Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58054.t1 | XP_003609386.1 | 98.4 | 557 | 9 | 0 | 1 | 557 | 1 | 557 | 1.3e-308 | 1068.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58054.t1 | Q8TC07 | 34.7 | 452 | 245 | 7 | 109 | 557 | 133 | 537 | 2.7e-68 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58054.t1 | G7JE75 | 98.4 | 557 | 9 | 0 | 1 | 557 | 1 | 557 | 9.6e-309 | 1068.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene58054 | 0.825376 | 4.85E-54 | -1.69E-46 |
| MS.gene050359 | MS.gene58054 | 0.815366 | 9.59E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene58054 | 0.802332 | 5.90E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene58054 | 0.836711 | 7.97E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene58054 | 0.830124 | 3.50E-55 | -1.69E-46 |
| MS.gene051043 | MS.gene58054 | 0.824665 | 7.14E-54 | -1.69E-46 |
| MS.gene051209 | MS.gene58054 | 0.814087 | 1.84E-51 | -1.69E-46 |
| MS.gene052776 | MS.gene58054 | 0.803416 | 3.52E-49 | -1.69E-46 |
| MS.gene053486 | MS.gene58054 | 0.839528 | 1.50E-57 | -1.69E-46 |
| MS.gene053620 | MS.gene58054 | 0.810394 | 1.18E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene58054 | 0.806983 | 6.31E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene58054 | 0.813219 | 2.86E-51 | -1.69E-46 |
| MS.gene056097 | MS.gene58054 | 0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene05615 | MS.gene58054 | 0.816653 | 4.95E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene58054 | 0.824179 | 9.29E-54 | -1.69E-46 |
| MS.gene057174 | MS.gene58054 | 0.85057 | 1.56E-60 | -1.69E-46 |
| MS.gene058097 | MS.gene58054 | 0.811472 | 6.88E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene58054 | 0.85424 | 1.40E-61 | -1.69E-46 |
| MS.gene060933 | MS.gene58054 | 0.804442 | 2.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58054.t1 | MTR_4g115090 | 99.102 | 557 | 5 | 0 | 1 | 557 | 1 | 557 | 0.0 | 1142 |
| MS.gene58054.t1 | MTR_1g069705 | 31.395 | 258 | 143 | 5 | 331 | 557 | 40 | 294 | 2.16e-33 | 132 |
| MS.gene58054.t1 | MTR_4g081110 | 41.085 | 129 | 72 | 2 | 431 | 557 | 181 | 307 | 7.56e-25 | 107 |
| MS.gene58054.t1 | MTR_2g083220 | 41.085 | 129 | 72 | 2 | 431 | 557 | 185 | 311 | 1.58e-24 | 107 |
| MS.gene58054.t1 | MTR_2g099185 | 34.637 | 179 | 111 | 3 | 383 | 557 | 324 | 500 | 2.10e-21 | 98.2 |
| MS.gene58054.t1 | MTR_2g099185 | 34.637 | 179 | 111 | 3 | 383 | 557 | 319 | 495 | 2.86e-21 | 97.8 |
| MS.gene58054.t1 | MTR_2g099185 | 34.637 | 179 | 111 | 3 | 383 | 557 | 319 | 495 | 7.67e-21 | 97.1 |
| MS.gene58054.t1 | MTR_3g092100 | 40.404 | 99 | 59 | 0 | 459 | 557 | 345 | 443 | 1.16e-20 | 95.9 |
| MS.gene58054.t1 | MTR_1g007590 | 38.384 | 99 | 61 | 0 | 459 | 557 | 295 | 393 | 2.27e-20 | 94.7 |
| MS.gene58054.t1 | MTR_1g007590 | 38.384 | 99 | 61 | 0 | 459 | 557 | 390 | 488 | 2.41e-20 | 95.1 |
