene57103:CDS |
| ATTTGGGCATCAAACAAAAG+AGG | 0.600961 | 6.2:+3775930 | MS.gene57103:CDS |
| TGAAGAGTTGCAAGGAAACA+CGG | 0.603291 | 6.2:+3774374 | MS.gene57103:CDS |
| TCTCATAATGGAAAACAACA+TGG | 0.605376 | 6.2:+3774305 | MS.gene57103:CDS |
| TTTGGGCATCAAACAAAAGA+GGG | 0.614208 | 6.2:+3775931 | MS.gene57103:CDS |
| CTCATAATGGAAAACAACAT+GGG | 0.616126 | 6.2:+3774306 | MS.gene57103:CDS |
| TGTGTGTCATTGGTCTGCCA+GGG | 0.616830 | 6.2:-3776378 | None:intergenic |
| GAAACAGTTGAAGAGTTGCA+AGG | 0.630599 | 6.2:+3774366 | MS.gene57103:CDS |
| CCATTGCATCCGAATTCGAA+CGG | 0.643332 | 6.2:+3774412 | MS.gene57103:CDS |
| CTTAAGGAGCTTATGTCTGG+AGG | 0.659047 | 6.2:+3776401 | MS.gene57103:CDS |
| TGGGCATCAAACAAAAGAGG+GGG | 0.687228 | 6.2:+3775933 | MS.gene57103:CDS |
| TGGTTCAGCACCAAATACAA+TGG | 0.687523 | 6.2:-3775759 | None:intergenic |
| ATGTTAGTAGATACTTACAG+AGG | 0.702498 | 6.2:+3774199 | MS.gene57103:CDS |
| TTGGGCATCAAACAAAAGAG+GGG | 0.719635 | 6.2:+3775932 | MS.gene57103:CDS |
| TGAACCAGCTGCAAACCGAG+AGG | 0.720273 | 6.2:+3774491 | MS.gene57103:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAATATTCATATAATT+AGG | - | chr6.2:3777076-3777095 | None:intergenic | 10.0% |
| !! | CATAAAATAAAATATCTATT+AGG | - | chr6.2:3775447-3775466 | None:intergenic | 10.0% |
| !! | ATTAGAAAAAGAAATGTTAT+TGG | - | chr6.2:3777167-3777186 | None:intergenic | 15.0% |
| !!! | ATTTCTTTTTCTAATGTTTA+AGG | + | chr6.2:3777172-3777191 | MS.gene57103:intron | 15.0% |
| !!! | TGATTTTATGATACTATAAT+TGG | + | chr6.2:3774825-3774844 | MS.gene57103:intron | 15.0% |
| !!! | TTTCTTTTTCTAATGTTTAA+GGG | + | chr6.2:3777173-3777192 | MS.gene57103:intron | 15.0% |
| !!! | TTTTTTTTATCTCTTCAATT+TGG | + | chr6.2:3777107-3777126 | MS.gene57103:intron | 15.0% |
| !! | AAACAATCTTTACATGAATT+TGG | - | chr6.2:3776614-3776633 | None:intergenic | 20.0% |
| !! | AAACAATCTTTCCATAAATT+TGG | + | chr6.2:3776776-3776795 | MS.gene57103:intron | 20.0% |
| !! | ATTGAAAGTAATATTGTGAA+AGG | + | chr6.2:3777409-3777428 | MS.gene57103:intron | 20.0% |
| !! | ATTGATACATTTAGATTTAG+AGG | + | chr6.2:3774619-3774638 | MS.gene57103:intron | 20.0% |
| !! | CATAAAATCAAATGTCTATT+GGG | - | chr6.2:3774815-3774834 | None:intergenic | 20.0% |
| !! | TACAGGATTATAAAATCTAA+TGG | + | chr6.2:3777512-3777531 | MS.gene57103:intron | 20.0% |
| !! | TATAGGAATTCTCATTTATT+AGG | - | chr6.2:3777302-3777321 | None:intergenic | 20.0% |
| !! | TCATAAAATCAAATGTCTAT+TGG | - | chr6.2:3774816-3774835 | None:intergenic | 20.0% |
| !! | TTATAATCCTGTATCAAATA+GGG | - | chr6.2:3777505-3777524 | None:intergenic | 20.0% |
