Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61993.t1 | XP_003621581.1 | 95.1 | 632 | 30 | 1 | 1 | 631 | 1 | 632 | 0.00E+00 | 1214.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61993.t1 | Q9SI52 | 60.5 | 658 | 215 | 10 | 6 | 631 | 6 | 650 | 5.6e-211 | 735.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61993.t1 | A2Q630 | 95.1 | 632 | 30 | 1 | 1 | 631 | 1 | 632 | 0.0e+00 | 1214.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053079 | MS.gene61993 | 0.816381 | 5.69E-52 | -1.69E-46 |
MS.gene053226 | MS.gene61993 | 0.804901 | 1.73E-49 | -1.69E-46 |
MS.gene053272 | MS.gene61993 | -0.852729 | 3.81E-61 | -1.69E-46 |
MS.gene053542 | MS.gene61993 | 0.801508 | 8.71E-49 | -1.69E-46 |
MS.gene05364 | MS.gene61993 | 0.817216 | 3.70E-52 | -1.69E-46 |
MS.gene053931 | MS.gene61993 | 0.806862 | 6.69E-50 | -1.69E-46 |
MS.gene054142 | MS.gene61993 | 0.808406 | 3.15E-50 | -1.69E-46 |
MS.gene056363 | MS.gene61993 | 0.811561 | 6.58E-51 | -1.69E-46 |
MS.gene05686 | MS.gene61993 | 0.826921 | 2.08E-54 | -1.69E-46 |
MS.gene057208 | MS.gene61993 | 0.816046 | 6.77E-52 | -1.69E-46 |
MS.gene057855 | MS.gene61993 | 0.812823 | 3.49E-51 | -1.69E-46 |
MS.gene058009 | MS.gene61993 | 0.809028 | 2.32E-50 | -1.69E-46 |
MS.gene058781 | MS.gene61993 | 0.834859 | 2.35E-56 | -1.69E-46 |
MS.gene058783 | MS.gene61993 | 0.836278 | 1.03E-56 | -1.69E-46 |
MS.gene059778 | MS.gene61993 | 0.801007 | 1.10E-48 | -1.69E-46 |
MS.gene060935 | MS.gene61993 | 0.831429 | 1.68E-55 | -1.69E-46 |
MS.gene060937 | MS.gene61993 | 0.81979 | 9.65E-53 | -1.69E-46 |
MS.gene061100 | MS.gene61993 | 0.823462 | 1.37E-53 | -1.69E-46 |
MS.gene061160 | MS.gene61993 | 0.818732 | 1.68E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61993.t1 | MTR_7g017360 | 95.095 | 632 | 30 | 1 | 1 | 631 | 1 | 632 | 0.0 | 1223 |
MS.gene61993.t1 | MTR_0009s0120 | 66.446 | 605 | 192 | 6 | 35 | 631 | 39 | 640 | 0.0 | 779 |
MS.gene61993.t1 | MTR_8g066090 | 62.751 | 647 | 218 | 11 | 1 | 631 | 1 | 640 | 0.0 | 758 |
MS.gene61993.t1 | MTR_8g099565 | 39.799 | 299 | 143 | 8 | 148 | 426 | 267 | 548 | 3.31e-58 | 206 |
MS.gene61993.t1 | MTR_5g009120 | 39.542 | 306 | 159 | 7 | 155 | 446 | 261 | 554 | 4.05e-58 | 206 |
MS.gene61993.t1 | MTR_8g027610 | 38.284 | 303 | 154 | 8 | 140 | 426 | 262 | 547 | 2.61e-55 | 198 |
MS.gene61993.t1 | MTR_3g091400 | 39.535 | 301 | 145 | 9 | 147 | 426 | 250 | 534 | 2.28e-54 | 195 |
MS.gene61993.t1 | MTR_7g117395 | 37.299 | 311 | 162 | 8 | 132 | 426 | 254 | 547 | 1.31e-53 | 193 |
MS.gene61993.t1 | MTR_7g105910 | 89.796 | 49 | 5 | 0 | 547 | 595 | 2 | 50 | 1.22e-21 | 88.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61993.t1 | AT2G03890 | 61.295 | 664 | 210 | 12 | 1 | 631 | 1 | 650 | 0.0 | 749 |
MS.gene61993.t1 | AT1G13640 | 61.406 | 640 | 208 | 12 | 13 | 631 | 1 | 622 | 0.0 | 734 |
MS.gene61993.t1 | AT1G13640 | 61.406 | 640 | 208 | 12 | 13 | 631 | 1 | 622 | 0.0 | 734 |
MS.gene61993.t1 | AT1G26270 | 61.346 | 639 | 220 | 11 | 6 | 631 | 6 | 630 | 0.0 | 725 |
MS.gene61993.t1 | AT2G03890 | 57.014 | 442 | 158 | 9 | 212 | 631 | 99 | 530 | 6.45e-153 | 451 |
MS.gene61993.t1 | AT2G03890 | 56.731 | 104 | 30 | 3 | 1 | 93 | 1 | 100 | 2.04e-22 | 101 |
MS.gene61993.t1 | AT3G56600 | 42.402 | 533 | 245 | 14 | 109 | 631 | 53 | 533 | 3.19e-122 | 373 |
MS.gene61993.t1 | AT3G56600 | 42.402 | 533 | 245 | 14 | 109 | 631 | 56 | 536 | 3.89e-122 | 373 |
MS.gene61993.t1 | AT3G56600 | 42.402 | 533 | 245 | 14 | 109 | 631 | 56 | 536 | 3.89e-122 | 373 |
MS.gene61993.t1 | AT2G40850 | 40.441 | 544 | 255 | 12 | 108 | 631 | 67 | 561 | 9.06e-118 | 362 |
MS.gene61993.t1 | AT5G24240 | 41.611 | 298 | 144 | 7 | 146 | 426 | 244 | 528 | 4.04e-60 | 211 |
