AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59143


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59143.t1 MTR_1g030750 99.088 329 3 0 1 329 46 374 0.0 668
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59143.t1 AT2G01350 81.587 315 58 0 15 329 13 327 0.0 544
MS.gene59143.t1 AT2G01350 81.587 315 58 0 15 329 34 348 0.0 543
MS.gene59143.t1 AT2G01350 80.635 315 55 1 15 329 34 342 0.0 529
MS.gene59143.t1 AT2G01350 82.562 281 49 0 49 329 1 281 6.92e-175 486

Find 74 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAATAATGCTGGATAATA+TGG 0.220541 1.4:-15593747 MS.gene59143:CDS
TGAGGTTGATCCTTCTTTAA+AGG 0.228429 1.4:-15595505 MS.gene59143:intron
TTCCTTGTATAGGTATTAAT+TGG 0.238723 1.4:-15594419 MS.gene59143:intron
CTACAGTTTGGAAAAGTTAA+TGG 0.303618 1.4:-15595357 MS.gene59143:intron
GTGGAGTAACCTACATTTCT+AGG 0.319411 1.4:-15592772 MS.gene59143:intron
AAAAGCTGTTGACCTGTATC+TGG 0.332775 1.4:-15594306 MS.gene59143:CDS
GCAGAAGATGCTGGGGATCT+AGG 0.339591 1.4:-15595819 MS.gene59143:intron
AAGGAGGATGGCATCGTTGC+TGG 0.343013 1.4:-15595555 MS.gene59143:CDS
GGAAGTGGAAGCTTATTTCT+TGG 0.353991 1.4:-15595580 MS.gene59143:CDS
TGCTCCGTGTTTACGTTTGT+TGG 0.360433 1.4:-15594546 MS.gene59143:CDS
CCTCAAAATTGATACTGAAT+TGG 0.380529 1.4:-15592438 MS.gene59143:CDS
TCAACATCTCCGTTTGATAA+AGG 0.380628 1.4:+15593719 None:intergenic
ATAGATACAGTACATAAAAT+CGG 0.383450 1.4:-15592800 MS.gene59143:CDS
GTACATAAAGGACTACAGTT+TGG 0.396949 1.4:-15595369 MS.gene59143:CDS
ATATCATAATCAAGCTCTTC+CGG 0.398861 1.4:+15592394 None:intergenic
GCATCCTACTTATGATTTGA+AGG 0.401374 1.4:-15595862 MS.gene59143:CDS
TATTTGTGAATCCAGGCTTC+AGG 0.405459 1.4:-15592833 MS.gene59143:intron
TTCTTTAACTCGAATAATGC+TGG 0.425179 1.4:-15593756 MS.gene59143:CDS
TTGGCTCTTGCAGAAGATGC+TGG 0.429505 1.4:-15595828 MS.gene59143:CDS
GAAGCTGTGCGGTTGGTCAA+TGG 0.438267 1.4:-15593680 MS.gene59143:CDS
TTTGAAGGGCATTATAAAGT+TGG 0.445902 1.4:-15595847 MS.gene59143:CDS
AAGCTGTGCGGTTGGTCAAT+GGG 0.445964 1.4:-15593679 MS.gene59143:CDS
AGCATCGCCTGCATATATAT+TGG 0.446995 1.4:-15594582 MS.gene59143:CDS
ACTGAATTGGCGCTTAAAGT+TGG 0.451185 1.4:-15592425 MS.gene59143:CDS
GTTTACGTTTGTTGGATAAG+TGG 0.454989 1.4:-15594538 MS.gene59143:CDS
TTGCTTCATACCTTTAAAGA+AGG 0.458741 1.4:+15595495 None:intergenic
GCTTCCACTTCCATGTCAAA+TGG 0.464861 1.4:+15595591 None:intergenic
AAAACTTTACCTAGAAATGT+AGG 0.470300 1.4:+15592763 None:intergenic
TTTACGTTTGTTGGATAAGT+GGG 0.473302 1.4:-15594537 MS.gene59143:CDS
CTAGTCTCCAATATATATGC+AGG 0.474951 1.4:+15594575 None:intergenic
CTACCTCAACGTCCAATTGA+AGG 0.479255 1.4:+15594273 None:intergenic
CTTGTATAGGTATTAATTGG+TGG 0.481768 1.4:-15594416 MS.gene59143:intron
CATCCTACTTATGATTTGAA+GGG 0.486121 1.4:-15595861 MS.gene59143:CDS
GACTAGGACTCTTGAGGAAG+TGG 0.488980 1.4:-15593813 MS.gene59143:CDS
TGGCTCTTGCAGAAGATGCT+GGG 0.489155 1.4:-15595827 MS.gene59143:CDS
TGCAGAGATGATATTTAATG+AGG 0.494921 1.4:-15595523 MS.gene59143:CDS
TAACATTGTTGTAGCTGAAA+GGG 0.499902 1.4:-15595211 MS.gene59143:CDS
ATGGTTGTACCTTTATCAAA+CGG 0.511127 1.4:-15593728 MS.gene59143:CDS
GATAATCATATATCAACAGC+TGG 0.512224 1.4:-15594347 MS.gene59143:CDS
CATTCCATTTGACATGGAAG+TGG 0.517963 1.4:-15595595 MS.gene59143:CDS
ATAACATTGTTGTAGCTGAA+AGG 0.525165 1.4:-15595212 MS.gene59143:CDS
AGCTTATTTCTTGGCGAAGG+AGG 0.525562 1.4:-15595571 MS.gene59143:CDS
AATTGGCGCTTAAAGTTGGA+AGG 0.528440 1.4:-15592421 MS.gene59143:CDS
TAGATACAGTACATAAAATC+GGG 0.531386 1.4:-15592799 MS.gene59143:CDS
TATAGGTGATATAACATGCT+TGG 0.532134 1.4:-15595622 MS.gene59143:intron
CTTTGAAATATTAGGTGGAG+TGG 0.532195 1.4:-15595413 MS.gene59143:intron
CACTTCCATGTCAAATGGAA+TGG 0.532228 1.4:+15595596 None:intergenic
