Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59051.t1 | RHN63924.1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 1.10E-105 | 392.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59051.t1 | A0A396IHY1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 8.2e-106 | 392.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050384 | MS.gene59051 | 0.806217 | 9.16E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene59051 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene59051 | 0.803427 | 3.50E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene59051 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene59051 | 0.805288 | 1.43E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene59051 | 0.801834 | 7.47E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene59051 | 0.838535 | 2.71E-57 | -1.69E-46 |
| MS.gene051365 | MS.gene59051 | 0.802858 | 4.60E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene59051 | 0.802374 | 5.78E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene59051 | 0.814782 | 1.29E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene59051 | 0.816221 | 6.18E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene59051 | 0.805565 | 1.26E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene59051 | 0.81234 | 4.45E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene59051 | 0.803719 | 3.05E-49 | -1.69E-46 |
| MS.gene058976 | MS.gene59051 | 0.814516 | 1.48E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene59051 | 0.819001 | 1.46E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59051.t1 | MTR_4g114105 | 96.703 | 182 | 6 | 0 | 13 | 194 | 1 | 182 | 2.71e-131 | 366 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59051.t1 | AT5G20120 | 63.736 | 182 | 60 | 2 | 13 | 194 | 13 | 188 | 3.51e-70 | 211 |
| MS.gene59051.t1 | AT5G20120 | 63.736 | 182 | 60 | 2 | 13 | 194 | 13 | 188 | 3.51e-70 | 211 |
Find 45 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGCTTTGTGGCCAATT+TGG | 0.157438 | 8.4:-13856145 | MS.gene59051:CDS |
| TTTCTTGACGATTCCTCTTC+TGG | 0.249847 | 8.4:-13856120 | MS.gene59051:intron |
| CTAGGTTCACCTTTGCTTTG+TGG | 0.328652 | 8.4:-13856154 | MS.gene59051:intron |
| GCACAGGAGATATATGAAAT+TGG | 0.329409 | 8.4:+13857465 | None:intergenic |
| TGCCTCCGAGTCCTCCTAAA+AGG | 0.336735 | 8.4:-13857564 | MS.gene59051:CDS |
| ATCAGTTGCATTGCAATGTC+TGG | 0.343120 | 8.4:-13857697 | None:intergenic |
| TGTGCAGTTTACACTATTCA+TGG | 0.346494 | 8.4:-13855996 | MS.gene59051:intron |
| CCTCTATATCTTGGGATGAT+AGG | 0.347964 | 8.4:-13856420 | MS.gene59051:CDS |
| TGCAGACTGCCTCTATATCT+TGG | 0.356363 | 8.4:-13856429 | MS.gene59051:intron |
