Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59233.t1 | XP_024641057.1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 8.10E-128 | 466.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59233.t1 | Q8W487 | 58.8 | 194 | 74 | 3 | 63 | 254 | 60 | 249 | 1.8e-46 | 187.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59233.t1 | A0A396I021 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 5.9e-128 | 466.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene59233 | 0.811605 | 6.44E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59233 | MS.gene034255 | PPI |
| MS.gene59233 | MS.gene053230 | PPI |
| MS.gene59233 | MS.gene040269 | PPI |
| MS.gene000604 | MS.gene59233 | PPI |
| MS.gene59233 | MS.gene46105 | PPI |
| MS.gene59233 | MS.gene46104 | PPI |
| MS.gene59233 | MS.gene89319 | PPI |
| MS.gene59233 | MS.gene040271 | PPI |
| MS.gene055201 | MS.gene59233 | PPI |
| MS.gene59233 | MS.gene040272 | PPI |
| MS.gene59233 | MS.gene67544 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59233.t1 | MTR_5g080880 | 99.213 | 254 | 2 | 0 | 1 | 254 | 1 | 254 | 0.0 | 523 |
| MS.gene59233.t1 | MTR_5g080870 | 67.059 | 255 | 49 | 6 | 1 | 255 | 1 | 220 | 2.60e-110 | 321 |
| MS.gene59233.t1 | MTR_7g063520 | 48.000 | 250 | 111 | 5 | 8 | 254 | 20 | 253 | 2.86e-72 | 221 |
| MS.gene59233.t1 | MTR_4g006560 | 40.881 | 159 | 87 | 3 | 97 | 254 | 83 | 235 | 7.30e-31 | 115 |
| MS.gene59233.t1 | MTR_1g013120 | 32.083 | 240 | 143 | 9 | 24 | 254 | 4 | 232 | 9.71e-26 | 101 |
| MS.gene59233.t1 | MTR_5g093000 | 32.164 | 171 | 90 | 7 | 92 | 253 | 59 | 212 | 3.42e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59233.t1 | AT3G55605 | 50.000 | 270 | 106 | 8 | 1 | 254 | 1 | 257 | 2.42e-70 | 217 |
| MS.gene59233.t1 | AT5G05990 | 46.212 | 264 | 120 | 5 | 5 | 254 | 3 | 258 | 8.42e-70 | 216 |
| MS.gene59233.t1 | AT2G39795 | 53.299 | 197 | 86 | 3 | 60 | 254 | 57 | 249 | 1.79e-64 | 201 |
| MS.gene59233.t1 | AT5G02050 | 43.750 | 272 | 129 | 5 | 1 | 254 | 1 | 266 | 1.26e-58 | 187 |
| MS.gene59233.t1 | AT2G39790 | 35.249 | 261 | 138 | 6 | 1 | 253 | 1 | 238 | 2.04e-38 | 134 |
| MS.gene59233.t1 | AT1G15870 | 33.824 | 204 | 121 | 5 | 54 | 254 | 48 | 240 | 1.53e-26 | 103 |
| MS.gene59233.t1 | AT1G80720 | 32.105 | 190 | 115 | 6 | 68 | 254 | 10 | 188 | 1.02e-21 | 89.7 |
| MS.gene59233.t1 | AT1G80720 | 32.105 | 190 | 115 | 6 | 68 | 254 | 62 | 240 | 1.06e-21 | 90.9 |
| MS.gene59233.t1 | AT4G31930 | 32.632 | 190 | 114 | 7 | 68 | 253 | 53 | 232 | 7.21e-21 | 88.6 |
| MS.gene59233.t1 | AT4G32605 | 32.927 | 164 | 91 | 5 | 97 | 253 | 66 | 217 | 1.14e-17 | 79.7 |
Find 55 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTATCAACTATCTTAAA+TGG | 0.175868 | 5.2:-68700770 | None:intergenic |
| TCCACAAGTACTTAGAAATA+AGG | 0.241404 | 5.2:+68701534 | MS.gene59233:CDS |
| CACATGCCTGATTTGGTTAC+TGG | 0.250062 | 5.2:+68700854 | MS.gene59233:CDS |
| AGTGTTATTGTCTGATTTCC+TGG | 0.252098 | 5.2:-68700791 | None:intergenic |
| ATCAGACAATAACACTTAAA+AGG | 0.289378 | 5.2:+68700798 | MS.gene59233:CDS |
| TAAGAAGGATGGGCCCTCTT+TGG | 0.320568 | 5.2:+68700964 | MS.gene59233:CDS |
| TTATCAAGGTGAAGAAATTC+AGG | 0.325526 | 5.2:+68700823 | MS.gene59233:CDS |
| CCACAAGTACTTAGAAATAA+GGG | 0.328236 | 5.2:+68701535 | MS.gene59233:CDS |
| CTGTCGATAACAATCTCATC+TGG | 0.355760 | 5.2:-68701007 | None:intergenic |
| TGAGGTTCACATGCCTGATT+TGG | 0.368998 | 5.2:+68700847 | MS.gene59233:CDS |
| CCAAGTCAAGCACTTTCGTT+AGG | 0.373305 | 5.2:+68698251 | MS.gene59233:CDS |
| AGAAGTACATACTGAAAATC+TGG | 0.385204 | 5.2:-68701082 | None:intergenic |
| GCTCAGGAAACCGATGATTT+CGG | 0.391310 | 5.2:+68698460 | MS.gene59233:CDS |
