AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057794


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057794.t1 MTR_4g072480 94.805 77 4 0 1 77 1 77 9.09e-50 154
MS.gene057794.t1 MTR_4g072680 96.053 76 3 0 1 76 1 76 1.36e-49 153
MS.gene057794.t1 MTR_4g072460 93.421 76 5 0 1 76 1 76 2.75e-48 150
MS.gene057794.t1 MTR_4g072620 89.610 77 8 0 1 77 1 77 1.01e-47 149
MS.gene057794.t1 MTR_4g072730 85.714 77 11 0 1 77 1 77 2.01e-45 143
MS.gene057794.t1 MTR_4g072570 80.263 76 15 0 1 76 1 76 6.78e-40 129
MS.gene057794.t1 MTR_4g072660 80.519 77 10 1 1 77 1 72 1.34e-39 128
MS.gene057794.t1 MTR_4g072530 77.922 77 17 0 1 77 1 77 2.73e-38 124
MS.gene057794.t1 MTR_4g072500 77.922 77 17 0 1 77 1 77 2.80e-38 125
MS.gene057794.t1 MTR_3g084150 73.684 76 20 0 1 76 1 76 7.89e-37 121
MS.gene057794.t1 MTR_4g072640 72.727 77 21 0 1 77 1 77 4.12e-36 119
MS.gene057794.t1 MTR_3g084180 72.368 76 21 0 1 76 1 76 4.69e-36 119
MS.gene057794.t1 MTR_8g461410 72.368 76 21 0 1 76 1 76 4.85e-36 119
MS.gene057794.t1 MTR_3g110042 73.684 76 20 0 1 76 1 76 1.90e-35 117
MS.gene057794.t1 MTR_4g072310 70.130 77 22 1 1 76 1 77 1.20e-34 115
MS.gene057794.t1 MTR_4g072240 68.831 77 23 1 1 76 1 77 1.53e-34 115
MS.gene057794.t1 MTR_4g072870 68.831 77 23 1 1 76 1 77 1.99e-34 115
MS.gene057794.t1 MTR_4g072230 71.429 77 19 2 1 76 1 75 2.53e-34 114
MS.gene057794.t1 MTR_3g084250 67.949 78 25 0 1 78 1 78 9.14e-34 113
MS.gene057794.t1 MTR_4g072880 70.130 77 22 1 1 76 1 77 1.12e-33 113
MS.gene057794.t1 MTR_4g072220 66.234 77 25 1 1 76 1 77 2.87e-33 112
MS.gene057794.t1 MTR_4g072300 66.234 77 25 1 1 76 1 77 2.89e-33 112
MS.gene057794.t1 MTR_3g117630 73.239 71 19 0 6 76 6 76 3.63e-33 112
MS.gene057794.t1 MTR_4g072370 65.385 78 25 1 1 78 1 76 3.74e-33 112
MS.gene057794.t1 MTR_3g084240 67.105 76 25 0 1 76 1 76 4.46e-33 111
MS.gene057794.t1 MTR_4g072270 68.831 77 23 1 1 76 1 77 6.17e-33 111
MS.gene057794.t1 MTR_4g072490 66.667 78 21 1 1 78 1 73 9.98e-33 110
MS.gene057794.t1 MTR_4g072630 66.667 78 22 1 1 78 1 74 1.17e-32 110
MS.gene057794.t1 MTR_4g072580 66.234 77 21 1 1 77 1 72 1.22e-32 110
MS.gene057794.t1 MTR_3g084170 67.105 76 25 0 1 76 1 76 1.83e-32 110
MS.gene057794.t1 MTR_4g072260 64.935 77 26 1 1 76 1 77 2.53e-32 109
MS.gene057794.t1 MTR_4g072890 64.935 77 26 1 1 76 1 77 2.87e-32 109
MS.gene057794.t1 MTR_4g072550 89.474 57 6 0 20 76 31 87 2.93e-32 110
MS.gene057794.t1 MTR_5g008360 80.952 63 12 0 13 75 4 66 3.43e-32 109
MS.gene057794.t1 MTR_4g072860 67.949 78 24 1 1 77 1 78 3.47e-32 109
MS.gene057794.t1 MTR_4g072250 71.429 77 20 2 1 76 1 76 6.15e-32 108
MS.gene057794.t1 MTR_3g084220 67.105 76 25 0 1 76 1 76 6.22e-32 108
MS.gene057794.t1 MTR_3g084210 66.250 80 27 0 1 80 1 80 8.82e-32 108
MS.gene057794.t1 MTR_4g072740 66.667 78 21 1 1 78 1 73 9.39e-32 108
