AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58093

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58093.t1 MTR_8g092870 97.136 419 11 1 1 419 1 418 0.0 818
MS.gene58093.t1 MTR_3g095730 64.789 426 136 6 1 419 1 419 0.0 535
MS.gene58093.t1 MTR_5g077510 29.263 434 261 19 8 419 33 442 4.15e-39 146
MS.gene58093.t1 MTR_5g015210 30.673 401 245 12 5 401 63 434 1.34e-38 144
MS.gene58093.t1 MTR_7g106340 30.073 409 251 12 8 397 6 398 1.55e-37 141
MS.gene58093.t1 MTR_6g071340 27.830 424 266 13 8 408 3 409 1.76e-37 141
MS.gene58093.t1 MTR_2g087350 28.607 402 253 9 8 397 4 383 3.71e-35 134
MS.gene58093.t1 MTR_5g048050 27.123 424 269 13 8 408 23 429 4.55e-34 132
MS.gene58093.t1 MTR_1g017770 27.873 409 242 13 10 401 45 417 6.25e-33 129
MS.gene58093.t1 MTR_1g056880 28.054 442 269 13 8 419 5 427 1.26e-32 128
MS.gene58093.t1 MTR_1g056870 27.602 442 271 13 8 419 5 427 1.84e-31 125
MS.gene58093.t1 MTR_3g065080 25.935 401 271 10 8 398 34 418 3.83e-30 121
MS.gene58093.t1 MTR_4g085720 28.288 403 260 11 5 399 9 390 3.49e-28 115
MS.gene58093.t1 MTR_1g056840 26.923 442 248 13 8 419 5 401 3.83e-28 115
MS.gene58093.t1 MTR_4g063800 26.952 397 255 12 9 396 254 624 1.00e-27 116
MS.gene58093.t1 MTR_7g059405 25.558 403 256 14 10 400 264 634 2.21e-26 112
MS.gene58093.t1 MTR_4g485520 26.359 368 229 12 2 354 97 437 9.35e-26 109
MS.gene58093.t1 MTR_4g051515 25.829 422 274 15 8 409 4 406 1.08e-25 108
MS.gene58093.t1 MTR_4g485520 26.230 366 222 12 7 354 270 605 1.34e-25 109
MS.gene58093.t1 MTR_3g096370 29.250 400 262 9 8 399 8 394 3.06e-25 107
MS.gene58093.t1 MTR_2g018010 26.942 412 260 12 5 399 287 674 4.40e-25 108
MS.gene58093.t1 MTR_1g056910 27.007 411 261 14 8 403 4 390 1.90e-24 104
MS.gene58093.t1 MTR_4g028960 26.764 411 258 14 8 399 278 664 6.41e-23 101
MS.gene58093.t1 MTR_1g094215 26.542 373 235 11 10 366 64 413 7.47e-21 94.7
MS.gene58093.t1 MTR_1g094215 26.542 373 235 11 10 366 247 596 1.81e-20 94.4
MS.gene58093.t1 MTR_7g116600 27.569 399 254 15 11 399 79 452 3.50e-20 92.8
MS.gene58093.t1 MTR_5g083030 25.722 381 222 15 6 354 289 640 2.59e-19 90.9
MS.gene58093.t1 MTR_3g078160 24.818 411 258 14 11 399 276 657 2.39e-18 87.8
MS.gene58093.t1 MTR_3g078160 24.818 411 258 14 11 399 276 657 2.68e-18 87.8
MS.gene58093.t1 MTR_4g107010 57.812 64 27 0 11 74 281 344 5.75e-18 86.7
MS.gene58093.t1 MTR_7g053260 25.187 401 268 11 8 400 76 452 4.31e-17 83.2
MS.gene58093.t1 MTR_3g085610 36.879 141 72 6 11 144 281 411 8.91e-17 83.2
MS.gene58093.t1 MTR_7g078330 24.363 353 236 10 8 354 272 599 1.05e-16 82.8
MS.gene58093.t1 MTR_5g034440 55.556 63 28 0 14 76 284 346 2.05e-16 82.0
MS.gene58093.t1 MTR_1g069845 43.478 69 39 0 8 76 122 190 9.38e-16 79.7