| CCCTTATTTCTAAGTACTTG+TGG | 0.408675 | 5.2:-68701535 | None:intergenic |
| CGCCGCCGTCAATCGATACC+AGG | 0.411836 | 5.2:+68698336 | MS.gene59233:CDS |
| TTCAGTCAGTGTTTCTAAGA+AGG | 0.415683 | 5.2:+68700949 | MS.gene59233:CDS |
| TGCAAGAAATTTGTTGTGCT+TGG | 0.436674 | 5.2:-68701566 | None:intergenic |
| TGAAAATCTGGCCCGTCATA+AGG | 0.439441 | 5.2:-68701070 | None:intergenic |
| TCTTCTCCGTTTCATCGAAT+CGG | 0.447658 | 5.2:+68698426 | MS.gene59233:CDS |
| CAAGGATAGTAGAGAATACT+TGG | 0.453079 | 5.2:+68701604 | MS.gene59233:CDS |
| GATTATCAACTATCTTAAAT+GGG | 0.456111 | 5.2:-68700769 | None:intergenic |
| TCTTCACCAGTAACCAAATC+AGG | 0.463223 | 5.2:-68700860 | None:intergenic |
| TTAGAAACACTGACTGAAAG+TGG | 0.463235 | 5.2:-68700944 | None:intergenic |
| GTCAGTGTTTCTAAGAAGGA+TGG | 0.492712 | 5.2:+68700953 | MS.gene59233:CDS |
| GAGAAGAATATCGTCGGAGG+TGG | 0.494464 | 5.2:-68698410 | None:intergenic |
| ATCGGAAATCACTTGTGCTC+AGG | 0.496436 | 5.2:+68698444 | MS.gene59233:CDS |
| TTTAAGATAGTTGATAATCC+AGG | 0.504200 | 5.2:+68700773 | MS.gene59233:CDS |
| CGATCATCAAGATGATGATA+AGG | 0.505904 | 5.2:+68700886 | MS.gene59233:CDS |
| AGGTGAAGAAATTCAGGTTG+AGG | 0.510992 | 5.2:+68700829 | MS.gene59233:CDS |
| CAAGTCAAGCACTTTCGTTA+GGG | 0.512325 | 5.2:+68698252 | MS.gene59233:CDS |
| ATCTTAAATGGGAAATTGCT+CGG | 0.515748 | 5.2:-68700758 | None:intergenic |
| GAAAGCACGGCGCGATGACC+CGG | 0.517251 | 5.2:-68698313 | None:intergenic |
| TGATTTCCGATTCGATGAAA+CGG | 0.520694 | 5.2:-68698432 | None:intergenic |
| ACTTACAGCGCCGAAATCAT+CGG | 0.522056 | 5.2:-68698470 | None:intergenic |
| ACACTTAAAAGGACTTATCA+AGG | 0.527097 | 5.2:+68700809 | MS.gene59233:CDS |
| ATGAACAGATTCCTTATGAC+GGG | 0.541918 | 5.2:+68701059 | MS.gene59233:CDS |
| ATTGACGGCGGCGGAAAGCA+CGG | 0.549833 | 5.2:-68698326 | None:intergenic |
| TGAACCCTGGTATCGATTGA+CGG | 0.565956 | 5.2:-68698341 | None:intergenic |
| AGAAGAATATCGTCGGAGGT+GGG | 0.577026 | 5.2:-68698409 | None:intergenic |
| TGTCGATAACAATCTCATCT+GGG | 0.591480 | 5.2:-68701006 | None:intergenic |
| CCTAACGAAAGTGCTTGACT+TGG | 0.591991 | 5.2:-68698251 | None:intergenic |
| CTGGTATCGATTGACGGCGG+CGG | 0.595525 | 5.2:-68698335 | None:intergenic |
| TCAGTGTTTCTAAGAAGGAT+GGG | 0.595788 | 5.2:+68700954 | MS.gene59233:CDS |
| CACAAGTACTTAGAAATAAG+GGG | 0.598764 | 5.2:+68701536 | MS.gene59233:CDS |
| ACACAACTGAACTCCAAAGA+GGG | 0.618264 | 5.2:-68700977 | None:intergenic |
| GATGAACAGATTCCTTATGA+CGG | 0.641036 | 5.2:+68701058 | MS.gene59233:CDS |
| ATAGTAGAGAATACTTGGTG+TGG | 0.641539 | 5.2:+68701609 | MS.gene59233:CDS |
| AACACAACTGAACTCCAAAG+AGG | 0.648826 | 5.2:-68700978 | None:intergenic |
| GCCGCCGTCAATCGATACCA+GGG | 0.649914 | 5.2:+68698337 | MS.gene59233:CDS |
| ACAGAAGAAAAGTGAAACGT+AGG | 0.650656 | 5.2:-68698370 | None:intergenic |
| GAAACGGAGAAGAATATCGT+CGG | 0.655705 | 5.2:-68698416 | None:intergenic |
| ACGTAGGAACAAATGAACCC+TGG | 0.662093 | 5.2:-68698354 | None:intergenic |
| ACGGAGAAGAATATCGTCGG+AGG | 0.701354 | 5.2:-68698413 | None:intergenic |
| GCATGAGTACATGATCAACA+AGG | 0.729521 | 5.2:+68701586 | MS.gene59233:CDS |
| ACCCTGGTATCGATTGACGG+CGG | 0.780259 | 5.2:-68698338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACAAAAAATTGAAA+AGG | - | chr5.2:68700631-68700650 | None:intergenic | 10.0% |
| !!! | TAAAATTTAATTTTTCTGTT+TGG | - | chr5.2:68699146-68699165 | None:intergenic | 10.0% |
| !!! | TTTTTTACTCTATTAATTAA+TGG | + | chr5.2:68699974-68699993 | MS.gene59233:intron | 10.0% |
| !! | AAATGTTGAAAATTTGAATT+TGG | + | chr5.2:68700659-68700678 | MS.gene59233:intron | 15.0% |
