Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58532.t1 | GAU49420.1 | 69.1 | 233 | 34 | 3 | 1 | 196 | 1 | 232 | 2.80E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58532.t1 | Q9FUS8 | 45.5 | 220 | 83 | 2 | 1 | 184 | 1 | 219 | 3.3e-45 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58532.t1 | A0A2Z6PF61 | 69.1 | 233 | 34 | 3 | 1 | 196 | 1 | 232 | 2.0e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene58532 | 0.833431 | 5.36E-56 | -1.69E-46 |
| MS.gene050584 | MS.gene58532 | 0.834263 | 3.32E-56 | -1.69E-46 |
| MS.gene050585 | MS.gene58532 | 0.823439 | 1.38E-53 | -1.69E-46 |
| MS.gene050586 | MS.gene58532 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene050587 | MS.gene58532 | 0.823559 | 1.30E-53 | -1.69E-46 |
| MS.gene051626 | MS.gene58532 | 0.823206 | 1.57E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene58532 | 0.868933 | 4.52E-66 | -1.69E-46 |
| MS.gene052142 | MS.gene58532 | 0.838702 | 2.46E-57 | -1.69E-46 |
| MS.gene052967 | MS.gene58532 | 0.813578 | 2.38E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene58532 | 0.857939 | 1.16E-62 | -1.69E-46 |
| MS.gene05456 | MS.gene58532 | 0.875037 | 4.22E-68 | -1.69E-46 |
| MS.gene054596 | MS.gene58532 | 0.805507 | 1.29E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene58532 | 0.822959 | 1.79E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene58532 | 0.824398 | 8.25E-54 | -1.69E-46 |
| MS.gene059006 | MS.gene58532 | 0.867488 | 1.32E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58532.t1 | MTR_5g037380 | 61.207 | 232 | 50 | 2 | 1 | 196 | 1 | 228 | 5.19e-94 | 273 |
| MS.gene58532.t1 | MTR_8g061950 | 45.045 | 222 | 86 | 3 | 1 | 186 | 1 | 222 | 1.23e-59 | 186 |
| MS.gene58532.t1 | MTR_7g065660 | 31.034 | 232 | 114 | 5 | 1 | 194 | 1 | 224 | 1.06e-30 | 112 |
| MS.gene58532.t1 | MTR_7g065600 | 31.602 | 231 | 112 | 6 | 1 | 193 | 1 | 223 | 1.64e-30 | 111 |
| MS.gene58532.t1 | MTR_7g065720 | 32.759 | 232 | 109 | 6 | 1 | 193 | 1 | 224 | 1.72e-29 | 108 |
| MS.gene58532.t1 | MTR_7g065740 | 32.618 | 233 | 110 | 6 | 1 | 194 | 1 | 225 | 4.70e-29 | 108 |
| MS.gene58532.t1 | MTR_7g065270 | 31.602 | 231 | 112 | 6 | 1 | 193 | 1 | 223 | 4.89e-28 | 105 |
| MS.gene58532.t1 | MTR_7g065265 | 32.035 | 231 | 111 | 6 | 1 | 193 | 1 | 223 | 8.33e-28 | 104 |
| MS.gene58532.t1 | MTR_7g065590 | 31.556 | 225 | 110 | 5 | 5 | 193 | 7 | 223 | 2.34e-27 | 103 |
| MS.gene58532.t1 | MTR_7g065630 | 29.911 | 224 | 115 | 6 | 4 | 194 | 24 | 238 | 3.27e-27 | 103 |