MS.gene61993.t1 | AT5G24240 | 41.611 | 298 | 144 | 7 | 146 | 426 | 244 | 528 | 4.04e-60 | 211 |
MS.gene61993.t1 | AT2G46500 | 34.272 | 426 | 218 | 15 | 43 | 426 | 115 | 520 | 9.56e-57 | 201 |
MS.gene61993.t1 | AT2G46500 | 34.272 | 426 | 218 | 15 | 43 | 426 | 115 | 520 | 9.56e-57 | 201 |
MS.gene61993.t1 | AT2G46500 | 30.769 | 299 | 149 | 13 | 43 | 299 | 115 | 397 | 3.40e-21 | 97.1 |
Find 138 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCTTCTGAGACGAAATT+TGG | 0.171514 | 7.2:-80600600 | MS.gene61993:CDS |
TCTTTGTCTACCTGAAAATT+TGG | 0.227445 | 7.2:-80600937 | MS.gene61993:CDS |
TGAAGCATGCTTGCGGGTTT+TGG | 0.247060 | 7.2:-80600781 | MS.gene61993:CDS |
GGTTGCTCCGATTTGTTATC+TGG | 0.247484 | 7.2:-80601548 | MS.gene61993:CDS |
TTGCTTATTTGCTTCTTGTT+TGG | 0.259209 | 7.2:+80601167 | None:intergenic |
TACCAACTCCATGGGAAAAT+TGG | 0.273301 | 7.2:-80600385 | MS.gene61993:CDS |
AGTGGACCGATTGAGATTAT+TGG | 0.279156 | 7.2:-80601569 | MS.gene61993:CDS |
GATATTGTCGTGGCAATAAA+AGG | 0.290087 | 7.2:-80601506 | MS.gene61993:CDS |
ACTGAAACCGGGTGTGTTCT+AGG | 0.312214 | 7.2:-80601824 | MS.gene61993:CDS |
GGCATCCTAGTGAATGTTTC+GGG | 0.314256 | 7.2:-80601898 | MS.gene61993:CDS |
CAATGGATCCATTCAAAATA+AGG | 0.315349 | 7.2:+80600909 | None:intergenic |
ACAAAACCTTTCGGATTGTT+TGG | 0.356159 | 7.2:+80601371 | None:intergenic |
TTGGACAACCAGGACTTAAA+AGG | 0.364302 | 7.2:-80601337 | MS.gene61993:CDS |
TCAGATAGCTTTGAAATATC+AGG | 0.369247 | 7.2:+80600360 | None:intergenic |
TGTAAACAGGTGTCGGAATC+AGG | 0.370248 | 7.2:+80601950 | None:intergenic |
GTCAGGAAGCTTGATGGGCT+TGG | 0.371317 | 7.2:-80600999 | MS.gene61993:CDS |
ATTTATAATACCTCTAAAAC+TGG | 0.373454 | 7.2:+80600070 | None:intergenic |
CGCCATCTCGTGATGTAAAC+AGG | 0.373918 | 7.2:+80601937 | None:intergenic |
CTCAAAGAAGCAGCAGCCTT+TGG | 0.375023 | 7.2:-80600741 | MS.gene61993:CDS |
TCTTTGCAATTAACAAAAGC+TGG | 0.375606 | 7.2:+80600138 | None:intergenic |
CCTCCTAACCCACTCTGAAC+AGG | 0.376495 | 7.2:+80601467 | None:intergenic |
GATTCGTGAAGCATGCTTGC+GGG | 0.378122 | 7.2:-80600787 | MS.gene61993:CDS |
ATGTTTCGGGAATAAGAAAA+TGG | 0.386482 | 7.2:-80601885 | MS.gene61993:CDS |
CAAGCATGCTTCACGAATCA+TGG | 0.394121 | 7.2:+80600791 | None:intergenic |
TTCGGATTGTTTGGTGCATA+AGG | 0.397864 | 7.2:+80601380 | None:intergenic |
CAAAGGAGTGGATCATTAGT+AGG | 0.398287 | 7.2:-80600282 | MS.gene61993:CDS |
GTATTTGTACAGACTGAAAC+CGG | 0.404184 | 7.2:-80601836 | MS.gene61993:CDS |
GGGCATCCTAGTGAATGTTT+CGG | 0.408416 | 7.2:-80601899 | MS.gene61993:CDS |
AATGTTAATGATAGGGTCAA+TGG | 0.409025 | 7.2:-80601200 | MS.gene61993:CDS |
GTTATCTGGAACTAAACAAC+TGG | 0.409758 | 7.2:-80601534 | MS.gene61993:CDS |
TAGTTTAGAAAGCTTGAGTC+TGG | 0.411438 | 7.2:+80600452 | None:intergenic |
GGAAAGTGTGATAGAGGAGG+AGG | 0.411807 | 7.2:-80600427 | MS.gene61993:CDS |
CTTCTTGTCAGGAAGCTTGA+TGG | 0.414805 | 7.2:-80601005 | MS.gene61993:CDS |
ACTCCTGTGCAGAAAGTTCC+TGG | 0.417901 | 7.2:+80601646 | None:intergenic |
GGTCTTTGTCTAGCAGAAAT+CGG | 0.425556 | 7.2:-80600720 | MS.gene61993:CDS |
TGGAACTAAACAACTGGTTA+AGG | 0.430652 | 7.2:-80601528 | MS.gene61993:CDS |
CAAAGGCTGCTGCTTCTTTG+AGG | 0.431918 | 7.2:+80600742 | None:intergenic |
ACATATTAGCTCAAGCTCAC+TGG | 0.437474 | 7.2:+80600656 | None:intergenic |
ACTAGAGGAAAGTGTGATAG+AGG | 0.444353 | 7.2:-80600433 | MS.gene61993:CDS |
TACTGTGAAGAGGAAATTAC+AGG | 0.448807 | 7.2:-80601771 | MS.gene61993:CDS |
TCATTAGTAGGGACATCATC+TGG | 0.450706 | 7.2:-80600270 | MS.gene61993:CDS |
TCACTGTTGCTGCTGTTCAC+AGG | 0.458871 | 7.2:-80601079 | MS.gene61993:CDS |
TTCTTGTCAGGAAGCTTGAT+GGG | 0.460085 | 7.2:-80601004 | MS.gene61993:CDS |
