Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59376.t1 | XP_003612012.1 | 91.8 | 305 | 25 | 0 | 1 | 305 | 1 | 305 | 1.80E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59376.t1 | Q8IUS5 | 25.6 | 281 | 154 | 11 | 52 | 296 | 93 | 354 | 2.9e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59376.t1 | G7KDL9 | 91.8 | 305 | 25 | 0 | 1 | 305 | 1 | 305 | 1.3e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene59376 | 0.808223 | 3.44E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene59376 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene59376 | 0.808873 | 2.50E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene59376 | 0.810109 | 1.36E-50 | -1.69E-46 |
| MS.gene052287 | MS.gene59376 | 0.833771 | 4.40E-56 | -1.69E-46 |
| MS.gene054184 | MS.gene59376 | 0.812972 | 3.24E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene59376 | 0.808095 | 3.66E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene59376 | 0.816694 | 4.85E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene59376 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene056772 | MS.gene59376 | 0.802625 | 5.13E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene59376 | 0.842934 | 1.91E-58 | -1.69E-46 |
| MS.gene057794 | MS.gene59376 | 0.807506 | 4.89E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene59376 | 0.813816 | 2.11E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene59376 | 0.818495 | 1.90E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene59376 | 0.821582 | 3.74E-53 | -1.69E-46 |
| MS.gene059974 | MS.gene59376 | 0.845364 | 4.25E-59 | -1.69E-46 |
| MS.gene060005 | MS.gene59376 | 0.819108 | 1.38E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene59376 | 0.849786 | 2.59E-60 | -1.69E-46 |
| MS.gene060476 | MS.gene59376 | 0.833556 | 4.98E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene59376 | 0.817213 | 3.71E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59376.t1 | MTR_5g020320 | 91.803 | 305 | 25 | 0 | 1 | 305 | 1 | 305 | 0.0 | 582 |
| MS.gene59376.t1 | MTR_5g020260 | 80.645 | 310 | 54 | 1 | 1 | 304 | 1 | 310 | 0.0 | 510 |
| MS.gene59376.t1 | MTR_5g020250 | 75.884 | 311 | 69 | 1 | 1 | 305 | 1 | 311 | 1.24e-176 | 491 |
| MS.gene59376.t1 | MTR_8g077290 | 62.460 | 309 | 107 | 1 | 1 | 300 | 1 | 309 | 1.48e-140 | 399 |
| MS.gene59376.t1 | MTR_8g077290 | 60.886 | 271 | 97 | 1 | 1 | 262 | 1 | 271 | 1.67e-116 | 337 |
| MS.gene59376.t1 | MTR_3g105290 | 37.319 | 276 | 163 | 5 | 26 | 297 | 32 | 301 | 5.28e-58 | 189 |
| MS.gene59376.t1 | MTR_5g064035 | 32.997 | 297 | 179 | 7 | 9 | 296 | 13 | 298 | 5.36e-53 | 176 |
| MS.gene59376.t1 | MTR_3g087050 | 35.254 | 295 | 173 | 7 | 9 | 296 | 15 | 298 | 5.36e-53 | 176 |
| MS.gene59376.t1 | MTR_2g008880 | 31.915 | 282 | 182 | 6 | 19 | 296 | 26 | 301 | 1.23e-47 | 162 |
| MS.gene59376.t1 | MTR_3g105290 | 38.278 | 209 | 120 | 4 | 26 | 231 | 32 | 234 | 3.93e-41 | 143 |
| MS.gene59376.t1 | MTR_8g090060 | 28.920 | 287 | 161 | 6 | 14 | 296 | 17 | 264 | 2.00e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59376.t1 | AT2G18360 | 54.693 | 309 | 130 | 1 | 1 | 299 | 1 | 309 | 6.59e-126 | 362 |