MS.gene057794.t1 MTR_8g461420 67.500 80 26 0 1 80 1 80 1.01e-31 108
MS.gene057794.t1 MTR_3g110038 64.474 76 27 0 1 76 1 76 1.90e-31 107
MS.gene057794.t1 MTR_4g072330 61.538 78 28 1 1 78 1 76 2.16e-31 107
MS.gene057794.t1 MTR_3g084190 67.500 80 26 0 1 80 1 80 2.33e-31 107
MS.gene057794.t1 MTR_4g072600 65.385 78 22 1 1 78 1 73 2.49e-31 107
MS.gene057794.t1 MTR_3g084230 67.500 80 26 0 1 80 1 80 2.52e-31 107
MS.gene057794.t1 MTR_4g072830 62.500 80 28 1 1 80 1 78 2.93e-31 107
MS.gene057794.t1 MTR_3g110032 63.291 79 28 1 1 78 1 79 4.10e-31 107
MS.gene057794.t1 MTR_4g072610 62.963 81 24 1 1 81 1 75 4.13e-31 106
MS.gene057794.t1 MTR_3g084160 67.500 80 26 0 1 80 1 80 1.02e-30 105
MS.gene057794.t1 MTR_4g072465 62.821 78 25 1 1 78 1 74 1.55e-30 105
MS.gene057794.t1 MTR_4g072470 65.789 76 21 1 1 76 1 71 3.14e-30 104
MS.gene057794.t1 MTR_3g084260 64.935 77 26 1 1 76 1 77 3.65e-30 104
MS.gene057794.t1 MTR_4g072540 65.000 80 24 1 1 80 1 76 1.61e-29 102
MS.gene057794.t1 MTR_4g072750 63.415 82 28 1 1 80 1 82 2.32e-29 102
MS.gene057794.t1 MTR_4g050700 64.935 77 26 1 1 76 1 77 2.49e-29 102
MS.gene057794.t1 MTR_2g012410 64.935 77 26 1 1 76 1 77 2.49e-29 102
MS.gene057794.t1 MTR_4g072820 67.532 77 18 2 1 76 1 71 3.61e-29 101
MS.gene057794.t1 MTR_5g008350 57.317 82 30 1 1 82 1 77 4.02e-29 101
MS.gene057794.t1 MTR_4g072720 65.000 80 24 1 1 80 1 76 7.26e-29 100
MS.gene057794.t1 MTR_3g110045 66.667 78 26 0 3 80 62 139 9.07e-29 102
MS.gene057794.t1 MTR_4g072850 65.823 79 25 1 1 77 1 79 1.18e-28 100
MS.gene057794.t1 MTR_3g084200 61.111 72 28 0 1 72 1 72 4.10e-28 99.8
MS.gene057794.t1 MTR_4g072380 55.102 98 33 3 1 97 1 88 8.40e-28 98.2
MS.gene057794.t1 MTR_4g072650 61.538 78 24 1 1 78 1 72 8.94e-28 98.2
MS.gene057794.t1 MTR_4g072590 65.385 78 22 1 1 78 1 73 1.36e-27 97.8
MS.gene057794.t1 MTR_4g072670 61.250 80 27 1 1 80 1 76 1.92e-27 97.4
MS.gene057794.t1 MTR_4g072510 62.500 80 26 1 1 80 1 76 4.45e-27 96.3
MS.gene057794.t1 MTR_5g008370 75.000 60 15 0 18 77 18 77 6.73e-27 97.4
MS.gene057794.t1 MTR_4g072940 77.193 57 13 0 21 77 53 109 8.43e-27 97.1
MS.gene057794.t1 MTR_4g072770 59.740 77 21 1 1 77 1 67 4.32e-25 91.3
MS.gene057794.t1 MTR_4g072980 55.696 79 29 2 1 78 8 81 3.84e-24 89.4
MS.gene057794.t1 MTR_4g072690 61.250 80 26 1 1 80 1 75 4.36e-24 89.0
MS.gene057794.t1 MTR_4g072280 54.667 75 33 1 1 74 1 75 7.32e-24 88.2
MS.gene057794.t1 MTR_3g117640 74.545 55 13 1 25 78 34 88 2.87e-23 87.4
MS.gene057794.t1 MTR_4g072560 54.054 74 33 1 8 80 15 88 6.51e-23 86.3
MS.gene057794.t1 MTR_4g072450 60.256 78 26 1 1 78 1 73 7.75e-23 85.5
MS.gene057794.t1 MTR_4g072910 54.054 74 33 1 9 81 18 91 1.19e-22 85.5
MS.gene057794.t1 MTR_4g072290 51.948 77 22 2 1 76 1 63 6.21e-20 78.2
MS.gene057794.t1 MTR_3g117610 60.714 56 21 1 23 78 43 97 6.05e-19 76.6