| !! | GTTAAGGTTAAAAAAAATTA+TGG | - | chr5.2:68699324-68699343 | None:intergenic | 15.0% |
| !! | TAAATATGATTATCTTAGTT+TGG | + | chr5.2:68699543-68699562 | MS.gene59233:intron | 15.0% |
| !! | TTATTTATGAAGAAAGAATT+TGG | + | chr5.2:68699401-68699420 | MS.gene59233:intron | 15.0% |
| !!! | AAATGTTGAAAAAATGATTT+TGG | + | chr5.2:68700714-68700733 | MS.gene59233:intron | 15.0% |
| !!! | ATTTTCCAAGATAATTTTTT+TGG | - | chr5.2:68699932-68699951 | None:intergenic | 15.0% |
| !! | AGTAAAAATAAGTTATAAGC+TGG | - | chr5.2:68698626-68698645 | None:intergenic | 20.0% |
| !! | ATTATAATAAAAGACCTGTT+TGG | + | chr5.2:68698801-68698820 | MS.gene59233:intron | 20.0% |
| !! | CTTATTGAATTTGTAATGTT+TGG | - | chr5.2:68699030-68699049 | None:intergenic | 20.0% |
| !! | GATTATCAACTATCTTAAAT+GGG | - | chr5.2:68700772-68700791 | None:intergenic | 20.0% |
| !! | TAAATATGAATGACATACAA+AGG | - | chr5.2:68699179-68699198 | None:intergenic | 20.0% |
| !!! | AAAAAAATTATGGCTTTGTT+TGG | - | chr5.2:68699314-68699333 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTGGTTGATAT+AGG | + | chr5.2:68700724-68700743 | MS.gene59233:intron | 20.0% |
| !!! | AAATGATTTTGGTTGATATA+GGG | + | chr5.2:68700725-68700744 | MS.gene59233:intron | 20.0% |
| !!! | CAAGATTTTTAAAATAGACA+AGG | - | chr5.2:68699778-68699797 | None:intergenic | 20.0% |
| !!! | GTGATTGAATTTTTAGTTTA+TGG | - | chr5.2:68699227-68699246 | None:intergenic | 20.0% |
| !!! | TAATTGAAAGTATACAAACA+GGG | - | chr5.2:68701445-68701464 | None:intergenic | 20.0% |
| !!! | TTAATTGAAAGTATACAAAC+AGG | - | chr5.2:68701446-68701465 | None:intergenic | 20.0% |
| !!! | TTCAATTGTCTAATTTTTTC+CGG | + | chr5.2:68699685-68699704 | MS.gene59233:intron | 20.0% |
| ! | AAAATTAACAGTTACCAAAC+AGG | - | chr5.2:68698818-68698837 | None:intergenic | 25.0% |
| ! | AAGAAGATAGGATATTTAAC+AGG | + | chr5.2:68700434-68700453 | MS.gene59233:intron | 25.0% |
| ! | AAGAGCCAAAAAAATTATCT+TGG | + | chr5.2:68699924-68699943 | MS.gene59233:intron | 25.0% |
| ! | AATCCTTAAAATTAGTCAAG+TGG | + | chr5.2:68699949-68699968 | MS.gene59233:intron | 25.0% |
| ! | ACAAAAGACTACAAAACAAA+AGG | - | chr5.2:68700532-68700551 | None:intergenic | 25.0% |
| ! | AGAAAATTTAGTGAGAAACT+GGG | + | chr5.2:68699806-68699825 | MS.gene59233:intron | 25.0% |
| ! | ATCAGACAATAACACTTAAA+AGG | + | chr5.2:68700798-68700817 | MS.gene59233:CDS | 25.0% |
| ! | ATCATGAGTCTAATGAATTA+AGG | - | chr5.2:68698504-68698523 | None:intergenic | 25.0% |
| ! | ATCCTTAAAATTAGTCAAGT+GGG | + | chr5.2:68699950-68699969 | MS.gene59233:intron | 25.0% |
| ! | CAACAAGATAATCATTGTTA+AGG | - | chr5.2:68699340-68699359 | None:intergenic | 25.0% |
| ! | CATTGATATCAAGTTTCTAT+TGG | + | chr5.2:68700309-68700328 | MS.gene59233:intron | 25.0% |
| ! | GAAACTTGATATCAATGATA+AGG | - | chr5.2:68700306-68700325 | None:intergenic | 25.0% |
| ! | GGATTATCAACTATCTTAAA+TGG | - | chr5.2:68700773-68700792 | None:intergenic | 25.0% |
| ! | GTAATGTTTGGTAAAATTAG+CGG | - | chr5.2:68699018-68699037 | None:intergenic | 25.0% |
| ! | TAGAAAATTTAGTGAGAAAC+TGG | + | chr5.2:68699805-68699824 | MS.gene59233:intron | 25.0% |
| ! | TGATATCAATGATAAGGTAT+AGG | - | chr5.2:68700300-68700319 | None:intergenic | 25.0% |
| ! | TTAAATATCCTATCTTCTTC+CGG | - | chr5.2:68700433-68700452 | None:intergenic | 25.0% |
| ! | TTTATGAAGAAAGAATTTGG+CGG | + | chr5.2:68699404-68699423 | MS.gene59233:intron | 25.0% |
| ! | TTTCTAATGTTTGTGTAGTT+TGG | + | chr5.2:68699843-68699862 | MS.gene59233:intron | 25.0% |
| !! | ACATCAGTGTTGTTAAATAA+AGG | + | chr5.2:68701162-68701181 | MS.gene59233:intron | 25.0% |
| !! | ATATGATTATCTTAGTTTGG+AGG | + | chr5.2:68699546-68699565 | MS.gene59233:intron | 25.0% |
