Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60748.t1 | XP_024641688.1 | 70.2 | 208 | 25 | 1 | 1 | 171 | 1 | 208 | 4.00E-65 | 257.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60748.t1 | A0A072VZY1 | 67.3 | 217 | 25 | 2 | 1 | 171 | 1 | 217 | 6.0e-63 | 250.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049257 | MS.gene60748 | 0.814684 | 1.36E-51 | -1.69E-46 |
| MS.gene049757 | MS.gene60748 | 0.8262 | 3.09E-54 | -1.69E-46 |
| MS.gene050060 | MS.gene60748 | 0.827568 | 1.46E-54 | -1.69E-46 |
| MS.gene050133 | MS.gene60748 | -0.800617 | 1.33E-48 | -1.69E-46 |
| MS.gene050315 | MS.gene60748 | 0.814384 | 1.58E-51 | -1.69E-46 |
| MS.gene050553 | MS.gene60748 | 0.818881 | 1.55E-52 | -1.69E-46 |
| MS.gene051552 | MS.gene60748 | -0.822488 | 2.31E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene60748 | 0.821671 | 3.57E-53 | -1.69E-46 |
| MS.gene054107 | MS.gene60748 | 0.835743 | 1.40E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene60748 | 0.837351 | 5.47E-57 | -1.69E-46 |
| MS.gene05556 | MS.gene60748 | 0.843757 | 1.15E-58 | -1.69E-46 |
| MS.gene055741 | MS.gene60748 | 0.808896 | 2.47E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene60748 | 0.811117 | 8.22E-51 | -1.69E-46 |
| MS.gene056508 | MS.gene60748 | 0.832791 | 7.73E-56 | -1.69E-46 |
| MS.gene056514 | MS.gene60748 | 0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene057019 | MS.gene60748 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene60748 | -0.814453 | 1.53E-51 | -1.69E-46 |
| MS.gene059717 | MS.gene60748 | 0.844137 | 9.11E-59 | -1.69E-46 |
| MS.gene059868 | MS.gene60748 | 0.835934 | 1.26E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60748.t1 | MTR_1g097430 | 68.224 | 214 | 29 | 3 | 1 | 175 | 1 | 214 | 6.02e-92 | 268 |
| MS.gene60748.t1 | MTR_1g097430 | 68.224 | 214 | 29 | 3 | 1 | 175 | 1 | 214 | 1.29e-91 | 268 |
| MS.gene60748.t1 | MTR_1g097430 | 65.471 | 223 | 29 | 4 | 1 | 175 | 1 | 223 | 6.01e-89 | 261 |
| MS.gene60748.t1 | MTR_1g097430 | 94.872 | 117 | 4 | 1 | 61 | 175 | 54 | 170 | 2.66e-76 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60748.t1 | AT1G22750 | 43.810 | 210 | 79 | 2 | 1 | 171 | 1 | 210 | 1.25e-42 | 142 |
| MS.gene60748.t1 | AT1G22750 | 43.810 | 210 | 79 | 2 | 1 | 171 | 1 | 210 | 1.50e-42 | 142 |
| MS.gene60748.t1 | AT1G22750 | 43.810 | 210 | 79 | 2 | 1 | 171 | 1 | 210 | 1.66e-42 | 142 |
| MS.gene60748.t1 | AT1G22750 | 43.810 | 210 | 79 | 2 | 1 | 171 | 1 | 210 | 1.68e-42 | 142 |
Find 24 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGATTTATGCGGTCTTT+TGG | 0.248345 | 1.2:-71463436 | MS.gene60748:CDS |
| ATTGGGTCAGCTCGATTCTA+TGG | 0.335391 | 1.2:-71465756 | MS.gene60748:CDS |
| GTGATTCTATTGATATGTTT+TGG | 0.353164 | 1.2:-71463413 | MS.gene60748:CDS |
| TTATTTACAAGGAAGCAAAT+TGG | 0.370778 | 1.2:-71465774 | MS.gene60748:CDS |
| TTGCTTACAAAGAATCTAGT+TGG | 0.411156 | 1.2:-71463454 | MS.gene60748:CDS |
| ATCAATGGCGACGATTTCAT+TGG | 0.423681 | 1.2:-71467009 | None:intergenic |
