AlfalfaGEDB | MS.gene60578

M. sativa cultivar XinJiangDaYe / MS.gene60578

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030246
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60578.t1	XP_003599063.1	77.1	157	34	1	1	157	127	281	2.90E-59	238

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60578.t1	P16270	56.5	154	64	3	1	154	115	265	3.4e-40	166.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60578.t1	G7J1U2	77.1	157	34	1	1	157	127	281	2.1e-59	238.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene60578	0.84938	3.36E-60	-1.69E-46
MS.gene052011	MS.gene60578	0.804314	2.29E-49	-1.69E-46
MS.gene052223	MS.gene60578	0.806403	8.37E-50	-1.69E-46
MS.gene05240	MS.gene60578	0.812514	4.08E-51	-1.69E-46
MS.gene052702	MS.gene60578	0.824504	7.79E-54	-1.69E-46
MS.gene054277	MS.gene60578	0.808423	3.12E-50	-1.69E-46
MS.gene054742	MS.gene60578	0.803846	2.87E-49	-1.69E-46
MS.gene055601	MS.gene60578	0.819899	9.11E-53	-1.69E-46
MS.gene056330	MS.gene60578	0.818607	1.79E-52	-1.69E-46
MS.gene056688	MS.gene60578	0.808835	2.55E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60578.t1	MTR_3g027280	77.070	157	34	1	1	157	127	281	2.13e-81	241
MS.gene60578.t1	MTR_1g090957	77.070	157	34	1	1	157	115	269	2.21e-80	239
MS.gene60578.t1	MTR_1g090930	77.273	154	31	2	1	152	122	273	5.95e-77	231
MS.gene60578.t1	MTR_1g090937	72.549	153	40	2	1	153	120	270	3.18e-76	228
MS.gene60578.t1	MTR_3g054170	58.741	143	55	2	1	141	113	253	7.12e-50	160
MS.gene60578.t1	MTR_3g054180	57.241	145	56	3	1	141	117	259	3.30e-47	154
MS.gene60578.t1	MTR_1g090973	52.201	159	69	5	1	156	119	273	9.12e-46	150
MS.gene60578.t1	MTR_3g054200	55.556	144	58	3	1	141	113	253	2.57e-42	141
MS.gene60578.t1	MTR_0684s0020	52.288	153	68	3	1	151	118	267	5.54e-42	141
MS.gene60578.t1	MTR_0163s0020	52.288	153	68	3	1	151	119	268	5.56e-42	141

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60578.t1	AT5G10530	37.255	153	81	6	2	141	103	253	1.96e-16	75.9
MS.gene60578.t1	AT5G65600	34.043	141	81	4	1	129	119	259	3.07e-13	66.6

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Find 40 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGCACTTTCTGAGT+TGG	0.481047	1.2:+69154475	None:intergenic
AAACGTGCACTTTCTGAGTT+GGG	0.453097	1.2:+69154476	None:intergenic
AAATCTATGAGGTACCATAT+TGG	0.393883	1.2:-69154374	MS.gene60578:CDS
AACAACACTCAATGTGTTAG+AGG	0.369181	1.2:+69154259	None:intergenic
AACTCAGAAAGTGCACGTTT+TGG	0.408486	1.2:-69154473	MS.gene60578:CDS
AAGTGCTGAATGACCATGAA+TGG	0.510801	1.2:+69154114	None:intergenic
AATATGGTACCTCATAGATT+TGG	0.272536	1.2:+69154376	None:intergenic
AATGCTTACAATCAATTTGT+TGG	0.337940	1.2:-69154434	MS.gene60578:CDS
AATGGTAGAAAATTTGCCAT+TGG	0.495781	1.2:+69154226	None:intergenic
ACAACACTCAATGTGTTAGA+GGG	0.619552	1.2:+69154260	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGGTACCTCATAGATT+TGG	+	chr1.2:69154200-69154219	None:intergenic	30.0%
AATGGTAGAAAATTTGCCAT+TGG	+	chr1.2:69154350-69154369	None:intergenic	30.0%
AGAAATTAAAGAGTTGACGT+TGG	+	chr1.2:69154227-69154246	None:intergenic	30.0%
ATATGGTACCTCATAGATTT+GGG	+	chr1.2:69154199-69154218	None:intergenic	30.0%
ATGGTAGAAAATTTGCCATT+GGG	+	chr1.2:69154349-69154368	None:intergenic	30.0%
AACAACACTCAATGTGTTAG+AGG	+	chr1.2:69154317-69154336	None:intergenic	35.0%
ACAACACTCAATGTGTTAGA+GGG	+	chr1.2:69154316-69154335	None:intergenic	35.0%
CAAATCAACGATTTGAGCAA+TGG	+	chr1.2:69154368-69154387	None:intergenic	35.0%
CTTATGATCCCAAATCTATG+AGG	-	chr1.2:69154188-69154207	MS.gene60578:CDS	35.0%
TGGTAGAAAATTTGCCATTG+GGG	+	chr1.2:69154348-69154367	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	69154061	69154534	69154061	ID=MS.gene60578
chr1.2	mRNA	69154061	69154534	69154061	ID=MS.gene60578.t1;Parent=MS.gene60578
chr1.2	exon	69154061	69154534	69154061	ID=MS.gene60578.t1.exon1;Parent=MS.gene60578.t1
chr1.2	CDS	69154061	69154534	69154061	ID=cds.MS.gene60578.t1;Parent=MS.gene60578.t1

Gene Sequence

>MS.gene60578

ATGTTCTTTATTGCACCACAAGACACTGTGATTCCACCCAACTCAGAAAGTGCACGTTTTGGAGTAGTTGATTCAAAAAATGCTTACAATCAATTTGTTGGTGTAGAGTTTGACCTTTATACCAATCCTTATGATCCCAAATCTATGAGGTACCATATTGGAACCAACGTCAACTCTTTAATTTCTCTCAAGGTCATGAAATGGGAATGGGTGACTGGATCATTGAATGAAGTAAGTATAGCCTATGACTCTCCCTCTAACACATTGAGTGTTGTTGTCACTTACCCCAATGGCAAATTTTCTACCATTGCTCAAATCGTTGATTTGAAAACTGTACTCCCTAACACGGTTAGGTTTGGTCTATCTGGTGCTTCAGTAACTGGTACAGCACACGACATCCATTCATGGTCATTCAGCACTTCAAACTTGAAAACAACTATAAGCAGCGCCACAGACAAGTTACAAACCATATAA

Protein sequence

>MS.gene60578.t1

MFFIAPQDTVIPPNSESARFGVVDSKNAYNQFVGVEFDLYTNPYDPKSMRYHIGTNVNSLISLKVMKWEWVTGSLNEVSIAYDSPSNTLSVVVTYPNGKFSTIAQIVDLKTVLPNTVRFGLSGASVTGTAHDIHSWSFSTSNLKTTISSATDKLQTI