| TTGCCATTCGCCACTGGATT+CGG | 0.365198 | 8.4:-13856285 | MS.gene59051:CDS |
| GGAACACCGGTTGGGGCAGG+TGG | 0.367107 | 8.4:-13857673 | MS.gene59051:CDS |
| TTTCATTTATACAAGTATCT+TGG | 0.379944 | 8.4:-13856376 | MS.gene59051:CDS |
| TATCTTGGGATGATAGGTAT+TGG | 0.427837 | 8.4:-13856414 | MS.gene59051:CDS |
| AATGAGGCAGAGACATAGCC+AGG | 0.433939 | 8.4:-13857647 | MS.gene59051:CDS |
| GTTTGTTTCTTACAAGCAAA+AGG | 0.450655 | 8.4:+13856254 | None:intergenic |
| ATCGTCAAGAAACTCCAAAT+TGG | 0.465863 | 8.4:+13856131 | None:intergenic |
| TTTATACAAGTATCTTGGCT+TGG | 0.469511 | 8.4:-13856371 | MS.gene59051:CDS |
| GCAGACTGCCTCTATATCTT+GGG | 0.469604 | 8.4:-13856428 | MS.gene59051:intron |
| AAAATGGGGATTAAAGAAAT+GGG | 0.471320 | 8.4:-13856328 | MS.gene59051:CDS |
| ATTAAACCACCTGCCCCAAC+CGG | 0.474646 | 8.4:+13857667 | None:intergenic |
| CCTATCATCCCAAGATATAG+AGG | 0.476285 | 8.4:+13856420 | None:intergenic |
| TGCTAGTAGTGGTGATGACT+TGG | 0.501772 | 8.4:-13857620 | MS.gene59051:CDS |
| GCCATGACGATCGTATTAGA+AGG | 0.509433 | 8.4:-13857444 | MS.gene59051:intron |
| TCAGTTGCATTGCAATGTCT+GGG | 0.511639 | 8.4:-13857696 | None:intergenic |
| ACAGTGTTGCCATTCGCCAC+TGG | 0.512752 | 8.4:-13856291 | MS.gene59051:CDS |
| TTGGGGCAGGTGGTTTAATG+AGG | 0.517419 | 8.4:-13857663 | MS.gene59051:CDS |
| CGAGTCCTCCTAAAAGGACA+TGG | 0.538660 | 8.4:-13857558 | MS.gene59051:CDS |
| TCTTGGCTTGGAGCGTTCGA+AGG | 0.539897 | 8.4:-13856359 | MS.gene59051:CDS |
| TAATACGATCGTCATGGCAC+AGG | 0.555324 | 8.4:+13857449 | None:intergenic |
| GGAATTCATCATTCTGAGGC+CGG | 0.559074 | 8.4:+13855930 | None:intergenic |
| TACACTATTCATGGCATGCA+TGG | 0.561683 | 8.4:-13855987 | MS.gene59051:CDS |
| TTGTTGATACATACCAGAAG+AGG | 0.562376 | 8.4:+13856107 | None:intergenic |
| TGGAAGACGATGCATGTTCG+AGG | 0.564813 | 8.4:-13857600 | MS.gene59051:CDS |
| ATTCCGAATCCAGTGGCGAA+TGG | 0.603263 | 8.4:+13856282 | None:intergenic |
| CCAAATTGGCCACAAAGCAA+AGG | 0.609872 | 8.4:+13856145 | None:intergenic |
| CAGTTGCATTGCAATGTCTG+GGG | 0.625521 | 8.4:-13857695 | None:intergenic |
| AGCCAGGGTTATGCTAGTAG+TGG | 0.628875 | 8.4:-13857631 | MS.gene59051:CDS |
| CACCACTACTAGCATAACCC+TGG | 0.638272 | 8.4:+13857629 | None:intergenic |
| AGTTGCATTGCAATGTCTGG+GGG | 0.643653 | 8.4:-13857694 | None:intergenic |
| ACCTTCTAATACGATCGTCA+TGG | 0.649054 | 8.4:+13857443 | None:intergenic |
| GTACGGAATTCATCATTCTG+AGG | 0.654930 | 8.4:+13855926 | None:intergenic |
| TGTTTCTTACAAGCAAAAGG+AGG | 0.657267 | 8.4:+13856257 | None:intergenic |
| ACTATTCATGGCATGCATGG+TGG | 0.676070 | 8.4:-13855984 | MS.gene59051:CDS |