| !! | TCAATATTTTTCATGTCTCT+AGG | - | chr5.2:68701382-68701401 | None:intergenic | 25.0% |
| !!! | TAAGACATAAATTTGGTTTG+TGG | + | chr5.2:68698751-68698770 | MS.gene59233:intron | 25.0% |
| !!! | TTAAAACTTTTAGCTTACCA+TGG | + | chr5.2:68698690-68698709 | MS.gene59233:intron | 25.0% |
| !!! | TTATTTCTATGAGCTTATAG+CGG | + | chr5.2:68698853-68698872 | MS.gene59233:intron | 25.0% |
| !!! | TTTAAGATAGTTGATAATCC+AGG | + | chr5.2:68700773-68700792 | MS.gene59233:CDS | 25.0% |
| !!! | TTTTTCAATTGAGATTGCAA+GGG | - | chr5.2:68698936-68698955 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATTGAGATTGCA+AGG | - | chr5.2:68698937-68698956 | None:intergenic | 25.0% |
| AAAGATTATCTTTCGTGAGA+GGG | + | chr5.2:68699593-68699612 | MS.gene59233:intron | 30.0% | |
| AATGAGGTGTAGATTAAGTA+GGG | + | chr5.2:68699489-68699508 | MS.gene59233:intron | 30.0% | |
| ACACTTAAAAGGACTTATCA+AGG | + | chr5.2:68700809-68700828 | MS.gene59233:CDS | 30.0% | |
| ATAGCTTATAGCTTATAAGC+TGG | + | chr5.2:68698777-68698796 | MS.gene59233:intron | 30.0% | |
| ATCTGTTCATCAGAAAAATC+AGG | - | chr5.2:68701049-68701068 | None:intergenic | 30.0% | |
| ATCTTAAATGGGAAATTGCT+CGG | - | chr5.2:68700761-68700780 | None:intergenic | 30.0% | |
| ATTGATCAGAAAAACTCAAC+CGG | + | chr5.2:68698294-68698313 | MS.gene59233:CDS | 30.0% | |
| ATTTAACAGGTTGTACAATC+TGG | + | chr5.2:68700447-68700466 | MS.gene59233:intron | 30.0% | |
| CACAAGTACTTAGAAATAAG+GGG | + | chr5.2:68701536-68701555 | MS.gene59233:CDS | 30.0% | |
| CACGAAAGATAATCTTTAGT+TGG | - | chr5.2:68699590-68699609 | None:intergenic | 30.0% | |
| CCACAAGTACTTAGAAATAA+GGG | + | chr5.2:68701535-68701554 | MS.gene59233:CDS | 30.0% | |
| GAAAATGATTGTTACGAAAC+AGG | - | chr5.2:68698600-68698619 | None:intergenic | 30.0% | |
| GTATTAATATGCTCAGAATC+AGG | - | chr5.2:68700602-68700621 | None:intergenic | 30.0% | |
| TAAAGATTATCTTTCGTGAG+AGG | + | chr5.2:68699592-68699611 | MS.gene59233:intron | 30.0% | |
| TAATGAGGTGTAGATTAAGT+AGG | + | chr5.2:68699488-68699507 | MS.gene59233:intron | 30.0% | |
| TCCACAAGTACTTAGAAATA+AGG | + | chr5.2:68701534-68701553 | MS.gene59233:CDS | 30.0% | |
| TGATAAGGTATAGGAACAAA+AGG | - | chr5.2:68700291-68700310 | None:intergenic | 30.0% | |
| TGATATCAAGTTTCTATTGG+TGG | + | chr5.2:68700312-68700331 | MS.gene59233:intron | 30.0% | |
| TTATCAAGGTGAAGAAATTC+AGG | + | chr5.2:68700823-68700842 | MS.gene59233:CDS | 30.0% | |
| TTATGAAGAAAGAATTTGGC+GGG | + | chr5.2:68699405-68699424 | MS.gene59233:intron | 30.0% | |
| TTCTCAAAAAGGATTCGAAT+GGG | + | chr5.2:68699889-68699908 | MS.gene59233:intron | 30.0% | |
| TTGTTAAATAAAGGCTACAG+CGG | + | chr5.2:68701171-68701190 | MS.gene59233:intron | 30.0% | |
| TTTCTCAAAAAGGATTCGAA+TGG | + | chr5.2:68699888-68699907 | MS.gene59233:intron | 30.0% | |
| TTTGTGTAGTTTGGAAACTT+AGG | + | chr5.2:68699852-68699871 | MS.gene59233:intron | 30.0% | |
| ! | AACCCACTTGACTAATTTTA+AGG | - | chr5.2:68699955-68699974 | None:intergenic | 30.0% |
| ! | AGAAGTACATACTGAAAATC+TGG | - | chr5.2:68701085-68701104 | None:intergenic | 30.0% |
| ! | CAATTTTACCCTGTAATCTT+AGG | + | chr5.2:68698718-68698737 | MS.gene59233:intron | 30.0% |
| ! | TAACTGATAAACTAGCTTAG+AGG | - | chr5.2:68699276-68699295 | None:intergenic | 30.0% |
| ! | TTAACTTTCTGTTTGAGGTT+GGG | + | chr5.2:68700029-68700048 | MS.gene59233:intron | 30.0% |
| ! | TTTTACCTCGAGAGTTTTTT+CGG | + | chr5.2:68700398-68700417 | MS.gene59233:intron | 30.0% |
| ! | TTTTCAATTGAGATTGCAAG+GGG | - | chr5.2:68698935-68698954 | None:intergenic | 30.0% |
| !! | AATTTTCAGGGTTTTGTGTT+AGG | + | chr5.2:68699625-68699644 | MS.gene59233:intron | 30.0% |