| !! | TTTAAACCAACAAGTATATT+TGG | + | chr6.2:3777341-3777360 | MS.gene57103:intron | 20.0% |
| !! | TTTATAATCCTGTATCAAAT+AGG | - | chr6.2:3777506-3777525 | None:intergenic | 20.0% |
| !!! | AGCCTTTGTTATTTTTATAA+AGG | - | chr6.2:3776226-3776245 | None:intergenic | 20.0% |
| !!! | ATTGATGATTTGATTAAACT+TGG | - | chr6.2:3774445-3774464 | None:intergenic | 20.0% |
| !!! | CCTTTGTTATTTTTATAAAG+GGG | - | chr6.2:3776224-3776243 | None:intergenic | 20.0% |
| !!! | CTTTGTTATTTTTATAAAGG+GGG | - | chr6.2:3776223-3776242 | None:intergenic | 20.0% |
| !!! | GCCTTTGTTATTTTTATAAA+GGG | - | chr6.2:3776225-3776244 | None:intergenic | 20.0% |
| !!! | GGATATGAAAATAAATTTTG+AGG | - | chr6.2:3777484-3777503 | None:intergenic | 20.0% |
| !!! | GTAGAAAGTATTTAATTACT+TGG | - | chr6.2:3776173-3776192 | None:intergenic | 20.0% |
| !!! | TAAAAAAAAACTTTGAAGCA+TGG | - | chr6.2:3775560-3775579 | None:intergenic | 20.0% |
| !!! | TCAAAGTTTTTTTTTATGCT+TGG | + | chr6.2:3775564-3775583 | MS.gene57103:intron | 20.0% |
| !!! | TTATTTTATGATGCTACAAT+TGG | + | chr6.2:3775457-3775476 | MS.gene57103:intron | 20.0% |
| !!! | TTTTATGATACTATAATTGG+TGG | + | chr6.2:3774828-3774847 | MS.gene57103:intron | 20.0% |
| ! | AAAAGAAATGTTATTGGTAG+AGG | - | chr6.2:3777161-3777180 | None:intergenic | 25.0% |
| ! | AAATATCTATTAGGACATTC+AGG | - | chr6.2:3775438-3775457 | None:intergenic | 25.0% |
| ! | AATTTACTGACACATGTTAT+TGG | + | chr6.2:3776335-3776354 | MS.gene57103:intron | 25.0% |
| ! | AGAATATTTGTGATCATTCA+TGG | + | chr6.2:3775103-3775122 | MS.gene57103:intron | 25.0% |
| ! | ATACATGTCTACCAAATTTA+TGG | - | chr6.2:3776790-3776809 | None:intergenic | 25.0% |
| ! | ATTAGCAAAATGTTATGGAT+TGG | + | chr6.2:3774532-3774551 | MS.gene57103:intron | 25.0% |
| ! | CCCCTTTATAAAAATAACAA+AGG | + | chr6.2:3776221-3776240 | MS.gene57103:intron | 25.0% |
| ! | CTATATAGTTTATGCAGTAT+AGG | + | chr6.2:3775610-3775629 | MS.gene57103:intron | 25.0% |
| ! | GAGTTCAAAAACAATTACAT+TGG | + | chr6.2:3776491-3776510 | MS.gene57103:intron | 25.0% |
| ! | GTAATATTGTGAAAGGTTAA+TGG | + | chr6.2:3777416-3777435 | MS.gene57103:intron | 25.0% |
| ! | TGACTATTAAAACTTCATAG+AGG | - | chr6.2:3775653-3775672 | None:intergenic | 25.0% |
| ! | TTAACAGTATCTAACCATTT+AGG | - | chr6.2:3776265-3776284 | None:intergenic | 25.0% |
| ! | TTTGTTAGGATTCTTATGAT+AGG | + | chr6.2:3776926-3776945 | MS.gene57103:intron | 25.0% |
| !! | AACAATATATCTAAGATGCT+GGG | - | chr6.2:3777023-3777042 | None:intergenic | 25.0% |