| TATTTACAAGGAAGCAAATT+GGG | 0.429007 | 1.2:-71465773 | MS.gene60748:CDS |
| CAACACCCAAAATGCTGAAA+AGG | 0.432749 | 1.2:+71464522 | None:intergenic |
| TGTTGTCATGCTTGGAACCT+TGG | 0.450047 | 1.2:-71464504 | MS.gene60748:CDS |
| CCAGGCCTGGGTTATTTACA+AGG | 0.474179 | 1.2:-71465785 | MS.gene60748:intron |
| GTATACACTCTTGTCACTGA+TGG | 0.490061 | 1.2:-71464482 | MS.gene60748:CDS |
| CGCAATAGAACATAATACAT+AGG | 0.530191 | 1.2:+71464822 | None:intergenic |
| GCGACGATTTCATTGGCAAA+CGG | 0.534578 | 1.2:-71467002 | MS.gene60748:CDS |
| CCAAAATGTTTACAGGTGGA+TGG | 0.546199 | 1.2:-71463956 | MS.gene60748:intron |
| TGCTTCCTTGTAAATAACCC+AGG | 0.554220 | 1.2:+71465780 | None:intergenic |
| GCAATAGAACATAATACATA+GGG | 0.563470 | 1.2:+71464823 | None:intergenic |
| TTTACGAAAGGGTAAACCAT+CGG | 0.567556 | 1.2:+71466914 | None:intergenic |
| GTTTACACAGTCATAACCGA+TGG | 0.594083 | 1.2:-71466930 | MS.gene60748:CDS |
| GTCAATAGCTCTGTACGGAA+AGG | 0.603621 | 1.2:+71464455 | None:intergenic |
| ACGGAGTCAATAGCTCTGTA+CGG | 0.618927 | 1.2:+71464450 | None:intergenic |
| GTCATCACAAGAGTCTTCAC+AGG | 0.620790 | 1.2:-71464847 | MS.gene60748:CDS |
| AGAATCTAGTTGGATTTATG+CGG | 0.623672 | 1.2:-71463444 | MS.gene60748:CDS |
| ATATTCCAGAGGATGCATGA+AGG | 0.678310 | 1.2:-71463130 | MS.gene60748:intron |
| AGTGACAAGAGTGTATACCA+AGG | 0.744399 | 1.2:+71464487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTAATTTTAAATAT+AGG | - | chr1.2:71464705-71464724 | MS.gene60748:intron | 0.0% |
| !! | AAATAAAAATTACTACAAAA+TGG | + | chr1.2:71463628-71463647 | None:intergenic | 10.0% |
| !! | ATTTAGATAATTCTATTTCA+TGG | - | chr1.2:71465446-71465465 | MS.gene60748:intron | 15.0% |
| !! | TAAACAAACATAAAATAGTA+TGG | + | chr1.2:71466752-71466771 | None:intergenic | 15.0% |
| !! | TAATGTTCCATAAATATATT+TGG | - | chr1.2:71465404-71465423 | MS.gene60748:intron | 15.0% |
| !! | TACTTAATTCTTACTTATAT+TGG | - | chr1.2:71464930-71464949 | MS.gene60748:intron | 15.0% |
| !! | TATAAATTGGAAAATATCAA+AGG | + | chr1.2:71464563-71464582 | None:intergenic | 15.0% |
| !!! | ACTATTTTATGTTTGTTTAT+TGG | - | chr1.2:71466753-71466772 | MS.gene60748:intron | 15.0% |
| !!! | GTAGTAATTTTTATTTAATG+CGG | - | chr1.2:71463632-71463651 | MS.gene60748:intron | 15.0% |
| !!! | TAAACACATATTTACTATTT+TGG | - | chr1.2:71463451-71463470 | MS.gene60748:CDS | 15.0% |
| !!! | TACATTTTCTTTTTGTTAAA+AGG | - | chr1.2:71465740-71465759 | MS.gene60748:CDS | 15.0% |
| !!! | TAGTAATTTTTATTTAATGC+GGG | - | chr1.2:71463633-71463652 | MS.gene60748:intron | 15.0% |
| !!! | TTAAATTTATTTCATTGACT+TGG | - | chr1.2:71466312-71466331 | MS.gene60748:intron | 15.0% |
| !!! | TTTTATTTTATCTTTTGTTG+CGG | - | chr1.2:71463803-71463822 | MS.gene60748:intron | 15.0% |
| !! | AAAAAAATAAGCACCATTAT+AGG | + | chr1.2:71466978-71466997 | None:intergenic | 20.0% |
| !! | AAAAAATAAGCACCATTATA+GGG | + | chr1.2:71466977-71466996 | None:intergenic | 20.0% |
| !! | ACATTAAACATAAAATCATG+TGG | + | chr1.2:71465489-71465508 | None:intergenic | 20.0% |