| MS.gene58532.t1 | MTR_7g065290 | 30.736 | 231 | 114 | 6 | 1 | 193 | 1 | 223 | 4.68e-27 | 102 |
| MS.gene58532.t1 | MTR_7g065230 | 32.444 | 225 | 103 | 7 | 5 | 193 | 7 | 218 | 6.45e-27 | 102 |
| MS.gene58532.t1 | MTR_4g019790 | 31.390 | 223 | 115 | 3 | 5 | 194 | 7 | 224 | 6.65e-27 | 102 |
| MS.gene58532.t1 | MTR_1g090070 | 31.556 | 225 | 115 | 7 | 5 | 194 | 9 | 229 | 1.41e-26 | 101 |
| MS.gene58532.t1 | MTR_7g065750 | 31.034 | 232 | 115 | 6 | 1 | 194 | 1 | 225 | 1.01e-25 | 99.4 |
| MS.gene58532.t1 | MTR_7g065260 | 31.718 | 227 | 108 | 8 | 5 | 193 | 14 | 231 | 1.04e-24 | 97.1 |
| MS.gene58532.t1 | MTR_7g065710 | 29.665 | 209 | 99 | 5 | 6 | 178 | 5 | 201 | 1.59e-24 | 96.3 |
| MS.gene58532.t1 | MTR_1g090100 | 30.804 | 224 | 113 | 5 | 6 | 193 | 3 | 220 | 2.72e-24 | 95.5 |
| MS.gene58532.t1 | MTR_1g090060 | 29.911 | 224 | 115 | 5 | 5 | 192 | 3 | 220 | 1.68e-23 | 93.6 |
| MS.gene58532.t1 | MTR_1g090090 | 29.515 | 227 | 112 | 6 | 5 | 192 | 3 | 220 | 1.73e-23 | 93.6 |
| MS.gene58532.t1 | MTR_7g065640 | 27.586 | 232 | 104 | 6 | 1 | 194 | 1 | 206 | 3.22e-23 | 92.4 |
| MS.gene58532.t1 | MTR_3g099757 | 30.870 | 230 | 115 | 5 | 1 | 194 | 1 | 222 | 4.98e-23 | 92.4 |
| MS.gene58532.t1 | MTR_8g087410 | 28.767 | 219 | 112 | 5 | 1 | 183 | 2 | 212 | 1.98e-22 | 90.9 |
| MS.gene58532.t1 | MTR_7g065680 | 29.204 | 226 | 118 | 6 | 2 | 194 | 4 | 220 | 3.40e-22 | 90.1 |
| MS.gene58532.t1 | MTR_6g080440 | 27.511 | 229 | 119 | 5 | 4 | 193 | 2 | 222 | 8.94e-22 | 89.0 |
| MS.gene58532.t1 | MTR_4g019780 | 30.415 | 217 | 107 | 6 | 5 | 185 | 8 | 216 | 1.01e-21 | 88.6 |
| MS.gene58532.t1 | MTR_7g065700 | 29.167 | 216 | 111 | 5 | 2 | 184 | 4 | 210 | 2.47e-21 | 87.8 |
| MS.gene58532.t1 | MTR_8g087425 | 28.899 | 218 | 111 | 5 | 1 | 182 | 1 | 210 | 3.85e-21 | 87.4 |
| MS.gene58532.t1 | MTR_1g115195 | 29.439 | 214 | 106 | 5 | 5 | 180 | 3 | 209 | 6.01e-21 | 86.7 |
| MS.gene58532.t1 | MTR_4g059730 | 28.571 | 224 | 118 | 6 | 2 | 189 | 1 | 218 | 1.78e-20 | 85.5 |
| MS.gene58532.t1 | MTR_5g040430 | 28.378 | 222 | 119 | 5 | 3 | 187 | 5 | 223 | 6.05e-20 | 84.3 |
| MS.gene58532.t1 | MTR_2g070180 | 30.288 | 208 | 100 | 6 | 8 | 179 | 7 | 205 | 7.03e-19 | 81.3 |
| MS.gene58532.t1 | MTR_2g070210 | 30.732 | 205 | 99 | 6 | 14 | 182 | 13 | 210 | 7.73e-19 | 81.3 |
| MS.gene58532.t1 | MTR_2g070200 | 26.786 | 224 | 123 | 6 | 2 | 190 | 1 | 218 | 1.26e-18 | 80.5 |
| MS.gene58532.t1 | MTR_2g070150 | 28.638 | 213 | 107 | 6 | 2 | 178 | 1 | 204 | 2.75e-18 | 79.3 |
| MS.gene58532.t1 | MTR_3g467420 | 30.000 | 210 | 106 | 5 | 14 | 189 | 18 | 220 | 5.37e-18 | 79.0 |