MS.gene58093.t1 MTR_7g097020 43.750 80 43 1 8 87 239 316 1.30e-15 79.3
MS.gene58093.t1 MTR_1g069845 43.478 69 39 0 8 76 239 307 1.56e-15 79.3
MS.gene58093.t1 MTR_1g069845 43.478 69 39 0 8 76 243 311 1.63e-15 79.0
MS.gene58093.t1 MTR_4g091880 46.377 69 36 1 10 77 5 73 1.08e-14 75.1
MS.gene58093.t1 MTR_4g091880 43.836 73 40 1 6 77 1 73 1.08e-14 75.5
MS.gene58093.t1 MTR_3g078160 50.000 64 32 0 11 74 276 339 1.60e-14 75.9
MS.gene58093.t1 MTR_2g011140 26.250 400 242 15 14 399 19 379 1.87e-13 72.0
MS.gene58093.t1 MTR_1g093965 50.877 57 28 0 23 79 1 57 4.82e-13 68.2
MS.gene58093.t1 MTR_1g079450 25.418 299 178 10 4 284 57 328 6.86e-13 70.5
MS.gene58093.t1 MTR_3g466220 41.667 72 42 0 8 79 210 281 1.97e-12 69.7
MS.gene58093.t1 MTR_3g466220 41.667 72 42 0 8 79 231 302 1.97e-12 69.7
MS.gene58093.t1 MTR_3g096370 28.514 249 124 10 8 243 8 215 2.65e-12 67.4
MS.gene58093.t1 MTR_1g093995 49.123 57 29 0 23 79 1 57 3.44e-12 65.5
MS.gene58093.t1 MTR_7g117890 44.615 65 36 0 14 78 259 323 3.52e-12 68.9
MS.gene58093.t1 MTR_8g077205 43.478 69 39 0 8 76 161 229 6.49e-12 67.8
MS.gene58093.t1 MTR_8g077205 43.478 69 39 0 8 76 273 341 7.51e-12 67.8
MS.gene58093.t1 MTR_8g080280 35.632 87 52 2 11 97 283 365 1.95e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58093.t1 AT5G64660 54.651 430 174 7 1 419 1 420 1.14e-145 421
MS.gene58093.t1 AT5G09800 53.791 422 179 7 1 419 1 409 4.65e-136 396
MS.gene58093.t1 AT3G18710 49.883 429 191 10 1 419 1 415 2.98e-130 382
MS.gene58093.t1 AT3G19380 29.082 392 248 10 5 384 9 382 5.00e-37 140
MS.gene58093.t1 AT5G65920 29.563 389 248 10 10 397 60 423 3.61e-35 135
MS.gene58093.t1 AT5G65920 29.563 389 248 10 10 397 60 423 3.61e-35 135
MS.gene58093.t1 AT2G35930 27.500 400 263 10 8 398 10 391 8.66e-35 133
MS.gene58093.t1 AT1G66160 26.485 404 262 13 4 398 27 404 4.75e-34 132
MS.gene58093.t1 AT3G49810 29.487 390 247 12 10 397 64 427 3.58e-33 130
MS.gene58093.t1 AT1G49780 27.700 426 284 11 5 419 9 421 4.97e-32 126
MS.gene58093.t1 AT3G52450 25.882 425 267 12 8 398 5 415 1.54e-30 122
MS.gene58093.t1 AT1G23030 25.432 405 263 14 8 405 239 611 1.77e-27 115
MS.gene58093.t1 AT2G28830 26.392 413 253 14 11 403 185 566 2.16e-27 114
MS.gene58093.t1 AT3G46510 25.791 411 240 15 10 396 256 625 1.11e-26 113
MS.gene58093.t1 AT5G37490 25.610 410 269 12 8 403 29 416 3.65e-26 110
MS.gene58093.t1 AT3G54850 27.195 353 228 9 10 354 248 579 5.92e-25 107
MS.gene58093.t1 AT1G71020 26.150 413 258 17 8 403 93 475 1.52e-24 105
MS.gene58093.t1 AT1G71020 26.150 413 258 17 8 403 241 623 3.55e-24 105
MS.gene58093.t1 AT1G66160 24.752 404 253 14 4 398 27 388 4.13e-24 103
MS.gene58093.t1 AT5G42340 26.786 280 181 8 8 283 288 547 7.66e-22 98.6
MS.gene58093.t1 AT3G11840 26.196 439 254 16 8 396 8 426 1.28e-21 97.1