| MS.gene59376.t1 | AT4G36610 | 51.603 | 312 | 143 | 1 | 1 | 304 | 1 | 312 | 8.47e-119 | 344 |
| MS.gene59376.t1 | AT2G18360 | 51.103 | 272 | 123 | 1 | 1 | 262 | 1 | 272 | 1.35e-101 | 299 |
| MS.gene59376.t1 | AT1G78210 | 34.266 | 286 | 178 | 6 | 17 | 296 | 20 | 301 | 1.41e-55 | 182 |
| MS.gene59376.t1 | AT5G21950 | 35.461 | 282 | 177 | 4 | 18 | 296 | 22 | 301 | 1.57e-55 | 182 |
| MS.gene59376.t1 | AT5G21950 | 35.461 | 282 | 177 | 4 | 18 | 296 | 74 | 353 | 9.06e-55 | 182 |
| MS.gene59376.t1 | AT4G39955 | 32.653 | 294 | 180 | 6 | 13 | 298 | 16 | 299 | 1.14e-50 | 170 |
| MS.gene59376.t1 | AT5G21950 | 35.484 | 248 | 155 | 4 | 18 | 262 | 22 | 267 | 2.21e-47 | 160 |
| MS.gene59376.t1 | AT4G33180 | 31.399 | 293 | 180 | 8 | 16 | 296 | 21 | 304 | 2.52e-46 | 159 |
| MS.gene59376.t1 | AT5G09430 | 30.612 | 294 | 182 | 7 | 15 | 296 | 24 | 307 | 3.79e-43 | 150 |
| MS.gene59376.t1 | AT1G17430 | 31.250 | 288 | 172 | 9 | 25 | 298 | 56 | 331 | 3.21e-38 | 138 |
| MS.gene59376.t1 | AT1G72620 | 29.682 | 283 | 183 | 7 | 25 | 299 | 60 | 334 | 3.35e-38 | 138 |
| MS.gene59376.t1 | AT5G21950 | 34.694 | 196 | 125 | 2 | 18 | 212 | 22 | 215 | 4.93e-35 | 126 |
| MS.gene59376.t1 | AT5G21950 | 34.694 | 196 | 125 | 2 | 18 | 212 | 22 | 215 | 4.93e-35 | 126 |
| MS.gene59376.t1 | AT5G21950 | 34.694 | 196 | 125 | 2 | 18 | 212 | 74 | 267 | 2.13e-34 | 126 |
| MS.gene59376.t1 | AT5G21950 | 34.694 | 196 | 125 | 2 | 18 | 212 | 74 | 267 | 2.13e-34 | 126 |
| MS.gene59376.t1 | AT4G33180 | 31.553 | 206 | 122 | 6 | 16 | 211 | 21 | 217 | 3.96e-29 | 111 |
Find 74 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTACCTGTGAAAATTT+TGG | 0.092151 | 5.4:-12390714 | None:intergenic |
| GGCTGGTCATTTGGCTCATC+TGG | 0.296159 | 5.4:+12391126 | MS.gene59376:CDS |
| AAGGTACACGTATGAGATTC+TGG | 0.334714 | 5.4:+12389257 | MS.gene59376:CDS |
| AAAATCATTGAGCAGGCAAT+TGG | 0.336654 | 5.4:-12389767 | None:intergenic |
| TGGCTTGATGGACTTGGACT+TGG | 0.338171 | 5.4:-12389305 | None:intergenic |
| GTGAACATAATTTGGTCATT+TGG | 0.340509 | 5.4:+12389181 | MS.gene59376:CDS |
| AATAAAGAAGGCTGGTCATT+TGG | 0.368845 | 5.4:+12391117 | MS.gene59376:CDS |
| GGCTTGATGGACTTGGACTT+GGG | 0.373325 | 5.4:-12389304 | None:intergenic |
| TGCTGGATTCTCTTCTTGTT+CGG | 0.380760 | 5.4:+12389669 | MS.gene59376:CDS |
| TACAAGAGTCTTTGATTAGT+AGG | 0.383277 | 5.4:+12389635 | MS.gene59376:CDS |
| TGGGGTGGAGAAATGTGTTT+TGG | 0.383408 | 5.4:+12389516 | MS.gene59376:CDS |
| AGTTGTAACTGGCTCCGTTT+TGG | 0.386196 | 5.4:+12389609 | MS.gene59376:CDS |
| GAGAACCACCACTGGCTTGA+TGG | 0.386783 | 5.4:-12389317 | None:intergenic |
| CTCCACGGCTTCTGCGGTGA+TGG | 0.387211 | 5.4:+12389340 | MS.gene59376:CDS |
| CACCACTGGCTTGATGGACT+TGG | 0.394304 | 5.4:-12389311 | None:intergenic |
| GTTCAAGCTGTAGTTGTAAC+TGG | 0.395281 | 5.4:+12389598 | MS.gene59376:CDS |
| TAATTTGGTCATTTGGTAGT+TGG | 0.398888 | 5.4:+12389188 | MS.gene59376:CDS |