| MS.gene58532.t1 | MTR_3g467430 | 30.047 | 213 | 102 | 7 | 14 | 189 | 18 | 220 | 3.98e-17 | 76.6 |
| MS.gene58532.t1 | MTR_2g070140 | 32.394 | 142 | 87 | 5 | 41 | 182 | 60 | 192 | 7.40e-16 | 72.8 |
| MS.gene58532.t1 | MTR_2g070060 | 25.806 | 217 | 116 | 5 | 2 | 182 | 1 | 208 | 3.04e-15 | 71.6 |
| MS.gene58532.t1 | MTR_2g070070 | 28.241 | 216 | 114 | 5 | 2 | 183 | 1 | 209 | 3.44e-15 | 71.2 |
| MS.gene58532.t1 | MTR_1g090150 | 28.761 | 226 | 118 | 7 | 5 | 194 | 3 | 221 | 3.71e-15 | 71.2 |
| MS.gene58532.t1 | MTR_2g070120 | 29.268 | 205 | 100 | 7 | 14 | 182 | 13 | 208 | 4.83e-15 | 70.9 |
| MS.gene58532.t1 | MTR_2g070130 | 29.245 | 212 | 109 | 7 | 2 | 179 | 1 | 205 | 7.83e-15 | 70.5 |
| MS.gene58532.t1 | MTR_2g070110 | 26.009 | 223 | 109 | 6 | 2 | 183 | 1 | 208 | 8.04e-14 | 67.8 |
| MS.gene58532.t1 | MTR_5g037390 | 45.946 | 74 | 4 | 1 | 29 | 66 | 11 | 84 | 2.94e-12 | 60.8 |
| MS.gene58532.t1 | MTR_8g056940 | 25.778 | 225 | 122 | 6 | 2 | 190 | 1 | 216 | 1.30e-11 | 61.6 |
| MS.gene58532.t1 | MTR_4g124130 | 24.107 | 224 | 128 | 7 | 2 | 190 | 1 | 217 | 2.36e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58532.t1 | AT1G10370 | 45.455 | 220 | 83 | 2 | 1 | 184 | 1 | 219 | 3.44e-57 | 180 |
| MS.gene58532.t1 | AT1G10360 | 43.421 | 228 | 92 | 3 | 1 | 192 | 1 | 227 | 7.71e-56 | 176 |
| MS.gene58532.t1 | AT1G59700 | 37.991 | 229 | 104 | 4 | 5 | 196 | 6 | 233 | 5.17e-48 | 157 |
| MS.gene58532.t1 | AT1G59670 | 38.565 | 223 | 97 | 3 | 5 | 189 | 6 | 226 | 4.38e-47 | 154 |
| MS.gene58532.t1 | AT1G69930 | 39.906 | 213 | 94 | 2 | 6 | 184 | 13 | 225 | 7.16e-44 | 146 |
| MS.gene58532.t1 | AT1G27130 | 38.462 | 221 | 99 | 3 | 1 | 184 | 1 | 221 | 1.94e-41 | 140 |
| MS.gene58532.t1 | AT1G27140 | 33.772 | 228 | 109 | 4 | 1 | 188 | 1 | 226 | 1.74e-36 | 127 |
| MS.gene58532.t1 | AT1G69920 | 32.558 | 215 | 109 | 2 | 6 | 184 | 35 | 249 | 2.06e-31 | 115 |
| MS.gene58532.t1 | AT2G29420 | 26.244 | 221 | 125 | 5 | 3 | 190 | 7 | 222 | 1.51e-22 | 91.3 |
| MS.gene58532.t1 | AT3G09270 | 29.358 | 218 | 114 | 4 | 4 | 186 | 5 | 217 | 8.24e-22 | 89.0 |
| MS.gene58532.t1 | AT2G29490 | 29.302 | 215 | 107 | 6 | 4 | 181 | 6 | 212 | 1.82e-19 | 82.8 |
| MS.gene58532.t1 | AT2G29470 | 27.434 | 226 | 116 | 7 | 6 | 192 | 8 | 224 | 2.04e-18 | 80.1 |
| MS.gene58532.t1 | AT1G78340 | 28.502 | 207 | 101 | 6 | 14 | 183 | 13 | 209 | 6.12e-17 | 76.3 |
| MS.gene58532.t1 | AT2G29460 | 27.111 | 225 | 117 | 7 | 4 | 190 | 6 | 221 | 1.21e-16 | 75.5 |
