Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59143.t1 | XP_013466509.1 | 99.1 | 329 | 3 | 0 | 1 | 329 | 46 | 374 | 4.20E-177 | 630.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59143.t1 | Q9ZU32 | 81.6 | 315 | 58 | 0 | 15 | 329 | 34 | 348 | 2.8e-145 | 516.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59143.t1 | A0A072VQY4 | 99.1 | 329 | 3 | 0 | 1 | 329 | 46 | 374 | 3.0e-177 | 630.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049153 | MS.gene59143 | 0.80774 | 4.36E-50 | -1.69E-46 |
MS.gene050226 | MS.gene59143 | 0.808114 | 3.63E-50 | -1.69E-46 |
MS.gene051568 | MS.gene59143 | 0.811218 | 7.81E-51 | -1.69E-46 |
MS.gene051860 | MS.gene59143 | 0.822195 | 2.70E-53 | -1.69E-46 |
MS.gene054473 | MS.gene59143 | 0.802873 | 4.56E-49 | -1.69E-46 |
MS.gene055356 | MS.gene59143 | 0.811288 | 7.55E-51 | -1.69E-46 |
MS.gene056875 | MS.gene59143 | 0.842533 | 2.44E-58 | -1.69E-46 |
MS.gene057469 | MS.gene59143 | 0.839613 | 1.43E-57 | -1.69E-46 |
MS.gene057750 | MS.gene59143 | 0.821342 | 4.25E-53 | -1.69E-46 |
MS.gene05907 | MS.gene59143 | 0.814291 | 1.66E-51 | -1.69E-46 |
MS.gene059128 | MS.gene59143 | 0.812574 | 3.96E-51 | -1.69E-46 |
MS.gene059609 | MS.gene59143 | 0.803387 | 3.57E-49 | -1.69E-46 |
MS.gene061071 | MS.gene59143 | 0.805114 | 1.56E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene59143 | MS.gene90508 | PPI |
MS.gene59143 | MS.gene56790 | PPI |
MS.gene59143 | MS.gene011805 | PPI |
MS.gene59143 | MS.gene99212 | PPI |
MS.gene59143 | MS.gene041065 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59143.t1 | MTR_1g030750 | 99.088 | 329 | 3 | 0 | 1 | 329 | 46 | 374 | 0.0 | 668 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59143.t1 | AT2G01350 | 81.587 | 315 | 58 | 0 | 15 | 329 | 13 | 327 | 0.0 | 544 |
MS.gene59143.t1 | AT2G01350 | 81.587 | 315 | 58 | 0 | 15 | 329 | 34 | 348 | 0.0 | 543 |
MS.gene59143.t1 | AT2G01350 | 80.635 | 315 | 55 | 1 | 15 | 329 | 34 | 342 | 0.0 | 529 |
MS.gene59143.t1 | AT2G01350 | 82.562 | 281 | 49 | 0 | 49 | 329 | 1 | 281 | 6.92e-175 | 486 |
Find 74 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGAATAATGCTGGATAATA+TGG | 0.220541 | 1.4:-15593747 | MS.gene59143:CDS |
TGAGGTTGATCCTTCTTTAA+AGG | 0.228429 | 1.4:-15595505 | MS.gene59143:intron |
TTCCTTGTATAGGTATTAAT+TGG | 0.238723 | 1.4:-15594419 | MS.gene59143:intron |
CTACAGTTTGGAAAAGTTAA+TGG | 0.303618 | 1.4:-15595357 | MS.gene59143:intron |
GTGGAGTAACCTACATTTCT+AGG | 0.319411 | 1.4:-15592772 | MS.gene59143:intron |
AAAAGCTGTTGACCTGTATC+TGG | 0.332775 | 1.4:-15594306 | MS.gene59143:CDS |
GCAGAAGATGCTGGGGATCT+AGG | 0.339591 | 1.4:-15595819 | MS.gene59143:intron |
AAGGAGGATGGCATCGTTGC+TGG | 0.343013 | 1.4:-15595555 | MS.gene59143:CDS |
GGAAGTGGAAGCTTATTTCT+TGG | 0.353991 | 1.4:-15595580 | MS.gene59143:CDS |
TGCTCCGTGTTTACGTTTGT+TGG | 0.360433 | 1.4:-15594546 | MS.gene59143:CDS |
CCTCAAAATTGATACTGAAT+TGG | 0.380529 | 1.4:-15592438 | MS.gene59143:CDS |
TCAACATCTCCGTTTGATAA+AGG | 0.380628 | 1.4:+15593719 | None:intergenic |
ATAGATACAGTACATAAAAT+CGG | 0.383450 | 1.4:-15592800 | MS.gene59143:CDS |
GTACATAAAGGACTACAGTT+TGG | 0.396949 | 1.4:-15595369 | MS.gene59143:CDS |
ATATCATAATCAAGCTCTTC+CGG | 0.398861 | 1.4:+15592394 | None:intergenic |
GCATCCTACTTATGATTTGA+AGG | 0.401374 | 1.4:-15595862 | MS.gene59143:CDS |
TATTTGTGAATCCAGGCTTC+AGG | 0.405459 | 1.4:-15592833 | MS.gene59143:intron |
TTCTTTAACTCGAATAATGC+TGG | 0.425179 | 1.4:-15593756 | MS.gene59143:CDS |
TTGGCTCTTGCAGAAGATGC+TGG | 0.429505 | 1.4:-15595828 | MS.gene59143:CDS |
GAAGCTGTGCGGTTGGTCAA+TGG | 0.438267 | 1.4:-15593680 | MS.gene59143:CDS |
TTTGAAGGGCATTATAAAGT+TGG | 0.445902 | 1.4:-15595847 | MS.gene59143:CDS |
AAGCTGTGCGGTTGGTCAAT+GGG | 0.445964 | 1.4:-15593679 | MS.gene59143:CDS |
AGCATCGCCTGCATATATAT+TGG | 0.446995 | 1.4:-15594582 | MS.gene59143:CDS |