| TGGAATGGTGGCGTTTAAAA+TGG | 0.401285 | 5.4:+12389555 | MS.gene59376:CDS |
| TGAACATGGTGAACATAATT+TGG | 0.408308 | 5.4:+12389173 | MS.gene59376:CDS |
| TGGAGCCGCCGAAGAAAATT+AGG | 0.408458 | 5.4:-12389426 | None:intergenic |
| GGCTGAGCTTTATAGTGATC+TGG | 0.412917 | 5.4:+12389576 | MS.gene59376:CDS |
| GTTATTGCCATCTTCTATTG+AGG | 0.428516 | 5.4:+12389696 | MS.gene59376:CDS |
| ATCTTCTATTGAGGGATTGA+AGG | 0.442559 | 5.4:+12389705 | MS.gene59376:CDS |
| TTTATGTTCTGCGCAACCTC+TGG | 0.449101 | 5.4:-12390949 | None:intergenic |
| CGGAAGAAAGAAACTTCTTC+AGG | 0.453523 | 5.4:-12391174 | None:intergenic |
| TTATTGCCATCTTCTATTGA+GGG | 0.454208 | 5.4:+12389697 | MS.gene59376:CDS |
| GTCTTTGATTAGTAGGGCAG+TGG | 0.457317 | 5.4:+12389642 | MS.gene59376:CDS |
| GCAGAGGGGTTAAAGAAACT+TGG | 0.468717 | 5.4:+12389496 | MS.gene59376:CDS |
| TGCAGGTGACGTTCTCGAAT+AGG | 0.472485 | 5.4:+12390634 | MS.gene59376:intron |
| AACGACCATGTATTTACAAT+AGG | 0.473541 | 5.4:+12391149 | MS.gene59376:CDS |
| GGAGCGAAGTGAGCTATTAG+AGG | 0.475327 | 5.4:+12390659 | MS.gene59376:CDS |
| TGGATTCAGTTATGGTGGAA+TGG | 0.487428 | 5.4:+12389540 | MS.gene59376:CDS |
| TTTGTGTATTCAGAAACATT+TGG | 0.487702 | 5.4:+12389740 | MS.gene59376:CDS |
| AAATCATTGAGCAGGCAATT+GGG | 0.488795 | 5.4:-12389766 | None:intergenic |
| ACAAGAGTCTTTGATTAGTA+GGG | 0.490764 | 5.4:+12389636 | MS.gene59376:CDS |
| CAAGCAGAGTGTTTGGCAGA+GGG | 0.503609 | 5.4:+12389481 | MS.gene59376:CDS |
| AAACACTCTGCTTGAAAAGC+CGG | 0.504345 | 5.4:-12389472 | None:intergenic |
| AACATTTGAAGTAATAAAGA+AGG | 0.507370 | 5.4:+12391105 | MS.gene59376:CDS |
| TTGAAAAGCCGGTGATCGGT+CGG | 0.507567 | 5.4:-12389461 | None:intergenic |
| TGAAAAGCCGGTGATCGGTC+GGG | 0.508873 | 5.4:-12389460 | None:intergenic |
| CAGAGGGGTTAAAGAAACTT+GGG | 0.513583 | 5.4:+12389497 | MS.gene59376:CDS |
| CCTTTAGAAAATCATTGAGC+AGG | 0.514969 | 5.4:-12389774 | None:intergenic |
| GTCCATCACCGCAGAAGCCG+TGG | 0.517790 | 5.4:-12389342 | None:intergenic |
| TCAAGCAGAGTGTTTGGCAG+AGG | 0.521718 | 5.4:+12389480 | MS.gene59376:CDS |
| TTGGTTGGATTCAGTTATGG+TGG | 0.526865 | 5.4:+12389535 | MS.gene59376:CDS |
| AGACTCTTGTATAGCCAAAA+CGG | 0.529566 | 5.4:-12389623 | None:intergenic |
| AGGTACACGTATGAGATTCT+GGG | 0.532553 | 5.4:+12389258 | MS.gene59376:CDS |
| CTGCTTGAAAAGCCGGTGAT+CGG | 0.535364 | 5.4:-12389465 | None:intergenic |
| CGGTGATGGACTTGCAACAT+GGG | 0.541625 | 5.4:+12389354 | MS.gene59376:CDS |
| TTCAATCCCTCAATAGAAGA+TGG | 0.543411 | 5.4:-12389703 | None:intergenic |
| GCGGTGATGGACTTGCAACA+TGG | 0.546302 | 5.4:+12389353 | MS.gene59376:CDS |
| TCGGTCGGGCTTATCAGTTA+TGG | 0.551880 | 5.4:-12389446 | None:intergenic |
| CCGCCGAAGAAAATTAGGTC+AGG | 0.554011 | 5.4:-12389421 | None:intergenic |
| GTTCTCCTCCACGGCTTCTG+CGG | 0.555958 | 5.4:+12389334 | MS.gene59376:CDS |
| GATGCATATATCAGGACGCT+AGG | 0.560135 | 5.4:+12391073 | MS.gene59376:intron |
| TTTGAAGTAATAAAGAAGGC+TGG | 0.561474 | 5.4:+12391109 | MS.gene59376:CDS |
| AGTAGGGCAGTGGAAGATGC+TGG | 0.564974 | 5.4:+12389652 | MS.gene59376:CDS |
| TTAATTAAACATGGTGAACA+TGG | 0.570656 | 5.4:+12389159 | None:intergenic |