ATCCCTGTTCAGAGTGGGTT+AGG | 0.467828 | 7.2:-80601470 | MS.gene61993:CDS |
TGATTCAGAAATGCTTAGAA+TGG | 0.468632 | 7.2:-80600820 | MS.gene61993:CDS |
CTTTGCAATTAACAAAAGCT+GGG | 0.469980 | 7.2:+80600139 | None:intergenic |
ATGCAGGAAATCTTCTTGTC+AGG | 0.471861 | 7.2:-80601016 | MS.gene61993:CDS |
GAGGAAAGTTCACTTATTTG+CGG | 0.473727 | 7.2:-80601728 | MS.gene61993:CDS |
GCTTTACCAACAAAACCTTT+CGG | 0.473888 | 7.2:+80601362 | None:intergenic |
TGAATGGATCCATTGGCCTC+AGG | 0.478199 | 7.2:-80600901 | MS.gene61993:CDS |
TGGGCTTGGAAGGTTTGATC+AGG | 0.478402 | 7.2:-80600985 | MS.gene61993:CDS |
CATATTAGCTCAAGCTCACT+GGG | 0.479364 | 7.2:+80600657 | None:intergenic |
TGAGTTCATCGTCAGTGAAA+GGG | 0.479565 | 7.2:+80600871 | None:intergenic |
ATAAGTGAACTTTCCTCAGT+TGG | 0.482652 | 7.2:+80601734 | None:intergenic |
TAAGTGAACTTTCCTCAGTT+GGG | 0.484582 | 7.2:+80601735 | None:intergenic |
TCAGTGAGGGTTGGAGAGAC+GGG | 0.487835 | 7.2:-80601314 | MS.gene61993:CDS |
TTTAGTTCCAGATAACAAAT+CGG | 0.488060 | 7.2:+80601541 | None:intergenic |
ATGGCGGCTGCAACTTTCAA+AGG | 0.492053 | 7.2:-80601920 | MS.gene61993:CDS |
GCATTTCTGAATCACGAAAC+GGG | 0.492416 | 7.2:+80600829 | None:intergenic |
GTCAGTGAGGGTTGGAGAGA+CGG | 0.493512 | 7.2:-80601315 | MS.gene61993:CDS |
AAAATGGAAAGAAAGCCTTC+TGG | 0.496190 | 7.2:-80601869 | MS.gene61993:CDS |
AAGTTCCTGGTGAGAAGAAG+TGG | 0.500200 | 7.2:+80601659 | None:intergenic |
CAAAATGATCATGGTCAAGA+AGG | 0.505620 | 7.2:+80601270 | None:intergenic |
GGAAGCTTGATGGGCTTGGA+AGG | 0.512026 | 7.2:-80600995 | MS.gene61993:CDS |
TTGAGTTCATCGTCAGTGAA+AGG | 0.514657 | 7.2:+80600870 | None:intergenic |
GATCCCTACCGGTCGGAGAA+AGG | 0.516811 | 7.2:+80601609 | None:intergenic |
AGCATTTCTGAATCACGAAA+CGG | 0.519474 | 7.2:+80600828 | None:intergenic |
TTCACTTATTTGCGGCGACA+CGG | 0.519893 | 7.2:-80601720 | MS.gene61993:CDS |
TGGGAGAAGTCTGCAGAACT+CGG | 0.527301 | 7.2:-80600313 | MS.gene61993:CDS |
TCACCAGGAACTTTCTGCAC+AGG | 0.528141 | 7.2:-80601649 | MS.gene61993:CDS |
CGGTAGGGATCTTCAGCATA+GGG | 0.528757 | 7.2:-80601597 | MS.gene61993:CDS |
ATTCTCCACTTCTTCTCACC+AGG | 0.528800 | 7.2:-80601664 | MS.gene61993:CDS |
AGAGGAAAGTGTGATAGAGG+AGG | 0.529426 | 7.2:-80600430 | MS.gene61993:CDS |
GAGCAACCAATAATCTCAAT+CGG | 0.540268 | 7.2:+80601563 | None:intergenic |
GCATAAGGTTCCTCGTCAGT+TGG | 0.541246 | 7.2:+80601395 | None:intergenic |
GAAAGTGTGATAGAGGAGGA+GGG | 0.541248 | 7.2:-80600426 | MS.gene61993:CDS |
GCCTTCTACTTCTCTCGTGA+AGG | 0.541846 | 7.2:-80601240 | MS.gene61993:CDS |
AAGAAAGGAATGTGGGAAAG+AGG | 0.543039 | 7.2:-80600119 | MS.gene61993:CDS |
AAATCGGCGATATGATGAGT+AGG | 0.546958 | 7.2:-80600704 | MS.gene61993:CDS |
TGATTCGTGAAGCATGCTTG+CGG | 0.547734 | 7.2:-80600788 | MS.gene61993:CDS |
AATTGCAAAGAAAGGAATGT+GGG | 0.549323 | 7.2:-80600126 | MS.gene61993:CDS |
AGTAGGGAATTTCACTGTCA+TGG | 0.551399 | 7.2:-80600687 | MS.gene61993:CDS |
GATTATGATGCTAGTGATCA+CGG | 0.551588 | 7.2:-80601113 | MS.gene61993:CDS |
CTCGTGATGTAAACAGGTGT+CGG | 0.552777 | 7.2:+80601943 | None:intergenic |
AACCCACTCTGAACAGGGAT+CGG | 0.561083 | 7.2:+80601473 | None:intergenic |
CTTAAAAGGTCAGTGAGGGT+TGG | 0.563506 | 7.2:-80601323 | MS.gene61993:CDS |
TGAGGAGGTAGCACTACTGT+TGG | 0.564939 | 7.2:+80600498 | None:intergenic |
GCACGTTTGCAAAATGATCA+TGG | 0.565641 | 7.2:+80601261 | None:intergenic |
CCGGTAGGGATCTTCAGCAT+AGG | 0.566325 | 7.2:-80601598 | MS.gene61993:CDS |
GTTGCTGCTGTTCACAGGAT+CGG | 0.566715 | 7.2:-80601074 | MS.gene61993:CDS |
CGTGCCTTTCTCCGACCGGT+AGG | 0.568262 | 7.2:-80601613 | MS.gene61993:CDS |
AAGCATGCTTCACGAATCAT+GGG | 0.570436 | 7.2:+80600792 | None:intergenic |