| !! | TGGTTGGTAAGACATAAATT+TGG | + | chr5.2:68698744-68698763 | MS.gene59233:intron | 30.0% |
| !!! | AATTGTCTAATTTTTTCCGG+TGG | + | chr5.2:68699688-68699707 | MS.gene59233:intron | 30.0% |
| !!! | GCATTCAATGTTTTAATCCA+GGG | + | chr5.2:68701137-68701156 | MS.gene59233:intron | 30.0% |
| !!! | GGTGTGATTTTTTCTCAAAA+AGG | + | chr5.2:68699878-68699897 | MS.gene59233:intron | 30.0% |
| !!! | GTTTTAAAAAGCAGCTATAG+TGG | + | chr5.2:68701260-68701279 | MS.gene59233:intron | 30.0% |
| !!! | TGCATTCAATGTTTTAATCC+AGG | + | chr5.2:68701136-68701155 | MS.gene59233:intron | 30.0% |
| AAAAGGATTCGAATGGGAAA+AGG | + | chr5.2:68699895-68699914 | MS.gene59233:intron | 35.0% | |
| AAGATTATCTTTCGTGAGAG+GGG | + | chr5.2:68699594-68699613 | MS.gene59233:intron | 35.0% | |
| AAGTTAACTCTCAACAGAAC+AGG | - | chr5.2:68700016-68700035 | None:intergenic | 35.0% | |
| AATCTACACCTCATTACCAT+CGG | - | chr5.2:68699484-68699503 | None:intergenic | 35.0% | |
| ACAGAAGAAAAGTGAAACGT+AGG | - | chr5.2:68698373-68698392 | None:intergenic | 35.0% | |
| AGAAACTGGGTGTGATTATT+TGG | + | chr5.2:68699819-68699838 | MS.gene59233:intron | 35.0% | |
| ATGAACAGATTCCTTATGAC+GGG | + | chr5.2:68701059-68701078 | MS.gene59233:CDS | 35.0% | |
| CAAGGATAGTAGAGAATACT+TGG | + | chr5.2:68701604-68701623 | MS.gene59233:CDS | 35.0% | |
| CATCCAAATCCCTGTAAAAA+TGG | - | chr5.2:68701496-68701515 | None:intergenic | 35.0% | |
| CCAATCTAAATTTCAGATCG+CGG | - | chr5.2:68701331-68701350 | None:intergenic | 35.0% | |
| CGATCATCAAGATGATGATA+AGG | + | chr5.2:68700886-68700905 | MS.gene59233:CDS | 35.0% | |
| GAGAGTTAACTTTCTGTTTG+AGG | + | chr5.2:68700024-68700043 | MS.gene59233:intron | 35.0% | |
| GATGAACAGATTCCTTATGA+CGG | + | chr5.2:68701058-68701077 | MS.gene59233:CDS | 35.0% | |
| GCAGAATCTCATTCAAACAA+TGG | - | chr5.2:68701474-68701493 | None:intergenic | 35.0% | |
| GTAGTTTGGAAACTTAGGAA+CGG | + | chr5.2:68699857-68699876 | MS.gene59233:intron | 35.0% | |
| TGTCGATAACAATCTCATCT+GGG | - | chr5.2:68701009-68701028 | None:intergenic | 35.0% | |
| TTCGAAATCTCCAAATTGGA+AGG | - | chr5.2:68699753-68699772 | None:intergenic | 35.0% | |
| TTCTGTTTGGTAAAACACAG+CGG | - | chr5.2:68699133-68699152 | None:intergenic | 35.0% | |
| TTGATCAGAAAAACTCAACC+GGG | + | chr5.2:68698295-68698314 | MS.gene59233:CDS | 35.0% | |
| ! | AGTGTTATTGTCTGATTTCC+TGG | - | chr5.2:68700794-68700813 | None:intergenic | 35.0% |
| ! | AGTTCTATGTACTTGTTGAG+GGG | + | chr5.2:68700060-68700079 | MS.gene59233:intron | 35.0% |
| ! | AGTTGAGTTCATCTAGTTTC+AGG | + | chr5.2:68700225-68700244 | MS.gene59233:intron | 35.0% |
| ! | ATAGTAGAGAATACTTGGTG+TGG | + | chr5.2:68701609-68701628 | MS.gene59233:CDS | 35.0% |
| ! | CAGTTCTATGTACTTGTTGA+GGG | + | chr5.2:68700059-68700078 | MS.gene59233:intron | 35.0% |
| ! | CGCGATCTGAAATTTAGATT+GGG | + | chr5.2:68701329-68701348 | MS.gene59233:intron | 35.0% |
| ! | GTTAACTTTCTGTTTGAGGT+TGG | + | chr5.2:68700028-68700047 | MS.gene59233:intron | 35.0% |
| ! | GTTGAGTTCATCTAGTTTCA+GGG | + | chr5.2:68700226-68700245 | MS.gene59233:intron | 35.0% |
| ! | TAACTTTCTGTTTGAGGTTG+GGG | + | chr5.2:68700030-68700049 | MS.gene59233:intron | 35.0% |
| ! | TCAGCTATAAGCTAGCTTAT+AGG | + | chr5.2:68699065-68699084 | MS.gene59233:intron | 35.0% |
| ! | TCAGTGTTTCTAAGAAGGAT+GGG | + | chr5.2:68700954-68700973 | MS.gene59233:CDS | 35.0% |
| ! | TCAGTTCTATGTACTTGTTG+AGG | + | chr5.2:68700058-68700077 | MS.gene59233:intron | 35.0% |
| ! | TGATTTCCGATTCGATGAAA+CGG | - | chr5.2:68698435-68698454 | None:intergenic | 35.0% |
| ! | TTAGAAACACTGACTGAAAG+TGG | - | chr5.2:68700947-68700966 | None:intergenic | 35.0% |