TGGAGGACGAAATCATAGAA+TGG 0.532624 1.4:-15594396 MS.gene59143:CDS
TATTTCTTGGCGAAGGAGGA+TGG 0.532732 1.4:-15595567 MS.gene59143:CDS
GGAGGACGAAATCATAGAAT+GGG 0.538882 1.4:-15594395 MS.gene59143:CDS
CTTAAAGTTGGAAGGCGCAC+CGG 0.542235 1.4:-15592413 MS.gene59143:CDS
AACTTTATGCAGAGGATGAG+TGG 0.553734 1.4:-15595180 MS.gene59143:CDS
ATGCCCTTCAAATCATAAGT+AGG 0.554178 1.4:+15595858 None:intergenic
TAGAATGGGTTTGTTTGACA+TGG 0.558081 1.4:-15594381 MS.gene59143:CDS
GGAAGCTTATTTCTTGGCGA+AGG 0.572983 1.4:-15595574 MS.gene59143:CDS
AAATCATAAGTAGGATGCAA+AGG 0.574927 1.4:+15595867 None:intergenic
GTATAGGTATTAATTGGTGG+AGG 0.583098 1.4:-15594413 MS.gene59143:intron
GGCTCTTGCAGAAGATGCTG+GGG 0.588390 1.4:-15595826 MS.gene59143:CDS
TAGCCTTCAATTGGACGTTG+AGG 0.593893 1.4:-15594276 MS.gene59143:intron
TGGCATTGCAACTTTAACCA+AGG 0.597429 1.4:-15595160 MS.gene59143:intron
GGCCACCATTCCATTTGACA+TGG 0.598004 1.4:-15595601 MS.gene59143:CDS
TTCCATGTCAAATGGAATGG+TGG 0.599989 1.4:+15595599 None:intergenic
CAAAGGAGGCTTTACTGCAA+AGG 0.601034 1.4:+15595884 None:intergenic
GCTGAAAGAAGCTGTGCGGT+TGG 0.613125 1.4:-15593687 MS.gene59143:CDS
CAATGGGAGATTTGAAACTG+AGG 0.629104 1.4:-15593663 MS.gene59143:intron
GGTTGAGACTAGGACTCTTG+AGG 0.629180 1.4:-15593819 MS.gene59143:CDS
TAGTGCTAAACTTTATGCAG+AGG 0.631286 1.4:-15595188 MS.gene59143:CDS
GTACATAAAATCGGGCAAAG+TGG 0.642028 1.4:-15592791 MS.gene59143:CDS
AAGGACTCGTATGAGATCGT+CGG 0.643661 1.4:+15595903 None:intergenic
TCATAAGTAGGATGCAAAGG+AGG 0.644964 1.4:+15595870 None:intergenic
ACGTTTGTTGGATAAGTGGG+CGG 0.647258 1.4:-15594534 MS.gene59143:intron
TTATCCAACAAACGTAAACA+CGG 0.659218 1.4:+15594542 None:intergenic
AATCATATATCAACAGCTGG+AGG 0.664583 1.4:-15594344 MS.gene59143:CDS
CTATGCTGAAAGAAGCTGTG+CGG 0.758489 1.4:-15593691 MS.gene59143:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAATAAAATAAAAA+TGG + chr1.4:15594166-15594185 None:intergenic 0.0%
!! TATAAAAAAATATAAATAAA+TGG + chr1.4:15593860-15593879 None:intergenic 0.0%
!! AAAATTATTCATTAAGAATC+AGG + chr1.4:15594120-15594139 None:intergenic 15.0%
!! AAATTATTCATTAAGAATCA+GGG + chr1.4:15594119-15594138 None:intergenic 15.0%
!! ATATAATAATGAACAAATCA+CGG - chr1.4:15593564-15593583 MS.gene59143:intron 15.0%
!! TAATATTATAAACCATATGT+TGG - chr1.4:15595717-15595736 MS.gene59143:intron 15.0%
!! TATTGATAAAAAAATGAATG+AGG + chr1.4:15593547-15593566 None:intergenic 15.0%
!! TGATAAATATAAGATAACAA+TGG + chr1.4:15593684-15593703 None:intergenic 15.0%
!! TTAAGAAAATAAAAATACCT+TGG + chr1.4:15593190-15593209 None:intergenic 15.0%
!!! AAAATAGAAATTTTTTGTGA+AGG - chr1.4:15595214-15595233 MS.gene59143:CDS 15.0%
!!! TATCTAATCGTTTTTTTATT+TGG - chr1.4:15595377-15595396 MS.gene59143:CDS 15.0%
!!! TTATTTTGATATCTTGAATT+TGG - chr1.4:15595413-15595432 MS.gene59143:intron 15.0%
!! AAAATTTCATTGCTTTGATA+TGG - chr1.4:15595819-15595838 MS.gene59143:intron 20.0%
!! AAATTTCATTGCTTTGATAT+GGG - chr1.4:15595820-15595839 MS.gene59143:CDS 20.0%
!! ATAGATACAGTACATAAAAT+CGG - chr1.4:15595530-15595549 MS.gene59143:CDS 20.0%
!! ATATTGTATGATGTTTGTAA+AGG - chr1.4:15593236-15593255 MS.gene59143:intron 20.0%
!! ATGTATAAAAATGAAAGGAA+TGG + chr1.4:15593835-15593854 None:intergenic 20.0%
!! ATTGAATTGAAATGGTTAAA+AGG - chr1.4:15593314-15593333 MS.gene59143:intron 20.0%
!! TAACCACAAATATTATGATA+GGG + chr1.4:15592871-15592890 None:intergenic 20.0%
!! TTAACCACAAATATTATGAT+AGG + chr1.4:15592872-15592891 None:intergenic 20.0%
!! TTGTTGTGAAATCTATTAAA+GGG + chr1.4:15594189-15594208 None:intergenic 20.0%
!!! ATAAGAAATGTTTTGACTAT+AGG - chr1.4:15592691-15592710 MS.gene59143:intron 20.0%
!!! CAATTATATAAAGCTTTGTT+AGG + chr1.4:15594310-15594329 None:intergenic 20.0%