MS.gene58093.t1 AT1G29340 25.592 422 270 15 5 408 300 695 2.12e-20 94.4
MS.gene58093.t1 AT5G01830 52.239 67 32 0 10 76 274 340 8.14e-19 89.4
MS.gene58093.t1 AT4G21350 24.745 392 253 13 6 389 1 358 1.66e-18 87.0
MS.gene58093.t1 AT3G54790 34.653 101 58 1 8 100 200 300 2.96e-17 84.7
MS.gene58093.t1 AT3G54790 34.653 101 58 1 8 100 236 336 4.03e-17 84.3
MS.gene58093.t1 AT3G54790 34.653 101 58 1 8 100 236 336 4.03e-17 84.3
MS.gene58093.t1 AT3G07360 24.586 362 235 14 8 355 72 409 1.79e-15 78.6
MS.gene58093.t1 AT1G67530 35.644 101 60 2 11 111 273 368 3.49e-13 71.6
MS.gene58093.t1 AT1G01660 42.466 73 42 0 4 76 491 563 3.53e-13 71.6
MS.gene58093.t1 AT1G01660 42.466 73 42 0 4 76 492 564 3.83e-13 71.6
MS.gene58093.t1 AT1G67530 35.644 101 60 2 11 111 273 368 4.75e-13 71.6
MS.gene58093.t1 AT1G67530 35.644 101 60 2 11 111 273 368 4.75e-13 71.6
MS.gene58093.t1 AT1G67530 35.644 101 60 2 11 111 273 368 4.75e-13 71.6
MS.gene58093.t1 AT1G10560 24.242 363 225 13 16 354 294 630 4.76e-13 71.6
MS.gene58093.t1 AT1G27910 40.230 87 48 2 11 97 280 362 6.14e-13 71.2
MS.gene58093.t1 AT5G18320 24.138 290 208 6 8 295 70 349 1.11e-12 69.7
MS.gene58093.t1 AT1G60190 23.810 357 239 10 14 355 282 620 1.21e-12 70.1
MS.gene58093.t1 AT1G24330 34.545 110 67 3 11 120 276 380 1.22e-12 70.5
MS.gene58093.t1 AT1G24330 34.545 110 67 3 11 120 276 380 1.22e-12 70.5
MS.gene58093.t1 AT5G18330 23.120 359 243 11 8 358 63 396 2.60e-12 68.6
MS.gene58093.t1 AT2G23140 44.444 63 35 0 14 76 237 299 1.42e-11 67.0
MS.gene58093.t1 AT2G23140 44.444 63 35 0 14 76 234 296 1.52e-11 67.0
MS.gene58093.t1 AT2G23140 44.444 63 35 0 14 76 234 296 1.52e-11 67.0
MS.gene58093.t1 AT2G23140 44.444 63 35 0 14 76 45 107 1.94e-11 66.2
MS.gene58093.t1 AT2G23140 44.444 63 35 0 14 76 45 107 1.94e-11 66.2

Find 83 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATAATATGAGTAGTTT+TGG 0.313107 4.2:+9335922 None:intergenic
GGAGGGATTCGTGTGCGTTC+TGG 0.338842 4.2:-9336734 MS.gene58093:CDS
ACGAAAGTGCGTTCTCCATT+AGG 0.348641 4.2:+9336392 None:intergenic
GAAACGGAACAAGGCGAAAC+TGG 0.354390 4.2:-9336347 MS.gene58093:CDS
TCACCGTTCCGAGTTTATTC+CGG 0.356758 4.2:-9337131 MS.gene58093:CDS
AATCAAAATCAAAATCAAAA+TGG 0.359583 4.2:+9335902 None:intergenic
GGTTGTTATTGCGTTGGATT+TGG 0.360751 4.2:-9336653 MS.gene58093:CDS
TTCATGACGTCGAGGGAAAT+AGG 0.377245 4.2:+9337105 None:intergenic
AACTCGGTGACGCCGTTAGA+AGG 0.386589 4.2:+9336293 None:intergenic
GGAGAACGCACTTTCGTGTT+TGG 0.389136 4.2:-9336386 MS.gene58093:CDS
TCGGTGTATAACGGAGATTC+CGG 0.396983 4.2:+9336895 None:intergenic
GCACACGAATCCCTCCGTTT+TGG 0.409841 4.2:+9336741 None:intergenic
AGCGCCGTCGTGTGTGGTGG+CGG 0.420683 4.2:-9336188 MS.gene58093:CDS
CCAAGGATTTCGTTCCGAAC+CGG 0.425782 4.2:-9336975 MS.gene58093:CDS