| !! | CATAAATATATTTGGAGAAA+AGG | - | chr1.2:71465412-71465431 | MS.gene60748:intron | 20.0% |
| !! | TAAACATGACTAATGTTTAA+TGG | - | chr1.2:71464238-71464257 | MS.gene60748:intron | 20.0% |
| !! | TAAATCTTATCTATAATCTG+AGG | - | chr1.2:71464494-71464513 | MS.gene60748:CDS | 20.0% |
| !! | TAGAACAAGGTAATATAAAT+TGG | + | chr1.2:71464576-71464595 | None:intergenic | 20.0% |
| !! | TATAGTATGATGATTGAAAT+CGG | + | chr1.2:71465085-71465104 | None:intergenic | 20.0% |
| !!! | AAAAAGTATTTGTGAATTCA+AGG | - | chr1.2:71466544-71466563 | MS.gene60748:intron | 20.0% |
| !!! | AAATTTTGAAACAAATGTCA+TGG | - | chr1.2:71464616-71464635 | MS.gene60748:intron | 20.0% |
| !!! | ATAATTTTACTTATTGGCTT+TGG | - | chr1.2:71464397-71464416 | MS.gene60748:intron | 20.0% |
| !!! | ATTATATTGAGATCTTTTAG+TGG | + | chr1.2:71466523-71466542 | None:intergenic | 20.0% |
| !!! | CTATGGATAATTTTACTTAT+TGG | - | chr1.2:71464391-71464410 | MS.gene60748:intron | 20.0% |
| !!! | CTTTTCTCCAAATATATTTA+TGG | + | chr1.2:71465414-71465433 | None:intergenic | 20.0% |
| !!! | GATACTTTTTTATTTGATAC+AGG | - | chr1.2:71463333-71463352 | MS.gene60748:intron | 20.0% |
| !!! | TAATGTGATGTTTTCTATAT+AGG | - | chr1.2:71465535-71465554 | MS.gene60748:intron | 20.0% |
| !!! | TATAATGGTGCTTATTTTTT+TGG | - | chr1.2:71466977-71466996 | MS.gene60748:CDS | 20.0% |
| !!! | TGATTGATTTGCATAAAAAA+TGG | - | chr1.2:71464852-71464871 | MS.gene60748:CDS | 20.0% |
| !!! | TTAATCTTAGTAGCTTTAAA+TGG | - | chr1.2:71466258-71466277 | MS.gene60748:intron | 20.0% |
| !!! | TTATTTTACATCCTAGATAA+AGG | + | chr1.2:71466812-71466831 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTGGTTTAAATAC+AGG | - | chr1.2:71464646-71464665 | MS.gene60748:intron | 20.0% |
| !!! | TTGAAAATATGATGGAAAAT+TGG | - | chr1.2:71463911-71463930 | MS.gene60748:intron | 20.0% |
| ! | AAATTGCATCAAACATTAAG+AGG | + | chr1.2:71463565-71463584 | None:intergenic | 25.0% |
| ! | AACTTATGACAAATCATAAG+CGG | + | chr1.2:71463730-71463749 | None:intergenic | 25.0% |
| ! | AGTCATGTTTAAATGAAAAG+TGG | + | chr1.2:71464229-71464248 | None:intergenic | 25.0% |
| ! | ATAAAAATACCACAGAGAAA+TGG | + | chr1.2:71465213-71465232 | None:intergenic | 25.0% |
| ! | ATTATTACAAGAGAGACAAA+AGG | + | chr1.2:71464988-71465007 | None:intergenic | 25.0% |
| ! | CAAAAATTGCACAACAATAT+AGG | + | chr1.2:71465258-71465277 | None:intergenic | 25.0% |
| ! | GCAATAGAACATAATACATA+GGG | + | chr1.2:71465310-71465329 | None:intergenic | 25.0% |
| ! | GCATAAAAAATGGTTAATCT+TGG | - | chr1.2:71464862-71464881 | MS.gene60748:intron | 25.0% |
| ! | GTCATGTTTAAATGAAAAGT+GGG | + | chr1.2:71464228-71464247 | None:intergenic | 25.0% |
| ! | TATACAAAAATCAGCTTAGA+TGG | - | chr1.2:71463483-71463502 | MS.gene60748:intron | 25.0% |
| ! | TATTTACAAGGAAGCAAATT+GGG | - | chr1.2:71464357-71464376 | MS.gene60748:intron | 25.0% |
| ! | TCACATTATATTAGAACTGA+TGG | + | chr1.2:71465523-71465542 | None:intergenic | 25.0% |
| ! | TTATTACAAGAGAGACAAAA+GGG | + | chr1.2:71464987-71465006 | None:intergenic | 25.0% |