| ! | TTCAGTCAGTGTTTCTAAGA+AGG | + | chr5.2:68700949-68700968 | MS.gene59233:CDS | 35.0% |
| ! | TTTTTACAGGGATTTGGATG+AGG | + | chr5.2:68701496-68701515 | MS.gene59233:intron | 35.0% |
| !! | AGTGAGACTTTGAAATGTCT+TGG | + | chr5.2:68699716-68699735 | MS.gene59233:intron | 35.0% |
| !! | CCCTTATTTCTAAGTACTTG+TGG | - | chr5.2:68701538-68701557 | None:intergenic | 35.0% |
| !! | GTGAGACTTTGAAATGTCTT+GGG | + | chr5.2:68699717-68699736 | MS.gene59233:intron | 35.0% |
| !! | TGAGACTTTGAAATGTCTTG+GGG | + | chr5.2:68699718-68699737 | MS.gene59233:intron | 35.0% |
| !! | TGCAAGAAATTTGTTGTGCT+TGG | - | chr5.2:68701569-68701588 | None:intergenic | 35.0% |
| !!! | AGGGGTTGGTTTTAATTTTC+AGG | + | chr5.2:68699612-68699631 | MS.gene59233:intron | 35.0% |
| !!! | ATTTTGGTTGATATAGGGTG+AGG | + | chr5.2:68700730-68700749 | MS.gene59233:intron | 35.0% |
| !!! | GAGATTCTGCCATTTTTACA+GGG | + | chr5.2:68701484-68701503 | MS.gene59233:intron | 35.0% |
| !!! | GGGGTTGGTTTTAATTTTCA+GGG | + | chr5.2:68699613-68699632 | MS.gene59233:intron | 35.0% |
| !!! | TCTAATTTTTTCCGGTGGTT+TGG | + | chr5.2:68699693-68699712 | MS.gene59233:intron | 35.0% |
| !!! | TGAGATTCTGCCATTTTTAC+AGG | + | chr5.2:68701483-68701502 | MS.gene59233:intron | 35.0% |
| !!! | TTTACCTCGAGAGTTTTTTC+GGG | + | chr5.2:68700399-68700418 | MS.gene59233:intron | 35.0% |
| AACACAACTGAACTCCAAAG+AGG | - | chr5.2:68700981-68701000 | None:intergenic | 40.0% | |
| AACCAGAGCCTAAGATTACA+GGG | - | chr5.2:68698729-68698748 | None:intergenic | 40.0% | |
| AAGTAGGGCTGTGGATTTAT+GGG | + | chr5.2:68699504-68699523 | MS.gene59233:intron | 40.0% | |
| ACACAACTGAACTCCAAAGA+GGG | - | chr5.2:68700980-68700999 | None:intergenic | 40.0% | |
| ACAGGTTGTACAATCTGGTT+TGG | + | chr5.2:68700452-68700471 | MS.gene59233:intron | 40.0% | |
| AGGGTAAAATTGAGAGACCA+TGG | - | chr5.2:68698710-68698729 | None:intergenic | 40.0% | |
| CAAGTCAAGCACTTTCGTTA+GGG | + | chr5.2:68698252-68698271 | MS.gene59233:CDS | 40.0% | |
| CTGTCGATAACAATCTCATC+TGG | - | chr5.2:68701010-68701029 | None:intergenic | 40.0% | |
| GAAACGGAGAAGAATATCGT+CGG | - | chr5.2:68698419-68698438 | None:intergenic | 40.0% | |
| GACTCTTTGACAGAGTTACT+CGG | - | chr5.2:68699444-68699463 | None:intergenic | 40.0% | |
| GCATGAGTACATGATCAACA+AGG | + | chr5.2:68701586-68701605 | MS.gene59233:CDS | 40.0% | |
| GCTTTCTCTTTCATCTTGTC+TGG | + | chr5.2:68700262-68700281 | MS.gene59233:intron | 40.0% | |
| GGAGTTCGAAATCTCCAAAT+TGG | - | chr5.2:68699757-68699776 | None:intergenic | 40.0% | |
| GTAGAATTCCGGAAGAAGAT+AGG | + | chr5.2:68700422-68700441 | MS.gene59233:intron | 40.0% | |
| TAACAACACTGATGTAACCC+TGG | - | chr5.2:68701157-68701176 | None:intergenic | 40.0% | |
| TAAGTAGGGCTGTGGATTTA+TGG | + | chr5.2:68699503-68699522 | MS.gene59233:intron | 40.0% | |
| TCTTCACCAGTAACCAAATC+AGG | - | chr5.2:68700863-68700882 | None:intergenic | 40.0% | |
| TCTTCTCCGTTTCATCGAAT+CGG | + | chr5.2:68698426-68698445 | MS.gene59233:CDS | 40.0% | |
| TGATGTTGCAGTTCAGATTG+TGG | + | chr5.2:68701399-68701418 | MS.gene59233:intron | 40.0% | |
| ! | AGCTAGCTTATAGCTGATAG+CGG | - | chr5.2:68699062-68699081 | None:intergenic | 40.0% |
| ! | CAGGTTGTACAATCTGGTTT+GGG | + | chr5.2:68700453-68700472 | MS.gene59233:intron | 40.0% |
| ! | CCGCGATCTGAAATTTAGAT+TGG | + | chr5.2:68701328-68701347 | MS.gene59233:intron | 40.0% |
| ! | GCAAACTTTTGCTGCAAGTT+TGG | + | chr5.2:68700343-68700362 | MS.gene59233:intron | 40.0% |
| ! | GTCAGTGTTTCTAAGAAGGA+TGG | + | chr5.2:68700953-68700972 | MS.gene59233:CDS | 40.0% |
| ! | GTTCTATGTACTTGTTGAGG+GGG | + | chr5.2:68700061-68700080 | MS.gene59233:intron | 40.0% |