CCTGTTCAGAGTGGGTTAGG+AGG | 0.570479 | 7.2:-80601467 | MS.gene61993:CDS |
ACCTTCACGAGAGAAGTAGA+AGG | 0.573149 | 7.2:+80601239 | None:intergenic |
AACCGGGTGTGTTCTAGGCA+TGG | 0.574766 | 7.2:-80601819 | MS.gene61993:CDS |
AGAACTCGGGTGTGAAGCAA+AGG | 0.577368 | 7.2:-80600299 | MS.gene61993:CDS |
AGACAAAGACCATGATCGAT+AGG | 0.582042 | 7.2:+80600951 | None:intergenic |
GGGAGAAGTCTGCAGAACTC+GGG | 0.582949 | 7.2:-80600312 | MS.gene61993:CDS |
GGATTGAAGCCTGAGGCCAA+TGG | 0.584252 | 7.2:+80600892 | None:intergenic |
AAAGGAGTGGATCATTAGTA+GGG | 0.584462 | 7.2:-80600281 | MS.gene61993:CDS |
TGATGCATATACCAACTCCA+TGG | 0.585571 | 7.2:-80600394 | MS.gene61993:CDS |
CAGATATGGATGAAGAGAAG+TGG | 0.586584 | 7.2:-80600197 | MS.gene61993:CDS |
GTGCCTTTCTCCGACCGGTA+GGG | 0.588391 | 7.2:-80601612 | MS.gene61993:CDS |
GGTAAAGCTCTTGGACAACC+AGG | 0.588444 | 7.2:-80601347 | MS.gene61993:CDS |
TGGCGGCTGCAACTTTCAAA+GGG | 0.592809 | 7.2:-80601919 | MS.gene61993:CDS |
TTCCATGCCTAGAACACACC+CGG | 0.595102 | 7.2:+80601817 | None:intergenic |
CTCCTAACCCACTCTGAACA+GGG | 0.595459 | 7.2:+80601468 | None:intergenic |
TTATTCCCGAAACATTCACT+AGG | 0.595843 | 7.2:+80601893 | None:intergenic |
ACTCAAGCTTTCTAAACTAG+AGG | 0.598019 | 7.2:-80600448 | MS.gene61993:CDS |
AAGAGGCAGAGACAAAGACT+TGG | 0.603488 | 7.2:-80600102 | MS.gene61993:CDS |
AATCGGCGATATGATGAGTA+GGG | 0.603957 | 7.2:-80600703 | MS.gene61993:CDS |
TTAAACACAGACAGACATGC+AGG | 0.606846 | 7.2:-80601032 | MS.gene61993:CDS |
AACCGATCCCTGTTCAGAGT+GGG | 0.611380 | 7.2:-80601475 | MS.gene61993:CDS |
TAATTGCAAAGAAAGGAATG+TGG | 0.611385 | 7.2:-80600127 | MS.gene61993:CDS |
GCTTGAGCTAATATGTATTG+AGG | 0.613943 | 7.2:-80600649 | MS.gene61993:CDS |
TGCTGAAGATCCCTACCGGT+CGG | 0.614630 | 7.2:+80601602 | None:intergenic |
GATGCATATACCAACTCCAT+GGG | 0.621209 | 7.2:-80600393 | MS.gene61993:CDS |
ACAATGCACATACTGTGAAG+AGG | 0.621359 | 7.2:-80601781 | MS.gene61993:CDS |
CCTATGCTGAAGATCCCTAC+CGG | 0.624458 | 7.2:+80601598 | None:intergenic |
ACACCGTGCCTTTCTCCGAC+CGG | 0.634672 | 7.2:-80601617 | MS.gene61993:CDS |
GAACCGATCCCTGTTCAGAG+TGG | 0.634745 | 7.2:-80601476 | MS.gene61993:CDS |
TCGGGTGTGAAGCAAAGGAG+TGG | 0.637852 | 7.2:-80600294 | MS.gene61993:CDS |
CACCTGTTTACATCACGAGA+TGG | 0.641358 | 7.2:-80601939 | MS.gene61993:CDS |
TTCTGCTAGACAAAGACCAA+AGG | 0.644167 | 7.2:+80600725 | None:intergenic |
TATGCACCAAACAATCCGAA+AGG | 0.652899 | 7.2:-80601377 | MS.gene61993:CDS |
AATACACGTCTTCTACCAGA+AGG | 0.655694 | 7.2:+80601854 | None:intergenic |
CTGTTTACATCACGAGATGG+CGG | 0.661025 | 7.2:-80601936 | MS.gene61993:CDS |
CTACCGGTCGGAGAAAGGCA+CGG | 0.664308 | 7.2:+80601614 | None:intergenic |
AGGACTTAAAAGGTCAGTGA+GGG | 0.665609 | 7.2:-80601327 | MS.gene61993:CDS |
AGCATTCAATGTCCCAACTG+AGG | 0.669727 | 7.2:-80601747 | MS.gene61993:CDS |
CAGGACTTAAAAGGTCAGTG+AGG | 0.673465 | 7.2:-80601328 | MS.gene61993:CDS |
TCACTAGCATCATAATCATG+AGG | 0.682179 | 7.2:+80601119 | None:intergenic |
ACTGGTTAAGGATATTGTCG+TGG | 0.683096 | 7.2:-80601516 | MS.gene61993:CDS |
TATTTGTACAGACTGAAACC+GGG | 0.684002 | 7.2:-80601835 | MS.gene61993:CDS |
GTGAAAGGGATTGAAGCCTG+AGG | 0.705654 | 7.2:+80600885 | None:intergenic |
TATTGTGAAACCAACTGACG+AGG | 0.708861 | 7.2:-80601405 | MS.gene61993:CDS |
ATTGTCGTGGCAATAAAAGG+CGG | 0.723987 | 7.2:-80601503 | MS.gene61993:CDS |
CTTCAGCATAGGGATCAGAG+TGG | 0.738242 | 7.2:-80601587 | MS.gene61993:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTCAATGTTAATGATA+GGG | - | chr7.2:80600832-80600851 | MS.gene61993:CDS | 15.0% |
!! | TTAAAAAATTCTCAAGAAAC+TGG | + | chr7.2:80601870-80601889 | None:intergenic | 20.0% |
!!! | AGTTTCTTGAGAATTTTTTA+AGG | - | chr7.2:80601869-80601888 | MS.gene61993:CDS | 20.0% |