| MS.gene58054.t1 | MTR_3g083840 | 25.660 | 265 | 134 | 8 | 351 | 554 | 91 | 353 | 1.04e-13 | 73.6 |
| MS.gene58054.t1 | MTR_4g068180 | 25.551 | 227 | 135 | 7 | 350 | 551 | 143 | 360 | 5.42e-12 | 68.6 |
| MS.gene58054.t1 | MTR_2g099380 | 25.439 | 228 | 134 | 8 | 350 | 551 | 136 | 353 | 8.03e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58054.t1 | AT5G52580 | 67.368 | 570 | 166 | 9 | 1 | 557 | 3 | 565 | 0.0 | 734 |
| MS.gene58054.t1 | AT5G52580 | 66.667 | 576 | 166 | 10 | 1 | 557 | 3 | 571 | 0.0 | 728 |
| MS.gene58054.t1 | AT5G52580 | 65.417 | 587 | 166 | 10 | 1 | 557 | 3 | 582 | 0.0 | 724 |
| MS.gene58054.t1 | AT4G28550 | 32.171 | 258 | 135 | 5 | 337 | 557 | 42 | 296 | 1.25e-33 | 131 |
| MS.gene58054.t1 | AT4G28550 | 32.171 | 258 | 135 | 5 | 337 | 557 | 42 | 296 | 3.61e-33 | 131 |
| MS.gene58054.t1 | AT4G28550 | 32.171 | 258 | 135 | 5 | 337 | 557 | 42 | 296 | 6.27e-33 | 129 |
| MS.gene58054.t1 | AT2G20440 | 30.233 | 258 | 140 | 5 | 337 | 557 | 42 | 296 | 6.97e-32 | 128 |
| MS.gene58054.t1 | AT2G20440 | 30.233 | 258 | 140 | 5 | 337 | 557 | 42 | 296 | 6.97e-32 | 128 |
| MS.gene58054.t1 | AT2G20440 | 30.233 | 258 | 140 | 5 | 337 | 557 | 42 | 296 | 1.61e-31 | 125 |
| MS.gene58054.t1 | AT5G54780 | 32.609 | 276 | 132 | 8 | 331 | 557 | 30 | 300 | 1.49e-29 | 121 |
| MS.gene58054.t1 | AT4G27100 | 32.491 | 277 | 133 | 8 | 331 | 557 | 30 | 302 | 2.73e-29 | 120 |
| MS.gene58054.t1 | AT4G27100 | 32.491 | 277 | 133 | 8 | 331 | 557 | 30 | 302 | 3.78e-29 | 120 |
| MS.gene58054.t1 | AT2G20440 | 35.897 | 156 | 95 | 3 | 405 | 557 | 27 | 180 | 3.31e-25 | 106 |
| MS.gene58054.t1 | AT3G49350 | 42.424 | 99 | 57 | 0 | 459 | 557 | 335 | 433 | 9.22e-22 | 99.4 |
| MS.gene58054.t1 | AT3G59570 | 39.844 | 128 | 74 | 2 | 431 | 557 | 366 | 491 | 1.74e-21 | 99.4 |
| MS.gene58054.t1 | AT3G59570 | 39.844 | 128 | 74 | 2 | 431 | 557 | 366 | 491 | 1.89e-21 | 99.0 |
| MS.gene58054.t1 | AT3G59570 | 39.844 | 128 | 74 | 2 | 431 | 557 | 366 | 491 | 2.13e-21 | 99.0 |
| MS.gene58054.t1 | AT5G24390 | 42.424 | 99 | 57 | 0 | 459 | 557 | 322 | 420 | 3.76e-21 | 97.4 |
| MS.gene58054.t1 | AT5G41940 | 41.176 | 102 | 60 | 0 | 456 | 557 | 347 | 448 | 9.85e-21 | 96.3 |
| MS.gene58054.t1 | AT5G53570 | 42.424 | 99 | 57 | 0 | 459 | 557 | 343 | 441 | 1.80e-20 | 95.5 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 333 | 487 | 2.05e-20 | 95.9 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 333 | 487 | 2.11e-20 | 95.9 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 333 | 487 | 2.11e-20 | 95.9 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 333 | 487 | 2.11e-20 | 95.9 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 333 | 487 | 2.11e-20 | 95.9 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 329 | 483 | 2.28e-20 | 95.9 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 329 | 483 | 2.28e-20 | 95.9 |