| ! | TGCAGTTCAGATTGTGGTTT+TGG | + | chr5.2:68701405-68701424 | MS.gene59233:intron | 40.0% |
| ! | TTCTATGTACTTGTTGAGGG+GGG | + | chr5.2:68700062-68700081 | MS.gene59233:intron | 40.0% |
| !! | AGGTGAAGAAATTCAGGTTG+AGG | + | chr5.2:68700829-68700848 | MS.gene59233:CDS | 40.0% |
| !! | CTCTGTCAAAGAGTCGTTTT+TGG | + | chr5.2:68699449-68699468 | MS.gene59233:intron | 40.0% |
| !! | TTTCAGGGTTTTGTGTTAGG+AGG | + | chr5.2:68699628-68699647 | MS.gene59233:intron | 40.0% |
| !!! | CTGCCATTTTTACAGGGATT+TGG | + | chr5.2:68701490-68701509 | MS.gene59233:intron | 40.0% |
| !!! | GTTTTTTCGGGGTAGAATTC+CGG | + | chr5.2:68700411-68700430 | MS.gene59233:intron | 40.0% |
| !!! | TGCACTCTGGAGTTTTTCAA+GGG | + | chr5.2:68700100-68700119 | MS.gene59233:intron | 40.0% |
| !!! | TTACCTCGAGAGTTTTTTCG+GGG | + | chr5.2:68700400-68700419 | MS.gene59233:intron | 40.0% |
| !!! | TTGCACTCTGGAGTTTTTCA+AGG | + | chr5.2:68700099-68700118 | MS.gene59233:intron | 40.0% |
| AAAGAATTTGGCGGGAGATG+GGG | + | chr5.2:68699413-68699432 | MS.gene59233:intron | 45.0% | |
| AAAGTCTCACTCCAAACCAC+CGG | - | chr5.2:68699707-68699726 | None:intergenic | 45.0% | |
| ACGTAGGAACAAATGAACCC+TGG | - | chr5.2:68698357-68698376 | None:intergenic | 45.0% | |
| ACTCTCAACAGAACAGGTCA+AGG | - | chr5.2:68700010-68700029 | None:intergenic | 45.0% | |
| AGAAAGAATTTGGCGGGAGA+TGG | + | chr5.2:68699411-68699430 | MS.gene59233:intron | 45.0% | |
| AGAAGAATATCGTCGGAGGT+GGG | - | chr5.2:68698412-68698431 | None:intergenic | 45.0% | |
| ATCGGAAATCACTTGTGCTC+AGG | + | chr5.2:68698444-68698463 | MS.gene59233:CDS | 45.0% | |
| CAACCAGAGCCTAAGATTAC+AGG | - | chr5.2:68698730-68698749 | None:intergenic | 45.0% | |
| CCAAGTCAAGCACTTTCGTT+AGG | + | chr5.2:68698251-68698270 | MS.gene59233:CDS | 45.0% | |
| CTCTCAACAGAACAGGTCAA+GGG | - | chr5.2:68700009-68700028 | None:intergenic | 45.0% | |
| GAAAGAATTTGGCGGGAGAT+GGG | + | chr5.2:68699412-68699431 | MS.gene59233:intron | 45.0% | |
| GCTCAGGAAACCGATGATTT+CGG | + | chr5.2:68698460-68698479 | MS.gene59233:CDS | 45.0% | |
| GTGTAGATTAAGTAGGGCTG+TGG | + | chr5.2:68699495-68699514 | MS.gene59233:intron | 45.0% | |
| GTTAGGAGGATGTGGTACTT+TGG | + | chr5.2:68699642-68699661 | MS.gene59233:intron | 45.0% | |
| GTTTCAGGGTTACTTCGTCA+AGG | + | chr5.2:68700240-68700259 | MS.gene59233:intron | 45.0% | |
| GTTTCGTTCGCCTTCCAATT+TGG | + | chr5.2:68699740-68699759 | MS.gene59233:intron | 45.0% | |
| TACCCTGTAATCTTAGGCTC+TGG | + | chr5.2:68698724-68698743 | MS.gene59233:intron | 45.0% | |
| TATGCTCAGAATCAGGCACA+AGG | - | chr5.2:68700595-68700614 | None:intergenic | 45.0% | |
| TGAAAATCTGGCCCGTCATA+AGG | - | chr5.2:68701073-68701092 | None:intergenic | 45.0% | |
| TGAGGTTCACATGCCTGATT+TGG | + | chr5.2:68700847-68700866 | MS.gene59233:CDS | 45.0% | |
| TGCTATAGCACTTTGTGTGG+CGG | + | chr5.2:68701283-68701302 | MS.gene59233:intron | 45.0% | |
| TGTTGCTAACCTGTACTGCT+TGG | + | chr5.2:68701355-68701374 | MS.gene59233:intron | 45.0% | |
| TTATCTTTCGTGAGAGGGGT+TGG | + | chr5.2:68699598-68699617 | MS.gene59233:intron | 45.0% | |
| ! | ACTTACAGCGCCGAAATCAT+CGG | - | chr5.2:68698473-68698492 | None:intergenic | 45.0% |
| ! | CAGCTAGTTAGTCTCAGGTT+TGG | + | chr5.2:68700372-68700391 | MS.gene59233:intron | 45.0% |
| ! | CTGTAATCTTAGGCTCTGGT+TGG | + | chr5.2:68698728-68698747 | MS.gene59233:intron | 45.0% |
| ! | TGTAGCAGCTAGTTAGTCTC+AGG | + | chr5.2:68700367-68700386 | MS.gene59233:intron | 45.0% |
| !! | CACATGCCTGATTTGGTTAC+TGG | + | chr5.2:68700854-68700873 | MS.gene59233:CDS | 45.0% |
| !! | CCTAACGAAAGTGCTTGACT+TGG | - | chr5.2:68698254-68698273 | None:intergenic | 45.0% |