!!! | ATTATTTTAGAAACTGCTAT+GGG | - | chr7.2:80600600-80600619 | MS.gene61993:CDS | 20.0% |
!!! | CTATTTTCAATGTTAATGAT+AGG | - | chr7.2:80600831-80600850 | MS.gene61993:CDS | 20.0% |
!!! | TATTATTTTAGAAACTGCTA+TGG | - | chr7.2:80600599-80600618 | MS.gene61993:CDS | 20.0% |
!!! | TGAGAATTTTTTAAGGTTAT+TGG | - | chr7.2:80601876-80601895 | MS.gene61993:CDS | 20.0% |
!! | CTTTTGTTAATTGCAAAGAA+AGG | - | chr7.2:80601905-80601924 | MS.gene61993:CDS | 25.0% |
!! | TTTAGTTCCAGATAACAAAT+CGG | + | chr7.2:80600501-80600520 | None:intergenic | 25.0% |
!!! | TTATTTTAGAAACTGCTATG+GGG | - | chr7.2:80600601-80600620 | MS.gene61993:CDS | 25.0% |
AATGTTAATGATAGGGTCAA+TGG | - | chr7.2:80600839-80600858 | MS.gene61993:CDS | 30.0% | |
AATTGCAAAGAAAGGAATGT+GGG | - | chr7.2:80601913-80601932 | MS.gene61993:CDS | 30.0% | |
ATGTTTCGGGAATAAGAAAA+TGG | - | chr7.2:80600154-80600173 | MS.gene61993:CDS | 30.0% | |
CAATGGATCCATTCAAAATA+AGG | + | chr7.2:80601133-80601152 | None:intergenic | 30.0% | |
CCTCAATTCAAAACGAAAAA+CGG | - | chr7.2:80601559-80601578 | MS.gene61993:CDS | 30.0% | |
CTTGAAAAATGATCTAAGTG+TGG | - | chr7.2:80600343-80600362 | MS.gene61993:CDS | 30.0% | |
CTTTGCAATTAACAAAAGCT+GGG | + | chr7.2:80601903-80601922 | None:intergenic | 30.0% | |
TAATTGCAAAGAAAGGAATG+TGG | - | chr7.2:80601912-80601931 | MS.gene61993:CDS | 30.0% | |
TCTTTGCAATTAACAAAAGC+TGG | + | chr7.2:80601904-80601923 | None:intergenic | 30.0% | |
TCTTTGTCTACCTGAAAATT+TGG | - | chr7.2:80601102-80601121 | MS.gene61993:CDS | 30.0% | |
TGATTCAGAAATGCTTAGAA+TGG | - | chr7.2:80601219-80601238 | MS.gene61993:CDS | 30.0% | |
TTGCTTATTTGCTTCTTGTT+TGG | + | chr7.2:80600875-80600894 | None:intergenic | 30.0% | |
! | TAAGGATCTTCCAAATTTTC+AGG | + | chr7.2:80601115-80601134 | None:intergenic | 30.0% |
! | TTTTGTGAAGCTAACAGATA+TGG | - | chr7.2:80601828-80601847 | MS.gene61993:CDS | 30.0% |
!! | TCAGATAGCTTTGAAATATC+AGG | + | chr7.2:80601682-80601701 | None:intergenic | 30.0% |
!! | TTTTTCGTTTTGAATTGAGG+AGG | + | chr7.2:80601559-80601578 | None:intergenic | 30.0% |
!!! | CTTATTTTGAATGGATCCAT+TGG | - | chr7.2:80601131-80601150 | MS.gene61993:CDS | 30.0% |
!!! | TGGAAGATCCTTATTTTGAA+TGG | - | chr7.2:80601122-80601141 | MS.gene61993:CDS | 30.0% |
AAAATGGAAAGAAAGCCTTC+TGG | - | chr7.2:80600170-80600189 | MS.gene61993:CDS | 35.0% | |
AAAGGAGTGGATCATTAGTA+GGG | - | chr7.2:80601758-80601777 | MS.gene61993:CDS | 35.0% | |
ACAAAACCTTTCGGATTGTT+TGG | + | chr7.2:80600671-80600690 | None:intergenic | 35.0% | |
ACTCAAGCTTTCTAAACTAG+AGG | - | chr7.2:80601591-80601610 | MS.gene61993:CDS | 35.0% | |
AGCATTTCTGAATCACGAAA+CGG | + | chr7.2:80601214-80601233 | None:intergenic | 35.0% | |
ATAAGTGAACTTTCCTCAGT+TGG | + | chr7.2:80600308-80600327 | None:intergenic | 35.0% | |
CAAAATGATCATGGTCAAGA+AGG | + | chr7.2:80600772-80600791 | None:intergenic | 35.0% | |
CTCGCAATCTAACTGAAAAA+TGG | + | chr7.2:80601479-80601498 | None:intergenic | 35.0% | |
GAGCAACCAATAATCTCAAT+CGG | + | chr7.2:80600479-80600498 | None:intergenic | 35.0% | |
GAGGAAAGTTCACTTATTTG+CGG | - | chr7.2:80600311-80600330 | MS.gene61993:CDS | 35.0% | |
GATATTGTCGTGGCAATAAA+AGG | - | chr7.2:80600533-80600552 | MS.gene61993:CDS | 35.0% | |
GATTATGATGCTAGTGATCA+CGG | - | chr7.2:80600926-80600945 | MS.gene61993:CDS | 35.0% | |
GCTTGAGCTAATATGTATTG+AGG | - | chr7.2:80601390-80601409 | MS.gene61993:CDS | 35.0% | |
GCTTTACCAACAAAACCTTT+CGG | + | chr7.2:80600680-80600699 | None:intergenic | 35.0% | |
GTATTTGTACAGACTGAAAC+CGG | - | chr7.2:80600203-80600222 | MS.gene61993:CDS | 35.0% | |
TAAGTGAACTTTCCTCAGTT+GGG | + | chr7.2:80600307-80600326 | None:intergenic | 35.0% | |