| !! | ATACTATAATTGGTGGATAA+TGG | + | chr6.2:3774835-3774854 | MS.gene57103:intron | 25.0% |
| !! | ATTCATGTTTTTCTGTTAGT+CGG | - | chr6.2:3775338-3775357 | None:intergenic | 25.0% |
| !! | TTATGTGATACTTTTGTAGA+TGG | + | chr6.2:3777539-3777558 | MS.gene57103:intron | 25.0% |
| !! | TTTTAAATGCAACCATTTAC+TGG | + | chr6.2:3776543-3776562 | MS.gene57103:intron | 25.0% |
| !!! | GTTTGGTTTTCTATATCAAT+GGG | + | chr6.2:3777368-3777387 | MS.gene57103:intron | 25.0% |
| !!! | TGTTTGGTTTTCTATATCAA+TGG | + | chr6.2:3777367-3777386 | MS.gene57103:intron | 25.0% |
| AAATTCAATTGAAAGGTAGC+AGG | - | chr6.2:3775161-3775180 | None:intergenic | 30.0% | |
| AATTAGGATCCTAATGCAAT+TGG | - | chr6.2:3777060-3777079 | None:intergenic | 30.0% | |
| ACACAACCAAATATACTTGT+TGG | - | chr6.2:3777350-3777369 | None:intergenic | 30.0% | |
| ACATTAATAGTAGCAACCTA+AGG | + | chr6.2:3776191-3776210 | MS.gene57103:intron | 30.0% | |
| ACTCGATTAGCAAAATGTTA+TGG | + | chr6.2:3774527-3774546 | MS.gene57103:intron | 30.0% | |
| AGAAATGATCAATTCCTCAA+AGG | + | chr6.2:3775518-3775537 | MS.gene57103:intron | 30.0% | |
| AGTAAGTGTATAGCAAACTA+AGG | - | chr6.2:3776721-3776740 | None:intergenic | 30.0% | |
| ATCTAACCATTTAGGAACAA+TGG | - | chr6.2:3776257-3776276 | None:intergenic | 30.0% | |
| ATGTTAGTAGATACTTACAG+AGG | + | chr6.2:3774199-3774218 | MS.gene57103:CDS | 30.0% | |
| ATTCTATGCAACAGTTCATT+TGG | + | chr6.2:3775830-3775849 | MS.gene57103:intron | 30.0% | |
| ATTGGCCAAATTCAATTGAA+AGG | - | chr6.2:3775168-3775187 | None:intergenic | 30.0% | |
| CAAGTATATTTGGTTGTGTT+TGG | + | chr6.2:3777351-3777370 | MS.gene57103:intron | 30.0% | |
| CATGTGTCAGTAAATTGTTT+AGG | - | chr6.2:3776331-3776350 | None:intergenic | 30.0% | |
| CTAGTTTAATATTCCCTTTG+AGG | - | chr6.2:3774903-3774922 | None:intergenic | 30.0% | |
| CTCAAGATATTCAGAAACTT+AGG | - | chr6.2:3776994-3777013 | None:intergenic | 30.0% | |
| CTTAACAAGATACCTATTGA+AGG | - | chr6.2:3776650-3776669 | None:intergenic | 30.0% | |
| CTTCAATAGGTATCTTGTTA+AGG | + | chr6.2:3776648-3776667 | MS.gene57103:intron | 30.0% | |
| CTTTCTTGTACCATTGTATT+TGG | + | chr6.2:3775749-3775768 | MS.gene57103:CDS | 30.0% | |
| GAAATGATCAATTCCTCAAA+GGG | + | chr6.2:3775519-3775538 | MS.gene57103:intron | 30.0% | |
| TAGGTATCTTGTTAAGGAAA+TGG | + | chr6.2:3776654-3776673 | MS.gene57103:intron | 30.0% | |
| TATGTTTCTTTGCAGTACTA+TGG | + | chr6.2:3775895-3775914 | MS.gene57103:intron | 30.0% | |
| TGAGGAATTGATCATTTCTA+GGG | - | chr6.2:3775517-3775536 | None:intergenic | 30.0% | |