| !! | GGTTTTGTGTTAGGAGGATG+TGG | + | chr5.2:68699634-68699653 | MS.gene59233:intron | 45.0% |
| !! | GTTGTACAATCTGGTTTGGG+TGG | + | chr5.2:68700456-68700475 | MS.gene59233:intron | 45.0% |
| !! | GTTTTGAGCTTGGCATGGTT+AGG | + | chr5.2:68700486-68700505 | MS.gene59233:intron | 45.0% |
| !! | TCAAGTTTCTATTGGTGGCG+TGG | + | chr5.2:68700317-68700336 | MS.gene59233:intron | 45.0% |
| !! | TGAACCCTGGTATCGATTGA+CGG | - | chr5.2:68698344-68698363 | None:intergenic | 45.0% |
| !! | TGGTGCTATAGCACTTTGTG+TGG | + | chr5.2:68701280-68701299 | MS.gene59233:intron | 45.0% |
| !!! | AGTTTTTCAAGGGGTGCTTG+TGG | + | chr5.2:68700110-68700129 | MS.gene59233:intron | 45.0% |
| !!! | GCACTCTGGAGTTTTTCAAG+GGG | + | chr5.2:68700101-68700120 | MS.gene59233:intron | 45.0% |
| !!! | TGACAGTTTTGAGCTTGGCA+TGG | + | chr5.2:68700481-68700500 | MS.gene59233:intron | 45.0% |
| !!! | TGGTGTGACAGTTTTGAGCT+TGG | + | chr5.2:68700476-68700495 | MS.gene59233:intron | 45.0% |
| !!! | TTTTTGGTCTTGAGCACCGA+TGG | + | chr5.2:68699465-68699484 | MS.gene59233:intron | 45.0% |
| AAGAATTTGGCGGGAGATGG+GGG | + | chr5.2:68699414-68699433 | MS.gene59233:intron | 50.0% | |
| ACGGAGAAGAATATCGTCGG+AGG | - | chr5.2:68698416-68698435 | None:intergenic | 50.0% | |
| CTACCCCGAAAAAACTCTCG+AGG | - | chr5.2:68700406-68700425 | None:intergenic | 50.0% | |
| GAGAAGAATATCGTCGGAGG+TGG | - | chr5.2:68698413-68698432 | None:intergenic | 50.0% | |
| TAAGAAGGATGGGCCCTCTT+TGG | + | chr5.2:68700964-68700983 | MS.gene59233:CDS | 50.0% | |
| TTTCTCCTGCTGCAGTAGTG+AGG | + | chr5.2:68700179-68700198 | MS.gene59233:intron | 50.0% | |
| ! | TATGTACTTGTTGAGGGGGG+TGG | + | chr5.2:68700065-68700084 | MS.gene59233:intron | 50.0% |
| !! | CTTGAGCACCGATGGTAATG+AGG | + | chr5.2:68699473-68699492 | MS.gene59233:intron | 50.0% |
| !! | GTGTTGCTTCAGTTGCACTC+TGG | + | chr5.2:68700087-68700106 | MS.gene59233:intron | 50.0% |
| !! | TCTCTAGGACCAAGCAGTAC+AGG | - | chr5.2:68701367-68701386 | None:intergenic | 50.0% |
| GAGGTCTGAGTCTGACTGCT+TGG | + | chr5.2:68700198-68700217 | MS.gene59233:intron | 55.0% | |
| TCAGACCTCACTACTGCAGC+AGG | - | chr5.2:68700187-68700206 | None:intergenic | 55.0% | |
| !! | ACCCTGGTATCGATTGACGG+CGG | - | chr5.2:68698341-68698360 | None:intergenic | 55.0% |
| !! | GTTTCTATTGGTGGCGTGGC+AGG | + | chr5.2:68700321-68700340 | MS.gene59233:intron | 55.0% |
| ATTGACGGCGGCGGAAAGCA+CGG | - | chr5.2:68698329-68698348 | None:intergenic | 60.0% | |
| GCCGCCGTCAATCGATACCA+GGG | + | chr5.2:68698337-68698356 | MS.gene59233:CDS | 60.0% | |
| !! | CTGGTATCGATTGACGGCGG+CGG | - | chr5.2:68698338-68698357 | None:intergenic | 60.0% |
| CGCCGCCGTCAATCGATACC+AGG | + | chr5.2:68698336-68698355 | MS.gene59233:CDS | 65.0% | |
| ! | GAAAGCACGGCGCGATGACC+CGG | - | chr5.2:68698316-68698335 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 68698226 | 68701664 | 68698226 | ID=MS.gene59233 |
| chr5.2 | mRNA | 68698226 | 68701664 | 68698226 | ID=MS.gene59233.t1;Parent=MS.gene59233 |
| chr5.2 | exon | 68698226 | 68698486 | 68698226 | ID=MS.gene59233.t1.exon1;Parent=MS.gene59233.t1 |
| chr5.2 | CDS | 68698226 | 68698486 | 68698226 | ID=cds.MS.gene59233.t1;Parent=MS.gene59233.t1 |
| chr5.2 | exon | 68700746 | 68701092 | 68700746 | ID=MS.gene59233.t1.exon2;Parent=MS.gene59233.t1 |
| chr5.2 | CDS | 68700746 | 68701092 | 68700746 | ID=cds.MS.gene59233.t1;Parent=MS.gene59233.t1 |
| chr5.2 | exon | 68701505 | 68701664 | 68701505 | ID=MS.gene59233.t1.exon3;Parent=MS.gene59233.t1 |
| chr5.2 | CDS | 68701505 | 68701664 | 68701505 | ID=cds.MS.gene59233.t1;Parent=MS.gene59233.t1 |
| Gene Sequence |
| Protein sequence |