MS.gene057794.t1 MTR_6g077850 50.877 57 28 0 24 80 33 89 6.42e-19 76.3
MS.gene057794.t1 MTR_3g110035 60.000 55 22 0 26 80 72 126 1.32e-18 76.3
MS.gene057794.t1 MTR_3g113310 58.182 55 22 1 23 77 40 93 1.93e-18 75.1
MS.gene057794.t1 MTR_4g072190 55.000 60 26 1 19 78 30 88 5.68e-18 73.6
MS.gene057794.t1 MTR_4g072930 54.237 59 23 1 27 81 43 101 9.07e-17 70.9
MS.gene057794.t1 MTR_8g076040 57.407 54 22 1 24 77 40 92 1.11e-15 67.8
MS.gene057794.t1 MTR_5g021820 50.000 58 28 1 24 81 39 95 1.39e-15 67.8
MS.gene057794.t1 MTR_1g024085 38.318 107 58 3 24 129 36 135 6.00e-14 64.3
MS.gene057794.t1 MTR_4g124750 44.156 77 40 2 4 78 46 121 2.15e-13 63.2
MS.gene057794.t1 MTR_2g043960 54.545 55 24 1 24 78 75 128 2.67e-13 63.2
MS.gene057794.t1 MTR_1g009150 53.571 56 25 1 25 80 71 125 2.01e-12 61.2
MS.gene057794.t1 MTR_8g461210 40.260 77 45 1 4 80 14 89 5.13e-12 58.9
MS.gene057794.t1 MTR_0388s0020 44.776 67 33 2 15 78 65 130 1.73e-11 58.2
MS.gene057794.t1 MTR_7g118010 53.571 56 23 2 25 78 23 77 1.93e-11 57.0
MS.gene057794.t1 MTR_4g025830 50.877 57 24 2 25 78 79 134 2.16e-11 58.2
MS.gene057794.t1 MTR_3g092220 43.077 65 34 2 16 78 24 87 2.38e-11 57.0
MS.gene057794.t1 MTR_4g005310 41.026 78 41 3 21 97 58 131 2.78e-11 57.8
MS.gene057794.t1 MTR_4g005320 46.667 60 31 1 25 84 70 128 3.58e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057794.t1 AT2G21200 62.500 72 25 2 7 76 2 73 5.09e-26 94.0
MS.gene057794.t1 AT4G34800 50.505 99 40 3 1 96 1 93 7.82e-26 93.6
MS.gene057794.t1 AT4G38840 76.364 55 12 1 24 77 32 86 3.96e-25 92.0
MS.gene057794.t1 AT4G34770 56.098 82 34 1 4 83 14 95 7.75e-25 91.3
MS.gene057794.t1 AT4G38825 56.757 74 28 2 7 76 2 75 3.33e-24 89.4
MS.gene057794.t1 AT2G21210 53.086 81 33 2 1 76 1 81 4.32e-24 89.4
MS.gene057794.t1 AT2G21210 53.086 81 33 2 1 76 68 148 1.91e-23 89.7
MS.gene057794.t1 AT4G38850 57.692 78 29 2 7 80 2 79 2.01e-23 87.4
MS.gene057794.t1 AT5G18020 54.545 77 33 2 1 76 1 76 6.97e-23 85.9
MS.gene057794.t1 AT3G03840 59.211 76 26 2 3 76 8 80 1.13e-22 85.5
MS.gene057794.t1 AT5G18080 55.844 77 32 2 1 76 1 76 1.85e-22 84.7
MS.gene057794.t1 AT4G34810 64.407 59 17 1 24 78 47 105 1.88e-22 85.5
MS.gene057794.t1 AT3G03850 61.039 77 23 3 3 77 8 79 2.38e-22 84.7
MS.gene057794.t1 AT4G13790 48.193 83 41 1 1 81 1 83 2.40e-22 84.7
MS.gene057794.t1 AT5G18060 54.667 75 29 2 7 76 2 76 2.53e-22 84.3
MS.gene057794.t1 AT5G18050 53.333 75 30 2 7 76 2 76 1.20e-21 82.8
MS.gene057794.t1 AT5G18030 54.795 73 30 2 7 76 2 74 1.51e-21 82.4
MS.gene057794.t1 AT3G03820 61.111 72 22 2 8 76 13 81 1.77e-21 82.4
MS.gene057794.t1 AT3G03830 55.263 76 25 2 3 75 8 77 8.88e-21 80.5
MS.gene057794.t1 AT5G18010 51.948 77 35 2 1 76 1 76 2.75e-20 79.3
MS.gene057794.t1 AT4G34790 62.500 56 19 1 25 78 39 94 5.73e-19 76.6