!!! CTAACAAAGCTTTATATAAT+TGG - chr1.4:15594308-15594327 MS.gene59143:CDS 20.0%
!!! GTTTGTAATTGATTTATGAA+AGG - chr1.4:15593055-15593074 MS.gene59143:intron 20.0%
! AAAACTTTACCTAGAAATGT+AGG + chr1.4:15595570-15595589 None:intergenic 25.0%
! AAAGAAGGAAAAGTTAGTTA+GGG - chr1.4:15595118-15595137 MS.gene59143:intron 25.0%
! AACGATTCACAGTTAATTAT+TGG - chr1.4:15593278-15593297 MS.gene59143:intron 25.0%
! AACTTAATTACGAAAGCAAA+TGG - chr1.4:15593015-15593034 MS.gene59143:intron 25.0%
! AATTCAGATTGAGTAAAAGA+TGG - chr1.4:15593618-15593637 MS.gene59143:intron 25.0%
! AATTCTTGACTTAATCATTG+AGG - chr1.4:15592890-15592909 MS.gene59143:intron 25.0%
! ACAATACATGTAGAAATTGA+AGG + chr1.4:15595640-15595659 None:intergenic 25.0%
! ATACCCTATCATAATATTTG+TGG - chr1.4:15592865-15592884 MS.gene59143:intron 25.0%
! GTTGTTGTGAAATCTATTAA+AGG + chr1.4:15594190-15594209 None:intergenic 25.0%
! TAGAAATAAAAACAGTGTGT+TGG + chr1.4:15594836-15594855 None:intergenic 25.0%
! TAGATACAGTACATAAAATC+GGG - chr1.4:15595531-15595550 MS.gene59143:CDS 25.0%
! TGGTCATGTATAAAAATGAA+AGG + chr1.4:15593840-15593859 None:intergenic 25.0%
! TTAAAATGCCATTAAATGGA+CGG + chr1.4:15594356-15594375 None:intergenic 25.0%
! TTAACCTGTATCGTATTATT+CGG - chr1.4:15594713-15594732 MS.gene59143:intron 25.0%
! TTCCTTGTATAGGTATTAAT+TGG - chr1.4:15593911-15593930 MS.gene59143:intron 25.0%
! TTTATTGAAACTGGAGAAAA+TGG + chr1.4:15595268-15595287 None:intergenic 25.0%
!! CAAAGCAATGAAATTTTGTA+GGG + chr1.4:15595816-15595835 None:intergenic 25.0%
!! CAATTCAGTATCAATTTTGA+GGG + chr1.4:15595894-15595913 None:intergenic 25.0%
!! TCAAAGCAATGAAATTTTGT+AGG + chr1.4:15595817-15595836 None:intergenic 25.0%
!! TCCATTTAATGGCATTTTAA+TGG - chr1.4:15594356-15594375 MS.gene59143:CDS 25.0%
!! TTTATCCTAAGAGAAGTTTT+AGG - chr1.4:15593452-15593471 MS.gene59143:intron 25.0%
!!! ACAGTTAATTATTGGTAATG+TGG - chr1.4:15593286-15593305 MS.gene59143:intron 25.0%
!!! AGTTAATTATTGGTAATGTG+GGG - chr1.4:15593288-15593307 MS.gene59143:intron 25.0%
!!! CAGTTAATTATTGGTAATGT+GGG - chr1.4:15593287-15593306 MS.gene59143:intron 25.0%
!!! GAGGATTACTTTGAAATATT+AGG - chr1.4:15592909-15592928 MS.gene59143:intron 25.0%
!!! GATTACTTTGAAATATTAGG+TGG - chr1.4:15592912-15592931 MS.gene59143:intron 25.0%
!!! GTAAGTGTTTTTATTGAAAC+TGG + chr1.4:15595277-15595296 None:intergenic 25.0%
!!! TATTGTTGATTTCCTTGTAT+AGG - chr1.4:15593901-15593920 MS.gene59143:intron 25.0%
AAATCATAAGTAGGATGCAA+AGG + chr1.4:15592466-15592485 None:intergenic 30.0%
AACAGACAGAAACAAAAACA+TGG + chr1.4:15594859-15594878 None:intergenic 30.0%
AACTTCTCTTAGGATAAATG+TGG + chr1.4:15593450-15593469 None:intergenic 30.0%
AAGCAAAGGAAGAATCAAAA+TGG + chr1.4:15595746-15595765 None:intergenic 30.0%
AGGTAATTCAAGGTTAAGAT+GGG + chr1.4:15594267-15594286 None:intergenic 30.0%
AGTAAGAGAGGATTATTAAG+AGG - chr1.4:15595151-15595170 MS.gene59143:intron 30.0%
ATAACATTGTTGTAGCTGAA+AGG - chr1.4:15593118-15593137 MS.gene59143:intron 30.0%
ATCTTCAGTTATTCATGTGT+AGG - chr1.4:15593087-15593106 MS.gene59143:intron 30.0%
ATGGTTGTACCTTTATCAAA+CGG - chr1.4:15594602-15594621 MS.gene59143:intron 30.0%
ATTCTCCTAAAACTTCTCTT+AGG + chr1.4:15593460-15593479 None:intergenic 30.0%
CACCAATTAATACCTATACA+AGG + chr1.4:15593916-15593935 None:intergenic 30.0%
CACTAATCTGACAAATTGTT+AGG + chr1.4:15593512-15593531 None:intergenic 30.0%
CATCCTACTTATGATTTGAA+GGG - chr1.4:15592469-15592488 MS.gene59143:CDS 30.0%
CATGAAACTAGAAGAAAGTT+TGG + chr1.4:15592544-15592563 None:intergenic 30.0%
CATTACAGCAGTATATTTCA+CGG + chr1.4:15595055-15595074 None:intergenic 30.0%
CCTCAAAATTGATACTGAAT+TGG - chr1.4:15595892-15595911 MS.gene59143:CDS 30.0%