GAACCGAATCGGACCAGATC+TGG 0.426727 4.2:+9336935 None:intergenic
GACTCGGTGGCGAACCGAAT+CGG 0.451818 4.2:+9336924 None:intergenic
TTATCTATTTCGTGATCAAA+AGG 0.458454 4.2:-9336092 MS.gene58093:CDS
CGCGTGCTCCGTCGCTGCGG+TGG 0.462131 4.2:+9336138 None:intergenic
TTGAGTCAGGTAGTGAGAAC+CGG 0.463717 4.2:-9336828 MS.gene58093:CDS
GAGTGTGGAATTGCTTGAAC+AGG 0.467131 4.2:-9336674 MS.gene58093:CDS
CATCCAGATCTGGTCCGATT+CGG 0.468264 4.2:-9336938 MS.gene58093:CDS
ATCCAACGCTGGCTCGATAA+CGG 0.470884 4.2:-9337036 MS.gene58093:CDS
ATTAGGTTCTGATCTTTCTC+CGG 0.473675 4.2:+9336409 None:intergenic
CCGGTTCGGAACGAAATCCT+TGG 0.487110 4.2:+9336975 None:intergenic
AGCCTCTGTAACGTCCGGTT+CGG 0.488322 4.2:+9336961 None:intergenic
GGAGAAAGATCAGAACCTAA+TGG 0.501306 4.2:-9336407 MS.gene58093:CDS
TACAGAGGCTCATCCAGATC+TGG 0.511051 4.2:-9336948 MS.gene58093:CDS
TAGCAATCTCAACGTCGAAA+CGG 0.512266 4.2:-9336363 MS.gene58093:CDS
GGTGTTGAAACTTATAGAAA+CGG 0.512499 4.2:-9336248 MS.gene58093:CDS
ACGGTGTCGTCGACAAAGGA+AGG 0.515605 4.2:-9336229 MS.gene58093:CDS
TACCGTTATCGAGCCAGCGT+TGG 0.518220 4.2:+9337034 None:intergenic
TTTCTTGATAATGTTGATGG+AGG 0.529867 4.2:-9336706 MS.gene58093:CDS
CTCAACGTCGAAACGGAACA+AGG 0.536307 4.2:-9336356 MS.gene58093:CDS
AGAAACGGTGTCGTCGACAA+AGG 0.541994 4.2:-9336233 MS.gene58093:CDS
GGATGAGCCTCTGTAACGTC+CGG 0.544595 4.2:+9336956 None:intergenic
TCAACAGACTCGGTGTATAA+CGG 0.556543 4.2:+9336886 None:intergenic
TGAACAGGTTGTTATTGCGT+TGG 0.556947 4.2:-9336659 MS.gene58093:CDS
TGAAGAATCTGCATAGTGGC+GGG 0.558784 4.2:+9337000 None:intergenic
AGTCGCTTGTGAAAATTGTA+CGG 0.565379 4.2:-9336801 MS.gene58093:CDS
GAGATTCCGGCGAGTCGACT+CGG 0.566820 4.2:+9336908 None:intergenic
GGTCTTCTCGAACCTTCTAA+CGG 0.571682 4.2:-9336305 MS.gene58093:CDS
CCTCGACGTCATGAAATCTC+CGG 0.572480 4.2:-9337097 MS.gene58093:CDS
GAAAGTATCCACCGCAGCGA+CGG 0.573216 4.2:-9336146 MS.gene58093:CDS
GAGTTTATGTGTTTCTGTGA+CGG 0.574001 4.2:-9336275 MS.gene58093:CDS
ACTCCGGTGCAGAGACTCAC+CGG 0.580529 4.2:+9337078 None:intergenic
GGTGTTGAAATTCATAGCGG+TGG 0.581421 4.2:-9336500 MS.gene58093:CDS
CGGAGATTTCATGACGTCGA+GGG 0.581997 4.2:+9337098 None:intergenic
ATGCGAAGCGCCGTCGTGTG+TGG 0.582842 4.2:-9336194 MS.gene58093:CDS
GTCGACAAAGGAAGGGAGGT+CGG 0.586477 4.2:-9336221 MS.gene58093:CDS
TGGAGGAGTTGAACAGAGTG+TGG 0.586843 4.2:-9336689 MS.gene58093:CDS
CGAAGCGCCGTCGTGTGTGG+TGG 0.591962 4.2:-9336191 MS.gene58093:CDS
GGTTCATCTCGGAGCAGTGA+AGG 0.592190 4.2:-9336326 MS.gene58093:CDS
GAAGCTGTTACGAAAGCGAA+TGG 0.592982 4.2:-9336064 MS.gene58093:CDS
ACAGACATTTGACGAACTTG+TGG 0.593505 4.2:+9336001 None:intergenic
AAGGCGAAACTGGTTCATCT+CGG 0.598473 4.2:-9336337 MS.gene58093:CDS
TCGCCACCGAGTCGACTCGC+CGG 0.598739 4.2:-9336914 MS.gene58093:CDS