| ! | TTATTTAATGCGGGTATTAT+GGG | - | chr1.2:71463642-71463661 | MS.gene60748:intron | 25.0% |
| ! | TTATTTACAAGGAAGCAAAT+TGG | - | chr1.2:71464356-71464375 | MS.gene60748:intron | 25.0% |
| ! | TTTAAATATAGGTGCTCTAA+GGG | - | chr1.2:71464716-71464735 | MS.gene60748:intron | 25.0% |
| ! | TTTATTTAATGCGGGTATTA+TGG | - | chr1.2:71463641-71463660 | MS.gene60748:intron | 25.0% |
| !! | AAGTGTCTTACATCTATTTT+TGG | + | chr1.2:71466381-71466400 | None:intergenic | 25.0% |
| !! | GCTTATCTTTGAAAATATGA+TGG | - | chr1.2:71463903-71463922 | MS.gene60748:intron | 25.0% |
| !! | GTGATTCTATTGATATGTTT+TGG | - | chr1.2:71466717-71466736 | MS.gene60748:intron | 25.0% |
| !! | TCAATGTGAGCTTTTATAAT+AGG | + | chr1.2:71465123-71465142 | None:intergenic | 25.0% |
| !! | TTTTAAATATAGGTGCTCTA+AGG | - | chr1.2:71464715-71464734 | MS.gene60748:intron | 25.0% |
| !!! | AATTTATTTCATTGACTTGG+AGG | - | chr1.2:71466315-71466334 | MS.gene60748:intron | 25.0% |
| !!! | ACAATAGAACACTTTGTTTT+TGG | + | chr1.2:71465573-71465592 | None:intergenic | 25.0% |
| !!! | ACTTTTTTATTTGATACAGG+TGG | - | chr1.2:71463336-71463355 | MS.gene60748:intron | 25.0% |
| !!! | TATTTTTTTGGATATTCCAG+AGG | - | chr1.2:71466989-71467008 | MS.gene60748:CDS | 25.0% |
| !!! | TTTATTTTTCCATTTCTCTG+TGG | - | chr1.2:71465201-71465220 | MS.gene60748:intron | 25.0% |
| AAAACTAGACAAGATAGGAT+TGG | - | chr1.2:71463862-71463881 | MS.gene60748:intron | 30.0% | |
| AATGACATTGTACCCTATAA+TGG | - | chr1.2:71466962-71466981 | MS.gene60748:CDS | 30.0% | |
| AGAATCTAGTTGGATTTATG+CGG | - | chr1.2:71466686-71466705 | MS.gene60748:intron | 30.0% | |
| AGAGAGTAGATTATGTAGTA+AGG | - | chr1.2:71463954-71463973 | MS.gene60748:intron | 30.0% | |
| AGCGAAGTTAAGTACTATTA+TGG | + | chr1.2:71465778-71465797 | None:intergenic | 30.0% | |
| ATTATATGCAAACTGCTCAT+TGG | - | chr1.2:71465904-71465923 | MS.gene60748:intron | 30.0% | |
| ATTCGAAAACACCTTTATCT+AGG | - | chr1.2:71466798-71466817 | MS.gene60748:intron | 30.0% | |
| CAGATAGATATTGGGTATTA+TGG | - | chr1.2:71464678-71464697 | MS.gene60748:intron | 30.0% | |
| CGCAATAGAACATAATACAT+AGG | + | chr1.2:71465311-71465330 | None:intergenic | 30.0% | |
| CTGAAGTACAGATAGATATT+GGG | - | chr1.2:71464670-71464689 | MS.gene60748:intron | 30.0% | |
| GATAACTTATGAAAGCTGTT+TGG | - | chr1.2:71463780-71463799 | MS.gene60748:intron | 30.0% | |
| GCGAAGTTAAGTACTATTAT+GGG | + | chr1.2:71465777-71465796 | None:intergenic | 30.0% | |
| GTTACAAGTATAGTAGAACA+AGG | + | chr1.2:71464589-71464608 | None:intergenic | 30.0% | |
| TCTATGTACTGTCTACTATA+TGG | - | chr1.2:71465852-71465871 | MS.gene60748:intron | 30.0% | |
| TTGCTTACAAAGAATCTAGT+TGG | - | chr1.2:71466676-71466695 | MS.gene60748:intron | 30.0% | |
| TTTCCATAAGCTATCTCAAA+CGG | + | chr1.2:71463707-71463726 | None:intergenic | 30.0% | |
| ! | AAAAACTCTGTTCAGTGTTT+TGG | - | chr1.2:71463154-71463173 | MS.gene60748:intron | 30.0% |
| ! | AAAACTCTGTTCAGTGTTTT+GGG | - | chr1.2:71463155-71463174 | MS.gene60748:intron | 30.0% |
| ! | AAGAATCCTTTTCAGCATTT+TGG | - | chr1.2:71465602-71465621 | MS.gene60748:intron | 30.0% |