MS.gene057794.t1 AT4G38860 58.929 56 23 0 23 78 38 93 1.57e-18 75.1
MS.gene057794.t1 AT1G75580 60.714 56 21 1 23 78 42 96 8.97e-18 73.6
MS.gene057794.t1 AT2G21220 58.929 56 22 1 23 78 38 92 9.02e-18 73.2
MS.gene057794.t1 AT4G34760 58.182 55 22 1 23 77 41 94 3.38e-17 72.0
MS.gene057794.t1 AT4G34780 60.345 58 20 1 23 77 26 83 3.56e-17 72.0
MS.gene057794.t1 AT1G19830 57.143 56 23 1 23 78 46 100 2.69e-16 69.7
MS.gene057794.t1 AT4G36110 55.556 54 23 1 24 77 39 91 1.14e-14 65.5
MS.gene057794.t1 AT2G16580 50.847 59 28 1 23 81 42 99 1.15e-14 65.5
MS.gene057794.t1 AT2G18010 51.724 58 27 1 24 81 47 103 2.13e-14 64.7
MS.gene057794.t1 AT3G43120 47.692 65 33 1 14 78 68 131 9.07e-14 64.3
MS.gene057794.t1 AT5G20810 54.545 55 24 1 24 78 78 131 1.71e-12 61.2
MS.gene057794.t1 AT5G20810 50.000 62 30 1 17 78 71 131 1.94e-12 61.6
MS.gene057794.t1 AT3G20220 45.070 71 33 3 11 80 37 102 2.01e-12 60.1
MS.gene057794.t1 AT1G75590 35.606 132 75 5 4 129 16 143 4.58e-12 59.7
MS.gene057794.t1 AT5G66260 49.123 57 28 1 25 81 34 89 1.04e-11 57.8
MS.gene057794.t1 AT3G51200 50.980 51 24 1 26 76 41 90 1.32e-11 57.4
MS.gene057794.t1 AT5G10990 37.037 108 55 4 24 129 40 136 2.60e-11 57.8
MS.gene057794.t1 AT3G09870 47.619 63 30 2 24 84 44 105 2.81e-11 57.0
MS.gene057794.t1 AT3G12830 43.836 73 39 2 4 76 30 100 5.57e-11 56.6

Find 27 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACAAGTCTTGAAATGA+AGG 0.342172 4.4:+36667201 None:intergenic
AGTCAAGCCGAGGAAGAGTT+TGG 0.367159 4.4:-36667180 MS.gene057794:CDS
TTACATGGAATTAGCAAAAC+AGG 0.383422 4.4:+36666698 None:intergenic
CTCTTAGAATAGAGTTTAAA+CGG 0.400936 4.4:+36667343 None:intergenic
GGTTTGTTCAAGTATGATAC+AGG 0.410295 4.4:+36667222 None:intergenic
CGTTTAAACTCTATTCTAAG+AGG 0.413979 4.4:-36667342 MS.gene057794:CDS
CGTGTATGTTGGAGAGAAAC+TGG 0.417120 4.4:-36667259 MS.gene057794:CDS
AAAATCAGTAGAAGTGAGAA+AGG 0.471464 4.4:-36667292 MS.gene057794:CDS
AAAATCTATGGGCGTTCCAA+AGG 0.472091 4.4:+36665571 None:intergenic
AAATCTATGGGCGTTCCAAA+GGG 0.529875 4.4:+36665572 None:intergenic
TACACAGCTAGATATCCCTT+TGG 0.531737 4.4:-36665587 MS.gene057794:CDS
ATCATATCCAAACTCTTCCT+CGG 0.532636 4.4:+36667173 None:intergenic
GGCTATGTTGCCGTGTATGT+TGG 0.537170 4.4:-36667270 MS.gene057794:CDS
GACATCTTCCGTACAAGGAA+TGG 0.540589 4.4:+36667131 None:intergenic
AAACTCTATTCTAAGAGGAT+CGG 0.556160 4.4:-36667337 MS.gene057794:CDS
GTTTGGATATGATCATCCCA+TGG 0.570301 4.4:-36667163 MS.gene057794:CDS
AAATCAGTAGAAGTGAGAAA+GGG 0.578349 4.4:-36667291 MS.gene057794:CDS
AGGAATGGTGAGGCCACCCA+TGG 0.587754 4.4:+36667146 None:intergenic
CAGTTTCTCTCCAACATACA+CGG 0.594831 4.4:+36667260 None:intergenic
GGATATGATCATCCCATGGG+TGG 0.600402 4.4:-36667159 MS.gene057794:CDS
AGACTTGTTGAGTCAAGCCG+AGG 0.633253 4.4:-36667190 MS.gene057794:CDS