ACTGAATTGGCGCTTAAAGT+TGG | 0.451185 | 1.4:-15592425 | MS.gene59143:CDS |
GTTTACGTTTGTTGGATAAG+TGG | 0.454989 | 1.4:-15594538 | MS.gene59143:CDS |
TTGCTTCATACCTTTAAAGA+AGG | 0.458741 | 1.4:+15595495 | None:intergenic |
GCTTCCACTTCCATGTCAAA+TGG | 0.464861 | 1.4:+15595591 | None:intergenic |
AAAACTTTACCTAGAAATGT+AGG | 0.470300 | 1.4:+15592763 | None:intergenic |
TTTACGTTTGTTGGATAAGT+GGG | 0.473302 | 1.4:-15594537 | MS.gene59143:CDS |
CTAGTCTCCAATATATATGC+AGG | 0.474951 | 1.4:+15594575 | None:intergenic |
CTACCTCAACGTCCAATTGA+AGG | 0.479255 | 1.4:+15594273 | None:intergenic |
CTTGTATAGGTATTAATTGG+TGG | 0.481768 | 1.4:-15594416 | MS.gene59143:intron |
CATCCTACTTATGATTTGAA+GGG | 0.486121 | 1.4:-15595861 | MS.gene59143:CDS |
GACTAGGACTCTTGAGGAAG+TGG | 0.488980 | 1.4:-15593813 | MS.gene59143:CDS |
TGGCTCTTGCAGAAGATGCT+GGG | 0.489155 | 1.4:-15595827 | MS.gene59143:CDS |
TGCAGAGATGATATTTAATG+AGG | 0.494921 | 1.4:-15595523 | MS.gene59143:CDS |
TAACATTGTTGTAGCTGAAA+GGG | 0.499902 | 1.4:-15595211 | MS.gene59143:CDS |
ATGGTTGTACCTTTATCAAA+CGG | 0.511127 | 1.4:-15593728 | MS.gene59143:CDS |
GATAATCATATATCAACAGC+TGG | 0.512224 | 1.4:-15594347 | MS.gene59143:CDS |
CATTCCATTTGACATGGAAG+TGG | 0.517963 | 1.4:-15595595 | MS.gene59143:CDS |
ATAACATTGTTGTAGCTGAA+AGG | 0.525165 | 1.4:-15595212 | MS.gene59143:CDS |
AGCTTATTTCTTGGCGAAGG+AGG | 0.525562 | 1.4:-15595571 | MS.gene59143:CDS |
AATTGGCGCTTAAAGTTGGA+AGG | 0.528440 | 1.4:-15592421 | MS.gene59143:CDS |
TAGATACAGTACATAAAATC+GGG | 0.531386 | 1.4:-15592799 | MS.gene59143:CDS |
TATAGGTGATATAACATGCT+TGG | 0.532134 | 1.4:-15595622 | MS.gene59143:intron |
CTTTGAAATATTAGGTGGAG+TGG | 0.532195 | 1.4:-15595413 | MS.gene59143:intron |
CACTTCCATGTCAAATGGAA+TGG | 0.532228 | 1.4:+15595596 | None:intergenic |
TGGAGGACGAAATCATAGAA+TGG | 0.532624 | 1.4:-15594396 | MS.gene59143:CDS |
TATTTCTTGGCGAAGGAGGA+TGG | 0.532732 | 1.4:-15595567 | MS.gene59143:CDS |
GGAGGACGAAATCATAGAAT+GGG | 0.538882 | 1.4:-15594395 | MS.gene59143:CDS |
CTTAAAGTTGGAAGGCGCAC+CGG | 0.542235 | 1.4:-15592413 | MS.gene59143:CDS |
AACTTTATGCAGAGGATGAG+TGG | 0.553734 | 1.4:-15595180 | MS.gene59143:CDS |
ATGCCCTTCAAATCATAAGT+AGG | 0.554178 | 1.4:+15595858 | None:intergenic |
TAGAATGGGTTTGTTTGACA+TGG | 0.558081 | 1.4:-15594381 | MS.gene59143:CDS |
GGAAGCTTATTTCTTGGCGA+AGG | 0.572983 | 1.4:-15595574 | MS.gene59143:CDS |
AAATCATAAGTAGGATGCAA+AGG | 0.574927 | 1.4:+15595867 | None:intergenic |
GTATAGGTATTAATTGGTGG+AGG | 0.583098 | 1.4:-15594413 | MS.gene59143:intron |
GGCTCTTGCAGAAGATGCTG+GGG | 0.588390 | 1.4:-15595826 | MS.gene59143:CDS |
TAGCCTTCAATTGGACGTTG+AGG | 0.593893 | 1.4:-15594276 | MS.gene59143:intron |
TGGCATTGCAACTTTAACCA+AGG | 0.597429 | 1.4:-15595160 | MS.gene59143:intron |
GGCCACCATTCCATTTGACA+TGG | 0.598004 | 1.4:-15595601 | MS.gene59143:CDS |
TTCCATGTCAAATGGAATGG+TGG | 0.599989 | 1.4:+15595599 | None:intergenic |
CAAAGGAGGCTTTACTGCAA+AGG | 0.601034 | 1.4:+15595884 | None:intergenic |
GCTGAAAGAAGCTGTGCGGT+TGG | 0.613125 | 1.4:-15593687 | MS.gene59143:CDS |
CAATGGGAGATTTGAAACTG+AGG | 0.629104 | 1.4:-15593663 | MS.gene59143:intron |
GGTTGAGACTAGGACTCTTG+AGG | 0.629180 | 1.4:-15593819 | MS.gene59143:CDS |
TAGTGCTAAACTTTATGCAG+AGG | 0.631286 | 1.4:-15595188 | MS.gene59143:CDS |
GTACATAAAATCGGGCAAAG+TGG | 0.642028 | 1.4:-15592791 | MS.gene59143:CDS |
AAGGACTCGTATGAGATCGT+CGG | 0.643661 | 1.4:+15595903 | None:intergenic |
TCATAAGTAGGATGCAAAGG+AGG | 0.644964 | 1.4:+15595870 | None:intergenic |
ACGTTTGTTGGATAAGTGGG+CGG | 0.647258 | 1.4:-15594534 | MS.gene59143:intron |
TTATCCAACAAACGTAAACA+CGG | 0.659218 | 1.4:+15594542 | None:intergenic |
AATCATATATCAACAGCTGG+AGG | 0.664583 | 1.4:-15594344 | MS.gene59143:CDS |