| ! | AGAATCCTTTTCAGCATTTT+GGG | - | chr1.2:71465603-71465622 | MS.gene60748:intron | 30.0% |
| ! | ATATGATGGAAAATTGGCTT+AGG | - | chr1.2:71463917-71463936 | MS.gene60748:CDS | 30.0% |
| ! | CATGGTTTCGTTTTCTTTTT+TGG | - | chr1.2:71464634-71464653 | MS.gene60748:intron | 30.0% |
| ! | CTCTTGTAATAATAGCTCTA+CGG | - | chr1.2:71464995-71465014 | MS.gene60748:intron | 30.0% |
| ! | TCTGAAGTACAGATAGATAT+TGG | - | chr1.2:71464669-71464688 | MS.gene60748:intron | 30.0% |
| ! | TGATGTTTTCTATATAGGAG+TGG | - | chr1.2:71465540-71465559 | MS.gene60748:intron | 30.0% |
| ! | TTTTTGTAGACATACTTGTG+TGG | + | chr1.2:71465338-71465357 | None:intergenic | 30.0% |
| !! | TTTTATTTGATACAGGTGGA+TGG | - | chr1.2:71463340-71463359 | MS.gene60748:intron | 30.0% |
| !!! | TTCTATTGATATGTTTTGGC+AGG | - | chr1.2:71466721-71466740 | MS.gene60748:intron | 30.0% |
| !!! | TTTTACTTATTGGCTTTGGA+AGG | - | chr1.2:71464401-71464420 | MS.gene60748:intron | 30.0% |
| AAGCTCACATTGAAGTTTCT+AGG | - | chr1.2:71465130-71465149 | MS.gene60748:intron | 35.0% | |
| AAGTTATCCTGAAGAGCTTA+TGG | + | chr1.2:71463768-71463787 | None:intergenic | 35.0% | |
| ACAAGCTCCAAAATGTTTAC+AGG | - | chr1.2:71466167-71466186 | MS.gene60748:intron | 35.0% | |
| ACCAATAGATAAGCTGAAAC+AGG | + | chr1.2:71463668-71463687 | None:intergenic | 35.0% | |
| AGTAGACAGTACATAGAATG+TGG | + | chr1.2:71465849-71465868 | None:intergenic | 35.0% | |
| AGTGAGAAGTTCTTTACGAA+AGG | + | chr1.2:71463231-71463250 | None:intergenic | 35.0% | |
| ATAAGCATGAACTGCTTGAA+TGG | - | chr1.2:71465713-71465732 | MS.gene60748:intron | 35.0% | |
| CATGCTTATATGAGCACTTA+CGG | + | chr1.2:71465702-71465721 | None:intergenic | 35.0% | |
| CCTAATTGAAATATTCGCCA+AGG | - | chr1.2:71466025-71466044 | MS.gene60748:intron | 35.0% | |
| CCTTGGCGAATATTTCAATT+AGG | + | chr1.2:71466028-71466047 | None:intergenic | 35.0% | |
| CTGACATAAAGTCACATGTT+TGG | - | chr1.2:71464903-71464922 | MS.gene60748:intron | 35.0% | |
| GTGAGAAGTTCTTTACGAAA+GGG | + | chr1.2:71463230-71463249 | None:intergenic | 35.0% | |
| GTGCTAAAACTAGACAAGAT+AGG | - | chr1.2:71463857-71463876 | MS.gene60748:intron | 35.0% | |
| GTTAAGTACTATTATGGGAG+AGG | + | chr1.2:71465772-71465791 | None:intergenic | 35.0% | |
| TTTACGAAAGGGTAAACCAT+CGG | + | chr1.2:71463219-71463238 | None:intergenic | 35.0% | |
| ! | AAACCGTTTGAGATAGCTTA+TGG | - | chr1.2:71463701-71463720 | MS.gene60748:intron | 35.0% |
| ! | AGGCATCTCTTTTTAACAAG+AGG | - | chr1.2:71464523-71464542 | MS.gene60748:CDS | 35.0% |
| ! | TCTATAATCTGAGGTATGAG+AGG | - | chr1.2:71464503-71464522 | MS.gene60748:CDS | 35.0% |
| ! | TCTTGTCTAGGATCGTTTAA+AGG | - | chr1.2:71465163-71465182 | MS.gene60748:intron | 35.0% |
| ! | TTGGATTTATGCGGTCTTTT+GGG | - | chr1.2:71466695-71466714 | MS.gene60748:intron | 35.0% |
| !! | AGTACTTAACTTCGCTTTTC+TGG | - | chr1.2:71465782-71465801 | MS.gene60748:CDS | 35.0% |
| AGAGCTGATGAAACTTCAGT+TGG | + | chr1.2:71464300-71464319 | None:intergenic | 40.0% | |