| GGAGGTGATTCCGAATCCAG+TGG | 0.689356 | 8.4:+13856275 | None:intergenic |
| ATGAGGCAGAGACATAGCCA+GGG | 0.708201 | 8.4:-13857646 | MS.gene59051:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTACTTGTATTTATAAA+CGG | - | chr8.4:13856217-13856236 | MS.gene59051:intron | 10.0% |
| !! | ACGACAAAAATAAAATTAAA+GGG | - | chr8.4:13856492-13856511 | MS.gene59051:intron | 15.0% |
| !! | AAATTTAGAGGAAAAATAAC+AGG | + | chr8.4:13856691-13856710 | None:intergenic | 20.0% |
| !! | AAGTAATAAAACATAGTAAG+CGG | + | chr8.4:13857530-13857549 | None:intergenic | 20.0% |
| !! | AATTTAGAGGAAAAATAACA+GGG | + | chr8.4:13856690-13856709 | None:intergenic | 20.0% |
| !! | CACGACAAAAATAAAATTAA+AGG | - | chr8.4:13856491-13856510 | MS.gene59051:intron | 20.0% |
| !! | TACTTATATAATAGGAAAGA+GGG | + | chr8.4:13856986-13857005 | None:intergenic | 20.0% |
| !! | TTTCATTTATACAAGTATCT+TGG | - | chr8.4:13857225-13857244 | MS.gene59051:intron | 20.0% |
| !!! | GTTATCACAATTTCAATTTT+TGG | + | chr8.4:13857566-13857585 | None:intergenic | 20.0% |
| !!! | TATGAACTGATTTTATGTTT+AGG | + | chr8.4:13856831-13856850 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTCCTCTAAATT+TGG | - | chr8.4:13856690-13856709 | MS.gene59051:intron | 20.0% |
| !!! | TGTTTAAAATCCAAATTTAG+AGG | + | chr8.4:13856703-13856722 | None:intergenic | 20.0% |
| ! | AAAAATGGGGATTAAAGAAA+TGG | - | chr8.4:13857272-13857291 | MS.gene59051:intron | 25.0% |
| ! | AAAATGGGGATTAAAGAAAT+GGG | - | chr8.4:13857273-13857292 | MS.gene59051:intron | 25.0% |
| ! | AAGTTCACTTTAATGTGTAA+TGG | - | chr8.4:13856192-13856211 | MS.gene59051:intron | 25.0% |
| ! | ATCTTAAATTTCATCAAACC+GGG | + | chr8.4:13857009-13857028 | None:intergenic | 25.0% |
| ! | ATTACACATTAAAGTGAACT+TGG | + | chr8.4:13856193-13856212 | None:intergenic | 25.0% |
| ! | ATTTGTTTGTTTAGGTGTTT+AGG | - | chr8.4:13856314-13856333 | MS.gene59051:CDS | 25.0% |
| ! | CATCTTAAATTTCATCAAAC+CGG | + | chr8.4:13857010-13857029 | None:intergenic | 25.0% |
| ! | GATTATGAAAATTCCGATAT+TGG | + | chr8.4:13857136-13857155 | None:intergenic | 25.0% |
| ! | GTACTTATATAATAGGAAAG+AGG | + | chr8.4:13856987-13857006 | None:intergenic | 25.0% |
| ! | TGATTGGAAATGGAAATTAT+GGG | - | chr8.4:13856745-13856764 | MS.gene59051:intron | 25.0% |
| ! | TTAAGATAAACAGTATCCAA+CGG | - | chr8.4:13856925-13856944 | MS.gene59051:intron | 25.0% |
| ! | TTGATTGGAAATGGAAATTA+TGG | - | chr8.4:13856744-13856763 | MS.gene59051:intron | 25.0% |
| ! | TTTCCTATTATATAAGTACC+CGG | - | chr8.4:13856988-13857007 | MS.gene59051:intron | 25.0% |
| ! | TTTCTTTATTGTGCTAAAGA+TGG | - | chr8.4:13856283-13856302 | MS.gene59051:CDS | 25.0% |