CTATGCTGAAAGAAGCTGTG+CGG | 0.758489 | 1.4:-15593691 | MS.gene59143:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAAAATAAAATAAAAA+TGG | + | chr1.4:15594166-15594185 | None:intergenic | 0.0% |
!! | TATAAAAAAATATAAATAAA+TGG | + | chr1.4:15593860-15593879 | None:intergenic | 0.0% |
!! | AAAATTATTCATTAAGAATC+AGG | + | chr1.4:15594120-15594139 | None:intergenic | 15.0% |
!! | AAATTATTCATTAAGAATCA+GGG | + | chr1.4:15594119-15594138 | None:intergenic | 15.0% |
!! | ATATAATAATGAACAAATCA+CGG | - | chr1.4:15593564-15593583 | MS.gene59143:intron | 15.0% |
!! | TAATATTATAAACCATATGT+TGG | - | chr1.4:15595717-15595736 | MS.gene59143:intron | 15.0% |
!! | TATTGATAAAAAAATGAATG+AGG | + | chr1.4:15593547-15593566 | None:intergenic | 15.0% |
!! | TGATAAATATAAGATAACAA+TGG | + | chr1.4:15593684-15593703 | None:intergenic | 15.0% |
!! | TTAAGAAAATAAAAATACCT+TGG | + | chr1.4:15593190-15593209 | None:intergenic | 15.0% |
!!! | AAAATAGAAATTTTTTGTGA+AGG | - | chr1.4:15595214-15595233 | MS.gene59143:CDS | 15.0% |
!!! | TATCTAATCGTTTTTTTATT+TGG | - | chr1.4:15595377-15595396 | MS.gene59143:CDS | 15.0% |
!!! | TTATTTTGATATCTTGAATT+TGG | - | chr1.4:15595413-15595432 | MS.gene59143:intron | 15.0% |
!! | AAAATTTCATTGCTTTGATA+TGG | - | chr1.4:15595819-15595838 | MS.gene59143:intron | 20.0% |
!! | AAATTTCATTGCTTTGATAT+GGG | - | chr1.4:15595820-15595839 | MS.gene59143:CDS | 20.0% |
!! | ATAGATACAGTACATAAAAT+CGG | - | chr1.4:15595530-15595549 | MS.gene59143:CDS | 20.0% |
!! | ATATTGTATGATGTTTGTAA+AGG | - | chr1.4:15593236-15593255 | MS.gene59143:intron | 20.0% |
!! | ATGTATAAAAATGAAAGGAA+TGG | + | chr1.4:15593835-15593854 | None:intergenic | 20.0% |
!! | ATTGAATTGAAATGGTTAAA+AGG | - | chr1.4:15593314-15593333 | MS.gene59143:intron | 20.0% |
!! | TAACCACAAATATTATGATA+GGG | + | chr1.4:15592871-15592890 | None:intergenic | 20.0% |
!! | TTAACCACAAATATTATGAT+AGG | + | chr1.4:15592872-15592891 | None:intergenic | 20.0% |
!! | TTGTTGTGAAATCTATTAAA+GGG | + | chr1.4:15594189-15594208 | None:intergenic | 20.0% |
!!! | ATAAGAAATGTTTTGACTAT+AGG | - | chr1.4:15592691-15592710 | MS.gene59143:intron | 20.0% |
!!! | CAATTATATAAAGCTTTGTT+AGG | + | chr1.4:15594310-15594329 | None:intergenic | 20.0% |
!!! | CTAACAAAGCTTTATATAAT+TGG | - | chr1.4:15594308-15594327 | MS.gene59143:CDS | 20.0% |
!!! | GTTTGTAATTGATTTATGAA+AGG | - | chr1.4:15593055-15593074 | MS.gene59143:intron | 20.0% |
! | AAAACTTTACCTAGAAATGT+AGG | + | chr1.4:15595570-15595589 | None:intergenic | 25.0% |
! | AAAGAAGGAAAAGTTAGTTA+GGG | - | chr1.4:15595118-15595137 | MS.gene59143:intron | 25.0% |
! | AACGATTCACAGTTAATTAT+TGG | - | chr1.4:15593278-15593297 | MS.gene59143:intron | 25.0% |
! | AACTTAATTACGAAAGCAAA+TGG | - | chr1.4:15593015-15593034 | MS.gene59143:intron | 25.0% |
! | AATTCAGATTGAGTAAAAGA+TGG | - | chr1.4:15593618-15593637 | MS.gene59143:intron | 25.0% |
! | AATTCTTGACTTAATCATTG+AGG | - | chr1.4:15592890-15592909 | MS.gene59143:intron | 25.0% |
! | ACAATACATGTAGAAATTGA+AGG | + | chr1.4:15595640-15595659 | None:intergenic | 25.0% |
! | ATACCCTATCATAATATTTG+TGG | - | chr1.4:15592865-15592884 | MS.gene59143:intron | 25.0% |
! | GTTGTTGTGAAATCTATTAA+AGG | + | chr1.4:15594190-15594209 | None:intergenic | 25.0% |
! | TAGAAATAAAAACAGTGTGT+TGG | + | chr1.4:15594836-15594855 | None:intergenic | 25.0% |
! | TAGATACAGTACATAAAATC+GGG | - | chr1.4:15595531-15595550 | MS.gene59143:CDS | 25.0% |
! | TGGTCATGTATAAAAATGAA+AGG | + | chr1.4:15593840-15593859 | None:intergenic | 25.0% |
! | TTAAAATGCCATTAAATGGA+CGG | + | chr1.4:15594356-15594375 | None:intergenic | 25.0% |
! | TTAACCTGTATCGTATTATT+CGG | - | chr1.4:15594713-15594732 | MS.gene59143:intron | 25.0% |
! | TTCCTTGTATAGGTATTAAT+TGG | - | chr1.4:15593911-15593930 | MS.gene59143:intron | 25.0% |
! | TTTATTGAAACTGGAGAAAA+TGG | + | chr1.4:15595268-15595287 | None:intergenic | 25.0% |