| MS.gene58532.t1 | AT1G78380 | 26.786 | 224 | 123 | 6 | 2 | 191 | 1 | 217 | 3.26e-16 | 74.3 |
| MS.gene58532.t1 | AT1G17180 | 28.910 | 211 | 109 | 7 | 14 | 190 | 13 | 216 | 3.66e-16 | 73.9 |
| MS.gene58532.t1 | AT1G78320 | 29.947 | 187 | 115 | 6 | 2 | 180 | 1 | 179 | 1.52e-15 | 72.0 |
| MS.gene58532.t1 | AT1G78320 | 35.115 | 131 | 76 | 4 | 51 | 180 | 84 | 206 | 3.07e-15 | 71.6 |
| MS.gene58532.t1 | AT1G17190 | 26.941 | 219 | 113 | 6 | 1 | 182 | 1 | 209 | 6.57e-15 | 70.5 |
| MS.gene58532.t1 | AT1G17170 | 28.372 | 215 | 112 | 6 | 2 | 182 | 1 | 207 | 1.17e-14 | 70.1 |
| MS.gene58532.t1 | AT1G78370 | 24.510 | 204 | 113 | 4 | 14 | 183 | 13 | 209 | 1.11e-13 | 67.4 |
| MS.gene58532.t1 | AT1G78360 | 28.571 | 210 | 108 | 6 | 8 | 182 | 7 | 209 | 1.23e-13 | 67.4 |
| MS.gene58532.t1 | AT5G62480 | 24.242 | 198 | 138 | 3 | 2 | 188 | 5 | 201 | 1.77e-13 | 66.6 |
| MS.gene58532.t1 | AT2G29440 | 25.110 | 227 | 123 | 6 | 5 | 193 | 6 | 223 | 3.84e-13 | 65.9 |
| MS.gene58532.t1 | AT5G62480 | 23.214 | 224 | 135 | 3 | 2 | 188 | 5 | 228 | 4.17e-13 | 66.2 |
| MS.gene58532.t1 | AT3G43800 | 24.667 | 150 | 105 | 3 | 33 | 181 | 70 | 212 | 4.66e-13 | 65.9 |
| MS.gene58532.t1 | AT5G62480 | 24.623 | 199 | 137 | 4 | 2 | 188 | 5 | 202 | 9.86e-13 | 64.7 |
Find 36 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAGCCATTGCGAAATTT+TGG | 0.144442 | 5.3:+25726490 | MS.gene58532:CDS |
| TCCACAAGTTTATCAGTTTC+TGG | 0.176738 | 5.3:-25727473 | None:intergenic |
| GGATTTATTGATATTGCTTT+TGG | 0.293768 | 5.3:+25727320 | MS.gene58532:CDS |
| TACAAATGACTTGAAGCTTT+TGG | 0.301427 | 5.3:+25726216 | MS.gene58532:CDS |
| AATCCAATCCTTTGATGTTA+AGG | 0.308526 | 5.3:-25726279 | None:intergenic |
| AGACTCCAGCTTTGGTGAAA+TGG | 0.311703 | 5.3:+25727408 | MS.gene58532:CDS |
| GACTCCAGCTTTGGTGAAAT+GGG | 0.333466 | 5.3:+25727409 | MS.gene58532:CDS |
| ATCCAATCCTTTGATGTTAA+GGG | 0.362609 | 5.3:-25726278 | None:intergenic |
| TGCCCTTAACATCAAAGGAT+TGG | 0.392813 | 5.3:+25726276 | MS.gene58532:CDS |
| TGCTGCTCATCCTGCTGTGA+AGG | 0.400653 | 5.3:+25727442 | MS.gene58532:CDS |
| GAAACATTTCTCAATTACTT+TGG | 0.417948 | 5.3:-25727536 | None:intergenic |
| GCATTTGAAGGAAGGATTGA+GGG | 0.436773 | 5.3:-25726462 | None:intergenic |
| TGGTATAATTCCTCACGAAA+TGG | 0.444598 | 5.3:+25727170 | MS.gene58532:CDS |
| TCAGCCCATTTCACCAAAGC+TGG | 0.450590 | 5.3:-25727413 | None:intergenic |
| GGAAGAAGTGCTTGTGAGGT+TGG | 0.452537 | 5.3:+25727241 | MS.gene58532:CDS |
| TGAAACAAAGACTCCAGCTT+TGG | 0.477233 | 5.3:+25727400 | MS.gene58532:CDS |