TTTGGATATGATCATCCCAT+GGG 0.641263 4.4:-36667162 MS.gene057794:CDS
GGAATGGTGAGGCCACCCAT+GGG 0.648249 4.4:+36667147 None:intergenic
CTTCCGTACAAGGAATGGTG+AGG 0.686019 4.4:+36667136 None:intergenic
GTTTGTTCAAGTATGATACA+GGG 0.688837 4.4:+36667223 None:intergenic
GGATATCTAGCTGTGTACGT+AGG 0.696914 4.4:+36665593 None:intergenic
ATGTTGGAGAGAAACTGGCG+CGG 0.774668 4.4:-36667254 MS.gene057794:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATATTTATAAATAAG+GGG - chr4.4:36666970-36666989 MS.gene057794:intron 10.0%
!! ATAATTTAGCCAAATTAATT+AGG - chr4.4:36666288-36666307 MS.gene057794:intron 15.0%
!!! AAGAATTTTAATTACTTACA+TGG + chr4.4:36666247-36666266 None:intergenic 15.0%
!!! AGTTTTTCAAATTATTTTGA+AGG + chr4.4:36666542-36666561 None:intergenic 15.0%
!!! TTTGCTTTAAATATGATATA+GGG - chr4.4:36667287-36667306 MS.gene057794:CDS 15.0%
!!! TTTTGCTTTAAATATGATAT+AGG - chr4.4:36667286-36667305 MS.gene057794:CDS 15.0%
!! ATATTTCACATTTATTCAGA+AGG - chr4.4:36666364-36666383 MS.gene057794:intron 20.0%
!! TATCTCTAATACTAGATAAT+TGG - chr4.4:36666695-36666714 MS.gene057794:intron 20.0%
!! TATTTCACATTTATTCAGAA+GGG - chr4.4:36666365-36666384 MS.gene057794:intron 20.0%
!!! AACTAATTTGCTACAAAAAT+TGG - chr4.4:36667099-36667118 MS.gene057794:intron 20.0%
!!! GTTGTTTTGTAAAAAAACAA+TGG + chr4.4:36666762-36666781 None:intergenic 20.0%
!!! TTTCTATTTTTTTTGCAACA+GGG - chr4.4:36666868-36666887 MS.gene057794:intron 20.0%
!!! TTTGAGACAATTTTCATTAT+AGG - chr4.4:36665891-36665910 MS.gene057794:intron 20.0%
!!! TTTTTTTACAAAACAACAAC+AGG - chr4.4:36666765-36666784 MS.gene057794:intron 20.0%
! AAACTAGATGTTATGAAACA+TGG - chr4.4:36666557-36666576 MS.gene057794:intron 25.0%
! AAAGAACTAACTATTGTAGT+AGG + chr4.4:36666136-36666155 None:intergenic 25.0%
! AAGTAGTATTAGTACTATAG+TGG + chr4.4:36666663-36666682 None:intergenic 25.0%
! AATGGAGAAAATTTACTATC+TGG - chr4.4:36665952-36665971 MS.gene057794:intron 25.0%
! ACGAATTTACTTCTAATGTT+TGG - chr4.4:36666494-36666513 MS.gene057794:intron 25.0%
! CATATAATTTCTTCCTTGAA+TGG - chr4.4:36665825-36665844 MS.gene057794:intron 25.0%
! CATATTTATAAATAAGGGGA+AGG - chr4.4:36666974-36666993 MS.gene057794:intron 25.0%
! CTCTTAGAATAGAGTTTAAA+CGG + chr4.4:36665587-36665606 None:intergenic 25.0%
! GTCATTAAACAAGAAAAAAG+AGG + chr4.4:36666002-36666021 None:intergenic 25.0%
! GTTATTTATTCTTCATAAGC+AGG + chr4.4:36666091-36666110 None:intergenic 25.0%
! TATTTAACCAAACTAACCAA+TGG + chr4.4:36666347-36666366 None:intergenic 25.0%
! TCAAGGAAGAAATTATATGT+TGG + chr4.4:36665824-36665843 None:intergenic 25.0%
! TTAGCCAAATTAATTAGGTT+CGG - chr4.4:36666293-36666312 MS.gene057794:intron 25.0%
! TTGAATCAACTTCAAACTAT+AGG + chr4.4:36666402-36666421 None:intergenic 25.0%
!! CAAAAGAGAAAATCTTTTGA+AGG - chr4.4:36667071-36667090 MS.gene057794:intron 25.0%