| TGCAAATCAGAAGAGATAAA+TGG | + | chr6.2:3775381-3775400 | MS.gene57103:intron | 30.0% | |
| TGCTACCTTTCAATTGAATT+TGG | + | chr6.2:3775160-3775179 | MS.gene57103:intron | 30.0% | |
| TTATGCTCATTACTACAGTT+TGG | + | chr6.2:3774274-3774293 | MS.gene57103:intron | 30.0% | |
| TTCAATCCATTGTTCCTAAA+TGG | + | chr6.2:3776248-3776267 | MS.gene57103:intron | 30.0% | |
| TTCATATCCCTATTTGATAC+AGG | + | chr6.2:3777495-3777514 | MS.gene57103:intron | 30.0% | |
| TTCTATGCAACAGTTCATTT+GGG | + | chr6.2:3775831-3775850 | MS.gene57103:intron | 30.0% | |
| TTGAGGAATTGATCATTTCT+AGG | - | chr6.2:3775518-3775537 | None:intergenic | 30.0% | |
| ! | ACATTTTCTCAGTTCTCTAT+AGG | + | chr6.2:3777259-3777278 | MS.gene57103:intron | 30.0% |
| ! | CTCATAATGGAAAACAACAT+GGG | + | chr6.2:3774306-3774325 | MS.gene57103:CDS | 30.0% |
| ! | GAACAATATATCTAAGATGC+TGG | - | chr6.2:3777024-3777043 | None:intergenic | 30.0% |
| ! | TCACGTGATATCTTTGATTT+AGG | + | chr6.2:3775256-3775275 | MS.gene57103:intron | 30.0% |
| ! | TCTCATAATGGAAAACAACA+TGG | + | chr6.2:3774305-3774324 | MS.gene57103:CDS | 30.0% |
| ! | TTGGTGCTTTAATCTCATAA+TGG | + | chr6.2:3774293-3774312 | MS.gene57103:CDS | 30.0% |
| ! | TTTTATGATGCTACAATTGG+TGG | + | chr6.2:3775460-3775479 | MS.gene57103:intron | 30.0% |
| ! | TTTTTCTGTTAGTCGGTAAA+AGG | - | chr6.2:3775331-3775350 | None:intergenic | 30.0% |
| !! | AAAGGTTAATGGATTTGGTA+GGG | + | chr6.2:3777427-3777446 | MS.gene57103:intron | 30.0% |
| !! | ATTGATTTTAGGTATGAGAC+AGG | + | chr6.2:3775969-3775988 | MS.gene57103:CDS | 30.0% |
| !! | GTAGAAAGTATTGCTAGATT+AGG | + | chr6.2:3776683-3776702 | MS.gene57103:intron | 30.0% |
| !! | TGCTTGGTTTTCTTCATTTT+TGG | + | chr6.2:3774942-3774961 | MS.gene57103:intron | 30.0% |
| !! | TTGTGAAAGGTTAATGGATT+TGG | + | chr6.2:3777422-3777441 | MS.gene57103:intron | 30.0% |
| !!! | GTTATTTTTATAAAGGGGGT+AGG | - | chr6.2:3776219-3776238 | None:intergenic | 30.0% |
| !!! | TATTGGTTTTCCAACAGTTT+GGG | + | chr6.2:3776352-3776371 | MS.gene57103:intron | 30.0% |
| !!! | TTATTGGTTTTCCAACAGTT+TGG | + | chr6.2:3776351-3776370 | MS.gene57103:intron | 30.0% |
| AAAGCTCTCTTATACACAGA+AGG | - | chr6.2:3774720-3774739 | None:intergenic | 35.0% | |
| AATGTTATTGGTAGAGGTTG+AGG | - | chr6.2:3777155-3777174 | None:intergenic | 35.0% | |
| AGAAATGCTCAATTCCTCAA+AGG | + | chr6.2:3774886-3774905 | MS.gene57103:intron | 35.0% | |
| AGAACTGAGAAAATGTCTTG+AGG | - | chr6.2:3777255-3777274 | None:intergenic | 35.0% | |
| AGCTGAAATGAAGCAAGTAA+AGG | + | chr6.2:3774344-3774363 | MS.gene57103:CDS | 35.0% | |