| MS.gene58054.t1 | AT2G43490 | 33.121 | 157 | 102 | 2 | 402 | 557 | 333 | 487 | 2.66e-20 | 95.5 |
| MS.gene58054.t1 | AT5G53570 | 42.424 | 99 | 57 | 0 | 459 | 557 | 370 | 468 | 2.80e-20 | 95.1 |
| MS.gene58054.t1 | AT2G30710 | 26.642 | 274 | 163 | 9 | 303 | 551 | 85 | 345 | 2.37e-14 | 75.9 |
| MS.gene58054.t1 | AT1G04830 | 24.151 | 265 | 138 | 9 | 351 | 554 | 106 | 368 | 9.75e-12 | 67.8 |
| MS.gene58054.t1 | AT1G04830 | 24.151 | 265 | 138 | 9 | 351 | 554 | 106 | 368 | 1.23e-11 | 67.4 |
Find 137 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGGGACTTCCTTGTTTA+TGG | 0.149479 | 8.3:+12048483 | MS.gene58054:CDS |
| AACCTGCCACTGGTTCTTTA+TGG | 0.166577 | 8.3:-12055692 | None:intergenic |
| GTAGGTCTGGGGTTTGCTTT+TGG | 0.187245 | 8.3:+12055597 | MS.gene58054:intron |
| GGACCTCTCTATTCAGGTTT+TGG | 0.244998 | 8.3:+12053332 | MS.gene58054:CDS |
| GAACACTTACACTTCCATTA+TGG | 0.267903 | 8.3:-12053263 | None:intergenic |
| AAAATCAGACTAATGGATTC+AGG | 0.269981 | 8.3:+12053412 | MS.gene58054:CDS |
| CCAACTCAGTTTGCTATTAG+TGG | 0.288769 | 8.3:+12048442 | MS.gene58054:CDS |
| AGGATGAATCAGAGGCATTT+TGG | 0.291501 | 8.3:+12057144 | MS.gene58054:CDS |
| CCGAAGTCTTCCACTGTTGC+AGG | 0.294859 | 8.3:+12053507 | MS.gene58054:CDS |
| CTAAACGATTCACAAAATTC+AGG | 0.295954 | 8.3:+12055960 | MS.gene58054:CDS |
| CCAGAAAACTTTGTCTTCCT+TGG | 0.305068 | 8.3:+12053143 | MS.gene58054:intron |
| GTTGAGAGTGCATGCCATTT+TGG | 0.309389 | 8.3:-12057214 | None:intergenic |
| TACTCGGGACCTCTCTATTC+AGG | 0.318831 | 8.3:+12053326 | MS.gene58054:CDS |
| ACAGAAACCTTTACACCATT+AGG | 0.321041 | 8.3:+12048732 | MS.gene58054:CDS |
| CACCACTGTCATTCCTCTCT+TGG | 0.325902 | 8.3:-12053239 | None:intergenic |
| CTGACTTCTTTACCGACTTC+AGG | 0.337387 | 8.3:-12055660 | None:intergenic |
| TCCCGCAGAACGTTGACATT+TGG | 0.342591 | 8.3:-12056147 | None:intergenic |
| AAACCGCGGCAATCTCCTTT+AGG | 0.342609 | 8.3:+12054666 | MS.gene58054:CDS |
| TCCTCCATCACAAACAATAT+TGG | 0.344910 | 8.3:-12057125 | None:intergenic |
| CTTTATGTCTTGGTCTCCTA+TGG | 0.349395 | 8.3:-12053293 | None:intergenic |
| CATTAGGGCGGTGCCGTTTA+CGG | 0.353169 | 8.3:+12048748 | MS.gene58054:CDS |
| CAGAAACCTTTACACCATTA+GGG | 0.356617 | 8.3:+12048733 | MS.gene58054:CDS |
| GATCAAGGTTAGTCTCTATA+CGG | 0.368494 | 8.3:-12053452 | None:intergenic |
| AAAGGGCATAACGCGGATAA+TGG | 0.370518 | 8.3:+12048605 | MS.gene58054:CDS |
| TCATTCTACAACTTCGATCT+TGG | 0.375392 | 8.3:+12056186 | MS.gene58054:CDS |
| CGTAAACGGCACCGCCCTAA+TGG | 0.383654 | 8.3:-12048747 | None:intergenic |
| TCGGAGGATCAAGGTTAGTC+TGG | 0.383989 | 8.3:-12053488 | None:intergenic |
| GATAATGGTTTGTCTGATAA+AGG | 0.386252 | 8.3:+12048620 | MS.gene58054:CDS |