!! GTAAATATTACCCTTTTCAT+GGG - chr4.4:36665928-36665947 MS.gene057794:intron 25.0%
!! TGTAAATATTACCCTTTTCA+TGG - chr4.4:36665927-36665946 MS.gene057794:intron 25.0%
!!! GTTTCTATTTTTTTTGCAAC+AGG - chr4.4:36666867-36666886 MS.gene057794:intron 25.0%
!!! TCTTTTGTTGTTATCATACT+TGG + chr4.4:36667058-36667077 None:intergenic 25.0%
!!! TTCTATTTTTTTTGCAACAG+GGG - chr4.4:36666869-36666888 MS.gene057794:intron 25.0%
AAAATCAGTAGAAGTGAGAA+AGG - chr4.4:36665635-36665654 MS.gene057794:intron 30.0%
AAATCAGTAGAAGTGAGAAA+GGG - chr4.4:36665636-36665655 MS.gene057794:intron 30.0%
AATTGTAGGTGACAAGTAAA+TGG - chr4.4:36666729-36666748 MS.gene057794:intron 30.0%
ATTTGAGTATGATCATCCAA+TGG + chr4.4:36667230-36667249 None:intergenic 30.0%
CAAATTTCACTAGCTATAGT+TGG - chr4.4:36666050-36666069 MS.gene057794:intron 30.0%
CGTTTAAACTCTATTCTAAG+AGG - chr4.4:36665585-36665604 MS.gene057794:CDS 30.0%
GTTTGTTCAAGTATGATACA+GGG + chr4.4:36665707-36665726 None:intergenic 30.0%
TAAGATTCATAGTCCATTCA+AGG + chr4.4:36665841-36665860 None:intergenic 30.0%
TTACATGGAATTAGCAAAAC+AGG + chr4.4:36666232-36666251 None:intergenic 30.0%
TTTACTTCTAATGTTTGGCA+TGG - chr4.4:36666499-36666518 MS.gene057794:intron 30.0%
TTTGAGTATGATCATCCAAT+GGG + chr4.4:36667229-36667248 None:intergenic 30.0%
! AAACTCTATTCTAAGAGGAT+CGG - chr4.4:36665590-36665609 MS.gene057794:CDS 30.0%
!!! TCTATTTTTTTTGCAACAGG+GGG - chr4.4:36666870-36666889 MS.gene057794:intron 30.0%
AAACTAACCAATGGAAGCAA+AGG + chr4.4:36666338-36666357 None:intergenic 35.0%
AAGAAAACTTCTTCTCTGCA+AGG - chr4.4:36667190-36667209 MS.gene057794:CDS 35.0%
ACTCAAATTGTTCCTCACTT+TGG - chr4.4:36667242-36667261 MS.gene057794:CDS 35.0%
ATCATATCCAAACTCTTCCT+CGG + chr4.4:36665757-36665776 None:intergenic 35.0%
CTCAACAAGTCTTGAAATGA+AGG + chr4.4:36665729-36665748 None:intergenic 35.0%
GACTATGAATCTTACACTGT+AGG - chr4.4:36665847-36665866 MS.gene057794:intron 35.0%
TAGGCCGAACCTAATTAATT+TGG + chr4.4:36666300-36666319 None:intergenic 35.0%
TTCTCCATTTCCCATGAAAA+GGG + chr4.4:36665941-36665960 None:intergenic 35.0%
TTTCTCCATTTCCCATGAAA+AGG + chr4.4:36665942-36665961 None:intergenic 35.0%
TTTGGATATGATCATCCCAT+GGG - chr4.4:36665765-36665784 MS.gene057794:intron 35.0%
! ATTACCCTTTTCATGGGAAA+TGG - chr4.4:36665934-36665953 MS.gene057794:intron 35.0%
! GGTTTGTTCAAGTATGATAC+AGG + chr4.4:36665708-36665727 None:intergenic 35.0%
! TTTGCTTCCATTGGTTAGTT+TGG - chr4.4:36666337-36666356 MS.gene057794:intron 35.0%
!!! CAAAACAGGTTTTGTTGCAT+AGG + chr4.4:36666218-36666237 None:intergenic 35.0%
!!! CTATTTTTTTTGCAACAGGG+GGG - chr4.4:36666871-36666890 MS.gene057794:intron 35.0%
!!! TATTTTTTTTGCAACAGGGG+GGG - chr4.4:36666872-36666891 MS.gene057794:intron 35.0%
AAAGAGCCATAAGATACAGC+AGG + chr4.4:36666437-36666456 None:intergenic 40.0%