!! | CAAAGCAATGAAATTTTGTA+GGG | + | chr1.4:15595816-15595835 | None:intergenic | 25.0% |
!! | CAATTCAGTATCAATTTTGA+GGG | + | chr1.4:15595894-15595913 | None:intergenic | 25.0% |
!! | TCAAAGCAATGAAATTTTGT+AGG | + | chr1.4:15595817-15595836 | None:intergenic | 25.0% |
!! | TCCATTTAATGGCATTTTAA+TGG | - | chr1.4:15594356-15594375 | MS.gene59143:CDS | 25.0% |
!! | TTTATCCTAAGAGAAGTTTT+AGG | - | chr1.4:15593452-15593471 | MS.gene59143:intron | 25.0% |
!!! | ACAGTTAATTATTGGTAATG+TGG | - | chr1.4:15593286-15593305 | MS.gene59143:intron | 25.0% |
!!! | AGTTAATTATTGGTAATGTG+GGG | - | chr1.4:15593288-15593307 | MS.gene59143:intron | 25.0% |
!!! | CAGTTAATTATTGGTAATGT+GGG | - | chr1.4:15593287-15593306 | MS.gene59143:intron | 25.0% |
!!! | GAGGATTACTTTGAAATATT+AGG | - | chr1.4:15592909-15592928 | MS.gene59143:intron | 25.0% |
!!! | GATTACTTTGAAATATTAGG+TGG | - | chr1.4:15592912-15592931 | MS.gene59143:intron | 25.0% |
!!! | GTAAGTGTTTTTATTGAAAC+TGG | + | chr1.4:15595277-15595296 | None:intergenic | 25.0% |
!!! | TATTGTTGATTTCCTTGTAT+AGG | - | chr1.4:15593901-15593920 | MS.gene59143:intron | 25.0% |
AAATCATAAGTAGGATGCAA+AGG | + | chr1.4:15592466-15592485 | None:intergenic | 30.0% | |
AACAGACAGAAACAAAAACA+TGG | + | chr1.4:15594859-15594878 | None:intergenic | 30.0% | |
AACTTCTCTTAGGATAAATG+TGG | + | chr1.4:15593450-15593469 | None:intergenic | 30.0% | |
AAGCAAAGGAAGAATCAAAA+TGG | + | chr1.4:15595746-15595765 | None:intergenic | 30.0% | |
AGGTAATTCAAGGTTAAGAT+GGG | + | chr1.4:15594267-15594286 | None:intergenic | 30.0% | |
AGTAAGAGAGGATTATTAAG+AGG | - | chr1.4:15595151-15595170 | MS.gene59143:intron | 30.0% | |
ATAACATTGTTGTAGCTGAA+AGG | - | chr1.4:15593118-15593137 | MS.gene59143:intron | 30.0% | |
ATCTTCAGTTATTCATGTGT+AGG | - | chr1.4:15593087-15593106 | MS.gene59143:intron | 30.0% | |
ATGGTTGTACCTTTATCAAA+CGG | - | chr1.4:15594602-15594621 | MS.gene59143:intron | 30.0% | |
ATTCTCCTAAAACTTCTCTT+AGG | + | chr1.4:15593460-15593479 | None:intergenic | 30.0% | |
CACCAATTAATACCTATACA+AGG | + | chr1.4:15593916-15593935 | None:intergenic | 30.0% | |
CACTAATCTGACAAATTGTT+AGG | + | chr1.4:15593512-15593531 | None:intergenic | 30.0% | |
CATCCTACTTATGATTTGAA+GGG | - | chr1.4:15592469-15592488 | MS.gene59143:CDS | 30.0% | |
CATGAAACTAGAAGAAAGTT+TGG | + | chr1.4:15592544-15592563 | None:intergenic | 30.0% | |
CATTACAGCAGTATATTTCA+CGG | + | chr1.4:15595055-15595074 | None:intergenic | 30.0% | |
CCTCAAAATTGATACTGAAT+TGG | - | chr1.4:15595892-15595911 | MS.gene59143:CDS | 30.0% | |
CCTGTGAAAAAACATGATAT+AGG | + | chr1.4:15593715-15593734 | None:intergenic | 30.0% | |
CTACAGTTTGGAAAAGTTAA+TGG | - | chr1.4:15592973-15592992 | MS.gene59143:intron | 30.0% | |
CTTGTATAGGTATTAATTGG+TGG | - | chr1.4:15593914-15593933 | MS.gene59143:intron | 30.0% | |
GAAAGAAGGAAAAGTTAGTT+AGG | - | chr1.4:15595117-15595136 | MS.gene59143:intron | 30.0% | |
GAATTGAAATGGTTAAAAGG+AGG | - | chr1.4:15593317-15593336 | MS.gene59143:intron | 30.0% | |
GATAATCATATATCAACAGC+TGG | - | chr1.4:15593983-15594002 | MS.gene59143:intron | 30.0% | |
GCCATTAAAATGCCATTAAA+TGG | + | chr1.4:15594360-15594379 | None:intergenic | 30.0% | |
GTAAGAGAGGATTATTAAGA+GGG | - | chr1.4:15595152-15595171 | MS.gene59143:intron | 30.0% | |
GTTAAATGCATTTGTAGATC+TGG | - | chr1.4:15594407-15594426 | MS.gene59143:CDS | 30.0% | |
TAAAACAGTGACTAAAGCAA+AGG | + | chr1.4:15595760-15595779 | None:intergenic | 30.0% | |
TAACATTGTTGTAGCTGAAA+GGG | - | chr1.4:15593119-15593138 | MS.gene59143:intron | 30.0% | |
TAAGAAACAAACAAGTCCAA+AGG | + | chr1.4:15595354-15595373 | None:intergenic | 30.0% | |
TAAGAGAGGATTATTAAGAG+GGG | - | chr1.4:15595153-15595172 | MS.gene59143:intron | 30.0% | |
TATAGGTGATATAACATGCT+TGG | - | chr1.4:15592708-15592727 | MS.gene59143:intron | 30.0% | |