| ATCTGCTTTCTCAGATTCTC+AGG | 0.389099 | 8.3:+12053548 | MS.gene58054:CDS |
| GCGGACTTGACCACGAATTA+CGG | 0.389201 | 8.3:+12055462 | MS.gene58054:CDS |
| TTCAGAGAAAATCAGACTAA+TGG | 0.389365 | 8.3:+12053405 | MS.gene58054:CDS |
| GTTGCAGTTGGTGGAGCTAT+TGG | 0.391128 | 8.3:+12058890 | MS.gene58054:intron |
| ATCATTGTTGTTCTATCGTC+AGG | 0.398946 | 8.3:+12048818 | MS.gene58054:CDS |
| AAGCTCATCTTCTAATGAAC+TGG | 0.399668 | 8.3:+12048375 | MS.gene58054:CDS |
| CATTAGAAGATGAGCTTTGT+TGG | 0.405449 | 8.3:-12048369 | None:intergenic |
| ATGAATTGCAACATTATCCT+TGG | 0.422003 | 8.3:-12048419 | None:intergenic |
| ACAAAATTCAGGGAAAGAAA+AGG | 0.423410 | 8.3:+12055971 | MS.gene58054:CDS |
| GTCTCCAATATTGTTTGTGA+TGG | 0.428173 | 8.3:+12057121 | MS.gene58054:CDS |
| AATGACAGTGGTGTCCATAA+TGG | 0.428525 | 8.3:+12053249 | MS.gene58054:CDS |
| TGTCTTCCTTGGAACTGCCC+AGG | 0.434407 | 8.3:+12053154 | MS.gene58054:CDS |
| GTCTTCCTTGGAACTGCCCA+GGG | 0.435537 | 8.3:+12053155 | MS.gene58054:CDS |
| TGTAGAATGAATATGTCAAC+AGG | 0.444122 | 8.3:-12056173 | None:intergenic |
| TCCGCGTTATGCCCTTTGTA+AGG | 0.444284 | 8.3:-12048599 | None:intergenic |
| CCTCCGCTATATTTCTATAG+TGG | 0.446004 | 8.3:+12051828 | MS.gene58054:CDS |
| CAAAATTCAGGGAAAGAAAA+GGG | 0.447159 | 8.3:+12055972 | MS.gene58054:CDS |
| GGATCGTTAACTTTATGTCT+TGG | 0.448813 | 8.3:-12053303 | None:intergenic |
| AGGAGGCATACTCCTGCTCT+TGG | 0.450918 | 8.3:+12048785 | MS.gene58054:CDS |
| TATACGGGTTCTCCTCTCAT+TGG | 0.452372 | 8.3:-12053436 | None:intergenic |
| CTTCGATCTTGGTTATTGTC+AGG | 0.459717 | 8.3:+12056197 | MS.gene58054:CDS |
| GTCTCTCTGATGGAACGTCT+TGG | 0.461320 | 8.3:+12057173 | MS.gene58054:CDS |
| ATTGACCTGACATCCGTAAA+CGG | 0.471464 | 8.3:-12048761 | None:intergenic |
| TCCAAATGTCAACGTTCTGC+GGG | 0.479036 | 8.3:+12056146 | MS.gene58054:CDS |
| AGGTTAGTCTGGGAAGACTT+TGG | 0.494059 | 8.3:-12053477 | None:intergenic |
| TCCAATATTGTTTGTGATGG+AGG | 0.497976 | 8.3:+12057124 | MS.gene58054:CDS |
| GGGAAGACTTTGGAGGATCA+AGG | 0.498455 | 8.3:-12053467 | None:intergenic |
| TTACGGATGTCAGGTCAATC+AGG | 0.498746 | 8.3:+12048765 | MS.gene58054:CDS |
| GTAGAGTATCTCCTCGGCTC+AGG | 0.505620 | 8.3:+12055937 | MS.gene58054:intron |
| GAGTTGTGAAGTTGTTTCAC+GGG | 0.507249 | 8.3:-12053382 | None:intergenic |
| AAATCAGACTAATGGATTCA+GGG | 0.512843 | 8.3:+12053413 | MS.gene58054:CDS |
| TGACAATTTGTCGCTAGTGT+GGG | 0.517788 | 8.3:+12054641 | MS.gene58054:CDS |
| TGACCACGAATTACGGAATG+AGG | 0.518735 | 8.3:+12055469 | MS.gene58054:CDS |
| CATACCTCTTTAGAACCTAA+AGG | 0.519668 | 8.3:-12054681 | None:intergenic |
| TAAACGATTCACAAAATTCA+GGG | 0.520860 | 8.3:+12055961 | MS.gene58054:CDS |
| CCACTAATAGCAAACTGAGT+TGG | 0.524205 | 8.3:-12048442 | None:intergenic |
| CGGTGCCGTTTACGGATGTC+AGG | 0.524230 | 8.3:+12048756 | MS.gene58054:CDS |