TACTGTGAAGAGGAAATTAC+AGG | - | chr7.2:80600268-80600287 | MS.gene61993:CDS | 35.0% | |
TAGTTTAGAAAGCTTGAGTC+TGG | + | chr7.2:80601590-80601609 | None:intergenic | 35.0% | |
TATTTGTACAGACTGAAACC+GGG | - | chr7.2:80600204-80600223 | MS.gene61993:CDS | 35.0% | |
TCACTAGCATCATAATCATG+AGG | + | chr7.2:80600923-80600942 | None:intergenic | 35.0% | |
TGAAAAACACAACGATCGAT+GGG | - | chr7.2:80601707-80601726 | MS.gene61993:CDS | 35.0% | |
TGGAACTAAACAACTGGTTA+AGG | - | chr7.2:80600511-80600530 | MS.gene61993:CDS | 35.0% | |
TTATTCCCGAAACATTCACT+AGG | + | chr7.2:80600149-80600168 | None:intergenic | 35.0% | |
! | GTTATCTGGAACTAAACAAC+TGG | - | chr7.2:80600505-80600524 | MS.gene61993:CDS | 35.0% |
!! | AACAATCCGAAAGGTTTTGT+TGG | - | chr7.2:80600671-80600690 | MS.gene61993:CDS | 35.0% |
!! | CCGTTTTTCGTTTTGAATTG+AGG | + | chr7.2:80601562-80601581 | None:intergenic | 35.0% |
!! | TTCTCTTCTGAGACGAAATT+TGG | - | chr7.2:80601439-80601458 | MS.gene61993:CDS | 35.0% |
AAATCGGCGATATGATGAGT+AGG | - | chr7.2:80601335-80601354 | MS.gene61993:CDS | 40.0% | |
AAGAAAGGAATGTGGGAAAG+AGG | - | chr7.2:80601920-80601939 | MS.gene61993:CDS | 40.0% | |
AAGCATGCTTCACGAATCAT+GGG | + | chr7.2:80601250-80601269 | None:intergenic | 40.0% | |
AATACACGTCTTCTACCAGA+AGG | + | chr7.2:80600188-80600207 | None:intergenic | 40.0% | |
AATCGGCGATATGATGAGTA+GGG | - | chr7.2:80601336-80601355 | MS.gene61993:CDS | 40.0% | |
ACAATGCACATACTGTGAAG+AGG | - | chr7.2:80600258-80600277 | MS.gene61993:CDS | 40.0% | |
ACATATTAGCTCAAGCTCAC+TGG | + | chr7.2:80601386-80601405 | None:intergenic | 40.0% | |
ACTGGTTAAGGATATTGTCG+TGG | - | chr7.2:80600523-80600542 | MS.gene61993:CDS | 40.0% | |
AGACAAAGACCATGATCGAT+AGG | + | chr7.2:80601091-80601110 | None:intergenic | 40.0% | |
AGGACTTAAAAGGTCAGTGA+GGG | - | chr7.2:80600712-80600731 | MS.gene61993:CDS | 40.0% | |
AGTAGGGAATTTCACTGTCA+TGG | - | chr7.2:80601352-80601371 | MS.gene61993:CDS | 40.0% | |
AGTGGACCGATTGAGATTAT+TGG | - | chr7.2:80600470-80600489 | MS.gene61993:CDS | 40.0% | |
ATGCAGGAAATCTTCTTGTC+AGG | - | chr7.2:80601023-80601042 | MS.gene61993:CDS | 40.0% | |
ATTGTCGTGGCAATAAAAGG+CGG | - | chr7.2:80600536-80600555 | MS.gene61993:CDS | 40.0% | |
CAAAGGAGTGGATCATTAGT+AGG | - | chr7.2:80601757-80601776 | MS.gene61993:CDS | 40.0% | |
CAGATATGGATGAAGAGAAG+TGG | - | chr7.2:80601842-80601861 | MS.gene61993:CDS | 40.0% | |
CATATTAGCTCAAGCTCACT+GGG | + | chr7.2:80601385-80601404 | None:intergenic | 40.0% | |
GATGCATATACCAACTCCAT+GGG | - | chr7.2:80601646-80601665 | MS.gene61993:CDS | 40.0% | |
GCACGTTTGCAAAATGATCA+TGG | + | chr7.2:80600781-80600800 | None:intergenic | 40.0% | |
GCATTTCTGAATCACGAAAC+GGG | + | chr7.2:80601213-80601232 | None:intergenic | 40.0% | |
GGTCTTTGTCTAGCAGAAAT+CGG | - | chr7.2:80601319-80601338 | MS.gene61993:CDS | 40.0% | |
GTGAAAAACACAACGATCGA+TGG | - | chr7.2:80601706-80601725 | MS.gene61993:CDS | 40.0% | |
TACCAACTCCATGGGAAAAT+TGG | - | chr7.2:80601654-80601673 | MS.gene61993:CDS | 40.0% | |
TATGCACCAAACAATCCGAA+AGG | - | chr7.2:80600662-80600681 | MS.gene61993:CDS | 40.0% | |
TATTGTGAAACCAACTGACG+AGG | - | chr7.2:80600634-80600653 | MS.gene61993:CDS | 40.0% | |
TCATTAGTAGGGACATCATC+TGG | - | chr7.2:80601769-80601788 | MS.gene61993:CDS | 40.0% | |
TGAGTTCATCGTCAGTGAAA+GGG | + | chr7.2:80601171-80601190 | None:intergenic | 40.0% | |
TGATGCATATACCAACTCCA+TGG | - | chr7.2:80601645-80601664 | MS.gene61993:CDS | 40.0% | |
TTAAACACAGACAGACATGC+AGG | - | chr7.2:80601007-80601026 | MS.gene61993:CDS | 40.0% | |
TTCTGCTAGACAAAGACCAA+AGG | + | chr7.2:80601317-80601336 | None:intergenic | 40.0% | |