| AGTTTATGCAGTATAGGTTC+TGG | + | chr6.2:3775616-3775635 | MS.gene57103:intron | 35.0% | |
| ATTTGGGCATCAAACAAAAG+AGG | + | chr6.2:3775930-3775949 | MS.gene57103:CDS | 35.0% | |
| CAGTATATAACTAGCTAGGA+TGG | - | chr6.2:3776835-3776854 | None:intergenic | 35.0% | |
| CATGCTTCAAAGTTTATGCT+TGG | + | chr6.2:3774926-3774945 | MS.gene57103:intron | 35.0% | |
| CCATGAATAGAACCAGTAAA+TGG | - | chr6.2:3776558-3776577 | None:intergenic | 35.0% | |
| CCATGTACTCGTTTCATTAA+CGG | + | chr6.2:3774658-3774677 | MS.gene57103:intron | 35.0% | |
| CGAACAGTATATAACTAGCT+AGG | - | chr6.2:3776839-3776858 | None:intergenic | 35.0% | |
| CTGCAAAGAAACATAAGAGT+TGG | - | chr6.2:3775890-3775909 | None:intergenic | 35.0% | |
| GAAATGCTCAATTCCTCAAA+GGG | + | chr6.2:3774887-3774906 | MS.gene57103:intron | 35.0% | |
| GATTGTACCAAGCAAATACT+GGG | - | chr6.2:3776887-3776906 | None:intergenic | 35.0% | |
| GGCATAACCTTGGAAATTTA+AGG | - | chr6.2:3777234-3777253 | None:intergenic | 35.0% | |
| GTTAAAGCTGAGCAGATATA+CGG | + | chr6.2:3775054-3775073 | MS.gene57103:intron | 35.0% | |
| GTTTAACATTTCTCACCTCT+CGG | - | chr6.2:3774509-3774528 | None:intergenic | 35.0% | |
| GTTTATGCAGTATAGGTTCT+GGG | + | chr6.2:3775617-3775636 | MS.gene57103:intron | 35.0% | |
| TCTATGCAACAGTTCATTTG+GGG | + | chr6.2:3775832-3775851 | MS.gene57103:intron | 35.0% | |
| TGAGGAATTGAGCATTTCTA+GGG | - | chr6.2:3774885-3774904 | None:intergenic | 35.0% | |
| TGATTGTACCAAGCAAATAC+TGG | - | chr6.2:3776888-3776907 | None:intergenic | 35.0% | |
| TGTCTATTGGGATATTCAAG+AGG | - | chr6.2:3774803-3774822 | None:intergenic | 35.0% | |
| TTGAGGAATTGAGCATTTCT+AGG | - | chr6.2:3774886-3774905 | None:intergenic | 35.0% | |
| TTTAAACACGTTACCGTCAA+AGG | + | chr6.2:3776006-3776025 | MS.gene57103:CDS | 35.0% | |
| TTTGGGCATCAAACAAAAGA+GGG | + | chr6.2:3775931-3775950 | MS.gene57103:CDS | 35.0% | |
| ! | AACCTTGGAAATTTAAGGTC+CGG | - | chr6.2:3777229-3777248 | None:intergenic | 35.0% |
| ! | AAGCATGGTGCTAGTTTAAT+AGG | - | chr6.2:3774913-3774932 | None:intergenic | 35.0% |
| ! | CAGCTTTGGTTGCAAAATAT+AGG | - | chr6.2:3777319-3777338 | None:intergenic | 35.0% |
| ! | CATTTTCTGTCACCTTCAAT+AGG | + | chr6.2:3776635-3776654 | MS.gene57103:intron | 35.0% |
| ! | GATCATTCATGGTAGCTTTT+CGG | + | chr6.2:3775114-3775133 | MS.gene57103:intron | 35.0% |
| !! | AAGGTTAATGGATTTGGTAG+GGG | + | chr6.2:3777428-3777447 | MS.gene57103:intron | 35.0% |
| !! | CAAGCATAAACTTTGAAGCA+TGG | - | chr6.2:3774928-3774947 | None:intergenic | 35.0% |
| !! | CCATTTACTGGTTCTATTCA+TGG | + | chr6.2:3776555-3776574 | MS.gene57103:intron | 35.0% |