TCGAATAATGCTGGATAATA+TGG | - | chr1.4:15594583-15594602 | MS.gene59143:CDS | 30.0% | |
TGATATCTTGAATTTGGTTG+AGG | - | chr1.4:15595419-15595438 | MS.gene59143:intron | 30.0% | |
TGCAGAGATGATATTTAATG+AGG | - | chr1.4:15592807-15592826 | MS.gene59143:CDS | 30.0% | |
TGGGGAATATTGAATTGAAA+TGG | - | chr1.4:15593306-15593325 | MS.gene59143:intron | 30.0% | |
TGGTGATTTCAGAAATCATT+AGG | + | chr1.4:15593664-15593683 | None:intergenic | 30.0% | |
TGTTTGTAAAGGTTCTTGTA+AGG | - | chr1.4:15593247-15593266 | MS.gene59143:intron | 30.0% | |
TTATCCAACAAACGTAAACA+CGG | + | chr1.4:15593791-15593810 | None:intergenic | 30.0% | |
TTCTTTAACTCGAATAATGC+TGG | - | chr1.4:15594574-15594593 | MS.gene59143:CDS | 30.0% | |
TTTGTCATATTTGTGAATCC+AGG | - | chr1.4:15595490-15595509 | MS.gene59143:intron | 30.0% | |
! | CCAATTCAGTATCAATTTTG+AGG | + | chr1.4:15595895-15595914 | None:intergenic | 30.0% |
! | GATGGAGATTTTGTACATAA+AGG | - | chr1.4:15592949-15592968 | MS.gene59143:intron | 30.0% |
! | GTGAATTTGATAGTTTCTGT+TGG | - | chr1.4:15595191-15595210 | MS.gene59143:CDS | 30.0% |
! | TCAAAATGGATTCCAACATA+TGG | + | chr1.4:15595732-15595751 | None:intergenic | 30.0% |
! | TTGCTTCATACCTTTAAAGA+AGG | + | chr1.4:15592838-15592857 | None:intergenic | 30.0% |
! | TTTACGTTTGTTGGATAAGT+GGG | - | chr1.4:15593793-15593812 | MS.gene59143:CDS | 30.0% |
!! | GTTTTTAGAAACTCACAAAC+CGG | - | chr1.4:15595782-15595801 | MS.gene59143:intron | 30.0% |
!! | TTTGAAGGGCATTATAAAGT+TGG | - | chr1.4:15592483-15592502 | MS.gene59143:intron | 30.0% |
!! | TTTTAACTACCCTACAGATA+TGG | + | chr1.4:15594236-15594255 | None:intergenic | 30.0% |
!!! | CCTATATCATGTTTTTTCAC+AGG | - | chr1.4:15593712-15593731 | MS.gene59143:CDS | 30.0% |
AAAAGTTAGTTAGGGTCAGT+TGG | - | chr1.4:15595126-15595145 | MS.gene59143:intron | 35.0% | |
AAAATGGCTGCAATATAGAG+AGG | + | chr1.4:15594150-15594169 | None:intergenic | 35.0% | |
AAATGGCTGCAATATAGAGA+GGG | + | chr1.4:15594149-15594168 | None:intergenic | 35.0% | |
AAGACCGAATAATACGATAC+AGG | + | chr1.4:15594720-15594739 | None:intergenic | 35.0% | |
AATCATATATCAACAGCTGG+AGG | - | chr1.4:15593986-15594005 | MS.gene59143:intron | 35.0% | |
AATTTGACACGACCGTTATT+GGG | - | chr1.4:15595090-15595109 | MS.gene59143:intron | 35.0% | |
AGCAAAGATGAGGTAATTCA+AGG | + | chr1.4:15594277-15594296 | None:intergenic | 35.0% | |
AGTTAGTTAAGAACGTGAAG+AGG | + | chr1.4:15595465-15595484 | None:intergenic | 35.0% | |
ATGAGTTTACACTCCAAATG+TGG | - | chr1.4:15594966-15594985 | MS.gene59143:intron | 35.0% | |
ATGCCCTTCAAATCATAAGT+AGG | + | chr1.4:15592475-15592494 | None:intergenic | 35.0% | |
CGTGAAATATACTGCTGTAA+TGG | - | chr1.4:15595053-15595072 | MS.gene59143:intron | 35.0% | |
CTAGTCTCCAATATATATGC+AGG | + | chr1.4:15593758-15593777 | None:intergenic | 35.0% | |
CTTCTTTCTTACCCCAATAA+CGG | + | chr1.4:15595105-15595124 | None:intergenic | 35.0% | |
GAGGTAATTCAAGGTTAAGA+TGG | + | chr1.4:15594268-15594287 | None:intergenic | 35.0% | |
GCATCCTACTTATGATTTGA+AGG | - | chr1.4:15592468-15592487 | MS.gene59143:CDS | 35.0% | |
GCTATGCATCTTAAAGTGAT+TGG | - | chr1.4:15594378-15594397 | MS.gene59143:CDS | 35.0% | |
GGAGAAAAATAGCCTTCAAT+TGG | - | chr1.4:15594045-15594064 | MS.gene59143:intron | 35.0% | |
GTACATAAAGGACTACAGTT+TGG | - | chr1.4:15592961-15592980 | MS.gene59143:intron | 35.0% | |
GTATAGGTATTAATTGGTGG+AGG | - | chr1.4:15593917-15593936 | MS.gene59143:intron | 35.0% | |
TAGATCTGGTGTTCATGATA+TGG | - | chr1.4:15594421-15594440 | MS.gene59143:intron | 35.0% | |
TAGTGCTAAACTTTATGCAG+AGG | - | chr1.4:15593142-15593161 | MS.gene59143:intron | 35.0% | |
TCAACATCTCCGTTTGATAA+AGG | + | chr1.4:15594614-15594633 | None:intergenic | 35.0% | |
TCAGTTATTCATGTGTAGGA+CGG | - | chr1.4:15593091-15593110 | MS.gene59143:intron | 35.0% | |
TCTTTATTGAAGAGTAGCCT+CGG | + | chr1.4:15593400-15593419 | None:intergenic | 35.0% | |