TTCTTGTCAGGAAGCTTGAT+GGG | - | chr7.2:80601035-80601054 | MS.gene61993:CDS | 40.0% | |
TTGAGTTCATCGTCAGTGAA+AGG | + | chr7.2:80601172-80601191 | None:intergenic | 40.0% | |
TTGGACAACCAGGACTTAAA+AGG | - | chr7.2:80600702-80600721 | MS.gene61993:CDS | 40.0% | |
! | ACTAGAGGAAAGTGTGATAG+AGG | - | chr7.2:80601606-80601625 | MS.gene61993:CDS | 40.0% |
!! | GAGCTTTTTCCTATCGATCA+TGG | - | chr7.2:80601079-80601098 | MS.gene61993:CDS | 40.0% |
!! | TTCGGATTGTTTGGTGCATA+AGG | + | chr7.2:80600662-80600681 | None:intergenic | 40.0% |
!!! | GGTTTTGTTGGTAAAGCTCT+TGG | - | chr7.2:80600683-80600702 | MS.gene61993:CDS | 40.0% |
AAGAGGCAGAGACAAAGACT+TGG | - | chr7.2:80601937-80601956 | MS.gene61993:CDS | 45.0% | |
AAGTTCCTGGTGAGAAGAAG+TGG | + | chr7.2:80600383-80600402 | None:intergenic | 45.0% | |
ACCTTCACGAGAGAAGTAGA+AGG | + | chr7.2:80600803-80600822 | None:intergenic | 45.0% | |
AGCATTCAATGTCCCAACTG+AGG | - | chr7.2:80600292-80600311 | MS.gene61993:CDS | 45.0% | |
ATTCTCCACTTCTTCTCACC+AGG | - | chr7.2:80600375-80600394 | MS.gene61993:CDS | 45.0% | |
CAAGCATGCTTCACGAATCA+TGG | + | chr7.2:80601251-80601270 | None:intergenic | 45.0% | |
CACCTGTTTACATCACGAGA+TGG | - | chr7.2:80600100-80600119 | MS.gene61993:CDS | 45.0% | |
CAGGACTTAAAAGGTCAGTG+AGG | - | chr7.2:80600711-80600730 | MS.gene61993:CDS | 45.0% | |
CTCGTGATGTAAACAGGTGT+CGG | + | chr7.2:80600099-80600118 | None:intergenic | 45.0% | |
CTGTTTACATCACGAGATGG+CGG | - | chr7.2:80600103-80600122 | MS.gene61993:CDS | 45.0% | |
CTTAAAAGGTCAGTGAGGGT+TGG | - | chr7.2:80600716-80600735 | MS.gene61993:CDS | 45.0% | |
CTTCTTGTCAGGAAGCTTGA+TGG | - | chr7.2:80601034-80601053 | MS.gene61993:CDS | 45.0% | |
GGCATCCTAGTGAATGTTTC+GGG | - | chr7.2:80600141-80600160 | MS.gene61993:CDS | 45.0% | |
GGGCATCCTAGTGAATGTTT+CGG | - | chr7.2:80600140-80600159 | MS.gene61993:CDS | 45.0% | |
TGATTCGTGAAGCATGCTTG+CGG | - | chr7.2:80601251-80601270 | MS.gene61993:CDS | 45.0% | |
TTCACTTATTTGCGGCGACA+CGG | - | chr7.2:80600319-80600338 | MS.gene61993:CDS | 45.0% | |
! | AGAGGAAAGTGTGATAGAGG+AGG | - | chr7.2:80601609-80601628 | MS.gene61993:CDS | 45.0% |
! | ATCAGGCACCAATTTTCCCA+TGG | + | chr7.2:80601665-80601684 | None:intergenic | 45.0% |
! | CACCAATTTTCCCATGGAGT+TGG | + | chr7.2:80601659-80601678 | None:intergenic | 45.0% |
! | GAAAGTGTGATAGAGGAGGA+GGG | - | chr7.2:80601613-80601632 | MS.gene61993:CDS | 45.0% |
!! | CTCACTGACCTTTTAAGTCC+TGG | + | chr7.2:80600713-80600732 | None:intergenic | 45.0% |
!! | GGTTGCTCCGATTTGTTATC+TGG | - | chr7.2:80600491-80600510 | MS.gene61993:CDS | 45.0% |
!! | TGTAAACAGGTGTCGGAATC+AGG | + | chr7.2:80600092-80600111 | None:intergenic | 45.0% |
AACCCACTCTGAACAGGGAT+CGG | + | chr7.2:80600569-80600588 | None:intergenic | 50.0% | |
AACCGATCCCTGTTCAGAGT+GGG | - | chr7.2:80600564-80600583 | MS.gene61993:CDS | 50.0% | |
ACTCCTGTGCAGAAAGTTCC+TGG | + | chr7.2:80600396-80600415 | None:intergenic | 50.0% | |
ACTGAAACCGGGTGTGTTCT+AGG | - | chr7.2:80600215-80600234 | MS.gene61993:CDS | 50.0% | |
AGAACTCGGGTGTGAAGCAA+AGG | - | chr7.2:80601740-80601759 | MS.gene61993:CDS | 50.0% | |
ATGGCGGCTGCAACTTTCAA+AGG | - | chr7.2:80600119-80600138 | MS.gene61993:CDS | 50.0% | |
CCTATGCTGAAGATCCCTAC+CGG | + | chr7.2:80600444-80600463 | None:intergenic | 50.0% | |
CGCCATCTCGTGATGTAAAC+AGG | + | chr7.2:80600105-80600124 | None:intergenic | 50.0% | |
CGGTAGGGATCTTCAGCATA+GGG | - | chr7.2:80600442-80600461 | MS.gene61993:CDS | 50.0% | |
CTCAAAGAAGCAGCAGCCTT+TGG | - | chr7.2:80601298-80601317 | MS.gene61993:CDS | 50.0% | |
CTCCTAACCCACTCTGAACA+GGG | + | chr7.2:80600574-80600593 | None:intergenic | 50.0% | |