| AGCTCCAAAATGTTTACAGG+TGG | - | chr1.2:71466170-71466189 | MS.gene60748:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | - | chr1.2:71463970-71463989 | MS.gene60748:intron | 40.0% | |
| ATAGGATTGGAGAGAGAGTT+GGG | - | chr1.2:71463875-71463894 | MS.gene60748:intron | 40.0% | |
| ATATTCCAGAGGATGCATGA+AGG | - | chr1.2:71467000-71467019 | MS.gene60748:CDS | 40.0% | |
| ATCAGATCCATGTATCCACT+TGG | + | chr1.2:71464780-71464799 | None:intergenic | 40.0% | |
| CAACACCCAAAATGCTGAAA+AGG | + | chr1.2:71465611-71465630 | None:intergenic | 40.0% | |
| CATAGAATGTGGAATGTGAG+TGG | + | chr1.2:71465838-71465857 | None:intergenic | 40.0% | |
| CCAAAATGTTTACAGGTGGA+TGG | - | chr1.2:71466174-71466193 | MS.gene60748:intron | 40.0% | |
| CCAATTTCCAAGTGGATACA+TGG | - | chr1.2:71464770-71464789 | MS.gene60748:intron | 40.0% | |
| CCATGTATCCACTTGGAAAT+TGG | + | chr1.2:71464773-71464792 | None:intergenic | 40.0% | |
| CTTATCCCACTATGTAGAGT+CGG | + | chr1.2:71464120-71464139 | None:intergenic | 40.0% | |
| CTTATCTCCATAAGCTCTTC+AGG | - | chr1.2:71463758-71463777 | MS.gene60748:intron | 40.0% | |
| CTTATGCATAGATTGCAGTG+TGG | - | chr1.2:71465948-71465967 | MS.gene60748:intron | 40.0% | |
| CTTCATTCAATTCCAGGTCT+GGG | - | chr1.2:71466653-71466672 | MS.gene60748:intron | 40.0% | |
| GCAACTCTTCATTCAATTCC+AGG | - | chr1.2:71466647-71466666 | MS.gene60748:intron | 40.0% | |
| GCCTGTTTCAGCTTATCTAT+TGG | - | chr1.2:71463664-71463683 | MS.gene60748:intron | 40.0% | |
| GGCTGTATCTTATCTTGTCT+AGG | - | chr1.2:71465151-71465170 | MS.gene60748:intron | 40.0% | |
| GTATACACTCTTGTCACTGA+TGG | - | chr1.2:71465648-71465667 | MS.gene60748:intron | 40.0% | |
| GTTCAGCAGAAGGAAATTGA+CGG | + | chr1.2:71464206-71464225 | None:intergenic | 40.0% | |
| GTTTACACAGTCATAACCGA+TGG | - | chr1.2:71463200-71463219 | MS.gene60748:intron | 40.0% | |
| TCTTCATTCAATTCCAGGTC+TGG | - | chr1.2:71466652-71466671 | MS.gene60748:intron | 40.0% | |
| TGCTTCCTTGTAAATAACCC+AGG | + | chr1.2:71464353-71464372 | None:intergenic | 40.0% | |
| TGGAAAGAGATTCTGACACA+AGG | + | chr1.2:71464280-71464299 | None:intergenic | 40.0% | |
| TTATATCCCCGTATTGCACT+TGG | + | chr1.2:71466434-71466453 | None:intergenic | 40.0% | |
| TTATTCCTTCATGCATCCTC+TGG | + | chr1.2:71467008-71467027 | None:intergenic | 40.0% | |
| TTGTGCTTCCAAGTGCAATA+CGG | - | chr1.2:71466423-71466442 | MS.gene60748:intron | 40.0% | |
| ! | AGCACAAGTGACAAGTTTTC+AGG | + | chr1.2:71463591-71463610 | None:intergenic | 40.0% |
| ! | AGTGACAAGAGTGTATACCA+AGG | + | chr1.2:71465646-71465665 | None:intergenic | 40.0% |
| ! | CCATCCACCTGTAAACATTT+TGG | + | chr1.2:71466177-71466196 | None:intergenic | 40.0% |
| ! | GCAAACTGCTCATTGGTAAT+TGG | - | chr1.2:71465911-71465930 | MS.gene60748:intron | 40.0% |
| ! | GTTGGATTTATGCGGTCTTT+TGG | - | chr1.2:71466694-71466713 | MS.gene60748:intron | 40.0% |
| ! | TATATTTGGAGAAAAGGCGC+AGG | - | chr1.2:71465418-71465437 | MS.gene60748:intron | 40.0% |
| ! | TATCTTTTGTTGCGGAGATG+AGG | - | chr1.2:71463811-71463830 | MS.gene60748:intron | 40.0% |