CCTGTGAAAAAACATGATAT+AGG + chr1.4:15593715-15593734 None:intergenic 30.0%
CTACAGTTTGGAAAAGTTAA+TGG - chr1.4:15592973-15592992 MS.gene59143:intron 30.0%
CTTGTATAGGTATTAATTGG+TGG - chr1.4:15593914-15593933 MS.gene59143:intron 30.0%
GAAAGAAGGAAAAGTTAGTT+AGG - chr1.4:15595117-15595136 MS.gene59143:intron 30.0%
GAATTGAAATGGTTAAAAGG+AGG - chr1.4:15593317-15593336 MS.gene59143:intron 30.0%
GATAATCATATATCAACAGC+TGG - chr1.4:15593983-15594002 MS.gene59143:intron 30.0%
GCCATTAAAATGCCATTAAA+TGG + chr1.4:15594360-15594379 None:intergenic 30.0%
GTAAGAGAGGATTATTAAGA+GGG - chr1.4:15595152-15595171 MS.gene59143:intron 30.0%
GTTAAATGCATTTGTAGATC+TGG - chr1.4:15594407-15594426 MS.gene59143:CDS 30.0%
TAAAACAGTGACTAAAGCAA+AGG + chr1.4:15595760-15595779 None:intergenic 30.0%
TAACATTGTTGTAGCTGAAA+GGG - chr1.4:15593119-15593138 MS.gene59143:intron 30.0%
TAAGAAACAAACAAGTCCAA+AGG + chr1.4:15595354-15595373 None:intergenic 30.0%
TAAGAGAGGATTATTAAGAG+GGG - chr1.4:15595153-15595172 MS.gene59143:intron 30.0%
TATAGGTGATATAACATGCT+TGG - chr1.4:15592708-15592727 MS.gene59143:intron 30.0%
TCGAATAATGCTGGATAATA+TGG - chr1.4:15594583-15594602 MS.gene59143:CDS 30.0%
TGATATCTTGAATTTGGTTG+AGG - chr1.4:15595419-15595438 MS.gene59143:intron 30.0%
TGCAGAGATGATATTTAATG+AGG - chr1.4:15592807-15592826 MS.gene59143:CDS 30.0%
TGGGGAATATTGAATTGAAA+TGG - chr1.4:15593306-15593325 MS.gene59143:intron 30.0%
TGGTGATTTCAGAAATCATT+AGG + chr1.4:15593664-15593683 None:intergenic 30.0%
TGTTTGTAAAGGTTCTTGTA+AGG - chr1.4:15593247-15593266 MS.gene59143:intron 30.0%
TTATCCAACAAACGTAAACA+CGG + chr1.4:15593791-15593810 None:intergenic 30.0%
TTCTTTAACTCGAATAATGC+TGG - chr1.4:15594574-15594593 MS.gene59143:CDS 30.0%
TTTGTCATATTTGTGAATCC+AGG - chr1.4:15595490-15595509 MS.gene59143:intron 30.0%
! CCAATTCAGTATCAATTTTG+AGG + chr1.4:15595895-15595914 None:intergenic 30.0%
! GATGGAGATTTTGTACATAA+AGG - chr1.4:15592949-15592968 MS.gene59143:intron 30.0%
! GTGAATTTGATAGTTTCTGT+TGG - chr1.4:15595191-15595210 MS.gene59143:CDS 30.0%
! TCAAAATGGATTCCAACATA+TGG + chr1.4:15595732-15595751 None:intergenic 30.0%
! TTGCTTCATACCTTTAAAGA+AGG + chr1.4:15592838-15592857 None:intergenic 30.0%
! TTTACGTTTGTTGGATAAGT+GGG - chr1.4:15593793-15593812 MS.gene59143:CDS 30.0%
!! GTTTTTAGAAACTCACAAAC+CGG - chr1.4:15595782-15595801 MS.gene59143:intron 30.0%
!! TTTGAAGGGCATTATAAAGT+TGG - chr1.4:15592483-15592502 MS.gene59143:intron 30.0%
!! TTTTAACTACCCTACAGATA+TGG + chr1.4:15594236-15594255 None:intergenic 30.0%
!!! CCTATATCATGTTTTTTCAC+AGG - chr1.4:15593712-15593731 MS.gene59143:CDS 30.0%
AAAAGTTAGTTAGGGTCAGT+TGG - chr1.4:15595126-15595145 MS.gene59143:intron 35.0%
AAAATGGCTGCAATATAGAG+AGG + chr1.4:15594150-15594169 None:intergenic 35.0%
AAATGGCTGCAATATAGAGA+GGG + chr1.4:15594149-15594168 None:intergenic 35.0%
AAGACCGAATAATACGATAC+AGG + chr1.4:15594720-15594739 None:intergenic 35.0%
AATCATATATCAACAGCTGG+AGG - chr1.4:15593986-15594005 MS.gene59143:intron 35.0%
AATTTGACACGACCGTTATT+GGG - chr1.4:15595090-15595109 MS.gene59143:intron 35.0%
AGCAAAGATGAGGTAATTCA+AGG + chr1.4:15594277-15594296 None:intergenic 35.0%
AGTTAGTTAAGAACGTGAAG+AGG + chr1.4:15595465-15595484 None:intergenic 35.0%
ATGAGTTTACACTCCAAATG+TGG - chr1.4:15594966-15594985 MS.gene59143:intron 35.0%
ATGCCCTTCAAATCATAAGT+AGG + chr1.4:15592475-15592494 None:intergenic 35.0%
CGTGAAATATACTGCTGTAA+TGG - chr1.4:15595053-15595072 MS.gene59143:intron 35.0%
CTAGTCTCCAATATATATGC+AGG + chr1.4:15593758-15593777 None:intergenic 35.0%
CTTCTTTCTTACCCCAATAA+CGG + chr1.4:15595105-15595124 None:intergenic 35.0%
GAGGTAATTCAAGGTTAAGA+TGG + chr1.4:15594268-15594287 None:intergenic 35.0%