TGGTTGTGTTATGTTTCATC+AGG | - | chr1.4:15593638-15593657 | MS.gene59143:intron | 35.0% | |
TTGTGAAGGAGAAATTCTCA+GGG | - | chr1.4:15595228-15595247 | MS.gene59143:intron | 35.0% | |
TTTGTGAAGGAGAAATTCTC+AGG | - | chr1.4:15595227-15595246 | MS.gene59143:intron | 35.0% | |
! | ATACAGGTCAACAGCTTTTA+GGG | + | chr1.4:15594023-15594042 | None:intergenic | 35.0% |
! | ATTTTGTAGGGAAACAGTAC+CGG | + | chr1.4:15595804-15595823 | None:intergenic | 35.0% |
! | CTAGATTTTATGAAGTGCAG+TGG | + | chr1.4:15595597-15595616 | None:intergenic | 35.0% |
! | GTTTACGTTTGTTGGATAAG+TGG | - | chr1.4:15593792-15593811 | MS.gene59143:CDS | 35.0% |
! | TAGAATGGGTTTGTTTGACA+TGG | - | chr1.4:15593949-15593968 | MS.gene59143:intron | 35.0% |
! | TGAGGTTGATCCTTCTTTAA+AGG | - | chr1.4:15592825-15592844 | MS.gene59143:intron | 35.0% |
! | TGTCAAATTGATGACAACCA+AGG | + | chr1.4:15595079-15595098 | None:intergenic | 35.0% |
!! | AAAGCTTTGTTAGGCAGTTA+AGG | + | chr1.4:15594301-15594320 | None:intergenic | 35.0% |
!! | AAGCTTTAAGAAATGGACAG+TGG | + | chr1.4:15595320-15595339 | None:intergenic | 35.0% |
!! | AGAGAGGAAGCTTTAAGAAA+TGG | + | chr1.4:15595327-15595346 | None:intergenic | 35.0% |
!! | CTTTGAAATATTAGGTGGAG+TGG | - | chr1.4:15592917-15592936 | MS.gene59143:intron | 35.0% |
!!! | TCATGTTTTTTCACAGGCAA+TGG | - | chr1.4:15593718-15593737 | MS.gene59143:CDS | 35.0% |
AAAAGCTGTTGACCTGTATC+TGG | - | chr1.4:15594024-15594043 | MS.gene59143:intron | 40.0% | |
AACTTTATGCAGAGGATGAG+TGG | - | chr1.4:15593150-15593169 | MS.gene59143:intron | 40.0% | |
AATGTTGACCTCAAGACATG+CGG | + | chr1.4:15594993-15595012 | None:intergenic | 40.0% | |
AATTGGCGCTTAAAGTTGGA+AGG | - | chr1.4:15595909-15595928 | MS.gene59143:CDS | 40.0% | |
ACTGAATTGGCGCTTAAAGT+TGG | - | chr1.4:15595905-15595924 | MS.gene59143:CDS | 40.0% | |
AGCATCGCCTGCATATATAT+TGG | - | chr1.4:15593748-15593767 | MS.gene59143:CDS | 40.0% | |
ATATACTGCTGTAATGGCCT+TGG | - | chr1.4:15595059-15595078 | MS.gene59143:intron | 40.0% | |
ATCTGGTGTTCATGATATGG+CGG | - | chr1.4:15594424-15594443 | MS.gene59143:intron | 40.0% | |
ATGTCTGTCCGTCCATTTAA+TGG | - | chr1.4:15594345-15594364 | MS.gene59143:CDS | 40.0% | |
ATTTGACACGACCGTTATTG+GGG | - | chr1.4:15595091-15595110 | MS.gene59143:intron | 40.0% | |
CAAGTCCAAAGGAAAAAGAG+AGG | + | chr1.4:15595343-15595362 | None:intergenic | 40.0% | |
CAATTTGACACGACCGTTAT+TGG | - | chr1.4:15595089-15595108 | MS.gene59143:intron | 40.0% | |
CACTTCCATGTCAAATGGAA+TGG | + | chr1.4:15592737-15592756 | None:intergenic | 40.0% | |
CAGTTAAGGAAGCAAAGATG+AGG | + | chr1.4:15594287-15594306 | None:intergenic | 40.0% | |
CAGTTATTCATGTGTAGGAC+GGG | - | chr1.4:15593092-15593111 | MS.gene59143:intron | 40.0% | |
CATTCCATTTGACATGGAAG+TGG | - | chr1.4:15592735-15592754 | MS.gene59143:intron | 40.0% | |
CCTTAGAAAGAATGCGTGAA+AGG | + | chr1.4:15594096-15594115 | None:intergenic | 40.0% | |
CCTTTCACGCATTCTTTCTA+AGG | - | chr1.4:15594093-15594112 | MS.gene59143:intron | 40.0% | |
CGTTATTGGGGTAAGAAAGA+AGG | - | chr1.4:15595103-15595122 | MS.gene59143:intron | 40.0% | |
GAACTAGTTGTTTACCAGCA+TGG | + | chr1.4:15594451-15594470 | None:intergenic | 40.0% | |
GCACAACTGGATCAGATAAA+AGG | + | chr1.4:15593428-15593447 | None:intergenic | 40.0% | |
GGAGGACGAAATCATAGAAT+GGG | - | chr1.4:15593935-15593954 | MS.gene59143:intron | 40.0% | |
GGATTATTAAGAGGGGATGT+AGG | - | chr1.4:15595160-15595179 | MS.gene59143:intron | 40.0% | |
GTACATAAAATCGGGCAAAG+TGG | - | chr1.4:15595539-15595558 | MS.gene59143:CDS | 40.0% | |
GTGGAGTAACCTACATTTCT+AGG | - | chr1.4:15595558-15595577 | MS.gene59143:CDS | 40.0% | |
GTGGAGTGGTCTAAAAATGA+TGG | - | chr1.4:15592931-15592950 | MS.gene59143:intron | 40.0% | |
TAGGATAAATGTGGCACAAC+TGG | + | chr1.4:15593441-15593460 | None:intergenic | 40.0% | |