| !! | GAAAGGTTAATGGATTTGGT+AGG | + | chr6.2:3777426-3777445 | MS.gene57103:intron | 35.0% |
| !! | TGTTGGTTTAAAAGCAGCTT+TGG | - | chr6.2:3777333-3777352 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTCCAACAGTTTG+GGG | + | chr6.2:3776353-3776372 | MS.gene57103:intron | 35.0% |
| AAACTCAGAGTCTCCTTTGA+CGG | - | chr6.2:3776022-3776041 | None:intergenic | 40.0% | |
| AATGTCTTGAGGCATAACCT+TGG | - | chr6.2:3777244-3777263 | None:intergenic | 40.0% | |
| ACACTTAAGGAGCTTATGTC+TGG | + | chr6.2:3776398-3776417 | MS.gene57103:CDS | 40.0% | |
| AGACCAATGACACACACTTA+AGG | + | chr6.2:3776385-3776404 | MS.gene57103:CDS | 40.0% | |
| ATGATTCTGCATTCTGCATG+TGG | + | chr6.2:3775186-3775205 | MS.gene57103:intron | 40.0% | |
| ATGGATTCTGGCAAGGATTT+GGG | + | chr6.2:3775914-3775933 | MS.gene57103:CDS | 40.0% | |
| CACAATTCCCAGTATTTGCT+TGG | + | chr6.2:3776877-3776896 | MS.gene57103:intron | 40.0% | |
| CATGCAGAATGCAGAATCAT+TGG | - | chr6.2:3775186-3775205 | None:intergenic | 40.0% | |
| CCGTTAATGAAACGAGTACA+TGG | - | chr6.2:3774661-3774680 | None:intergenic | 40.0% | |
| CGGTAAAAGGTTTAGTGCTA+GGG | - | chr6.2:3775318-3775337 | None:intergenic | 40.0% | |
| CTAGTTTAATAGGCCCTTTG+AGG | - | chr6.2:3775535-3775554 | None:intergenic | 40.0% | |
| CTTTGCAGTACTATGGATTC+TGG | + | chr6.2:3775902-3775921 | MS.gene57103:intron | 40.0% | |
| GAAACAGTTGAAGAGTTGCA+AGG | + | chr6.2:3774366-3774385 | MS.gene57103:CDS | 40.0% | |
| GAAACGAGTACATGGAACTA+AGG | - | chr6.2:3774653-3774672 | None:intergenic | 40.0% | |
| GGAAAACAACATGGGAATTG+CGG | + | chr6.2:3774314-3774333 | MS.gene57103:CDS | 40.0% | |
| GGTAAAAGGTTTAGTGCTAG+GGG | - | chr6.2:3775317-3775336 | None:intergenic | 40.0% | |
| TATGGATTCTGGCAAGGATT+TGG | + | chr6.2:3775913-3775932 | MS.gene57103:CDS | 40.0% | |
| TCACTGACACCAATTGCATT+AGG | + | chr6.2:3777048-3777067 | MS.gene57103:intron | 40.0% | |
| TCGGTAAAAGGTTTAGTGCT+AGG | - | chr6.2:3775319-3775338 | None:intergenic | 40.0% | |
| TGAAGAGTTGCAAGGAAACA+CGG | + | chr6.2:3774374-3774393 | MS.gene57103:CDS | 40.0% | |
| TGGTTCAGCACCAAATACAA+TGG | - | chr6.2:3775762-3775781 | None:intergenic | 40.0% | |
| TTGGGCATCAAACAAAAGAG+GGG | + | chr6.2:3775932-3775951 | MS.gene57103:CDS | 40.0% | |
| TTGGTACAATCAACGAGCAT+TGG | + | chr6.2:3776896-3776915 | MS.gene57103:intron | 40.0% | |
| ! | CTTTACTGCTTGCTGATGAT+GGG | + | chr6.2:3775795-3775814 | MS.gene57103:CDS | 40.0% |
| ! | GCATTGGCAGTAACTTTGTT+AGG | + | chr6.2:3776912-3776931 | MS.gene57103:intron | 40.0% |