GCATCCTACTTATGATTTGA+AGG - chr1.4:15592468-15592487 MS.gene59143:CDS 35.0%
GCTATGCATCTTAAAGTGAT+TGG - chr1.4:15594378-15594397 MS.gene59143:CDS 35.0%
GGAGAAAAATAGCCTTCAAT+TGG - chr1.4:15594045-15594064 MS.gene59143:intron 35.0%
GTACATAAAGGACTACAGTT+TGG - chr1.4:15592961-15592980 MS.gene59143:intron 35.0%
GTATAGGTATTAATTGGTGG+AGG - chr1.4:15593917-15593936 MS.gene59143:intron 35.0%
TAGATCTGGTGTTCATGATA+TGG - chr1.4:15594421-15594440 MS.gene59143:intron 35.0%
TAGTGCTAAACTTTATGCAG+AGG - chr1.4:15593142-15593161 MS.gene59143:intron 35.0%
TCAACATCTCCGTTTGATAA+AGG + chr1.4:15594614-15594633 None:intergenic 35.0%
TCAGTTATTCATGTGTAGGA+CGG - chr1.4:15593091-15593110 MS.gene59143:intron 35.0%
TCTTTATTGAAGAGTAGCCT+CGG + chr1.4:15593400-15593419 None:intergenic 35.0%
TGGTTGTGTTATGTTTCATC+AGG - chr1.4:15593638-15593657 MS.gene59143:intron 35.0%
TTGTGAAGGAGAAATTCTCA+GGG - chr1.4:15595228-15595247 MS.gene59143:intron 35.0%
TTTGTGAAGGAGAAATTCTC+AGG - chr1.4:15595227-15595246 MS.gene59143:intron 35.0%
! ATACAGGTCAACAGCTTTTA+GGG + chr1.4:15594023-15594042 None:intergenic 35.0%
! ATTTTGTAGGGAAACAGTAC+CGG + chr1.4:15595804-15595823 None:intergenic 35.0%
! CTAGATTTTATGAAGTGCAG+TGG + chr1.4:15595597-15595616 None:intergenic 35.0%
! GTTTACGTTTGTTGGATAAG+TGG - chr1.4:15593792-15593811 MS.gene59143:CDS 35.0%
! TAGAATGGGTTTGTTTGACA+TGG - chr1.4:15593949-15593968 MS.gene59143:intron 35.0%
! TGAGGTTGATCCTTCTTTAA+AGG - chr1.4:15592825-15592844 MS.gene59143:intron 35.0%
! TGTCAAATTGATGACAACCA+AGG + chr1.4:15595079-15595098 None:intergenic 35.0%
!! AAAGCTTTGTTAGGCAGTTA+AGG + chr1.4:15594301-15594320 None:intergenic 35.0%
!! AAGCTTTAAGAAATGGACAG+TGG + chr1.4:15595320-15595339 None:intergenic 35.0%
!! AGAGAGGAAGCTTTAAGAAA+TGG + chr1.4:15595327-15595346 None:intergenic 35.0%
!! CTTTGAAATATTAGGTGGAG+TGG - chr1.4:15592917-15592936 MS.gene59143:intron 35.0%
!!! TCATGTTTTTTCACAGGCAA+TGG - chr1.4:15593718-15593737 MS.gene59143:CDS 35.0%
AAAAGCTGTTGACCTGTATC+TGG - chr1.4:15594024-15594043 MS.gene59143:intron 40.0%
AACTTTATGCAGAGGATGAG+TGG - chr1.4:15593150-15593169 MS.gene59143:intron 40.0%
AATGTTGACCTCAAGACATG+CGG + chr1.4:15594993-15595012 None:intergenic 40.0%
AATTGGCGCTTAAAGTTGGA+AGG - chr1.4:15595909-15595928 MS.gene59143:CDS 40.0%
ACTGAATTGGCGCTTAAAGT+TGG - chr1.4:15595905-15595924 MS.gene59143:CDS 40.0%
AGCATCGCCTGCATATATAT+TGG - chr1.4:15593748-15593767 MS.gene59143:CDS 40.0%
ATATACTGCTGTAATGGCCT+TGG - chr1.4:15595059-15595078 MS.gene59143:intron 40.0%
ATCTGGTGTTCATGATATGG+CGG - chr1.4:15594424-15594443 MS.gene59143:intron 40.0%
ATGTCTGTCCGTCCATTTAA+TGG - chr1.4:15594345-15594364 MS.gene59143:CDS 40.0%
ATTTGACACGACCGTTATTG+GGG - chr1.4:15595091-15595110 MS.gene59143:intron 40.0%
CAAGTCCAAAGGAAAAAGAG+AGG + chr1.4:15595343-15595362 None:intergenic 40.0%
CAATTTGACACGACCGTTAT+TGG - chr1.4:15595089-15595108 MS.gene59143:intron 40.0%
CACTTCCATGTCAAATGGAA+TGG + chr1.4:15592737-15592756 None:intergenic 40.0%
CAGTTAAGGAAGCAAAGATG+AGG + chr1.4:15594287-15594306 None:intergenic 40.0%
CAGTTATTCATGTGTAGGAC+GGG - chr1.4:15593092-15593111 MS.gene59143:intron 40.0%
CATTCCATTTGACATGGAAG+TGG - chr1.4:15592735-15592754 MS.gene59143:intron 40.0%
CCTTAGAAAGAATGCGTGAA+AGG + chr1.4:15594096-15594115 None:intergenic 40.0%
CCTTTCACGCATTCTTTCTA+AGG - chr1.4:15594093-15594112 MS.gene59143:intron 40.0%
CGTTATTGGGGTAAGAAAGA+AGG - chr1.4:15595103-15595122 MS.gene59143:intron 40.0%
GAACTAGTTGTTTACCAGCA+TGG + chr1.4:15594451-15594470 None:intergenic 40.0%
GCACAACTGGATCAGATAAA+AGG + chr1.4:15593428-15593447 None:intergenic 40.0%
GGAGGACGAAATCATAGAAT+GGG - chr1.4:15593935-15593954 MS.gene59143:intron 40.0%