| ! | TGAGATCTTTTAGTGGTCAC+TGG | + | chr1.2:71466516-71466535 | None:intergenic | 40.0% |
| ! | TGATGGAAAATTGGCTTAGG+TGG | - | chr1.2:71463920-71463939 | MS.gene60748:CDS | 40.0% |
| !! | ATTTTGGGTGTTGTCATGCT+TGG | - | chr1.2:71465618-71465637 | MS.gene60748:intron | 40.0% |
| !! | TCAGCAGACTTGTTTTCGTT+TGG | - | chr1.2:71466613-71466632 | MS.gene60748:intron | 40.0% |
| !!! | GGCAGTCGCTTATCTTTTTT+GGG | - | chr1.2:71466138-71466157 | MS.gene60748:intron | 40.0% |
| !!! | TGGCAGTCGCTTATCTTTTT+TGG | - | chr1.2:71466137-71466156 | MS.gene60748:intron | 40.0% |
| AAAACAGAGCAGAGAGAGAG+AGG | + | chr1.2:71463269-71463288 | None:intergenic | 45.0% | |
| AAACAGAGCAGAGAGAGAGA+GGG | + | chr1.2:71463268-71463287 | None:intergenic | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | - | chr1.2:71463973-71463992 | MS.gene60748:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | - | chr1.2:71463974-71463993 | MS.gene60748:intron | 45.0% | |
| ATCCTGTCAGCTTGCACTAT+AGG | + | chr1.2:71465059-71465078 | None:intergenic | 45.0% | |
| ATTGGGTCAGCTCGATTCTA+TGG | - | chr1.2:71464374-71464393 | MS.gene60748:intron | 45.0% | |
| GACTCGTTCCAATTTCCAAG+TGG | - | chr1.2:71464762-71464781 | MS.gene60748:intron | 45.0% | |
| GATAGGATTGGAGAGAGAGT+TGG | - | chr1.2:71463874-71463893 | MS.gene60748:intron | 45.0% | |
| GCGACGATTTCATTGGCAAA+CGG | - | chr1.2:71463128-71463147 | MS.gene60748:intron | 45.0% | |
| GTCATCACAAGAGTCTTCAC+AGG | - | chr1.2:71465283-71465302 | MS.gene60748:intron | 45.0% | |
| TAGGATTGGAGAGAGAGTTG+GGG | - | chr1.2:71463876-71463895 | MS.gene60748:intron | 45.0% | |
| TGTGCTTCCAAGTGCAATAC+GGG | - | chr1.2:71466424-71466443 | MS.gene60748:intron | 45.0% | |
| TGTTGTCATGCTTGGAACCT+TGG | - | chr1.2:71465626-71465645 | MS.gene60748:intron | 45.0% | |
| TTATGCACAGCTTCTGCTTG+TGG | - | chr1.2:71466117-71466136 | MS.gene60748:intron | 45.0% | |
| ! | ACGGAGTCAATAGCTCTGTA+CGG | + | chr1.2:71465683-71465702 | None:intergenic | 45.0% |
| ! | ATGTAGCCGACTCTACATAG+TGG | - | chr1.2:71464111-71464130 | MS.gene60748:intron | 45.0% |
| ! | CGACTCTACATAGTGGGATA+AGG | - | chr1.2:71464118-71464137 | MS.gene60748:intron | 45.0% |
| ! | CTACAAAATGGAAGCACACG+AGG | + | chr1.2:71463616-71463635 | None:intergenic | 45.0% |
| ! | GTCAATAGCTCTGTACGGAA+AGG | + | chr1.2:71465678-71465697 | None:intergenic | 45.0% |
| ! | GTTTTTCTGTCACACCAACC+AGG | - | chr1.2:71464327-71464346 | MS.gene60748:intron | 45.0% |
| ! | TGAAAAGTGGGTTCAGCAGA+AGG | + | chr1.2:71464216-71464235 | None:intergenic | 45.0% |
| ! | TGTAGCCGACTCTACATAGT+GGG | - | chr1.2:71464112-71464131 | MS.gene60748:intron | 45.0% |
| !!! | ACTTCGCTTTTCTGGTTCAG+TGG | - | chr1.2:71465790-71465809 | MS.gene60748:intron | 45.0% |
| !!! | CTTCGCTTTTCTGGTTCAGT+GGG | - | chr1.2:71465791-71465810 | MS.gene60748:intron | 45.0% |
| !!! | AATAATTTTAATTTTATTAC+AGG | - | chr1.2:71466827-71466846 | MS.gene60748:intron | 5.0% |
| AGACAGTGCATGTGTTGCCT+TGG | + | chr1.2:71466045-71466064 | None:intergenic | 50.0% | |