GGTTTGAAGAATCTGCATAG+TGG 0.603561 4.2:+9336996 None:intergenic
TTGGATACTTGAACGGTCGT+AGG 0.604139 4.2:+9337053 None:intergenic
ATGTGTTTCTGTGACGGAGA+AGG 0.608428 4.2:-9336269 MS.gene58093:CDS
TCTCCGGTGAGTCTCTGCAC+CGG 0.610333 4.2:-9337081 MS.gene58093:CDS
TTGATTCTTGTTCTTCAACA+AGG 0.611383 4.2:-9336553 MS.gene58093:CDS
TTGAAGAATCTGCATAGTGG+CGG 0.623643 4.2:+9336999 None:intergenic
CACCGCAGCGACGGAGCACG+CGG 0.624475 4.2:-9336137 MS.gene58093:CDS
AACCGCGTGCTCCGTCGCTG+CGG 0.626410 4.2:+9336135 None:intergenic
TATGCAGATTCTTCAAACCA+AGG 0.633645 4.2:-9336992 MS.gene58093:CDS
TTCCGAACCGGACGTTACAG+AGG 0.635065 4.2:-9336963 MS.gene58093:CDS
ATAGGACACCGGAATAAACT+CGG 0.640762 4.2:+9337123 None:intergenic
ATCACGTCTATCAACAGACT+CGG 0.644157 4.2:+9336876 None:intergenic
GGTGGCGGCGATAGTTAACA+AGG 0.648696 4.2:-9336173 MS.gene58093:CDS
TGAACGGTCGTAGGTAACTC+CGG 0.649804 4.2:+9337062 None:intergenic
GTCACAGAAACACATAAACT+CGG 0.652220 4.2:+9336277 None:intergenic
GCCAGCGTTGGATACTTGAA+CGG 0.652606 4.2:+9337046 None:intergenic
ACCGTTCAAGTATCCAACGC+TGG 0.658519 4.2:-9337047 MS.gene58093:CDS
ATCGCCGCCACCACACACGA+CGG 0.660437 4.2:+9336184 None:intergenic
CGGTGTCGTCGACAAAGGAA+GGG 0.661079 4.2:-9336228 MS.gene58093:CDS
ACACCGGAATAAACTCGGAA+CGG 0.672519 4.2:+9337128 None:intergenic
CCGGAGATTTCATGACGTCG+AGG 0.678266 4.2:+9337097 None:intergenic
AGCACGCGGTTACAATACTG+TGG 0.681709 4.2:-9336123 MS.gene58093:CDS
ATTCCGGCGAGTCGACTCGG+TGG 0.696812 4.2:+9336911 None:intergenic
TGTCGTCGACAAAGGAAGGG+AGG 0.709533 4.2:-9336225 MS.gene58093:CDS
ATTGCTCAATCAAATCACGC+CGG 0.719116 4.2:-9336428 MS.gene58093:CDS
CGTCGAGGGAAATAGGACAC+CGG 0.731507 4.2:+9337112 None:intergenic
TAGGGTGTTGAAATTCATAG+CGG 0.751361 4.2:-9336503 MS.gene58093:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTATCTATTTCGTGATCAAA+AGG - chr4.2:9336977-9336996 MS.gene58093:CDS 25.0%
!!! AGTTTTCTTGATAATGTTGA+TGG - chr4.2:9336360-9336379 MS.gene58093:CDS 25.0%
TTGATTCTTGTTCTTCAACA+AGG - chr4.2:9336516-9336535 MS.gene58093:CDS 30.0%
TTGCGAATCAAAAATTGCAT+CGG - chr4.2:9336542-9336561 MS.gene58093:CDS 30.0%
! GGTGTTGAAACTTATAGAAA+CGG - chr4.2:9336821-9336840 MS.gene58093:CDS 30.0%
! TGAAGAGAATTGTGTTTTTC+TGG - chr4.2:9336305-9336324 MS.gene58093:CDS 30.0%
! TGGCATAATATGAGTAGTTT+TGG + chr4.2:9337150-9337169 None:intergenic 30.0%
!! AATCAAAAATTGCATCGGTT+AGG - chr4.2:9336547-9336566 MS.gene58093:CDS 30.0%
!! ATCAAAAATTGCATCGGTTA+GGG - chr4.2:9336548-9336567 MS.gene58093:CDS 30.0%
!! TTTCTTGATAATGTTGATGG+AGG - chr4.2:9336363-9336382 MS.gene58093:CDS 30.0%
AGTCGCTTGTGAAAATTGTA+CGG - chr4.2:9336268-9336287 MS.gene58093:CDS 35.0%
CTTCTAGTAGCTGAAAAAGA+AGG - chr4.2:9336606-9336625 MS.gene58093:CDS 35.0%