| !!! | GCTGCTTTTATTTTATACTT+TGG | - | chr8.4:13856102-13856121 | MS.gene59051:intron | 25.0% |
| !!! | TAATCCCTTATCTCATTTTT+GGG | - | chr8.4:13857640-13857659 | MS.gene59051:CDS | 25.0% |
| AAACCGGGTACTTATATAAT+AGG | + | chr8.4:13856994-13857013 | None:intergenic | 30.0% | |
| AAATTTCGATATCGTCAAAC+AGG | + | chr8.4:13857045-13857064 | None:intergenic | 30.0% | |
| AACTCATATCTGATTAAACC+AGG | + | chr8.4:13856875-13856894 | None:intergenic | 30.0% | |
| ACTTGACTTCATACCAATAT+CGG | - | chr8.4:13857120-13857139 | MS.gene59051:intron | 30.0% | |
| AGAATCCCAAAAATGAGATA+AGG | + | chr8.4:13857648-13857667 | None:intergenic | 30.0% | |
| ATAACTCGACAAAAAACATC+AGG | - | chr8.4:13856552-13856571 | MS.gene59051:intron | 30.0% | |
| ATTTATTTCCACCATTTGCT+TGG | - | chr8.4:13856602-13856621 | MS.gene59051:intron | 30.0% | |
| ATTTCCATTTCCAATCAACA+AGG | + | chr8.4:13856742-13856761 | None:intergenic | 30.0% | |
| GAATCCCAAAAATGAGATAA+GGG | + | chr8.4:13857647-13857666 | None:intergenic | 30.0% | |
| TATATAATAGGAAAGAGGGA+AGG | + | chr8.4:13856982-13857001 | None:intergenic | 30.0% | |
| TCGAAGGTTTGATGAAAAAT+GGG | - | chr8.4:13857258-13857277 | MS.gene59051:intron | 30.0% | |
| TCTCGATGTTCATTTATTGA+TGG | - | chr8.4:13856258-13856277 | MS.gene59051:intron | 30.0% | |
| TTCAACTTATAAGTAACGCA+AGG | + | chr8.4:13856386-13856405 | None:intergenic | 30.0% | |
| TTCGAAGGTTTGATGAAAAA+TGG | - | chr8.4:13857257-13857276 | MS.gene59051:intron | 30.0% | |
| TTTATACAAGTATCTTGGCT+TGG | - | chr8.4:13857230-13857249 | MS.gene59051:intron | 30.0% | |
| TTTCCATTTCCAATCAACAA+GGG | + | chr8.4:13856741-13856760 | None:intergenic | 30.0% | |
| TTTGAAAAGCAACAAAACAC+TGG | + | chr8.4:13856635-13856654 | None:intergenic | 30.0% | |
| ! | GTAATCCCTTATCTCATTTT+TGG | - | chr8.4:13857639-13857658 | MS.gene59051:CDS | 30.0% |
| ! | GTTTGTTTCTTACAAGCAAA+AGG | + | chr8.4:13857350-13857369 | None:intergenic | 30.0% |
| ! | TAGCAGGAATTTGTTTGTTT+AGG | - | chr8.4:13856306-13856325 | MS.gene59051:CDS | 30.0% |
| !!! | TATCTCATTTTTGGGATTCT+TGG | - | chr8.4:13857648-13857667 | MS.gene59051:CDS | 30.0% |
| ATCGTCAAGAAACTCCAAAT+TGG | + | chr8.4:13857473-13857492 | None:intergenic | 35.0% | |
| ATTCACTTCAAAACATCCGT+TGG | + | chr8.4:13856944-13856963 | None:intergenic | 35.0% | |
| CGAAGGTTTGATGAAAAATG+GGG | - | chr8.4:13857259-13857278 | MS.gene59051:intron | 35.0% | |
| GCACAGGAGATATATGAAAT+TGG | + | chr8.4:13856139-13856158 | None:intergenic | 35.0% | |
| TATCTTGGGATGATAGGTAT+TGG | - | chr8.4:13857187-13857206 | MS.gene59051:intron | 35.0% | |
| TGTAAACTGCACAACATAAG+AGG | + | chr8.4:13857598-13857617 | None:intergenic | 35.0% | |