| ATTACATTCGTTGATTCTGA+AGG | 0.526108 | 8.3:+12055395 | MS.gene58054:CDS |
| CATGTTGCTTTATTGTAGCA+AGG | 0.529261 | 8.3:-12051866 | None:intergenic |
| CCTGCAACAGTGGAAGACTT+CGG | 0.529538 | 8.3:-12053507 | None:intergenic |
| TAGATCACTCACTTTCTATG+AGG | 0.529636 | 8.3:+12056113 | MS.gene58054:CDS |
| TACTCTGAAAATCATTTACT+AGG | 0.531390 | 8.3:-12052612 | None:intergenic |
| TCAGCATATGTTGAGTCATA+CGG | 0.535823 | 8.3:-12055628 | None:intergenic |
| CGTGCAAGAGGAACAGCCCT+GGG | 0.536269 | 8.3:-12053171 | None:intergenic |
| AGAGTTGTGAAGTTGTTTCA+CGG | 0.540999 | 8.3:-12053383 | None:intergenic |
| ATAAAGTTAACGATCCTACT+CGG | 0.541310 | 8.3:+12053310 | MS.gene58054:CDS |
| TTGACAATTTGTCGCTAGTG+TGG | 0.541332 | 8.3:+12054640 | MS.gene58054:CDS |
| AACAGCCCTGGGCAGTTCCA+AGG | 0.543642 | 8.3:-12053160 | None:intergenic |
| AGACTTGGATACCTTACAAA+GGG | 0.544915 | 8.3:+12048588 | MS.gene58054:intron |
| TTAGTCTGGGAAGACTTTGG+AGG | 0.547486 | 8.3:-12053474 | None:intergenic |
| ATATATTGCCATCCAAGAGC+AGG | 0.548583 | 8.3:-12048797 | None:intergenic |
| GACAATTTGTCGCTAGTGTG+GGG | 0.550600 | 8.3:+12054642 | MS.gene58054:CDS |
| ATCTCCTTTAGGTTCTAAAG+AGG | 0.552905 | 8.3:+12054677 | MS.gene58054:CDS |
| AGCAACATGTTCTTCTTGTG+AGG | 0.554703 | 8.3:+12051880 | MS.gene58054:CDS |
| TAAGTGTTCCTCAGTTCCAT+AGG | 0.558117 | 8.3:+12053277 | MS.gene58054:CDS |
| ATCCAAATGTCAACGTTCTG+CGG | 0.559406 | 8.3:+12056145 | MS.gene58054:CDS |
| CGGAGGATCAAGGTTAGTCT+GGG | 0.560263 | 8.3:-12053487 | None:intergenic |
| TGGAAGACTTCGGAGGATCA+AGG | 0.561546 | 8.3:-12053497 | None:intergenic |
| TTACATTCGTTGATTCTGAA+GGG | 0.563166 | 8.3:+12055396 | MS.gene58054:CDS |
| ACGTGCAAGAGGAACAGCCC+TGG | 0.564141 | 8.3:-12053172 | None:intergenic |
| ATAGAAATATAGCGGAGGAT+AGG | 0.564378 | 8.3:-12051823 | None:intergenic |
| GGCATACTCCTGCTCTTGGA+TGG | 0.564573 | 8.3:+12048789 | MS.gene58054:CDS |
| ATCAAGGTTAGTCTCTATAC+GGG | 0.567707 | 8.3:-12053451 | None:intergenic |
| CTCTTGGTTCTCATTCAAAG+TGG | 0.569677 | 8.3:-12053223 | None:intergenic |
| GCACCGCCCTAATGGTGTAA+AGG | 0.570683 | 8.3:-12048739 | None:intergenic |
| TGCTGAAATTGTATATTCCA+AGG | 0.571019 | 8.3:+12048402 | MS.gene58054:CDS |
| AGATTGAAGTTAATTAAGCA+AGG | 0.571779 | 8.3:+12048466 | MS.gene58054:CDS |
| AGATCACTCACTTTCTATGA+GGG | 0.574815 | 8.3:+12056114 | MS.gene58054:CDS |
| GACCATAAAGAACCAGTGGC+AGG | 0.582467 | 8.3:+12055690 | MS.gene58054:CDS |
| AAACCTCATTCCGTAATTCG+TGG | 0.586426 | 8.3:-12055472 | None:intergenic |
| TGCTTAAAATAGTTATGCAA+TGG | 0.587889 | 8.3:-12058918 | None:intergenic |
| CCGCTATATTTCTATAGTGG+AGG | 0.600648 | 8.3:+12051831 | MS.gene58054:CDS |
| AGGGCTGTTCCTCTTGCACG+TGG | 0.602086 | 8.3:+12053174 | MS.gene58054:CDS |
| TCTGAAGGTCCACGTGCAAG+AGG | 0.602772 | 8.3:-12053183 | None:intergenic |
| ATCACTCACTTTCTATGAGG+GGG | 0.605738 | 8.3:+12056116 | MS.gene58054:CDS |