| TAAACTTGTGGAGTTTGCTA+AGG | 0.485321 | 5.3:+25727484 | MS.gene58532:CDS |
| ATGCTATTTGAGTTGGTTGA+GGG | 0.508086 | 5.3:+25727343 | MS.gene58532:CDS |
| AAATACCTTGTCATCGATGT+AGG | 0.509669 | 5.3:-25726517 | None:intergenic |
| AGCATTTGAAGGAAGGATTG+AGG | 0.510266 | 5.3:-25726463 | None:intergenic |
| AAAATTGCCCTTAACATCAA+AGG | 0.511770 | 5.3:+25726271 | MS.gene58532:CDS |
| GCTGCTCATCCTGCTGTGAA+GGG | 0.520880 | 5.3:+25727443 | MS.gene58532:CDS |
| GATGCTATTTGAGTTGGTTG+AGG | 0.524959 | 5.3:+25727342 | MS.gene58532:CDS |
| GCTCGATCATAAGCATTTGA+AGG | 0.528885 | 5.3:-25726474 | None:intergenic |
| GATCATAAGCATTTGAAGGA+AGG | 0.533721 | 5.3:-25726470 | None:intergenic |
| AAACTTGTGGAGTTTGCTAA+GGG | 0.551366 | 5.3:+25727485 | MS.gene58532:CDS |
| GGTAGAACTCCCTTCACAGC+AGG | 0.557376 | 5.3:-25727452 | None:intergenic |
| ACCAGAAACTGATAAACTTG+TGG | 0.558982 | 5.3:+25727472 | MS.gene58532:CDS |
| TAAAGATGACGAGTCAAAGA+AGG | 0.577368 | 5.3:+25727202 | MS.gene58532:CDS |
| GTGATCAACAAGTATAGTGA+AGG | 0.581995 | 5.3:+25727269 | MS.gene58532:CDS |
| CTTAATACAAATGGACTGAA+CGG | 0.585122 | 5.3:-25726244 | None:intergenic |
| AGGGTCACAGAGAAAATGAC+AGG | 0.585298 | 5.3:+25727362 | MS.gene58532:CDS |
| AGCAATCAAACCATTTCGTG+AGG | 0.586616 | 5.3:-25727180 | None:intergenic |
| GGCAACCCAAAATTTCGCAA+TGG | 0.635242 | 5.3:-25726496 | None:intergenic |
| AAATGGAAGAAGTGCTTGTG+AGG | 0.640532 | 5.3:+25727237 | MS.gene58532:CDS |
| GGTTGCCTACATCGATGACA+AGG | 0.651864 | 5.3:+25726512 | MS.gene58532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTACTCAAAAACA+TGG | - | chr5.3:25726601-25726620 | None:intergenic | 15.0% |
| !!! | ATTTTTACTCTTAATACAAA+TGG | - | chr5.3:25726256-25726275 | None:intergenic | 15.0% |
| !! | ACAAACACTATATATTCATA+CGG | - | chr5.3:25727035-25727054 | None:intergenic | 20.0% |
| !! | ATATGAATATCTCATATACT+TGG | - | chr5.3:25727092-25727111 | None:intergenic | 20.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | + | chr5.3:25726424-25726443 | MS.gene58532:intron | 20.0% |
| !!! | AATTTTTTTGTATACAGGAT+TGG | - | chr5.3:25726356-25726375 | None:intergenic | 20.0% |
| !!! | ATATTGTTTGTCATTGTTTT+TGG | + | chr5.3:25727129-25727148 | MS.gene58532:intron | 20.0% |
| ! | ACAAAAATCATATACCATGT+TGG | + | chr5.3:25726664-25726683 | MS.gene58532:intron | 25.0% |
| ! | GATGAAGTTTGGAAAAATAA+TGG | + | chr5.3:25726435-25726454 | MS.gene58532:intron | 25.0% |
| ! | TAAAAAAACATTGGCATTGT+GGG | - | chr5.3:25726719-25726738 | None:intergenic | 25.0% |