GTCACAGAAACACATAAACT+CGG + chr4.2:9336795-9336814 None:intergenic 35.0%
TATGCAGATTCTTCAAACCA+AGG - chr4.2:9336077-9336096 MS.gene58093:CDS 35.0%
! ATTAGGTTCTGATCTTTCTC+CGG + chr4.2:9336663-9336682 None:intergenic 35.0%
! GAGTTTATGTGTTTCTGTGA+CGG - chr4.2:9336794-9336813 MS.gene58093:CDS 35.0%
!! ATCGATTTTGAAGAGCAAGA+AGG - chr4.2:9336464-9336483 MS.gene58093:CDS 35.0%
!! TAGGGTGTTGAAATTCATAG+CGG - chr4.2:9336566-9336585 MS.gene58093:CDS 35.0%
!! TTGTGTTTTTCTGGCCAAAA+CGG - chr4.2:9336314-9336333 MS.gene58093:CDS 35.0%
ACAGACATTTGACGAACTTG+TGG + chr4.2:9337071-9337090 None:intergenic 40.0%
ATAGGACACCGGAATAAACT+CGG + chr4.2:9335949-9335968 None:intergenic 40.0%
ATCACGTCTATCAACAGACT+CGG + chr4.2:9336196-9336215 None:intergenic 40.0%
ATTGCTCAATCAAATCACGC+CGG - chr4.2:9336641-9336660 MS.gene58093:CDS 40.0%
GGAGAAAGATCAGAACCTAA+TGG - chr4.2:9336662-9336681 MS.gene58093:CDS 40.0%
GGTTTGAAGAATCTGCATAG+TGG + chr4.2:9336076-9336095 None:intergenic 40.0%
TAGCAATCTCAACGTCGAAA+CGG - chr4.2:9336706-9336725 MS.gene58093:CDS 40.0%
TTGAAGAATCTGCATAGTGG+CGG + chr4.2:9336073-9336092 None:intergenic 40.0%
! GGTTGTTATTGCGTTGGATT+TGG - chr4.2:9336416-9336435 MS.gene58093:CDS 40.0%
! TGAACAGGTTGTTATTGCGT+TGG - chr4.2:9336410-9336429 MS.gene58093:CDS 40.0%
!! TCAACAGACTCGGTGTATAA+CGG + chr4.2:9336186-9336205 None:intergenic 40.0%
!!! GCTATCACTGATTTTGAGTC+AGG - chr4.2:9336228-9336247 MS.gene58093:CDS 40.0%
ACACCGGAATAAACTCGGAA+CGG + chr4.2:9335944-9335963 None:intergenic 45.0%
GAAGCTGTTACGAAAGCGAA+TGG - chr4.2:9337005-9337024 MS.gene58093:CDS 45.0%
GAGTGTGGAATTGCTTGAAC+AGG - chr4.2:9336395-9336414 MS.gene58093:CDS 45.0%
GGTCTTCTCGAACCTTCTAA+CGG - chr4.2:9336764-9336783 MS.gene58093:CDS 45.0%
TCACCGTTCCGAGTTTATTC+CGG - chr4.2:9335938-9335957 MS.gene58093:CDS 45.0%
TGAAGAATCTGCATAGTGGC+GGG + chr4.2:9336072-9336091 None:intergenic 45.0%
TTCATGACGTCGAGGGAAAT+AGG + chr4.2:9335967-9335986 None:intergenic 45.0%
TTGAGTCAGGTAGTGAGAAC+CGG - chr4.2:9336241-9336260 MS.gene58093:CDS 45.0%
TTGGATACTTGAACGGTCGT+AGG + chr4.2:9336019-9336038 None:intergenic 45.0%
! AAGGCGAAACTGGTTCATCT+CGG - chr4.2:9336732-9336751 MS.gene58093:CDS 45.0%
! ACGAAAGTGCGTTCTCCATT+AGG + chr4.2:9336680-9336699 None:intergenic 45.0%
! ATGTGTTTCTGTGACGGAGA+AGG - chr4.2:9336800-9336819 MS.gene58093:CDS 45.0%
! GGTGTTGAAATTCATAGCGG+TGG - chr4.2:9336569-9336588 MS.gene58093:CDS 45.0%
! TCGGTGTATAACGGAGATTC+CGG + chr4.2:9336177-9336196 None:intergenic 45.0%
! TTTTCACAAGCGACTCGAAC+CGG + chr4.2:9336263-9336282 None:intergenic 45.0%
!! GTTTTTCTGGCCAAAACGGA+GGG - chr4.2:9336318-9336337 MS.gene58093:CDS 45.0%
!! TGTTTTTCTGGCCAAAACGG+AGG - chr4.2:9336317-9336336 MS.gene58093:CDS 45.0%
ACCGTTCAAGTATCCAACGC+TGG - chr4.2:9336022-9336041 MS.gene58093:CDS 50.0%