| ! | TCTGATTTGCATTTCAGCAG+TGG | - | chr6.2:3775372-3775391 | None:intergenic | 40.0% |
| !! | CTCTGAGTTTGTTGTCAATC+AGG | + | chr6.2:3776032-3776051 | MS.gene57103:CDS | 40.0% |
| !!! | CAGTATCGGGCATTGATTTT+AGG | + | chr6.2:3775958-3775977 | MS.gene57103:CDS | 40.0% |
| AAACACGGAACAGTTGGAAG+TGG | + | chr6.2:3774389-3774408 | MS.gene57103:CDS | 45.0% | |
| ACGAGTACATGGAACTAAGG+AGG | - | chr6.2:3774650-3774669 | None:intergenic | 45.0% | |
| AGCCGGACCTTAAATTTCCA+AGG | + | chr6.2:3777224-3777243 | MS.gene57103:intron | 45.0% | |
| ATAAAGGGGGTAGGTTCCTT+AGG | - | chr6.2:3776210-3776229 | None:intergenic | 45.0% | |
| ATGAGACAGGCGATCATGAA+AGG | + | chr6.2:3775982-3776001 | MS.gene57103:CDS | 45.0% | |
| CAGCTCGTTATTATGCAAGC+CGG | + | chr6.2:3777207-3777226 | MS.gene57103:intron | 45.0% | |
| CAGTACTATGGATTCTGGCA+AGG | + | chr6.2:3775907-3775926 | MS.gene57103:intron | 45.0% | |
| CCATTGCATCCGAATTCGAA+CGG | + | chr6.2:3774412-3774431 | MS.gene57103:CDS | 45.0% | |
| CTCATCAAAGCAATTACCCG+AGG | - | chr6.2:3776474-3776493 | None:intergenic | 45.0% | |
| CTTAAGGAGCTTATGTCTGG+AGG | + | chr6.2:3776401-3776420 | MS.gene57103:CDS | 45.0% | |
| CTTGAAGACACTTCAATCGC+AGG | + | chr6.2:3774467-3774486 | MS.gene57103:CDS | 45.0% | |
| GCTCCTTAAGTGTGTGTCAT+TGG | - | chr6.2:3776391-3776410 | None:intergenic | 45.0% | |
| GGCATTCATCCGTTCGAATT+CGG | - | chr6.2:3774424-3774443 | None:intergenic | 45.0% | |
| TGGGCATCAAACAAAAGAGG+GGG | + | chr6.2:3775933-3775952 | MS.gene57103:CDS | 45.0% | |
| TTCGGCAAAGCGACTTTCTA+TGG | + | chr6.2:3775132-3775151 | MS.gene57103:intron | 45.0% | |
| ! | CTGCGATTGAAGTGTCTTCA+AGG | - | chr6.2:3774469-3774488 | None:intergenic | 45.0% |
| ! | GCTTTACTGCTTGCTGATGA+TGG | + | chr6.2:3775794-3775813 | MS.gene57103:CDS | 45.0% |
| CAATTACCCGAGGAATGTGC+TGG | - | chr6.2:3776464-3776483 | None:intergenic | 50.0% | |
| CCGTTCGAATTCGGATGCAA+TGG | - | chr6.2:3774415-3774434 | None:intergenic | 50.0% | |
| GCAAGGAAACACGGAACAGT+TGG | + | chr6.2:3774383-3774402 | MS.gene57103:CDS | 50.0% | |
| GTCTGGAGGCTATGAAGTTG+AGG | + | chr6.2:3776415-3776434 | MS.gene57103:CDS | 50.0% | |
| TCTAGCGCTCGTCTAAACTC+AGG | - | chr6.2:3774684-3774703 | None:intergenic | 50.0% | |
| TCTCCATCCAGCACATTCCT+CGG | + | chr6.2:3776454-3776473 | MS.gene57103:CDS | 50.0% | |
| ! | CGAGCGCTAGAGCTTGATTT+TGG | + | chr6.2:3774693-3774712 | MS.gene57103:intron | 50.0% |
| ! | TGTGTGTCATTGGTCTGCCA+GGG | - | chr6.2:3776381-3776400 | None:intergenic | 50.0% |
| !! | GTATTTGGTGCTGAACCAGC+TGG | + | chr6.2:3775764-3775783 | MS.gene57103:CDS | 50.0% |