| TGTGCAGTTTACACTATTCA+TGG | - | chr8.4:13857605-13857624 | MS.gene59051:CDS | 35.0% | |
| TGTTTCTTACAAGCAAAAGG+AGG | + | chr8.4:13857347-13857366 | None:intergenic | 35.0% | |
| TTGTATTTATAAACGGCTGC+TGG | - | chr8.4:13856224-13856243 | MS.gene59051:intron | 35.0% | |
| TTGTTGATACATACCAGAAG+AGG | + | chr8.4:13857497-13857516 | None:intergenic | 35.0% | |
| ! | AGATGCTCGAGAATTTTCTT+TGG | - | chr8.4:13856070-13856089 | MS.gene59051:intron | 35.0% |
| ! | TTTTGCTTACTCCCTATCTT+TGG | - | chr8.4:13857419-13857438 | MS.gene59051:intron | 35.0% |
| !! | AACAAGGGCATCAATCAATA+AGG | + | chr8.4:13856726-13856745 | None:intergenic | 35.0% |
| !!! | ACGGATGTTTTGAAGTGAAT+CGG | - | chr8.4:13856944-13856963 | MS.gene59051:intron | 35.0% |
| AACCTAGAGATGCCAAAGAT+AGG | + | chr8.4:13857434-13857453 | None:intergenic | 40.0% | |
| ACCTAGAGATGCCAAAGATA+GGG | + | chr8.4:13857433-13857452 | None:intergenic | 40.0% | |
| ACCTTCTAATACGATCGTCA+TGG | + | chr8.4:13856161-13856180 | None:intergenic | 40.0% | |
| AGATAGGGAGTAAGCAAAAC+AGG | + | chr8.4:13857418-13857437 | None:intergenic | 40.0% | |
| ATTGTGCTAAAGATGGTAGC+AGG | - | chr8.4:13856290-13856309 | MS.gene59051:CDS | 40.0% | |
| CAAAACATGATGTCAGTTCC+TGG | - | chr8.4:13856854-13856873 | MS.gene59051:intron | 40.0% | |
| CCTATCATCCCAAGATATAG+AGG | + | chr8.4:13857184-13857203 | None:intergenic | 40.0% | |
| CCTCTATATCTTGGGATGAT+AGG | - | chr8.4:13857181-13857200 | MS.gene59051:intron | 40.0% | |
| CTCATCCTCTCCTTCATTAA+AGG | + | chr8.4:13856582-13856601 | None:intergenic | 40.0% | |
| CTGGAATTTCTCCAAGCAAA+TGG | + | chr8.4:13856616-13856635 | None:intergenic | 40.0% | |
| GAATTTCTCCAAGCAAATGG+TGG | + | chr8.4:13856613-13856632 | None:intergenic | 40.0% | |
| GATAGGGAGTAAGCAAAACA+GGG | + | chr8.4:13857417-13857436 | None:intergenic | 40.0% | |
| GCATTGCAAGTTATCAACGT+TGG | - | chr8.4:13856431-13856450 | MS.gene59051:intron | 40.0% | |
| GTACGGAATTCATCATTCTG+AGG | + | chr8.4:13857678-13857697 | None:intergenic | 40.0% | |
| TACACTATTCATGGCATGCA+TGG | - | chr8.4:13857614-13857633 | MS.gene59051:CDS | 40.0% | |
| TGATTGATGCCCTTGTTGAT+TGG | - | chr8.4:13856729-13856748 | MS.gene59051:intron | 40.0% | |
| TTGCAAGTTATCAACGTTGG+CGG | - | chr8.4:13856434-13856453 | MS.gene59051:intron | 40.0% | |
| TTTCTTGACGATTCCTCTTC+TGG | - | chr8.4:13857481-13857500 | MS.gene59051:CDS | 40.0% | |
| ! | ATCTCGATCCATGTCCTTTT+AGG | + | chr8.4:13856054-13856073 | None:intergenic | 40.0% |
| ! | ATGCCCTTGTTGATTGGAAA+TGG | - | chr8.4:13856735-13856754 | MS.gene59051:intron | 40.0% |
| !! | ACGTTGATAACTTGCAATGC+TGG | + | chr8.4:13856431-13856450 | None:intergenic | 40.0% |