TATTTGTGAATCCAGGCTTC+AGG | - | chr1.4:15595497-15595516 | MS.gene59143:intron | 40.0% | |
TCATAAGTAGGATGCAAAGG+AGG | + | chr1.4:15592463-15592482 | None:intergenic | 40.0% | |
TCCTACTTGCCATATCTGTA+GGG | - | chr1.4:15594224-15594243 | MS.gene59143:intron | 40.0% | |
TGCTGGTAAACAACTAGTTC+TGG | - | chr1.4:15594451-15594470 | MS.gene59143:intron | 40.0% | |
TGGAGGACGAAATCATAGAA+TGG | - | chr1.4:15593934-15593953 | MS.gene59143:intron | 40.0% | |
TGGCATTGCAACTTTAACCA+AGG | - | chr1.4:15593170-15593189 | MS.gene59143:intron | 40.0% | |
TTCCATGTCAAATGGAATGG+TGG | + | chr1.4:15592734-15592753 | None:intergenic | 40.0% | |
! | AGCTTCCTCTCTTTTTCCTT+TGG | - | chr1.4:15595335-15595354 | MS.gene59143:intron | 40.0% |
! | CAATGGGAGATTTGAAACTG+AGG | - | chr1.4:15594667-15594686 | MS.gene59143:intron | 40.0% |
! | GAAACTGAGGTATTCATGAC+TGG | - | chr1.4:15594680-15594699 | MS.gene59143:intron | 40.0% |
! | GATACAGGTCAACAGCTTTT+AGG | + | chr1.4:15594024-15594043 | None:intergenic | 40.0% |
! | GGAAGTGGAAGCTTATTTCT+TGG | - | chr1.4:15592750-15592769 | MS.gene59143:intron | 40.0% |
! | GTAAGTTTGTGTTTTTCCCC+AGG | - | chr1.4:15594490-15594509 | MS.gene59143:intron | 40.0% |
! | GTTCTGTTTCTCTTGGATAC+TGG | - | chr1.4:15593374-15593393 | MS.gene59143:intron | 40.0% |
! | TTGATATGGGTTTTCTGCAG+TGG | - | chr1.4:15595833-15595852 | MS.gene59143:CDS | 40.0% |
!! | ACATCTGGTTCTGTTTCTCT+TGG | - | chr1.4:15593367-15593386 | MS.gene59143:intron | 40.0% |
!!! | GGCTATTTTTCTCCAGATAC+AGG | + | chr1.4:15594039-15594058 | None:intergenic | 40.0% |
AAGAGTCCTAGTCTCAACCT+GGG | + | chr1.4:15594510-15594529 | None:intergenic | 45.0% | |
AAGGACTCGTATGAGATCGT+CGG | + | chr1.4:15592430-15592449 | None:intergenic | 45.0% | |
AATGCAGCATTCCTGACATC+TGG | - | chr1.4:15593352-15593371 | MS.gene59143:intron | 45.0% | |
ACAGATATGGCAAGTAGGAG+TGG | + | chr1.4:15594223-15594242 | None:intergenic | 45.0% | |
ACCCTACAGATATGGCAAGT+AGG | + | chr1.4:15594228-15594247 | None:intergenic | 45.0% | |
ATGTCAGGAATGCTGCATTG+AGG | + | chr1.4:15593351-15593370 | None:intergenic | 45.0% | |
ATGTTGACCTCAAGACATGC+GGG | + | chr1.4:15594992-15595011 | None:intergenic | 45.0% | |
CAAAGGAGGCTTTACTGCAA+AGG | + | chr1.4:15592449-15592468 | None:intergenic | 45.0% | |
CTACCTCAACGTCCAATTGA+AGG | + | chr1.4:15594060-15594079 | None:intergenic | 45.0% | |
CTATGCTGAAAGAAGCTGTG+CGG | - | chr1.4:15594639-15594658 | MS.gene59143:intron | 45.0% | |
CTCCTACTTGCCATATCTGT+AGG | - | chr1.4:15594223-15594242 | MS.gene59143:intron | 45.0% | |
GAGAAACAGAACCAGATGTC+AGG | + | chr1.4:15593366-15593385 | None:intergenic | 45.0% | |
GCTTCCACTTCCATGTCAAA+TGG | + | chr1.4:15592742-15592761 | None:intergenic | 45.0% | |
GGTCAGTTGGTTAGTAAGAG+AGG | - | chr1.4:15595139-15595158 | MS.gene59143:intron | 45.0% | |
TAGCCTTCAATTGGACGTTG+AGG | - | chr1.4:15594054-15594073 | MS.gene59143:intron | 45.0% | |
TAGTAACATTGCCTGAAGCC+TGG | + | chr1.4:15595511-15595530 | None:intergenic | 45.0% | |
TATTTCTTGGCGAAGGAGGA+TGG | - | chr1.4:15592763-15592782 | MS.gene59143:intron | 45.0% | |
TGCTCCGTGTTTACGTTTGT+TGG | - | chr1.4:15593784-15593803 | MS.gene59143:CDS | 45.0% | |
! | ACGTTTGTTGGATAAGTGGG+CGG | - | chr1.4:15593796-15593815 | MS.gene59143:CDS | 45.0% |
! | AGCTTATTTCTTGGCGAAGG+AGG | - | chr1.4:15592759-15592778 | MS.gene59143:intron | 45.0% |
! | GGAAGCTTATTTCTTGGCGA+AGG | - | chr1.4:15592756-15592775 | MS.gene59143:intron | 45.0% |
!! | TTTTTCCCCAGGTTGAGACT+AGG | - | chr1.4:15594501-15594520 | MS.gene59143:intron | 45.0% |
AGAGTCCTAGTCTCAACCTG+GGG | + | chr1.4:15594509-15594528 | None:intergenic | 50.0% | |
CAAGAGTCCTAGTCTCAACC+TGG | + | chr1.4:15594511-15594530 | None:intergenic | 50.0% | |
GACTAGGACTCTTGAGGAAG+TGG | - | chr1.4:15594517-15594536 | MS.gene59143:intron | 50.0% | |