GGATTATTAAGAGGGGATGT+AGG - chr1.4:15595160-15595179 MS.gene59143:intron 40.0%
GTACATAAAATCGGGCAAAG+TGG - chr1.4:15595539-15595558 MS.gene59143:CDS 40.0%
GTGGAGTAACCTACATTTCT+AGG - chr1.4:15595558-15595577 MS.gene59143:CDS 40.0%
GTGGAGTGGTCTAAAAATGA+TGG - chr1.4:15592931-15592950 MS.gene59143:intron 40.0%
TAGGATAAATGTGGCACAAC+TGG + chr1.4:15593441-15593460 None:intergenic 40.0%
TATTTGTGAATCCAGGCTTC+AGG - chr1.4:15595497-15595516 MS.gene59143:intron 40.0%
TCATAAGTAGGATGCAAAGG+AGG + chr1.4:15592463-15592482 None:intergenic 40.0%
TCCTACTTGCCATATCTGTA+GGG - chr1.4:15594224-15594243 MS.gene59143:intron 40.0%
TGCTGGTAAACAACTAGTTC+TGG - chr1.4:15594451-15594470 MS.gene59143:intron 40.0%
TGGAGGACGAAATCATAGAA+TGG - chr1.4:15593934-15593953 MS.gene59143:intron 40.0%
TGGCATTGCAACTTTAACCA+AGG - chr1.4:15593170-15593189 MS.gene59143:intron 40.0%
TTCCATGTCAAATGGAATGG+TGG + chr1.4:15592734-15592753 None:intergenic 40.0%
! AGCTTCCTCTCTTTTTCCTT+TGG - chr1.4:15595335-15595354 MS.gene59143:intron 40.0%
! CAATGGGAGATTTGAAACTG+AGG - chr1.4:15594667-15594686 MS.gene59143:intron 40.0%
! GAAACTGAGGTATTCATGAC+TGG - chr1.4:15594680-15594699 MS.gene59143:intron 40.0%
! GATACAGGTCAACAGCTTTT+AGG + chr1.4:15594024-15594043 None:intergenic 40.0%
! GGAAGTGGAAGCTTATTTCT+TGG - chr1.4:15592750-15592769 MS.gene59143:intron 40.0%
! GTAAGTTTGTGTTTTTCCCC+AGG - chr1.4:15594490-15594509 MS.gene59143:intron 40.0%
! GTTCTGTTTCTCTTGGATAC+TGG - chr1.4:15593374-15593393 MS.gene59143:intron 40.0%
! TTGATATGGGTTTTCTGCAG+TGG - chr1.4:15595833-15595852 MS.gene59143:CDS 40.0%
!! ACATCTGGTTCTGTTTCTCT+TGG - chr1.4:15593367-15593386 MS.gene59143:intron 40.0%
!!! GGCTATTTTTCTCCAGATAC+AGG + chr1.4:15594039-15594058 None:intergenic 40.0%
AAGAGTCCTAGTCTCAACCT+GGG + chr1.4:15594510-15594529 None:intergenic 45.0%
AAGGACTCGTATGAGATCGT+CGG + chr1.4:15592430-15592449 None:intergenic 45.0%
AATGCAGCATTCCTGACATC+TGG - chr1.4:15593352-15593371 MS.gene59143:intron 45.0%
ACAGATATGGCAAGTAGGAG+TGG + chr1.4:15594223-15594242 None:intergenic 45.0%
ACCCTACAGATATGGCAAGT+AGG + chr1.4:15594228-15594247 None:intergenic 45.0%
ATGTCAGGAATGCTGCATTG+AGG + chr1.4:15593351-15593370 None:intergenic 45.0%
ATGTTGACCTCAAGACATGC+GGG + chr1.4:15594992-15595011 None:intergenic 45.0%
CAAAGGAGGCTTTACTGCAA+AGG + chr1.4:15592449-15592468 None:intergenic 45.0%
CTACCTCAACGTCCAATTGA+AGG + chr1.4:15594060-15594079 None:intergenic 45.0%
CTATGCTGAAAGAAGCTGTG+CGG - chr1.4:15594639-15594658 MS.gene59143:intron 45.0%
CTCCTACTTGCCATATCTGT+AGG - chr1.4:15594223-15594242 MS.gene59143:intron 45.0%
GAGAAACAGAACCAGATGTC+AGG + chr1.4:15593366-15593385 None:intergenic 45.0%
GCTTCCACTTCCATGTCAAA+TGG + chr1.4:15592742-15592761 None:intergenic 45.0%
GGTCAGTTGGTTAGTAAGAG+AGG - chr1.4:15595139-15595158 MS.gene59143:intron 45.0%
TAGCCTTCAATTGGACGTTG+AGG - chr1.4:15594054-15594073 MS.gene59143:intron 45.0%
TAGTAACATTGCCTGAAGCC+TGG + chr1.4:15595511-15595530 None:intergenic 45.0%
TATTTCTTGGCGAAGGAGGA+TGG - chr1.4:15592763-15592782 MS.gene59143:intron 45.0%
TGCTCCGTGTTTACGTTTGT+TGG - chr1.4:15593784-15593803 MS.gene59143:CDS 45.0%
! ACGTTTGTTGGATAAGTGGG+CGG - chr1.4:15593796-15593815 MS.gene59143:CDS 45.0%
! AGCTTATTTCTTGGCGAAGG+AGG - chr1.4:15592759-15592778 MS.gene59143:intron 45.0%
! GGAAGCTTATTTCTTGGCGA+AGG - chr1.4:15592756-15592775 MS.gene59143:intron 45.0%
!! TTTTTCCCCAGGTTGAGACT+AGG - chr1.4:15594501-15594520 MS.gene59143:intron 45.0%
AGAGTCCTAGTCTCAACCTG+GGG + chr1.4:15594509-15594528 None:intergenic 50.0%
CAAGAGTCCTAGTCTCAACC+TGG + chr1.4:15594511-15594530 None:intergenic 50.0%