| !! | CGTTGATAACTTGCAATGCT+GGG | + | chr8.4:13856430-13856449 | None:intergenic | 40.0% |
| !!! | TCATTTTTGGGATTCTTGGC+CGG | - | chr8.4:13857652-13857671 | MS.gene59051:CDS | 40.0% |
| ACTATTCATGGCATGCATGG+TGG | - | chr8.4:13857617-13857636 | MS.gene59051:CDS | 45.0% | |
| ATCAGGCCAGCCTTTAATGA+AGG | - | chr8.4:13856569-13856588 | MS.gene59051:intron | 45.0% | |
| CCAAATTGGCCACAAAGCAA+AGG | + | chr8.4:13857459-13857478 | None:intergenic | 45.0% | |
| CCTTTGCTTTGTGGCCAATT+TGG | - | chr8.4:13857456-13857475 | MS.gene59051:CDS | 45.0% | |
| CTAGGTTCACCTTTGCTTTG+TGG | - | chr8.4:13857447-13857466 | MS.gene59051:CDS | 45.0% | |
| GCAGACTGCCTCTATATCTT+GGG | - | chr8.4:13857173-13857192 | MS.gene59051:intron | 45.0% | |
| GCCATGACGATCGTATTAGA+AGG | - | chr8.4:13856157-13856176 | MS.gene59051:intron | 45.0% | |
| GGCAGTCTGCAATAGAACTA+AGG | + | chr8.4:13857163-13857182 | None:intergenic | 45.0% | |
| TAATACGATCGTCATGGCAC+AGG | + | chr8.4:13856155-13856174 | None:intergenic | 45.0% | |
| TCCCTATCTTTGGCATCTCT+AGG | - | chr8.4:13857429-13857448 | MS.gene59051:intron | 45.0% | |
| TCCTCTCCTTCATTAAAGGC+TGG | + | chr8.4:13856578-13856597 | None:intergenic | 45.0% | |
| TCGATATCGTCAAACAGGTG+CGG | + | chr8.4:13857040-13857059 | None:intergenic | 45.0% | |
| TGCAGACTGCCTCTATATCT+TGG | - | chr8.4:13857172-13857191 | MS.gene59051:intron | 45.0% | |
| ! | TCGATCCATGTCCTTTTAGG+AGG | + | chr8.4:13856051-13856070 | None:intergenic | 45.0% |
| ! | TGCTAGTAGTGGTGATGACT+TGG | - | chr8.4:13855981-13856000 | MS.gene59051:CDS | 45.0% |
| !! | CATGTCCTTTTAGGAGGACT+CGG | + | chr8.4:13856045-13856064 | None:intergenic | 45.0% |
| !! | GGAATTCATCATTCTGAGGC+CGG | + | chr8.4:13857674-13857693 | None:intergenic | 45.0% |
| AATGAGGCAGAGACATAGCC+AGG | - | chr8.4:13855954-13855973 | MS.gene59051:CDS | 50.0% | |
| AATGCTGGGAGCTTCACAGT+TGG | + | chr8.4:13856416-13856435 | None:intergenic | 50.0% | |
| AGCCAGGGTTATGCTAGTAG+TGG | - | chr8.4:13855970-13855989 | MS.gene59051:CDS | 50.0% | |
| ATAAGACCAGACCATGAGGC+AGG | - | chr8.4:13856770-13856789 | MS.gene59051:intron | 50.0% | |
| ATGAGGCAGAGACATAGCCA+GGG | - | chr8.4:13855955-13855974 | MS.gene59051:CDS | 50.0% | |
| ATTAAACCACCTGCCCCAAC+CGG | + | chr8.4:13855937-13855956 | None:intergenic | 50.0% | |
| ATTCCGAATCCAGTGGCGAA+TGG | + | chr8.4:13857322-13857341 | None:intergenic | 50.0% | |
| CACCACTACTAGCATAACCC+TGG | + | chr8.4:13855975-13855994 | None:intergenic | 50.0% | |
| CGAGTCCTCCTAAAAGGACA+TGG | - | chr8.4:13856043-13856062 | MS.gene59051:intron | 50.0% | |
| GCCAGCCTTTAATGAAGGAG+AGG | - | chr8.4:13856574-13856593 | MS.gene59051:intron | 50.0% | |