| ! | TGTCCTGATTAAAAAAACAT+TGG | - | chr5.3:25726728-25726747 | None:intergenic | 25.0% |
| ! | TTAAAAAAACATTGGCATTG+TGG | - | chr5.3:25726720-25726739 | None:intergenic | 25.0% |
| !! | GGATTTATTGATATTGCTTT+TGG | + | chr5.3:25727320-25727339 | MS.gene58532:CDS | 25.0% |
| !!! | AAGACTTTCTTGTTTTACTA+CGG | - | chr5.3:25726945-25726964 | None:intergenic | 25.0% |
| !!! | ACTGGAATTTTTTTGTATAC+AGG | - | chr5.3:25726361-25726380 | None:intergenic | 25.0% |
| !!! | ATGCCAATGTTTTTTTAATC+AGG | + | chr5.3:25726722-25726741 | MS.gene58532:intron | 25.0% |
| AAAAAAACATTGGCATTGTG+GGG | - | chr5.3:25726718-25726737 | None:intergenic | 30.0% | |
| AAAATTCCAGTTCTCATTCA+TGG | + | chr5.3:25726370-25726389 | MS.gene58532:intron | 30.0% | |
| AAAATTGCCCTTAACATCAA+AGG | + | chr5.3:25726271-25726290 | MS.gene58532:CDS | 30.0% | |
| AATCCAATCCTTTGATGTTA+AGG | - | chr5.3:25726282-25726301 | None:intergenic | 30.0% | |
| ATCCAATCCTTTGATGTTAA+GGG | - | chr5.3:25726281-25726300 | None:intergenic | 30.0% | |
| CTATTATTGCTGATCACAAA+TGG | - | chr5.3:25726404-25726423 | None:intergenic | 30.0% | |
| GACAAACAATATGATTCAGT+AGG | - | chr5.3:25727121-25727140 | None:intergenic | 30.0% | |
| TATACACATAGTTGCTAACA+TGG | + | chr5.3:25726833-25726852 | MS.gene58532:intron | 30.0% | |
| TGTTAGCAACTATGTGTATA+TGG | - | chr5.3:25726833-25726852 | None:intergenic | 30.0% | |
| TTTGTTTCGATAGTGATGTT+TGG | - | chr5.3:25726649-25726668 | None:intergenic | 30.0% | |
| ! | ACAAATGACTTGAAGCTTTT+GGG | + | chr5.3:25726217-25726236 | MS.gene58532:CDS | 30.0% |
| ! | TACAAATGACTTGAAGCTTT+TGG | + | chr5.3:25726216-25726235 | MS.gene58532:CDS | 30.0% |
| !! | CTTAATACAAATGGACTGAA+CGG | - | chr5.3:25726247-25726266 | None:intergenic | 30.0% |
| !!! | AGTGAAGGAAATGTCTTTTT+TGG | + | chr5.3:25727284-25727303 | MS.gene58532:CDS | 30.0% |
| !!! | CATTGTTTTTGGTTTCGATT+GGG | + | chr5.3:25727140-25727159 | MS.gene58532:intron | 30.0% |
| !!! | TCATTGTTTTTGGTTTCGAT+TGG | + | chr5.3:25727139-25727158 | MS.gene58532:intron | 30.0% |
| AAATACCTTGTCATCGATGT+AGG | - | chr5.3:25726520-25726539 | None:intergenic | 35.0% | |
| ACCAGAAACTGATAAACTTG+TGG | + | chr5.3:25727472-25727491 | MS.gene58532:CDS | 35.0% | |
| ATTGTTTAGGTCATTTGGAC+TGG | - | chr5.3:25726972-25726991 | None:intergenic | 35.0% | |
| CAACTATGTGTATATGGACT+CGG | - | chr5.3:25726827-25726846 | None:intergenic | 35.0% | |
| CATCATATCTCTAACCAACA+TGG | - | chr5.3:25726681-25726700 | None:intergenic | 35.0% | |
| GATCATAAGCATTTGAAGGA+AGG | - | chr5.3:25726473-25726492 | None:intergenic | 35.0% | |