AAGAGCCATAAGATACAGCA+GGG + chr4.4:36666436-36666455 None:intergenic 40.0%
CAGTTTCTCTCCAACATACA+CGG + chr4.4:36665670-36665689 None:intergenic 40.0%
GTTATGAAACATGGCATCCA+TGG - chr4.4:36666566-36666585 MS.gene057794:intron 40.0%
GTTGCATAGGAAGATTTAGC+TGG + chr4.4:36666205-36666224 None:intergenic 40.0%
GTTTGGATATGATCATCCCA+TGG - chr4.4:36665764-36665783 MS.gene057794:intron 40.0%
TAATGTTTGGCATGGAGTTC+TGG - chr4.4:36666507-36666526 MS.gene057794:intron 40.0%
TACACAGCTAGATATCCCTT+TGG - chr4.4:36667340-36667359 MS.gene057794:CDS 40.0%
! AAGGCAGTTTCTGAAGACAT+AGG + chr4.4:36666319-36666338 None:intergenic 40.0%
! TGGCAACTGTCTGAAATTGT+AGG - chr4.4:36666715-36666734 MS.gene057794:CDS 40.0%
AACTGCCCTGCTGTATCTTA+TGG - chr4.4:36666428-36666447 MS.gene057794:intron 45.0%
AGAATTGCTGAGCCAAAGTG+AGG + chr4.4:36667257-36667276 None:intergenic 45.0%
ATGGCATCCATGGAAGGAAT+GGG - chr4.4:36666576-36666595 MS.gene057794:intron 45.0%
CGTGTATGTTGGAGAGAAAC+TGG - chr4.4:36665668-36665687 MS.gene057794:intron 45.0%
GAAACTGCCTTTGCTTCCAT+TGG - chr4.4:36666328-36666347 MS.gene057794:intron 45.0%
GACATCTTCCGTACAAGGAA+TGG + chr4.4:36665799-36665818 None:intergenic 45.0%
GAGTATGATCATCCAATGGG+TGG + chr4.4:36667226-36667245 None:intergenic 45.0%
GGATATCTAGCTGTGTACGT+AGG + chr4.4:36667337-36667356 None:intergenic 45.0%
TGAAACATGGCATCCATGGA+AGG - chr4.4:36666570-36666589 MS.gene057794:intron 45.0%
TGGAAGACATCTTCCGTACA+AGG + chr4.4:36665804-36665823 None:intergenic 45.0%
! CACTTTGGCTCAGCAATTCT+TGG - chr4.4:36667257-36667276 MS.gene057794:CDS 45.0%
! GTTTTCTCCCATTCCTTCCA+TGG + chr4.4:36666586-36666605 None:intergenic 45.0%
!!! ATTTTCATATTTATAAATAA+GGG - chr4.4:36666969-36666988 MS.gene057794:intron 5.0%
!!! TATTTTCATATTTATAAATA+AGG - chr4.4:36666968-36666987 MS.gene057794:intron 5.0%
AGTCAAGCCGAGGAAGAGTT+TGG - chr4.4:36665747-36665766 MS.gene057794:intron 50.0%
ATGTTGGAGAGAAACTGGCG+CGG - chr4.4:36665673-36665692 MS.gene057794:intron 50.0%
CATGGCATCCATGGAAGGAA+TGG - chr4.4:36666575-36666594 MS.gene057794:intron 50.0%
CTTCCGTACAAGGAATGGTG+AGG + chr4.4:36665794-36665813 None:intergenic 50.0%
GGAATAGTGAGACCACCCAT+TGG - chr4.4:36667211-36667230 MS.gene057794:CDS 50.0%
GGATATGATCATCCCATGGG+TGG - chr4.4:36665768-36665787 MS.gene057794:intron 50.0%
GGCTATGTTGCCGTGTATGT+TGG - chr4.4:36665657-36665676 MS.gene057794:intron 50.0%
TGGCCTCACCATTCCTTGTA+CGG - chr4.4:36665788-36665807 MS.gene057794:intron 50.0%
!! AGACTTGTTGAGTCAAGCCG+AGG - chr4.4:36665737-36665756 MS.gene057794:intron 50.0%
AGGAATGGTGAGGCCACCCA+TGG + chr4.4:36665784-36665803 None:intergenic 60.0%
GGAATGGTGAGGCCACCCAT+GGG + chr4.4:36665783-36665802 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 36665576 36667373 36665576 ID=MS.gene057794
chr4.4 mRNA 36665576 36667373 36665576 ID=MS.gene057794.t1;Parent=MS.gene057794