| TGATAAGCCCGACCGATCAC+CGG | 0.571968 | 5.4:+12389453 | MS.gene59376:CDS |
| AGGCACCTATTGTAAATACA+TGG | 0.591373 | 5.4:-12391154 | None:intergenic |
| CCGTGGAGGAGAACCACCAC+TGG | 0.606123 | 5.4:-12389325 | None:intergenic |
| TGTACCTTGCTCTATCTCCA+CGG | 0.623766 | 5.4:-12389242 | None:intergenic |
| CCAGTGGTGGTTCTCCTCCA+CGG | 0.625931 | 5.4:+12389325 | MS.gene59376:CDS |
| CAAGTCCATCAAGCCAGTGG+TGG | 0.639034 | 5.4:+12389312 | MS.gene59376:CDS |
| AAGCAGAGTGTTTGGCAGAG+GGG | 0.643656 | 5.4:+12389482 | MS.gene59376:CDS |
| AGTTGGACGATGAAGAATGT+AGG | 0.646491 | 5.4:+12389205 | MS.gene59376:CDS |
| CATCACCGCAGAAGCCGTGG+AGG | 0.648231 | 5.4:-12389339 | None:intergenic |
| GTCCAAGTCCATCAAGCCAG+TGG | 0.652930 | 5.4:+12389309 | MS.gene59376:CDS |
| GGTGACGTTCTCGAATAGGA+AGG | 0.655091 | 5.4:+12390638 | MS.gene59376:intron |
| ATTCAGTTATGGTGGAATGG+TGG | 0.669440 | 5.4:+12389543 | MS.gene59376:CDS |
| TACACCGTGGAGATAGAGCA+AGG | 0.676163 | 5.4:+12389238 | MS.gene59376:CDS |
| GGGGTTAAAGAAACTTGGGG+TGG | 0.683398 | 5.4:+12389501 | MS.gene59376:CDS |
| AGAGGGGTTAAAGAAACTTG+GGG | 0.711749 | 5.4:+12389498 | MS.gene59376:CDS |
| AGGTGTGAAGCTTTACACCG+TGG | 0.765486 | 5.4:+12389225 | MS.gene59376:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTCAAATCATTATTA+TGG | + | chr5.4:12391002-12391021 | MS.gene59376:intron | 10.0% |
| !!! | AAAAATTGATTGATAATTAA+AGG | - | chr5.4:12390028-12390047 | None:intergenic | 10.0% |
| !!! | ATTAACTTATCATTTTTTTT+AGG | - | chr5.4:12390230-12390249 | None:intergenic | 10.0% |
| !!! | TTAACTTATCATTTTTTTTA+GGG | - | chr5.4:12390229-12390248 | None:intergenic | 10.0% |
| !!! | TTCTTTTAAAAAAATGTTAT+TGG | + | chr5.4:12390163-12390182 | MS.gene59376:intron | 10.0% |
| !!! | GATAATAAAAACTTAAGTTT+TGG | - | chr5.4:12390852-12390871 | None:intergenic | 15.0% |
| !!! | TAACTTATCATTTTTTTTAG+GGG | - | chr5.4:12390228-12390247 | None:intergenic | 15.0% |
| !! | AAAGATAATTAAAGGGTTAT+TGG | + | chr5.4:12390059-12390078 | MS.gene59376:intron | 20.0% |
| !! | AACATTATATCATTAATTGC+AGG | + | chr5.4:12390617-12390636 | MS.gene59376:intron | 20.0% |
| !! | AATTGCAGAAAGATAATTAA+AGG | + | chr5.4:12390051-12390070 | MS.gene59376:intron | 20.0% |
| !! | ATTGCAGAAAGATAATTAAA+GGG | + | chr5.4:12390052-12390071 | MS.gene59376:intron | 20.0% |
| !! | GACAAAAAAAAATAAGATTG+TGG | - | chr5.4:12389859-12389878 | None:intergenic | 20.0% |
| !! | TTGAAATAATTATAACTACG+TGG | - | chr5.4:12390992-12391011 | None:intergenic | 20.0% |
| !!! | AAATTACCTGTGAAAATTTT+GGG | - | chr5.4:12390716-12390735 | None:intergenic | 20.0% |
| !!! | AACATTTGAAGTAATAAAGA+AGG | + | chr5.4:12391105-12391124 | MS.gene59376:CDS | 20.0% |
| !!! | TAAATTACCTGTGAAAATTT+TGG | - | chr5.4:12390717-12390736 | None:intergenic | 20.0% |
| ! | AAAAAATGATGTGTACATGT+AGG | + | chr5.4:12390290-12390309 | MS.gene59376:intron | 25.0% |
| ! | GTGATCAAGATAAACTTTAA+AGG | - | chr5.4:12391038-12391057 | None:intergenic | 25.0% |
| ! | TAATTGTTGATGCATATATC+AGG | + | chr5.4:12391065-12391084 | MS.gene59376:intron | 25.0% |
