AlfalfaGEDB | MS.gene58473

M. sativa cultivar XinJiangDaYe / MS.gene58473

KEGG: K11752
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58473.t1	XP_003609618.1	91.6	83	7	0	1	83	289	371	1.00E-34	155.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58473.t1	Q8GWP5	44.1	68	38	0	15	82	303	370	5.6e-10	64.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58473.t1	G7JK95	91.6	83	7	0	1	83	289	371	7.2e-35	155.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene58473	0.817129	3.87E-52	-1.69E-46
MS.gene049758	MS.gene58473	0.817803	2.73E-52	-1.69E-46
MS.gene04984	MS.gene58473	0.826577	2.51E-54	-1.69E-46
MS.gene049915	MS.gene58473	0.828487	8.75E-55	-1.69E-46
MS.gene050226	MS.gene58473	0.823018	1.74E-53	-1.69E-46
MS.gene050227	MS.gene58473	0.826667	2.39E-54	-1.69E-46
MS.gene050228	MS.gene58473	0.819851	9.35E-53	-1.69E-46
MS.gene050642	MS.gene58473	0.801302	9.60E-49	-1.69E-46
MS.gene050719	MS.gene58473	0.808427	3.11E-50	-1.69E-46
MS.gene050721	MS.gene58473	0.815736	7.94E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58473.t1	MTR_4g119220	91.566	83	7	0	1	83	289	371	5.51e-49	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58473.t1	AT4G20960	44.118	68	38	0	15	82	303	370	7.21e-14	65.1

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Find 13 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAAATCTGGATGTGATCT+TGG	0.364059	8.1:-8771322	MS.gene58473:CDS
AATTCCCTCTCACATCTAAC+AGG	0.424466	8.1:+8771268	None:intergenic
ACTCCAGAAGAAGCTCAACA+AGG	0.687391	8.1:-8771369	MS.gene58473:CDS
AGGAATTGAAATTGTATCTA+TGG	0.284535	8.1:-8771349	MS.gene58473:CDS
AGTGTCCTGTTAGATGTGAG+AGG	0.685168	8.1:-8771273	MS.gene58473:CDS
ATATGAAGAGCTTGTTAGGA+AGG	0.535431	8.1:-8771238	None:intergenic
ATCTATGGATCAAATAAATC+TGG	0.375725	8.1:-8771334	MS.gene58473:CDS
ATTCCTTGTTGAGCTTCTTC+TGG	0.220389	8.1:+8771366	None:intergenic
GTAACTTCATTGATGACCGA+TGG	0.596622	8.1:+8771432	None:intergenic
GTGAATATGAAGAGCTTGTT+AGG	0.298078	8.1:-8771242	MS.gene58473:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AATAAATCTGGATGTGATCT+TGG	-	chr8.1:8771382-8771401	MS.gene58473:CDS	30.0%
	AATTCCCTCTCACATCTAAC+AGG	+	chr8.1:8771439-8771458	None:intergenic	40.0%
	ATTCCTTGTTGAGCTTCTTC+TGG	+	chr8.1:8771341-8771360	None:intergenic	40.0%
	ACTCCAGAAGAAGCTCAACA+AGG	-	chr8.1:8771335-8771354	MS.gene58473:CDS	45.0%
	AGTGTCCTGTTAGATGTGAG+AGG	-	chr8.1:8771431-8771450	MS.gene58473:CDS	45.0%
	GTGTCCTGTTAGATGTGAGA+GGG	-	chr8.1:8771432-8771451	MS.gene58473:CDS	45.0%
!	AGGAATTGAAATTGTATCTA+TGG	-	chr8.1:8771355-8771374	MS.gene58473:CDS	25.0%
!	ATCTATGGATCAAATAAATC+TGG	-	chr8.1:8771370-8771389	MS.gene58473:CDS	25.0%
!	TTCTTCAAATCAAATTCCAT+CGG	-	chr8.1:8771256-8771275	MS.gene58473:CDS	25.0%
!	TTGGATTATTGTAATCATCA+AGG	-	chr8.1:8771401-8771420	MS.gene58473:CDS	25.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	8771239	8771487	8771239	ID=MS.gene58473
chr8.1	mRNA	8771239	8771487	8771239	ID=MS.gene58473.t1;Parent=MS.gene58473
chr8.1	exon	8771239	8771487	8771239	ID=MS.gene58473.t1.exon1;Parent=MS.gene58473.t1
chr8.1	CDS	8771239	8771487	8771239	ID=cds.MS.gene58473.t1;Parent=MS.gene58473.t1

Gene Sequence	>MS.gene58473 ATGCACAAAGATTCTGCTTCTTCAAATCAAATTCCATCGGTCATCAATGAAGTTACCGATAAAGCGATAATTTTTACAAATTGTAGAACAGCAACAACTCCAGAAGAAGCTCAACAAGGAATTGAAATTGTATCTATGGATCAAATAAATCTGGATGTGATCTTGGATTATTGTAATCATCAAGGATTGTGCAGTGTCCTGTTAGATGTGAGAGGGAATTTCAGTGAATATGAAGAGCTTGTTAGGAAG
Protein sequence	>MS.gene58473.t1 MHKDSASSNQIPSVINEVTDKAIIFTNCRTATTPEEAQQGIEIVSMDQINLDVILDYCNHQGLCSVLLDVRGNFSEYEELVRK