chr4.4 exon 36667145 36667373 36667145 ID=MS.gene057794.t1.exon1;Parent=MS.gene057794.t1
chr4.4 CDS 36667145 36667373 36667145 ID=cds.MS.gene057794.t1;Parent=MS.gene057794.t1
chr4.4 exon 36666702 36666743 36666702 ID=MS.gene057794.t1.exon2;Parent=MS.gene057794.t1
chr4.4 CDS 36666702 36666743 36666702 ID=cds.MS.gene057794.t1;Parent=MS.gene057794.t1
chr4.4 exon 36665857 36665909 36665857 ID=MS.gene057794.t1.exon3;Parent=MS.gene057794.t1
chr4.4 CDS 36665857 36665909 36665857 ID=cds.MS.gene057794.t1;Parent=MS.gene057794.t1
chr4.4 exon 36665576 36665641 36665576 ID=MS.gene057794.t1.exon4;Parent=MS.gene057794.t1
chr4.4 CDS 36665576 36665641 36665576 ID=cds.MS.gene057794.t1;Parent=MS.gene057794.t1
Gene Sequence

>MS.gene057794

ATGGGTTTCCGTTTAAACTCTATTCTAAGAGGATCGGTAACAGCTAGACAAGCAACATCAAAATCAGTAGAAGTGAGAAAGGGCTATGTTGCCGTGTATGTTGGAGAGAAACTGGCGCGGTTTGTAGTCCCTGTATCATACTTGAACAAACCTTCATTTCAAGACTTGTTGAGTCAAGCCGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACCATTCCTTGTACGGAAGATGTCTTCCAACATATAATTTCTTCCTTGAATGGACTATGAATCTTACACTGTAGGATACTCACATAGACTAGATTATTTGAGACAATTTTCATTATAGGCATCTTTTTTAATTGTAAATATTACCCTTTTCATGGGAAATGGAGAAAATTTACTATCTGGATAACAAATTCAAAAATTTACTGTCCTCTTTTTTCTTGTTTAATGACACATTGAGCTCATTTACTTTTTCAGTTACAAATTTCACTAGCTATAGTTGGTTCTTTAAATTTAAGCCTGCTTATGAAGAATAAATAACTTTGCTGATTTAAAAGATAAAGCCTACTACAATAGTTAGTTCTTTAAGTCTGTTGAAATAAGATAATCTGTTTCTTTTACTTCTGTAAAATCCAGCTAAATCTTCCTATGCAACAAAACCTGTTTTGCTAATTCCATGTAAGTAATTAAAATTCTTAAACAAAATCAATAACTATTGATAATTTAGCCAAATTAATTAGGTTCGGCCTATGTCTTCAGAAACTGCCTTTGCTTCCATTGGTTAGTTTGGTTAAATATTTCACATTTATTCAGAAGGGCTCTTTCAACTCCTATAGTTTGAAGTTGATTCAAATTTCAAACTGCCCTGCTGTATCTTATGGCTCTTTAGTCTTTAACTATTTAATTTTCTCAAAACATAAAATCACGAATTTACTTCTAATGTTTGGCATGGAGTTCTGGTAATTTTCTCCTTCAAAATAATTTGAAAAACTAGATGTTATGAAACATGGCATCCATGGAAGGAATGGGAGAAAACTCAAATAATCTTTGTATTGATGATAAAATGAATATTACAAATGAGTGAATTATTCCACTATAGTACTAATACTACTTGTAACTAAACTATATCTCTAATACTAGATAATTGGCAACTGTCTGAAATTGTAGGTGACAAGTAAATGGAGATAAACCATTGTTTTTTTACAAAACAACAACAGGATCTATGACTAAAAACACAAAGAAAACTACAAATAAATCAATATAGTTAGATTCAGTGTTTTTCTTGAAGTTGTTTTAAGTTTCTATTTTTTTTGCAACAGGGGGGGATTCGATTTTATATTTGAAGTGAATGAATTTTTCATTTTATCAGAGAGATTATAAACTGAAAATTTAGCAATCTATTTTCATATTTATAAATAAGGGGAAGGAATAGAGAAATAATGTAACAGTGTTTAAAAATTTCTCATTCAGATGAATGTTTTACATCCAAGTATGATAACAACAAAAGAGAAAATCTTTTGAAGGTAAAAAACTAATTTGCTACAAAAATTGGTCAAATATCTATGTCAATCTTCTACTATCTTCAGAGAGCTACTTCAATTTAAGCTAGAAGTGATGTCTAAGAAAACTTCTTCTCTGCAAGGAATAGTGAGACCACCCATTGGATGATCATACTCAAATTGTTCCTCACTTTGGCTCAGCAATTCTTGGAATGATTTTTGCTTTAAATATGATATAGGGATCACAAATCTCTTCATTTTCTCTCCTACGTACACAGCTAGATATCCCTTTGGAACGCCCATAG

Protein sequence

>MS.gene057794.t1

MGFRLNSILRGSVTARQATSKSVEVRKGYVAVYVGEKLARFVVPVSYLNKPSFQDLLSQAEEEFGYDHPMGGLTIPSKSSYATKPVLLIPYECFTSKYDNNKRENLLKGSQISSFSLLRTQLDIPLERP