| GTGATCAACAAGTATAGTGA+AGG | + | chr5.3:25727269-25727288 | MS.gene58532:CDS | 35.0% | |
| TAAAGATGACGAGTCAAAGA+AGG | + | chr5.3:25727202-25727221 | MS.gene58532:CDS | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | - | chr5.3:25727476-25727495 | None:intergenic | 35.0% | |
| TGGTATAATTCCTCACGAAA+TGG | + | chr5.3:25727170-25727189 | MS.gene58532:CDS | 35.0% | |
| TTATCTCCATGAATGAGAAC+TGG | - | chr5.3:25726379-25726398 | None:intergenic | 35.0% | |
| ! | CATGTTGGTTAGAGATATGA+TGG | + | chr5.3:25726679-25726698 | MS.gene58532:intron | 35.0% |
| ! | TTTTTACAAAGCTCAGCCAT+GGG | + | chr5.3:25726794-25726813 | MS.gene58532:intron | 35.0% |
| !! | AAACTTGTGGAGTTTGCTAA+GGG | + | chr5.3:25727485-25727504 | MS.gene58532:CDS | 35.0% |
| !! | ATGCTATTTGAGTTGGTTGA+GGG | + | chr5.3:25727343-25727362 | MS.gene58532:CDS | 35.0% |
| !! | CTTTTGGATGCTATTTGAGT+TGG | + | chr5.3:25727336-25727355 | MS.gene58532:CDS | 35.0% |
| !! | GAAGGCATATTTTGAGCAAA+TGG | + | chr5.3:25727220-25727239 | MS.gene58532:CDS | 35.0% |
| !! | TAAACTTGTGGAGTTTGCTA+AGG | + | chr5.3:25727484-25727503 | MS.gene58532:CDS | 35.0% |
| !! | TAAGGGTTTTGTGCAAAGAA+TGG | + | chr5.3:25727502-25727521 | MS.gene58532:CDS | 35.0% |
| !!! | CTTTCTTGTTTTACTACGGT+TGG | - | chr5.3:25726941-25726960 | None:intergenic | 35.0% |
| !!! | GAAGGAAATGTCTTTTTTGG+AGG | + | chr5.3:25727287-25727306 | MS.gene58532:CDS | 35.0% |
| !!! | TGAAGAAGCAAGTCACTTTT+GGG | - | chr5.3:25726331-25726350 | None:intergenic | 35.0% |
| !!! | TTTTTTACAAAGCTCAGCCA+TGG | + | chr5.3:25726793-25726812 | MS.gene58532:intron | 35.0% |
| !!! | TTTTTTGGAGGAGAGAAGAT+TGG | + | chr5.3:25727299-25727318 | MS.gene58532:CDS | 35.0% |
| AGCAATCAAACCATTTCGTG+AGG | - | chr5.3:25727183-25727202 | None:intergenic | 40.0% | |
| AGCATTTGAAGGAAGGATTG+AGG | - | chr5.3:25726466-25726485 | None:intergenic | 40.0% | |
| CGCACATTGTTTAGGTCATT+TGG | - | chr5.3:25726977-25726996 | None:intergenic | 40.0% | |
| CGGTTGGACTACTCTTTAAA+TGG | - | chr5.3:25726925-25726944 | None:intergenic | 40.0% | |
| GCATTTGAAGGAAGGATTGA+GGG | - | chr5.3:25726465-25726484 | None:intergenic | 40.0% | |
| GCTCGATCATAAGCATTTGA+AGG | - | chr5.3:25726477-25726496 | None:intergenic | 40.0% | |
| TGAAACAAAGACTCCAGCTT+TGG | + | chr5.3:25727400-25727419 | MS.gene58532:CDS | 40.0% | |
| TGCCCTTAACATCAAAGGAT+TGG | + | chr5.3:25726276-25726295 | MS.gene58532:CDS | 40.0% | |
| ! | ATCGAGCCATTGCGAAATTT+TGG | + | chr5.3:25726490-25726509 | MS.gene58532:CDS | 40.0% |