AGCACGCGGTTACAATACTG+TGG - chr4.2:9336946-9336965 MS.gene58093:CDS 50.0%
CATCCAGATCTGGTCCGATT+CGG - chr4.2:9336131-9336150 MS.gene58093:CDS 50.0%
CCAAGGATTTCGTTCCGAAC+CGG - chr4.2:9336094-9336113 MS.gene58093:CDS 50.0%
CCTCGACGTCATGAAATCTC+CGG - chr4.2:9335972-9335991 MS.gene58093:CDS 50.0%
CGGAGATTTCATGACGTCGA+GGG + chr4.2:9335974-9335993 None:intergenic 50.0%
CTCAACGTCGAAACGGAACA+AGG - chr4.2:9336713-9336732 MS.gene58093:CDS 50.0%
GAAACGGAACAAGGCGAAAC+TGG - chr4.2:9336722-9336741 MS.gene58093:CDS 50.0%
GGAGAACGCACTTTCGTGTT+TGG - chr4.2:9336683-9336702 MS.gene58093:CDS 50.0%
TACAGAGGCTCATCCAGATC+TGG - chr4.2:9336121-9336140 MS.gene58093:CDS 50.0%
TGAACGGTCGTAGGTAACTC+CGG + chr4.2:9336010-9336029 None:intergenic 50.0%
TGGAGGAGTTGAACAGAGTG+TGG - chr4.2:9336380-9336399 MS.gene58093:CDS 50.0%
! GCCAGCGTTGGATACTTGAA+CGG + chr4.2:9336026-9336045 None:intergenic 50.0%
!! AGAAACGGTGTCGTCGACAA+AGG - chr4.2:9336836-9336855 MS.gene58093:CDS 50.0%
!! ATCCAACGCTGGCTCGATAA+CGG - chr4.2:9336033-9336052 MS.gene58093:CDS 50.0%
AGCCTCTGTAACGTCCGGTT+CGG + chr4.2:9336111-9336130 None:intergenic 55.0%
CCGGAGATTTCATGACGTCG+AGG + chr4.2:9335975-9335994 None:intergenic 55.0%
CGTCGAGGGAAATAGGACAC+CGG + chr4.2:9335960-9335979 None:intergenic 55.0%
GAACCGAATCGGACCAGATC+TGG + chr4.2:9336137-9336156 None:intergenic 55.0%
GGATGAGCCTCTGTAACGTC+CGG + chr4.2:9336116-9336135 None:intergenic 55.0%
GGTTCATCTCGGAGCAGTGA+AGG - chr4.2:9336743-9336762 MS.gene58093:CDS 55.0%
GTCGACAAAGGAAGGGAGGT+CGG - chr4.2:9336848-9336867 MS.gene58093:CDS 55.0%
TACCGTTATCGAGCCAGCGT+TGG + chr4.2:9336038-9336057 None:intergenic 55.0%
TGTCGTCGACAAAGGAAGGG+AGG - chr4.2:9336844-9336863 MS.gene58093:CDS 55.0%
TTCCGAACCGGACGTTACAG+AGG - chr4.2:9336106-9336125 MS.gene58093:CDS 55.0%
! AACTCGGTGACGCCGTTAGA+AGG + chr4.2:9336779-9336798 None:intergenic 55.0%
! GCACACGAATCCCTCCGTTT+TGG + chr4.2:9336331-9336350 None:intergenic 55.0%
! GGTGGCGGCGATAGTTAACA+AGG - chr4.2:9336896-9336915 MS.gene58093:CDS 55.0%
!! ACGGTGTCGTCGACAAAGGA+AGG - chr4.2:9336840-9336859 MS.gene58093:CDS 55.0%
!! CCGGTTCGGAACGAAATCCT+TGG + chr4.2:9336097-9336116 None:intergenic 55.0%
!! CGGTGTCGTCGACAAAGGAA+GGG - chr4.2:9336841-9336860 MS.gene58093:CDS 55.0%
!! GAAAGTATCCACCGCAGCGA+CGG - chr4.2:9336923-9336942 MS.gene58093:CDS 55.0%
ACTCCGGTGCAGAGACTCAC+CGG + chr4.2:9335994-9336013 None:intergenic 60.0%
GAGATTCCGGCGAGTCGACT+CGG + chr4.2:9336164-9336183 None:intergenic 60.0%
GGAGGGATTCGTGTGCGTTC+TGG - chr4.2:9336335-9336354 MS.gene58093:CDS 60.0%
TCTCCGGTGAGTCTCTGCAC+CGG - chr4.2:9335988-9336007 MS.gene58093:CDS 60.0%
!! GACTCGGTGGCGAACCGAAT+CGG + chr4.2:9336148-9336167 None:intergenic 60.0%