| ! | TTGTTAAACAAATGTATGCA+AGG | + | chr5.4:12389999-12390018 | MS.gene59376:intron | 25.0% |
| ! | TTTGATGAGACAACAAAATA+TGG | + | chr5.4:12390193-12390212 | MS.gene59376:intron | 25.0% |
| ! | TTTGTGTATTCAGAAACATT+TGG | + | chr5.4:12389740-12389759 | MS.gene59376:CDS | 25.0% |
| !! | AGATAAAATTTTCAAACCAG+AGG | + | chr5.4:12390933-12390952 | MS.gene59376:CDS | 25.0% |
| !! | TTTTCTTTCATCAAGCATAA+CGG | - | chr5.4:12391197-12391216 | None:intergenic | 25.0% |
| !!! | AAACTTAAGTTTTGGAAGAA+TGG | - | chr5.4:12390844-12390863 | None:intergenic | 25.0% |
| !!! | AACTTAAGTTTTGGAAGAAT+GGG | - | chr5.4:12390843-12390862 | None:intergenic | 25.0% |
| AACGACCATGTATTTACAAT+AGG | + | chr5.4:12391149-12391168 | MS.gene59376:CDS | 30.0% | |
| ACAAGAGTCTTTGATTAGTA+GGG | + | chr5.4:12389636-12389655 | MS.gene59376:CDS | 30.0% | |
| CCATAAATACCTATAGAGAT+GGG | - | chr5.4:12390458-12390477 | None:intergenic | 30.0% | |
| GTGAACATAATTTGGTCATT+TGG | + | chr5.4:12389181-12389200 | MS.gene59376:CDS | 30.0% | |
| TACAAGAGTCTTTGATTAGT+AGG | + | chr5.4:12389635-12389654 | MS.gene59376:CDS | 30.0% | |
| TGAACATGGTGAACATAATT+TGG | + | chr5.4:12389173-12389192 | MS.gene59376:CDS | 30.0% | |
| TTATTGCCATCTTCTATTGA+GGG | + | chr5.4:12389697-12389716 | MS.gene59376:CDS | 30.0% | |
| ! | GTTTAAGACCTCAAAATTGA+GGG | + | chr5.4:12390317-12390336 | MS.gene59376:intron | 30.0% |
| ! | TAATTTGGTCATTTGGTAGT+TGG | + | chr5.4:12389188-12389207 | MS.gene59376:CDS | 30.0% |
| ! | TTTGAAGTAATAAAGAAGGC+TGG | + | chr5.4:12391109-12391128 | MS.gene59376:CDS | 30.0% |
| !! | TGTTTTTACAATCATGGCTA+AGG | - | chr5.4:12390435-12390454 | None:intergenic | 30.0% |
| !!! | CTCTAACACTCTTTGTTTTA+CGG | + | chr5.4:12390752-12390771 | MS.gene59376:intron | 30.0% |
| !!! | GGCTTTGAAATAGTTTTAGA+TGG | - | chr5.4:12389286-12389305 | None:intergenic | 30.0% |
| !!! | TCAATTTTGAGGTCTTAAAC+CGG | - | chr5.4:12390317-12390336 | None:intergenic | 30.0% |
| !!! | TCTAACACTCTTTGTTTTAC+GGG | + | chr5.4:12390753-12390772 | MS.gene59376:intron | 30.0% |
| AAAATCATTGAGCAGGCAAT+TGG | - | chr5.4:12389770-12389789 | None:intergenic | 35.0% | |
| AAATCATTGAGCAGGCAATT+GGG | - | chr5.4:12389769-12389788 | None:intergenic | 35.0% | |
| AGACTCTTGTATAGCCAAAA+CGG | - | chr5.4:12389626-12389645 | None:intergenic | 35.0% | |
| AGGCACCTATTGTAAATACA+TGG | - | chr5.4:12391157-12391176 | None:intergenic | 35.0% | |
| ATAGGTATTTATGGCCACAA+TGG | + | chr5.4:12390464-12390483 | MS.gene59376:intron | 35.0% | |
| ATCTTCTATTGAGGGATTGA+AGG | + | chr5.4:12389705-12389724 | MS.gene59376:CDS | 35.0% | |
| CCCATCTCTATAGGTATTTA+TGG | + | chr5.4:12390455-12390474 | MS.gene59376:intron | 35.0% | |
| CTAATAGGAAAGAGCAAACT+AGG | + | chr5.4:12390490-12390509 | MS.gene59376:intron | 35.0% | |
| GCCATAAATACCTATAGAGA+TGG | - | chr5.4:12390459-12390478 | None:intergenic | 35.0% | |
| GGAAAAAAAACTCTCCAAAG+CGG | + | chr5.4:12390361-12390380 | MS.gene59376:intron | 35.0% | |
| GTAAAAACACCCATCTCTAT+AGG | + | chr5.4:12390446-12390465 | MS.gene59376:intron | 35.0% | |