| ! | TCGAGCCATTGCGAAATTTT+GGG | + | chr5.3:25726491-25726510 | MS.gene58532:CDS | 40.0% |
| !! | AAATGGAAGAAGTGCTTGTG+AGG | + | chr5.3:25727237-25727256 | MS.gene58532:CDS | 40.0% |
| !! | CTGAAGAAGCAAGTCACTTT+TGG | - | chr5.3:25726332-25726351 | None:intergenic | 40.0% |
| !! | GATGCTATTTGAGTTGGTTG+AGG | + | chr5.3:25727342-25727361 | MS.gene58532:CDS | 40.0% |
| !!! | CAAGTCACTTTTGGGATTCA+TGG | - | chr5.3:25726323-25726342 | None:intergenic | 40.0% |
| AGGGTCACAGAGAAAATGAC+AGG | + | chr5.3:25727362-25727381 | MS.gene58532:CDS | 45.0% | |
| CACACACACGCACATTGTTT+AGG | - | chr5.3:25726985-25727004 | None:intergenic | 45.0% | |
| GGCAACCCAAAATTTCGCAA+TGG | - | chr5.3:25726499-25726518 | None:intergenic | 45.0% | |
| ! | AGACTCCAGCTTTGGTGAAA+TGG | + | chr5.3:25727408-25727427 | MS.gene58532:CDS | 45.0% |
| ! | GACTCCAGCTTTGGTGAAAT+GGG | + | chr5.3:25727409-25727428 | MS.gene58532:CDS | 45.0% |
| !!! | AATAAAATCAAATTTTATAA+AGG | - | chr5.3:25726573-25726592 | None:intergenic | 5.0% |
| GGTTGCCTACATCGATGACA+AGG | + | chr5.3:25726512-25726531 | MS.gene58532:CDS | 50.0% | |
| GGTTTCGATTGGGAGAGTAG+TGG | + | chr5.3:25727150-25727169 | MS.gene58532:intron | 50.0% | |
| TCAGCCCATTTCACCAAAGC+TGG | - | chr5.3:25727416-25727435 | None:intergenic | 50.0% | |
| !! | GGAAGAAGTGCTTGTGAGGT+TGG | + | chr5.3:25727241-25727260 | MS.gene58532:CDS | 50.0% |
| GCTGCTCATCCTGCTGTGAA+GGG | + | chr5.3:25727443-25727462 | MS.gene58532:CDS | 55.0% | |
| GGTAGAACTCCCTTCACAGC+AGG | - | chr5.3:25727455-25727474 | None:intergenic | 55.0% | |
| TGCTGCTCATCCTGCTGTGA+AGG | + | chr5.3:25727442-25727461 | MS.gene58532:CDS | 55.0% | |
| TGGACTCGGATTCTCTCCCA+TGG | - | chr5.3:25726813-25726832 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 25726211 | 25727544 | 25726211 | ID=MS.gene58532 |
| chr5.3 | mRNA | 25726211 | 25727544 | 25726211 | ID=MS.gene58532.t1;Parent=MS.gene58532 |
| chr5.3 | exon | 25726211 | 25726334 | 25726211 | ID=MS.gene58532.t1.exon1;Parent=MS.gene58532.t1 |
| chr5.3 | CDS | 25726211 | 25726334 | 25726211 | ID=cds.MS.gene58532.t1;Parent=MS.gene58532.t1 |
| chr5.3 | exon | 25726442 | 25726533 | 25726442 | ID=MS.gene58532.t1.exon2;Parent=MS.gene58532.t1 |
| chr5.3 | CDS | 25726442 | 25726533 | 25726442 | ID=cds.MS.gene58532.t1;Parent=MS.gene58532.t1 |
| chr5.3 | exon | 25727170 | 25727544 | 25727170 | ID=MS.gene58532.t1.exon3;Parent=MS.gene58532.t1 |
| chr5.3 | CDS | 25727170 | 25727544 | 25727170 | ID=cds.MS.gene58532.t1;Parent=MS.gene58532.t1 |
| Gene Sequence |
| Protein sequence |