| AGTAAAGCTCCTGCACCAGC+TGG | - | chr6.2:3775782-3775801 | None:intergenic | 55.0% | |
| CTCCATCCAGCACATTCCTC+GGG | + | chr6.2:3776455-3776474 | MS.gene57103:CDS | 55.0% | |
| TACCCGAGGAATGTGCTGGA+TGG | - | chr6.2:3776460-3776479 | None:intergenic | 55.0% | |
| TCCAACAGTTTGGGGAACCC+TGG | + | chr6.2:3776361-3776380 | MS.gene57103:intron | 55.0% | |
| TGAACCAGCTGCAAACCGAG+AGG | + | chr6.2:3774491-3774510 | MS.gene57103:CDS | 55.0% | |
| ! | AAAAGAGGGGGCGCAGTATC+GGG | + | chr6.2:3775945-3775964 | MS.gene57103:CDS | 55.0% |
| ! | CAAAAGAGGGGGCGCAGTAT+CGG | + | chr6.2:3775944-3775963 | MS.gene57103:CDS | 55.0% |
| ! | GTGTGTGTCATTGGTCTGCC+AGG | - | chr6.2:3776382-3776401 | None:intergenic | 55.0% |
| !! | GCTTGCTGATGATGGGAGTC+AGG | + | chr6.2:3775802-3775821 | MS.gene57103:CDS | 55.0% |
| GCCAGGGTTCCCCAAACTGT+TGG | - | chr6.2:3776365-3776384 | None:intergenic | 60.0% | |
| ! | CTCACCTCTCGGTTTGCAGC+TGG | - | chr6.2:3774498-3774517 | None:intergenic | 60.0% |
| ! | GGTGCTGAACCAGCTGGTGC+AGG | + | chr6.2:3775770-3775789 | MS.gene57103:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 3774199 | 3777608 | 3774199 | ID=MS.gene57103 |
| chr6.2 | mRNA | 3774199 | 3777608 | 3774199 | ID=MS.gene57103.t1;Parent=MS.gene57103 |
| chr6.2 | exon | 3774199 | 3774220 | 3774199 | ID=MS.gene57103.t1.exon1;Parent=MS.gene57103.t1 |
| chr6.2 | CDS | 3774199 | 3774220 | 3774199 | ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1 |
| chr6.2 | exon | 3774292 | 3774512 | 3774292 | ID=MS.gene57103.t1.exon2;Parent=MS.gene57103.t1 |
| chr6.2 | CDS | 3774292 | 3774512 | 3774292 | ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1 |
| chr6.2 | exon | 3775749 | 3775823 | 3775749 | ID=MS.gene57103.t1.exon3;Parent=MS.gene57103.t1 |
| chr6.2 | CDS | 3775749 | 3775823 | 3775749 | ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1 |
| chr6.2 | exon | 3775910 | 3776053 | 3775910 | ID=MS.gene57103.t1.exon4;Parent=MS.gene57103.t1 |
| chr6.2 | CDS | 3775910 | 3776053 | 3775910 | ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1 |
| chr6.2 | exon | 3776369 | 3776476 | 3776369 | ID=MS.gene57103.t1.exon5;Parent=MS.gene57103.t1 |
| chr6.2 | CDS | 3776369 | 3776476 | 3776369 | ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1 |
| chr6.2 | exon | 3777558 | 3777608 | 3777558 | ID=MS.gene57103.t1.exon6;Parent=MS.gene57103.t1 |
| chr6.2 | CDS | 3777558 | 3777608 | 3777558 | ID=cds.MS.gene57103.t1;Parent=MS.gene57103.t1 |
| Gene Sequence |
| Protein sequence |