| GTTATTGCCATCTTCTATTG+AGG | + | chr5.4:12389696-12389715 | MS.gene59376:CDS | 35.0% | |
| TAGGTATTTATGGCCACAAT+GGG | + | chr5.4:12390465-12390484 | MS.gene59376:intron | 35.0% | |
| TCAAAATTGAGGGTCTGTAA+GGG | + | chr5.4:12390327-12390346 | MS.gene59376:intron | 35.0% | |
| TTCAATCCCTCAATAGAAGA+TGG | - | chr5.4:12389706-12389725 | None:intergenic | 35.0% | |
| TTTCCTATTAGAACCCATTG+TGG | - | chr5.4:12390481-12390500 | None:intergenic | 35.0% | |
| ! | AATAAAGAAGGCTGGTCATT+TGG | + | chr5.4:12391117-12391136 | MS.gene59376:CDS | 35.0% |
| ! | CAATGTCCCAAAATTTTCAC+AGG | + | chr5.4:12390707-12390726 | MS.gene59376:CDS | 35.0% |
| ! | CAGCGAATACATCTTTTATG+GGG | + | chr5.4:12390904-12390923 | MS.gene59376:intron | 35.0% |
| ! | CCTGCTCAATGATTTTCTAA+AGG | + | chr5.4:12389774-12389793 | MS.gene59376:CDS | 35.0% |
| ! | CCTTTAGAAAATCATTGAGC+AGG | - | chr5.4:12389777-12389796 | None:intergenic | 35.0% |
| ! | GCAGCGAATACATCTTTTAT+GGG | + | chr5.4:12390903-12390922 | MS.gene59376:intron | 35.0% |
| ! | GGTTTAAGACCTCAAAATTG+AGG | + | chr5.4:12390316-12390335 | MS.gene59376:intron | 35.0% |
| ! | GTACCTGACCTAATTTTCTT+CGG | + | chr5.4:12389418-12389437 | MS.gene59376:CDS | 35.0% |
| ! | TGCAGCGAATACATCTTTTA+TGG | + | chr5.4:12390902-12390921 | MS.gene59376:intron | 35.0% |
| !! | AGCATTTTAGGTGGTGAAAA+AGG | + | chr5.4:12390398-12390417 | MS.gene59376:intron | 35.0% |
| !! | CATTTTAGGTGGTGAAAAAG+GGG | + | chr5.4:12390400-12390419 | MS.gene59376:intron | 35.0% |
| !! | GATGGGTGTTTTTACAATCA+TGG | - | chr5.4:12390441-12390460 | None:intergenic | 35.0% |
| !! | GCATTTTAGGTGGTGAAAAA+GGG | + | chr5.4:12390399-12390418 | MS.gene59376:intron | 35.0% |
| !!! | GTTTTGGTTGGATTCAGTTA+TGG | + | chr5.4:12389532-12389551 | MS.gene59376:CDS | 35.0% |
| AAACACTCTGCTTGAAAAGC+CGG | - | chr5.4:12389475-12389494 | None:intergenic | 40.0% | |
| AAGGTACACGTATGAGATTC+TGG | + | chr5.4:12389257-12389276 | MS.gene59376:CDS | 40.0% | |
| AGAGGGGTTAAAGAAACTTG+GGG | + | chr5.4:12389498-12389517 | MS.gene59376:CDS | 40.0% | |
| AGGTACACGTATGAGATTCT+GGG | + | chr5.4:12389258-12389277 | MS.gene59376:CDS | 40.0% | |
| AGTTGGACGATGAAGAATGT+AGG | + | chr5.4:12389205-12389224 | MS.gene59376:CDS | 40.0% | |
| ATGATGTGTACATGTAGGAC+CGG | + | chr5.4:12390295-12390314 | MS.gene59376:intron | 40.0% | |
| CAGAGGGGTTAAAGAAACTT+GGG | + | chr5.4:12389497-12389516 | MS.gene59376:CDS | 40.0% | |
| CGGAAGAAAGAAACTTCTTC+AGG | - | chr5.4:12391177-12391196 | None:intergenic | 40.0% | |
| CTCAAAATTGAGGGTCTGTA+AGG | + | chr5.4:12390326-12390345 | MS.gene59376:intron | 40.0% | |
| GTTCAAGCTGTAGTTGTAAC+TGG | + | chr5.4:12389598-12389617 | MS.gene59376:CDS | 40.0% | |
| TGCGCAGAACATAAAAGAGT+AGG | + | chr5.4:12390957-12390976 | MS.gene59376:intron | 40.0% | |
| TGCTGGATTCTCTTCTTGTT+CGG | + | chr5.4:12389669-12389688 | MS.gene59376:CDS | 40.0% | |
| TTGGTTGGATTCAGTTATGG+TGG | + | chr5.4:12389535-12389554 | MS.gene59376:CDS | 40.0% | |
| ! | ATTCAGTTATGGTGGAATGG+TGG | + | chr5.4:12389543-12389562 | MS.gene59376:CDS | 40.0% |