| AGTAAATGAAAACCTGCCAC+TGG | 0.606222 | 8.3:-12055702 | None:intergenic |
| TAAAGTTAACGATCCTACTC+GGG | 0.607207 | 8.3:+12053311 | MS.gene58054:CDS |
| GGAAACAAAAGAAATAATTG+AGG | 0.607828 | 8.3:-12058950 | None:intergenic |
| GATTGAAGTTAATTAAGCAA+GGG | 0.611023 | 8.3:+12048467 | MS.gene58054:CDS |
| TGAATAGAGAGGTCCCGAGT+AGG | 0.612993 | 8.3:-12053324 | None:intergenic |
| TCATCTTCTAATGAACTGGA+AGG | 0.615316 | 8.3:+12048379 | MS.gene58054:CDS |
| CAGACTTGGATACCTTACAA+AGG | 0.621609 | 8.3:+12048587 | MS.gene58054:intron |
| ATGGATTCAGGGCCAATGAG+AGG | 0.623055 | 8.3:+12053424 | MS.gene58054:CDS |
| AGCAGCGTAATCGCTGTCGT+CGG | 0.627659 | 8.3:-12048136 | None:intergenic |
| CTTCATGTAGAGTATCTCCT+CGG | 0.629342 | 8.3:+12055931 | MS.gene58054:intron |
| GATCACTCACTTTCTATGAG+GGG | 0.630531 | 8.3:+12056115 | MS.gene58054:CDS |
| TGCTTTCTCAGATTCTCAGG+AGG | 0.635889 | 8.3:+12053551 | MS.gene58054:CDS |
| CGTAATCGCTGTCGTCGGAG+AGG | 0.638919 | 8.3:-12048131 | None:intergenic |
| CTTTGAATGAGAACCAAGAG+AGG | 0.640947 | 8.3:+12053226 | MS.gene58054:CDS |
| TAAATTGAATCAAAATCCAG+CGG | 0.641822 | 8.3:-12058971 | None:intergenic |
| TCATCAGCTGACATATCTGA+AGG | 0.645761 | 8.3:-12053198 | None:intergenic |
| AAATATAAATGGTAGGTCTG+GGG | 0.648548 | 8.3:+12055586 | MS.gene58054:intron |
| ATCGATTATCACCATAAACA+AGG | 0.649905 | 8.3:-12048494 | None:intergenic |
| AGGGCTTATTGAGAAAGATG+TGG | 0.650713 | 8.3:+12055991 | MS.gene58054:CDS |
| TGAGAGAGAATTCCTGAAGT+CGG | 0.654091 | 8.3:+12055648 | MS.gene58054:CDS |
| TCTCCAAAACCTGAATAGAG+AGG | 0.657138 | 8.3:-12053335 | None:intergenic |
| CTTGGTCTCCTATGGAACTG+AGG | 0.665618 | 8.3:-12053285 | None:intergenic |
| GAATCGTTTAGCCTGAGCCG+AGG | 0.669165 | 8.3:-12055948 | None:intergenic |
| CGGATGTCAGGTCAATCAGG+AGG | 0.673482 | 8.3:+12048768 | MS.gene58054:CDS |
| CCACTATAGAAATATAGCGG+AGG | 0.673609 | 8.3:-12051828 | None:intergenic |
| GAACCTAAAGGAGATTGCCG+CGG | 0.677661 | 8.3:-12054669 | None:intergenic |
| CCTCCACTATAGAAATATAG+CGG | 0.683681 | 8.3:-12051831 | None:intergenic |
| TGTGATGGAGGATGAATCAG+AGG | 0.686242 | 8.3:+12057136 | MS.gene58054:CDS |
| ACCTTACAAAGGGCATAACG+CGG | 0.687799 | 8.3:+12048598 | MS.gene58054:CDS |
| ACGAGACCATAAAGAACCAG+TGG | 0.699407 | 8.3:+12055686 | MS.gene58054:CDS |
| CGCTAGTGTGGGGAAAACCG+CGG | 0.700201 | 8.3:+12054652 | MS.gene58054:CDS |
| GCAACAGTGGAAGACTTCGG+AGG | 0.708531 | 8.3:-12053504 | None:intergenic |
| AACCAAGAGAGGAATGACAG+TGG | 0.713755 | 8.3:+12053237 | MS.gene58054:CDS |
| AAACCTTTACACCATTAGGG+CGG | 0.720822 | 8.3:+12048736 | MS.gene58054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 12048108 | 12058997 | 12048108 | ID=MS.gene58054 |
| chr8.3 | mRNA | 12048108 | 12058997 | 12048108 | ID=MS.gene58054.t1;Parent=MS.gene58054 |