GACTAGGACTCTTGAGGAAG+TGG - chr1.4:15594517-15594536 MS.gene59143:intron 50.0%
GATATGGCAAGTAGGAGTGG+AGG + chr1.4:15594220-15594239 None:intergenic 50.0%
GGCCACCATTCCATTTGACA+TGG - chr1.4:15592729-15592748 MS.gene59143:intron 50.0%
GGTTGAGACTAGGACTCTTG+AGG - chr1.4:15594511-15594530 MS.gene59143:intron 50.0%
TGGCTCTTGCAGAAGATGCT+GGG - chr1.4:15592503-15592522 MS.gene59143:intron 50.0%
TTTCTCTTGGATACTGGCCG+AGG - chr1.4:15593380-15593399 MS.gene59143:intron 50.0%
! AAGCTGTGCGGTTGGTCAAT+GGG - chr1.4:15594651-15594670 MS.gene59143:intron 50.0%
! CTTAAAGTTGGAAGGCGCAC+CGG - chr1.4:15595917-15595936 MS.gene59143:CDS 50.0%
! TTGGCTCTTGCAGAAGATGC+TGG - chr1.4:15592502-15592521 MS.gene59143:intron 50.0%
AAGGAGGATGGCATCGTTGC+TGG - chr1.4:15592775-15592794 MS.gene59143:CDS 55.0%
AATGTGGCCCGCATGTCTTG+AGG - chr1.4:15594982-15595001 MS.gene59143:intron 55.0%
ATGGCAAGTAGGAGTGGAGG+AGG + chr1.4:15594217-15594236 None:intergenic 55.0%
CAAGACATGCGGGCCACATT+TGG + chr1.4:15594982-15595001 None:intergenic 55.0%
CATGATATGGCGGTCCATGC+TGG - chr1.4:15594434-15594453 MS.gene59143:intron 55.0%
GCAGAAGATGCTGGGGATCT+AGG - chr1.4:15592511-15592530 MS.gene59143:intron 55.0%
GCTGAAAGAAGCTGTGCGGT+TGG - chr1.4:15594643-15594662 MS.gene59143:intron 55.0%
GGCTCTTGCAGAAGATGCTG+GGG - chr1.4:15592504-15592523 MS.gene59143:intron 55.0%
TGGCAAGTAGGAGTGGAGGA+GGG + chr1.4:15594216-15594235 None:intergenic 55.0%
! GAAGCTGTGCGGTTGGTCAA+TGG - chr1.4:15594650-15594669 MS.gene59143:intron 55.0%
GCAAGTAGGAGTGGAGGAGG+GGG + chr1.4:15594214-15594233 None:intergenic 60.0%
GGCAAGTAGGAGTGGAGGAG+GGG + chr1.4:15594215-15594234 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 15592403 15595949 15592403 ID=MS.gene59143
chr1.4 mRNA 15592403 15595949 15592403 ID=MS.gene59143.t1;Parent=MS.gene59143
chr1.4 exon 15595820 15595949 15595820 ID=MS.gene59143.t1.exon1;Parent=MS.gene59143.t1
chr1.4 CDS 15595820 15595949 15595820 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15595506 15595639 15595506 ID=MS.gene59143.t1.exon2;Parent=MS.gene59143.t1
chr1.4 CDS 15595506 15595639 15595506 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15595358 15595421 15595358 ID=MS.gene59143.t1.exon3;Parent=MS.gene59143.t1
chr1.4 CDS 15595358 15595421 15595358 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15595161 15595243 15595161 ID=MS.gene59143.t1.exon4;Parent=MS.gene59143.t1
chr1.4 CDS 15595161 15595243 15595161 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15594535 15594618 15594535 ID=MS.gene59143.t1.exon5;Parent=MS.gene59143.t1
chr1.4 CDS 15594535 15594618 15594535 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15594277 15594429 15594277 ID=MS.gene59143.t1.exon6;Parent=MS.gene59143.t1
chr1.4 CDS 15594277 15594429 15594277 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15593664 15593840 15593664 ID=MS.gene59143.t1.exon7;Parent=MS.gene59143.t1
chr1.4 CDS 15593664 15593840 15593664 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15592773 15592840 15592773 ID=MS.gene59143.t1.exon8;Parent=MS.gene59143.t1
chr1.4 CDS 15592773 15592840 15592773 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
chr1.4 exon 15592403 15592499 15592403 ID=MS.gene59143.t1.exon9;Parent=MS.gene59143.t1
chr1.4 CDS 15592403 15592499 15592403 ID=cds.MS.gene59143.t1;Parent=MS.gene59143.t1
Gene Sequence

>MS.gene59143