| ! | CTTACAGACCCTCAATTTTG+AGG | - | chr5.4:12390328-12390347 | None:intergenic | 40.0% |
| ! | TGGAATGGTGGCGTTTAAAA+TGG | + | chr5.4:12389555-12389574 | MS.gene59376:CDS | 40.0% |
| ! | TGGATTCAGTTATGGTGGAA+TGG | + | chr5.4:12389540-12389559 | MS.gene59376:CDS | 40.0% |
| !!! | GATGAGATGGAGAGCATTTT+AGG | + | chr5.4:12390386-12390405 | MS.gene59376:intron | 40.0% |
| !!! | GTGGAGAAATGTGTTTTGGT+TGG | + | chr5.4:12389520-12389539 | MS.gene59376:CDS | 40.0% |
| AATTGAGGGTCTGTAAGGGA+TGG | + | chr5.4:12390331-12390350 | MS.gene59376:intron | 45.0% | |
| ATTGAGGGTCTGTAAGGGAT+GGG | + | chr5.4:12390332-12390351 | MS.gene59376:intron | 45.0% | |
| GATGCATATATCAGGACGCT+AGG | + | chr5.4:12391073-12391092 | MS.gene59376:intron | 45.0% | |
| GCAGAGGGGTTAAAGAAACT+TGG | + | chr5.4:12389496-12389515 | MS.gene59376:CDS | 45.0% | |
| GTCTTTGATTAGTAGGGCAG+TGG | + | chr5.4:12389642-12389661 | MS.gene59376:CDS | 45.0% | |
| TCTGTAAGGGATGGGTACAT+TGG | + | chr5.4:12390340-12390359 | MS.gene59376:intron | 45.0% | |
| TGTACCTTGCTCTATCTCCA+CGG | - | chr5.4:12389245-12389264 | None:intergenic | 45.0% | |
| TTTATGTTCTGCGCAACCTC+TGG | - | chr5.4:12390952-12390971 | None:intergenic | 45.0% | |
| ! | CCTGACCTAATTTTCTTCGG+CGG | + | chr5.4:12389421-12389440 | MS.gene59376:CDS | 45.0% |
| ! | GGCTGAGCTTTATAGTGATC+TGG | + | chr5.4:12389576-12389595 | MS.gene59376:CDS | 45.0% |
| ! | TGGCCACAATGGGTTCTAAT+AGG | + | chr5.4:12390475-12390494 | MS.gene59376:intron | 45.0% |
| ! | TGGGGTGGAGAAATGTGTTT+TGG | + | chr5.4:12389516-12389535 | MS.gene59376:CDS | 45.0% |
| !! | AGTTGTAACTGGCTCCGTTT+TGG | + | chr5.4:12389609-12389628 | MS.gene59376:CDS | 45.0% |
| !! | GGCTTTTCAAGCAGAGTGTT+TGG | + | chr5.4:12389474-12389493 | MS.gene59376:CDS | 45.0% |
| !!! | GAGATGGAGAGCATTTTAGG+TGG | + | chr5.4:12390389-12390408 | MS.gene59376:intron | 45.0% |
| AGGTGTGAAGCTTTACACCG+TGG | + | chr5.4:12389225-12389244 | MS.gene59376:CDS | 50.0% | |
| CCGCCGAAGAAAATTAGGTC+AGG | - | chr5.4:12389424-12389443 | None:intergenic | 50.0% | |
| CTCCAAAGCGGATGATGAGA+TGG | + | chr5.4:12390373-12390392 | MS.gene59376:intron | 50.0% | |
| CTCCATCTCATCATCCGCTT+TGG | - | chr5.4:12390378-12390397 | None:intergenic | 50.0% | |
| CTGCTTGAAAAGCCGGTGAT+CGG | - | chr5.4:12389468-12389487 | None:intergenic | 50.0% | |
| GGAGCGAAGTGAGCTATTAG+AGG | + | chr5.4:12390659-12390678 | MS.gene59376:CDS | 50.0% | |
| GGGGTTAAAGAAACTTGGGG+TGG | + | chr5.4:12389501-12389520 | MS.gene59376:CDS | 50.0% | |
| GGTGACGTTCTCGAATAGGA+AGG | + | chr5.4:12390638-12390657 | MS.gene59376:intron | 50.0% | |
| TACACCGTGGAGATAGAGCA+AGG | + | chr5.4:12389238-12389257 | MS.gene59376:CDS | 50.0% | |
| TAGGTGGTGAAAAAGGGGAG+TGG | + | chr5.4:12390405-12390424 | MS.gene59376:intron | 50.0% | |
| TCGGTCGGGCTTATCAGTTA+TGG | - | chr5.4:12389449-12389468 | None:intergenic | 50.0% | |
| TGCAGGTGACGTTCTCGAAT+AGG | + | chr5.4:12390634-12390653 | MS.gene59376:intron | 50.0% | |
| TGGAGCCGCCGAAGAAAATT+AGG | - | chr5.4:12389429-12389448 | None:intergenic | 50.0% | |