CTTCAGCATAGGGATCAGAG+TGG | - | chr7.2:80600452-80600471 | MS.gene61993:CDS | 50.0% | |
GATTCGTGAAGCATGCTTGC+GGG | - | chr7.2:80601252-80601271 | MS.gene61993:CDS | 50.0% | |
GCATAAGGTTCCTCGTCAGT+TGG | + | chr7.2:80600647-80600666 | None:intergenic | 50.0% | |
GCCTTCTACTTCTCTCGTGA+AGG | - | chr7.2:80600799-80600818 | MS.gene61993:CDS | 50.0% | |
GGTAAAGCTCTTGGACAACC+AGG | - | chr7.2:80600692-80600711 | MS.gene61993:CDS | 50.0% | |
GTGAAAGGGATTGAAGCCTG+AGG | + | chr7.2:80601157-80601176 | None:intergenic | 50.0% | |
GTTGCTGCTGTTCACAGGAT+CGG | - | chr7.2:80600965-80600984 | MS.gene61993:CDS | 50.0% | |
TCACCAGGAACTTTCTGCAC+AGG | - | chr7.2:80600390-80600409 | MS.gene61993:CDS | 50.0% | |
TCACTGTTGCTGCTGTTCAC+AGG | - | chr7.2:80600960-80600979 | MS.gene61993:CDS | 50.0% | |
TGAGGAGGTAGCACTACTGT+TGG | + | chr7.2:80601544-80601563 | None:intergenic | 50.0% | |
TGGCGGCTGCAACTTTCAAA+GGG | - | chr7.2:80600120-80600139 | MS.gene61993:CDS | 50.0% | |
TGGGAGAAGTCTGCAGAACT+CGG | - | chr7.2:80601726-80601745 | MS.gene61993:CDS | 50.0% | |
TGGGCTTGGAAGGTTTGATC+AGG | - | chr7.2:80601054-80601073 | MS.gene61993:CDS | 50.0% | |
TTCCATGCCTAGAACACACC+CGG | + | chr7.2:80600225-80600244 | None:intergenic | 50.0% | |
! | ATCCCTGTTCAGAGTGGGTT+AGG | - | chr7.2:80600569-80600588 | MS.gene61993:CDS | 50.0% |
! | CAAAGGCTGCTGCTTCTTTG+AGG | + | chr7.2:80601300-80601319 | None:intergenic | 50.0% |
! | GGAAAGTGTGATAGAGGAGG+AGG | - | chr7.2:80601612-80601631 | MS.gene61993:CDS | 50.0% |
! | TGAAGCATGCTTGCGGGTTT+TGG | - | chr7.2:80601258-80601277 | MS.gene61993:CDS | 50.0% |
! | TGAATGGATCCATTGGCCTC+AGG | - | chr7.2:80601138-80601157 | MS.gene61993:CDS | 50.0% |
CCGGTAGGGATCTTCAGCAT+AGG | - | chr7.2:80600441-80600460 | MS.gene61993:CDS | 55.0% | |
CCTCCTAACCCACTCTGAAC+AGG | + | chr7.2:80600575-80600594 | None:intergenic | 55.0% | |
GAACCGATCCCTGTTCAGAG+TGG | - | chr7.2:80600563-80600582 | MS.gene61993:CDS | 55.0% | |
GGATTGAAGCCTGAGGCCAA+TGG | + | chr7.2:80601150-80601169 | None:intergenic | 55.0% | |
GGGAGAAGTCTGCAGAACTC+GGG | - | chr7.2:80601727-80601746 | MS.gene61993:CDS | 55.0% | |
GTCAGTGAGGGTTGGAGAGA+CGG | - | chr7.2:80600724-80600743 | MS.gene61993:CDS | 55.0% | |
TCAGTGAGGGTTGGAGAGAC+GGG | - | chr7.2:80600725-80600744 | MS.gene61993:CDS | 55.0% | |
TCGGGTGTGAAGCAAAGGAG+TGG | - | chr7.2:80601745-80601764 | MS.gene61993:CDS | 55.0% | |
TGCTGAAGATCCCTACCGGT+CGG | + | chr7.2:80600440-80600459 | None:intergenic | 55.0% | |
! | AACCGGGTGTGTTCTAGGCA+TGG | - | chr7.2:80600220-80600239 | MS.gene61993:CDS | 55.0% |
!! | CCTGTTCAGAGTGGGTTAGG+AGG | - | chr7.2:80600572-80600591 | MS.gene61993:CDS | 55.0% |
!! | GGAAGCTTGATGGGCTTGGA+AGG | - | chr7.2:80601044-80601063 | MS.gene61993:CDS | 55.0% |
!! | GTCAGGAAGCTTGATGGGCT+TGG | - | chr7.2:80601040-80601059 | MS.gene61993:CDS | 55.0% |
ACACCGTGCCTTTCTCCGAC+CGG | - | chr7.2:80600422-80600441 | MS.gene61993:CDS | 60.0% | |
CTACCGGTCGGAGAAAGGCA+CGG | + | chr7.2:80600428-80600447 | None:intergenic | 60.0% | |
GATCCCTACCGGTCGGAGAA+AGG | + | chr7.2:80600433-80600452 | None:intergenic | 60.0% | |
GTGCCTTTCTCCGACCGGTA+GGG | - | chr7.2:80600427-80600446 | MS.gene61993:CDS | 60.0% | |
CGTGCCTTTCTCCGACCGGT+AGG | - | chr7.2:80600426-80600445 | MS.gene61993:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 80600083 | 80601978 | 80600083 | ID=MS.gene61993 |
chr7.2 | mRNA | 80600083 | 80601978 | 80600083 | ID=MS.gene61993.t1;Parent=MS.gene61993 |
chr7.2 | exon | 80600083 | 80601978 | 80600083 | ID=MS.gene61993.t1.exon1;Parent=MS.gene61993.t1 |
chr7.2 | CDS | 80600083 | 80601978 | 80600083 | ID=cds.MS.gene61993.t1;Parent=MS.gene61993.t1 |
Gene Sequence |
Protein sequence |