GATATGGCAAGTAGGAGTGG+AGG | + | chr1.4:15594220-15594239 | None:intergenic | 50.0% | |
GGCCACCATTCCATTTGACA+TGG | - | chr1.4:15592729-15592748 | MS.gene59143:intron | 50.0% | |
GGTTGAGACTAGGACTCTTG+AGG | - | chr1.4:15594511-15594530 | MS.gene59143:intron | 50.0% | |
TGGCTCTTGCAGAAGATGCT+GGG | - | chr1.4:15592503-15592522 | MS.gene59143:intron | 50.0% | |
TTTCTCTTGGATACTGGCCG+AGG | - | chr1.4:15593380-15593399 | MS.gene59143:intron | 50.0% | |
! | AAGCTGTGCGGTTGGTCAAT+GGG | - | chr1.4:15594651-15594670 | MS.gene59143:intron | 50.0% |
! | CTTAAAGTTGGAAGGCGCAC+CGG | - | chr1.4:15595917-15595936 | MS.gene59143:CDS | 50.0% |
! | TTGGCTCTTGCAGAAGATGC+TGG | - | chr1.4:15592502-15592521 | MS.gene59143:intron | 50.0% |
AAGGAGGATGGCATCGTTGC+TGG | - | chr1.4:15592775-15592794 | MS.gene59143:CDS | 55.0% | |
AATGTGGCCCGCATGTCTTG+AGG | - | chr1.4:15594982-15595001 | MS.gene59143:intron | 55.0% | |
ATGGCAAGTAGGAGTGGAGG+AGG | + | chr1.4:15594217-15594236 | None:intergenic | 55.0% | |
CAAGACATGCGGGCCACATT+TGG | + | chr1.4:15594982-15595001 | None:intergenic | 55.0% | |
CATGATATGGCGGTCCATGC+TGG | - | chr1.4:15594434-15594453 | MS.gene59143:intron | 55.0% | |
GCAGAAGATGCTGGGGATCT+AGG | - | chr1.4:15592511-15592530 | MS.gene59143:intron | 55.0% | |
GCTGAAAGAAGCTGTGCGGT+TGG | - | chr1.4:15594643-15594662 | MS.gene59143:intron | 55.0% | |
GGCTCTTGCAGAAGATGCTG+GGG | - | chr1.4:15592504-15592523 | MS.gene59143:intron | 55.0% | |
TGGCAAGTAGGAGTGGAGGA+GGG | + | chr1.4:15594216-15594235 | None:intergenic | 55.0% | |
! | GAAGCTGTGCGGTTGGTCAA+TGG | - | chr1.4:15594650-15594669 | MS.gene59143:intron | 55.0% |
GCAAGTAGGAGTGGAGGAGG+GGG | + | chr1.4:15594214-15594233 | None:intergenic | 60.0% | |
GGCAAGTAGGAGTGGAGGAG+GGG | + | chr1.4:15594215-15594234 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 15592403 | 15595949 | 15592403 | ID=MS.gene59143 |
chr1.4 | mRNA | 15592403 | 15595949 | 15592403 | ID=MS.gene59143.t1;Parent=MS.gene59143 |
chr1.4 | exon | 15595820 | 15595949 | 15595820 | ID=MS.gene59143.t1.exon1;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15595820 | 15595949 | 15595820 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15595506 | 15595639 | 15595506 | ID=MS.gene59143.t1.exon2;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15595506 | 15595639 | 15595506 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15595358 | 15595421 | 15595358 | ID=MS.gene59143.t1.exon3;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15595358 | 15595421 | 15595358 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15595161 | 15595243 | 15595161 | ID=MS.gene59143.t1.exon4;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15595161 | 15595243 | 15595161 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15594535 | 15594618 | 15594535 | ID=MS.gene59143.t1.exon5;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15594535 | 15594618 | 15594535 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15594277 | 15594429 | 15594277 | ID=MS.gene59143.t1.exon6;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15594277 | 15594429 | 15594277 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15593664 | 15593840 | 15593664 | ID=MS.gene59143.t1.exon7;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15593664 | 15593840 | 15593664 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15592773 | 15592840 | 15592773 | ID=MS.gene59143.t1.exon8;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15592773 | 15592840 | 15592773 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
chr1.4 | exon | 15592403 | 15592499 | 15592403 | ID=MS.gene59143.t1.exon9;Parent=MS.gene59143.t1 |
chr1.4 | CDS | 15592403 | 15592499 | 15592403 | ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1 |
Gene Sequence |
Protein sequence |