| TTGAAAAGCCGGTGATCGGT+CGG | - | chr5.4:12389464-12389483 | None:intergenic | 50.0% | |
| ! | AAGCAGAGTGTTTGGCAGAG+GGG | + | chr5.4:12389482-12389501 | MS.gene59376:CDS | 50.0% |
| ! | CAAGCAGAGTGTTTGGCAGA+GGG | + | chr5.4:12389481-12389500 | MS.gene59376:CDS | 50.0% |
| ! | TCAAGCAGAGTGTTTGGCAG+AGG | + | chr5.4:12389480-12389499 | MS.gene59376:CDS | 50.0% |
| !! | CGGTGATGGACTTGCAACAT+GGG | + | chr5.4:12389354-12389373 | MS.gene59376:CDS | 50.0% |
| !! | GGCTTGATGGACTTGGACTT+GGG | - | chr5.4:12389307-12389326 | None:intergenic | 50.0% |
| !! | TGGCTTGATGGACTTGGACT+TGG | - | chr5.4:12389308-12389327 | None:intergenic | 50.0% |
| AGTAGGGCAGTGGAAGATGC+TGG | + | chr5.4:12389652-12389671 | MS.gene59376:CDS | 55.0% | |
| CAAGTCCATCAAGCCAGTGG+TGG | + | chr5.4:12389312-12389331 | MS.gene59376:CDS | 55.0% | |
| GTCCAAGTCCATCAAGCCAG+TGG | + | chr5.4:12389309-12389328 | MS.gene59376:CDS | 55.0% | |
| TGAAAAGCCGGTGATCGGTC+GGG | - | chr5.4:12389463-12389482 | None:intergenic | 55.0% | |
| TGATAAGCCCGACCGATCAC+CGG | + | chr5.4:12389453-12389472 | MS.gene59376:CDS | 55.0% | |
| ! | GGCTGGTCATTTGGCTCATC+TGG | + | chr5.4:12391126-12391145 | MS.gene59376:CDS | 55.0% |
| !! | CACCACTGGCTTGATGGACT+TGG | - | chr5.4:12389314-12389333 | None:intergenic | 55.0% |
| !! | GAGAACCACCACTGGCTTGA+TGG | - | chr5.4:12389320-12389339 | None:intergenic | 55.0% |
| !! | GCGGTGATGGACTTGCAACA+TGG | + | chr5.4:12389353-12389372 | MS.gene59376:CDS | 55.0% |
| CCAGTGGTGGTTCTCCTCCA+CGG | + | chr5.4:12389325-12389344 | MS.gene59376:CDS | 60.0% | |
| GTTCTCCTCCACGGCTTCTG+CGG | + | chr5.4:12389334-12389353 | MS.gene59376:CDS | 60.0% | |
| CATCACCGCAGAAGCCGTGG+AGG | - | chr5.4:12389342-12389361 | None:intergenic | 65.0% | |
| CCGTGGAGGAGAACCACCAC+TGG | - | chr5.4:12389328-12389347 | None:intergenic | 65.0% | |
| CTCCACGGCTTCTGCGGTGA+TGG | + | chr5.4:12389340-12389359 | MS.gene59376:CDS | 65.0% | |
| GTCCATCACCGCAGAAGCCG+TGG | - | chr5.4:12389345-12389364 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12389169 | 12391219 | 12389169 | ID=MS.gene59376 |
| chr5.4 | mRNA | 12389169 | 12391219 | 12389169 | ID=MS.gene59376.t1;Parent=MS.gene59376 |
| chr5.4 | exon | 12389169 | 12389795 | 12389169 | ID=MS.gene59376.t1.exon1;Parent=MS.gene59376.t1 |
| chr5.4 | CDS | 12389169 | 12389795 | 12389169 | ID=cds.MS.gene59376.t1;Parent=MS.gene59376.t1 |
| chr5.4 | exon | 12390639 | 12390728 | 12390639 | ID=MS.gene59376.t1.exon2;Parent=MS.gene59376.t1 |
| chr5.4 | CDS | 12390639 | 12390728 | 12390639 | ID=cds.MS.gene59376.t1;Parent=MS.gene59376.t1 |
| chr5.4 | exon | 12390907 | 12390974 | 12390907 | ID=MS.gene59376.t1.exon3;Parent=MS.gene59376.t1 |
| chr5.4 | CDS | 12390907 | 12390974 | 12390907 | ID=cds.MS.gene59376.t1;Parent=MS.gene59376.t1 |
| chr5.4 | exon | 12391087 | 12391219 | 12391087 | ID=MS.gene59376.t1.exon4;Parent=MS.gene59376.t1 |
| chr5.4 | CDS | 12391087 | 12391219 | 12391087 | ID=cds.MS.gene59376.t1;Parent=MS.gene59376.t1 |
| Gene Sequence |
| Protein sequence |