| CACCTATAGTGCAAGCTGAC+AGG | - | chr1.2:71465054-71465073 | MS.gene60748:intron | 50.0% | |
| CCAGGCCTGGGTTATTTACA+AGG | - | chr1.2:71464345-71464364 | MS.gene60748:intron | 50.0% | |
| CCTTGTAAATAACCCAGGCC+TGG | + | chr1.2:71464348-71464367 | None:intergenic | 50.0% | |
| CTATAGGTGCAACAGGTGCT+TGG | + | chr1.2:71465043-71465062 | None:intergenic | 50.0% | |
| CTTTGTAAGCAACCCAGACC+TGG | + | chr1.2:71466668-71466687 | None:intergenic | 50.0% | |
| GAGAGAGGGAGGAGAGATTA+CGG | + | chr1.2:71463254-71463273 | None:intergenic | 50.0% | |
| GATCTTCTTCTGCCTCTCTC+TGG | + | chr1.2:71464011-71464030 | None:intergenic | 50.0% | |
| GCTTGCACTATAGGTGCAAC+AGG | + | chr1.2:71465050-71465069 | None:intergenic | 50.0% | |
| GTAAATAACCCAGGCCTGGT+TGG | + | chr1.2:71464344-71464363 | None:intergenic | 50.0% | |
| GTCGTCAAATCACCAGAGAG+AGG | - | chr1.2:71463996-71464015 | MS.gene60748:intron | 50.0% | |
| GTGCTTCCAAGTGCAATACG+GGG | - | chr1.2:71466425-71466444 | MS.gene60748:intron | 50.0% | |
| TGTTGCGGAGATGAGGATTG+AGG | - | chr1.2:71463818-71463837 | MS.gene60748:intron | 50.0% | |
| CAGAGCAGAGAGAGAGAGGG+AGG | + | chr1.2:71463265-71463284 | None:intergenic | 60.0% | |
| CTGTCACACCAACCAGGCCT+GGG | - | chr1.2:71464333-71464352 | MS.gene60748:intron | 60.0% | |
| TCTGTCACACCAACCAGGCC+TGG | - | chr1.2:71464332-71464351 | MS.gene60748:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 71463125 | 71467027 | 71463125 | ID=MS.gene60748 |
| chr1.2 | mRNA | 71463125 | 71467027 | 71463125 | ID=MS.gene60748.t1;Parent=MS.gene60748 |
| chr1.2 | exon | 71466919 | 71467027 | 71466919 | ID=MS.gene60748.t1.exon1;Parent=MS.gene60748.t1 |
| chr1.2 | CDS | 71466919 | 71467027 | 71466919 | ID=cds.MS.gene60748.t1;Parent=MS.gene60748.t1 |
| chr1.2 | exon | 71465730 | 71465803 | 71465730 | ID=MS.gene60748.t1.exon2;Parent=MS.gene60748.t1 |
| chr1.2 | CDS | 71465730 | 71465803 | 71465730 | ID=cds.MS.gene60748.t1;Parent=MS.gene60748.t1 |
| chr1.2 | exon | 71464810 | 71464871 | 71464810 | ID=MS.gene60748.t1.exon3;Parent=MS.gene60748.t1 |
| chr1.2 | CDS | 71464810 | 71464871 | 71464810 | ID=cds.MS.gene60748.t1;Parent=MS.gene60748.t1 |
| chr1.2 | exon | 71464452 | 71464595 | 71464452 | ID=MS.gene60748.t1.exon4;Parent=MS.gene60748.t1 |
| chr1.2 | CDS | 71464452 | 71464595 | 71464452 | ID=cds.MS.gene60748.t1;Parent=MS.gene60748.t1 |
| chr1.2 | exon | 71463912 | 71463963 | 71463912 | ID=MS.gene60748.t1.exon5;Parent=MS.gene60748.t1 |
| chr1.2 | CDS | 71463912 | 71463963 | 71463912 | ID=cds.MS.gene60748.t1;Parent=MS.gene60748.t1 |
| chr1.2 | exon | 71463410 | 71463483 | 71463410 | ID=MS.gene60748.t1.exon6;Parent=MS.gene60748.t1 |
| chr1.2 | CDS | 71463410 | 71463483 | 71463410 | ID=cds.MS.gene60748.t1;Parent=MS.gene60748.t1 |
| chr1.2 | exon | 71463125 | 71463143 | 71463125 | ID=MS.gene60748.t1.exon7;Parent=MS.gene60748.t1 |
| chr1.2 | CDS | 71463125 | 71463143 | 71463125 | ID=cds.MS.gene60748.t1;Parent=MS.gene60748.t1 |
| Gene Sequence |
| Protein sequence |