| GGTCATAAGACCAGACCATG+AGG | - | chr8.4:13856766-13856785 | MS.gene59051:intron | 50.0% | |
| TAAGACCAGACCATGAGGCA+GGG | - | chr8.4:13856771-13856790 | MS.gene59051:intron | 50.0% | |
| TGGAAGACGATGCATGTTCG+AGG | - | chr8.4:13856001-13856020 | MS.gene59051:intron | 50.0% | |
| TTGCCATTCGCCACTGGATT+CGG | - | chr8.4:13857316-13857335 | MS.gene59051:intron | 50.0% | |
| TTGGGGCAGGTGGTTTAATG+AGG | - | chr8.4:13855938-13855957 | MS.gene59051:CDS | 50.0% | |
| ACAGTGTTGCCATTCGCCAC+TGG | - | chr8.4:13857310-13857329 | MS.gene59051:intron | 55.0% | |
| GGAGGTGATTCCGAATCCAG+TGG | + | chr8.4:13857329-13857348 | None:intergenic | 55.0% | |
| TGCCTCCGAGTCCTCCTAAA+AGG | - | chr8.4:13856037-13856056 | MS.gene59051:intron | 55.0% | |
| !! | GTCCTTTTAGGAGGACTCGG+AGG | + | chr8.4:13856042-13856061 | None:intergenic | 55.0% |
| !! | TCTTGGCTTGGAGCGTTCGA+AGG | - | chr8.4:13857242-13857261 | MS.gene59051:intron | 55.0% |
| ATGTCTGGGGGAACACCGGT+TGG | - | chr8.4:13855919-13855938 | MS.gene59051:CDS | 60.0% | |
| ! | TGTCTGGGGGAACACCGGTT+GGG | - | chr8.4:13855920-13855939 | MS.gene59051:CDS | 60.0% |
| ACGTGCCCTGCCTCATGGTC+TGG | + | chr8.4:13856779-13856798 | None:intergenic | 65.0% | |
| TGCACACGTGCCCTGCCTCA+TGG | + | chr8.4:13856784-13856803 | None:intergenic | 65.0% | |
| ! | GTCTGGGGGAACACCGGTTG+GGG | - | chr8.4:13855921-13855940 | MS.gene59051:CDS | 65.0% |
| ! | GGAACACCGGTTGGGGCAGG+TGG | - | chr8.4:13855928-13855947 | MS.gene59051:CDS | 70.0% |
| ! | GGGGGAACACCGGTTGGGGC+AGG | - | chr8.4:13855925-13855944 | MS.gene59051:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 13855919 | 13857704 | 13855919 | ID=MS.gene59051 |
| chr8.4 | mRNA | 13855919 | 13857704 | 13855919 | ID=MS.gene59051.t1;Parent=MS.gene59051 |
| chr8.4 | exon | 13857445 | 13857704 | 13857445 | ID=MS.gene59051.t1.exon1;Parent=MS.gene59051.t1 |
| chr8.4 | CDS | 13857445 | 13857704 | 13857445 | ID=cds.MS.gene59051.t1;Parent=MS.gene59051.t1 |
| chr8.4 | exon | 13856267 | 13856446 | 13856267 | ID=MS.gene59051.t1.exon2;Parent=MS.gene59051.t1 |
| chr8.4 | CDS | 13856267 | 13856446 | 13856267 | ID=cds.MS.gene59051.t1;Parent=MS.gene59051.t1 |
| chr8.4 | exon | 13856121 | 13856172 | 13856121 | ID=MS.gene59051.t1.exon3;Parent=MS.gene59051.t1 |
| chr8.4 | CDS | 13856121 | 13856172 | 13856121 | ID=cds.MS.gene59051.t1;Parent=MS.gene59051.t1 |
| chr8.4 | exon | 13855919 | 13856011 | 13855919 | ID=MS.gene59051.t1.exon4;Parent=MS.gene59051.t1 |
| chr8.4 | CDS | 13855919 | 13856011 | 13855919 | ID=cds.MS.gene59051.t1;Parent=MS.gene59051.t1 |
| Gene Sequence |
| Protein sequence |