| chr8.3 | exon | 12048108 | 12048173 | 12048108 | ID=MS.gene58054.t1.exon1;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12048108 | 12048173 | 12048108 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12048334 | 12048504 | 12048334 | ID=MS.gene58054.t1.exon2;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12048334 | 12048504 | 12048334 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12048590 | 12048641 | 12048590 | ID=MS.gene58054.t1.exon3;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12048590 | 12048641 | 12048590 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12048732 | 12048839 | 12048732 | ID=MS.gene58054.t1.exon4;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12048732 | 12048839 | 12048732 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12051817 | 12051901 | 12051817 | ID=MS.gene58054.t1.exon5;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12051817 | 12051901 | 12051817 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12052588 | 12052642 | 12052588 | ID=MS.gene58054.t1.exon6;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12052588 | 12052642 | 12052588 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12053147 | 12053572 | 12053147 | ID=MS.gene58054.t1.exon7;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12053147 | 12053572 | 12053147 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12054639 | 12054698 | 12054639 | ID=MS.gene58054.t1.exon8;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12054639 | 12054698 | 12054639 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12055392 | 12055490 | 12055392 | ID=MS.gene58054.t1.exon9;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12055392 | 12055490 | 12055392 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12055601 | 12055711 | 12055601 | ID=MS.gene58054.t1.exon10;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12055601 | 12055711 | 12055601 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12055941 | 12056012 | 12055941 | ID=MS.gene58054.t1.exon11;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12055941 | 12056012 | 12055941 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12056102 | 12056218 | 12056102 | ID=MS.gene58054.t1.exon12;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12056102 | 12056218 | 12056102 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12057104 | 12057253 | 12057104 | ID=MS.gene58054.t1.exon13;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12057104 | 12057253 | 12057104 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| chr8.3 | exon | 12058897 | 12058997 | 12058897 | ID=MS.gene58054.t1.exon14;Parent=MS.gene58054.t1 |
| chr8.3 | CDS | 12058897 | 12058997 | 12058897 | ID=cds.MS.gene58054.t1;Parent=MS.gene58054.t1 |
| Gene Sequence |
| Protein sequence |