ATGTCAGCAACTGAAGTCACAAATCCGACGATCTCATACGAGTCCTTTGCAGTAAAGCCTCCTTTGCATCCTACTTATGATTTGAAGGGCATTATAAAGTTGGCTCTTGCAGAAGATGCTGGGGATCTAGGTTTACGTCCAAACTTTCTTCTAGTTTCATGCTATAGATGTCTTGTTTCTTTCTGAGTTTTATTTTTATTATTTCTATATTTTTTCTTTACTAAATAAACAGTATACTGATTGTGCTATTTTATTTATGTGACAGTTATATTGTGTGCATGACATTGAATAAGAAATGTTTTGACTATAGGTGATATAACATGCTTGGCCACCATTCCATTTGACATGGAAGTGGAAGCTTATTTCTTGGCGAAGGAGGATGGCATCGTTGCTGGAATTGCACTTGCAGAGATGATATTTAATGAGGTTGATCCTTCTTTAAAGGTATGAAGCAATGAGCATATACCCTATCATAATATTTGTGGTTAATTCTTGACTTAATCATTGAGGATTACTTTGAAATATTAGGTGGAGTGGTCTAAAAATGATGGAGATTTTGTACATAAAGGACTACAGTTTGGAAAAGTTAATGGTAAGATAATTTATTATTAAAACTTAATTACGAAAGCAAATGGAATTAAGTACGTTGTTAGTTTGTAATTGATTTATGAAAGGCTTCTATCAATCTTCAGTTATTCATGTGTAGGACGGGCACATAACATTGTTGTAGCTGAAAGGGTAGTGCTAAACTTTATGCAGAGGATGAGTGGCATTGCAACTTTAACCAAGGTATTTTTATTTTCTTAATATTTTTTCTGTTTTCTTCAAAATTAATATTGTATGATGTTTGTAAAGGTTCTTGTAAGGCTATTGAGAACGATTCACAGTTAATTATTGGTAATGTGGGGAATATTGAATTGAAATGGTTAAAAGGAGGAAGAGAGTCCTCAATGCAGCATTCCTGACATCTGGTTCTGTTTCTCTTGGATACTGGCCGAGGCTACTCTTCAATAAAGATTCAGCCTTTTATCTGATCCAGTTGTGCCACATTTATCCTAAGAGAAGTTTTAGGAGAATCTTTTCAAGTTGAAATATAACACATGACACCTAACAATTTGTCAGATTAGTGATGATTATATTGCCTCATTCATTTTTTTATCAATATAATAATGAACAAATCACGGTTACAAATAAGAAAAGTTGATTTATGTAATGAATTCAGATTGAGTAAAAGATGGTTGTGTTATGTTTCATCAGGCCTAATGATTTCTGAAATCACCATTGTTATCTTATATTTATCATTTGTTTTCCTATATCATGTTTTTTCACAGGCAATGGCAAATGCAGCATCGCCTGCATATATATTGGAGACTAGAAAAACTGCTCCGTGTTTACGTTTGTTGGATAAGTGGGCGGTCTGCACTCTGAACCATTCCTTTCATTTTTATACATGACCATTTATTTATATTTTTTTATATATCAAATTTTCTCAATAAACTATTGTTGATTTCCTTGTATAGGTATTAATTGGTGGAGGACGAAATCATAGAATGGGTTTGTTTGACATGGTTATGATAAAAGATAATCATATATCAACAGCTGGAGGTGTTACAAATGCCCTAAAAGCTGTTGACCTGTATCTGGAGAAAAATAGCCTTCAATTGGACGTTGAGGTAGTACTCTCTTTCATCCTTTCACGCATTCTTTCTAAGGCCCTGATTCTTAATGAATAATTTTCTCAATCCCTCTCTATATTGCAGCCATTTTTATTTTATTTTTTATTCCCTTTAATAGATTTCACAACAACTCCCCCTCCTCCACTCCTACTTGCCATATCTGTAGGGTAGTTAAAACTTAAATTCCCATCTTAACCTTGAATTACCTCATCTTTGCTTCCTTAACTGCCTAACAAAGCTTTATATAATTGGTCATATTCATTTACATGTCTGTCCGTCCATTTAATGGCATTTTAATGGCTATGCATCTTAAAGTGATTGGCATGAAGTTAAATGCATTTGTAGATCTGGTGTTCATGATATGGCGGTCCATGCTGGTAAACAACTAGTTCTGGCTGCAGATATAATATTGTAAGTTTGTGTTTTTCCCCAGGTTGAGACTAGGACTCTTGAGGAAGTGGAAGAAGTATTACAGTATGCATCTCAAACAAAGACTTCTTTAACTCGAATAATGCTGGATAATATGGTTGTACCTTTATCAAACGGAGATGTTGACATATCTATGCTGAAAGAAGCTGTGCGGTTGGTCAATGGGAGATTTGAAACTGAGGTATTCATGACTGGATTTGCTTCTTTAACCTGTATCGTATTATTCGGTCTTTTGTTGACTAAATGATTCAGAGTATGATTAAATTAGTCATTTACGTTCAAAAACATGAAGAGCACAACGAACATTCTCTCGAAGATTGTCTTTCCAACACACTGTTTTTATTTCTACCATGTTTTTGTTTCTGTCTGTTTAGAAACTAGCAAGTGTGTGCTTTGTTGTGCAAGCTTCTACAGAAATGAAATACTGTTCAGAAATATGTAAAGCATATTTTAAAATTATGAGTTTACACTCCAAATGTGGCCCGCATGTCTTGAGGTCAACATTCTATACAATAAACTAATTTTGTAATGAACTCGAAGCATGCCGTGAAATATACTGCTGTAATGGCCTTGGTTGTCATCAATTTGACACGACCGTTATTGGGGTAAGAAAGAAGGAAAAGTTAGTTAGGGTCAGTTGGTTAGTAAGAGAGGATTATTAAGAGGGGATGTAGGATCATTCTGTGAATTTGATAGTTTCTGTTGGAAAATAGAAATTTTTTGTGAAGGAGAAATTCTCAGGGAGAATGTTAATTCTCCATTTTCTCCAGTTTCAATAAAAACACTTACTTTCTTTTAATTCTTTCTCGCCACTGTCCATTTCTTAAAGCTTCCTCTCTTTTTCCTTTGGACTTGTTTGTTTCTTACATTATCTAATCGTTTTTTTATTTGGTAAATTTCAGACGTTATTTTGATATCTTGAATTTGGTTGAGGATGACTTTGTTAAATAACTTCCTCTTCACGTTCTTAACTAACTTCTATTTTGTCATATTTGTGAATCCAGGCTTCAGGCAATGTTACTATAGATACAGTACATAAAATCGGGCAAAGTGGAGTAACCTACATTTCTAGGTAAAGTTTTTCTTCCACTGCACTTCATAAAATCTAGTATCATAAAACATAATTTTTCCTTCAATTTCTACATGTATTGTTGAAAAATGCATTGTTGATTAATGTTAGAAATCTCATCATTAAATATATTGCTCTCATAATATTATAAACCATATGTTGGAATCCATTTTGATTCTTCCTTTGCTTTAGTCACTGTTTTAATGTTTTTAGAAACTCACAAACCGGTACTGTTTCCCTACAAAATTTCATTGCTTTGATATGGGTTTTCTGCAGTGGTTCTTTGACTCACTCAGTGAAAGCACTTGACATCTCCCTCAAAATTGATACTGAATTGGCGCTTAAAGTTGGAAGGCGCACCGGAAGAGCTTGA

Protein sequence

>MS.gene59143.t1

MSATEVTNPTISYESFAVKPPLHPTYDLKGIIKLALAEDAGDLGDITCLATIPFDMEVEAYFLAKEDGIVAGIALAEMIFNEVDPSLKVEWSKNDGDFVHKGLQFGKVNGRAHNIVVAERVVLNFMQRMSGIATLTKAMANAASPAYILETRKTAPCLRLLDKWAVLIGGGRNHRMGLFDMVMIKDNHISTAGGVTNALKAVDLYLEKNSLQLDVEVETRTLEEVEEVLQYASQTKTSLTRIMLDNMVVPLSNGDVDISMLKEAVRLVNGRFETEASGNVTIDTVHKIGQSGVTYISSGSLTHSVKALDISLKIDTELALKVGRRTGRA