ATCGCCGCCACCACACACGA+CGG + chr4.2:9336888-9336907 None:intergenic 65.0%
!! ATGCGAAGCGCCGTCGTGTG+TGG - chr4.2:9336875-9336894 MS.gene58093:CDS 65.0%
!! ATTCCGGCGAGTCGACTCGG+TGG + chr4.2:9336161-9336180 None:intergenic 65.0%
AACCGCGTGCTCCGTCGCTG+CGG + chr4.2:9336937-9336956 None:intergenic 70.0%
AGCGCCGTCGTGTGTGGTGG+CGG - chr4.2:9336881-9336900 MS.gene58093:CDS 70.0%
!! CGAAGCGCCGTCGTGTGTGG+TGG - chr4.2:9336878-9336897 MS.gene58093:CDS 70.0%
!! TCGCCACCGAGTCGACTCGC+CGG - chr4.2:9336155-9336174 MS.gene58093:CDS 70.0%
CACCGCAGCGACGGAGCACG+CGG - chr4.2:9336932-9336951 MS.gene58093:CDS 75.0%
! CGCGTGCTCCGTCGCTGCGG+TGG + chr4.2:9336934-9336953 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 9335916 9337175 9335916 ID=MS.gene58093
chr4.2 mRNA 9335916 9337175 9335916 ID=MS.gene58093.t1;Parent=MS.gene58093
chr4.2 exon 9335916 9337175 9335916 ID=MS.gene58093.t1.exon1;Parent=MS.gene58093.t1
chr4.2 CDS 9335916 9337175 9335916 ID=cds.MS.gene58093.t1;Parent=MS.gene58093.t1
Gene Sequence

>MS.gene58093

ATGGTAAGAGACGATTTATGCATCACCGTTCCGAGTTTATTCCGGTGTCCTATTTCCCTCGACGTCATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACCTACGACCGTTCAAGTATCCAACGCTGGCTCGATAACGGTAACAACACTTGTCCCGCCACTATGCAGATTCTTCAAACCAAGGATTTCGTTCCGAACCGGACGTTACAGAGGCTCATCCAGATCTGGTCCGATTCGGTTCGCCACCGAGTCGACTCGCCGGAATCTCCGTTATACACCGAGTCTGTTGATAGACGTGATCAATTACTTGTTGCTATCACTGATTTTGAGTCAGGTAGTGAGAACCGGTTCGAGTCGCTTGTGAAAATTGTACGGTTCGCGAAAGATTCTGAAGAGAATTGTGTTTTTCTGGCCAAAACGGAGGGATTCGTGTGCGTTCTGGTAAGTTTTCTTGATAATGTTGATGGAGGAGTTGAACAGAGTGTGGAATTGCTTGAACAGGTTGTTATTGCGTTGGATTTGGTTCTATGTAAAATTGAGAATCGCGAATCGATTTTGAAGAGCAAGAAGGAGAACGAAAGTAAGAGTATACTAGATTCTTTGATTCTTGTTCTTCAACAAGGAAGTTGCGAATCAAAAATTGCATCGGTTAGGGTGTTGAAATTCATAGCGGTGGACACAGAATCGAAGCTTCTAGTAGCTGAAAAAGAAGGTTTACTATCAGAATTGCTCAATCAAATCACGCCGGAGAAAGATCAGAACCTAATGGAGAACGCACTTTCGTGTTTGGTAGCAATCTCAACGTCGAAACGGAACAAGGCGAAACTGGTTCATCTCGGAGCAGTGAAGGTCTTCTCGAACCTTCTAACGGCGTCACCGAGTTTATGTGTTTCTGTGACGGAGAAGGTGTTGAAACTTATAGAAACGGTGTCGTCGACAAAGGAAGGGAGGTCGGAGATATGCGAAGCGCCGTCGTGTGTGGTGGCGGCGATAGTTAACAAGGTTTTGAAAGTATCCACCGCAGCGACGGAGCACGCGGTTACAATACTGTGGAGTGTGTGTTATCTATTTCGTGATCAAAAGGCACAAGAAGCTGTTACGAAAGCGAATGGATTAACGAAGATTTTGCTTCTGATGCAAAGTAATTGCTCGCCACAAGTTCGTCAAATGTCTGTAGATTTGCTTAAGATTTTTCGTGTTAATTCTAAGTCTTGTCTTTCTTCGTATGATACCAAAACTACTCATATTATGCCATTTTGA
Protein sequence

>MS.gene58093.t1

MVRDDLCITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQRLIQIWSDSVRHRVDSPESPLYTESVDRRDQLLVAITDFESGSENRFESLVKIVRFAKDSEENCVFLAKTEGFVCVLVSFLDNVDGGVEQSVELLEQVVIALDLVLCKIENRESILKSKKENESKSILDSLILVLQQGSCESKIASVRVLKFIAVDTESKLLVAEKEGLLSELLNQITPEKDQNLMENALSCLVAISTSKRNKAKLVHLGAVKVFSNLLTASPSLCVSVTEKVLKLIETVSSTKEGRSEICEAPSCVVAAIVNKVLKVSTAATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF