AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61993


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61993.t1 MTR_7g017360 95.095 632 30 1 1 631 1 632 0.0 1223
MS.gene61993.t1 MTR_0009s0120 66.446 605 192 6 35 631 39 640 0.0 779
MS.gene61993.t1 MTR_8g066090 62.751 647 218 11 1 631 1 640 0.0 758
MS.gene61993.t1 MTR_8g099565 39.799 299 143 8 148 426 267 548 3.31e-58 206
MS.gene61993.t1 MTR_5g009120 39.542 306 159 7 155 446 261 554 4.05e-58 206
MS.gene61993.t1 MTR_8g027610 38.284 303 154 8 140 426 262 547 2.61e-55 198
MS.gene61993.t1 MTR_3g091400 39.535 301 145 9 147 426 250 534 2.28e-54 195
MS.gene61993.t1 MTR_7g117395 37.299 311 162 8 132 426 254 547 1.31e-53 193
MS.gene61993.t1 MTR_7g105910 89.796 49 5 0 547 595 2 50 1.22e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61993.t1 AT2G03890 61.295 664 210 12 1 631 1 650 0.0 749
MS.gene61993.t1 AT1G13640 61.406 640 208 12 13 631 1 622 0.0 734
MS.gene61993.t1 AT1G13640 61.406 640 208 12 13 631 1 622 0.0 734
MS.gene61993.t1 AT1G26270 61.346 639 220 11 6 631 6 630 0.0 725
MS.gene61993.t1 AT2G03890 57.014 442 158 9 212 631 99 530 6.45e-153 451
MS.gene61993.t1 AT2G03890 56.731 104 30 3 1 93 1 100 2.04e-22 101
MS.gene61993.t1 AT3G56600 42.402 533 245 14 109 631 53 533 3.19e-122 373
MS.gene61993.t1 AT3G56600 42.402 533 245 14 109 631 56 536 3.89e-122 373
MS.gene61993.t1 AT3G56600 42.402 533 245 14 109 631 56 536 3.89e-122 373
MS.gene61993.t1 AT2G40850 40.441 544 255 12 108 631 67 561 9.06e-118 362
MS.gene61993.t1 AT5G24240 41.611 298 144 7 146 426 244 528 4.04e-60 211
MS.gene61993.t1 AT5G24240 41.611 298 144 7 146 426 244 528 4.04e-60 211
MS.gene61993.t1 AT2G46500 34.272 426 218 15 43 426 115 520 9.56e-57 201
MS.gene61993.t1 AT2G46500 34.272 426 218 15 43 426 115 520 9.56e-57 201
MS.gene61993.t1 AT2G46500 30.769 299 149 13 43 299 115 397 3.40e-21 97.1

Find 138 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTCTGAGACGAAATT+TGG 0.171514 7.2:-80600600 MS.gene61993:CDS
TCTTTGTCTACCTGAAAATT+TGG 0.227445 7.2:-80600937 MS.gene61993:CDS
TGAAGCATGCTTGCGGGTTT+TGG 0.247060 7.2:-80600781 MS.gene61993:CDS
GGTTGCTCCGATTTGTTATC+TGG 0.247484 7.2:-80601548 MS.gene61993:CDS
TTGCTTATTTGCTTCTTGTT+TGG 0.259209 7.2:+80601167 None:intergenic
TACCAACTCCATGGGAAAAT+TGG 0.273301 7.2:-80600385 MS.gene61993:CDS
AGTGGACCGATTGAGATTAT+TGG 0.279156 7.2:-80601569 MS.gene61993:CDS
GATATTGTCGTGGCAATAAA+AGG 0.290087 7.2:-80601506 MS.gene61993:CDS
ACTGAAACCGGGTGTGTTCT+AGG 0.312214 7.2:-80601824 MS.gene61993:CDS
GGCATCCTAGTGAATGTTTC+GGG 0.314256 7.2:-80601898 MS.gene61993:CDS
CAATGGATCCATTCAAAATA+AGG 0.315349 7.2:+80600909 None:intergenic
ACAAAACCTTTCGGATTGTT+TGG 0.356159 7.2:+80601371 None:intergenic
TTGGACAACCAGGACTTAAA+AGG 0.364302 7.2:-80601337 MS.gene61993:CDS
TCAGATAGCTTTGAAATATC+AGG 0.369247 7.2:+80600360 None:intergenic
TGTAAACAGGTGTCGGAATC+AGG 0.370248 7.2:+80601950 None:intergenic
GTCAGGAAGCTTGATGGGCT+TGG 0.371317 7.2:-80600999 MS.gene61993:CDS
ATTTATAATACCTCTAAAAC+TGG 0.373454 7.2:+80600070 None:intergenic
CGCCATCTCGTGATGTAAAC+AGG 0.373918 7.2:+80601937 None:intergenic
CTCAAAGAAGCAGCAGCCTT+TGG 0.375023 7.2:-80600741 MS.gene61993:CDS
TCTTTGCAATTAACAAAAGC+TGG 0.375606 7.2:+80600138 None:intergenic
CCTCCTAACCCACTCTGAAC+AGG 0.376495 7.2:+80601467 None:intergenic
GATTCGTGAAGCATGCTTGC+GGG 0.378122 7.2:-80600787 MS.gene61993:CDS
ATGTTTCGGGAATAAGAAAA+TGG 0.386482 7.2:-80601885 MS.gene61993:CDS
CAAGCATGCTTCACGAATCA+TGG 0.394121 7.2:+80600791 None:intergenic
TTCGGATTGTTTGGTGCATA+AGG 0.397864 7.2:+80601380 None:intergenic
CAAAGGAGTGGATCATTAGT+AGG 0.398287 7.2:-80600282 MS.gene61993:CDS
GTATTTGTACAGACTGAAAC+CGG 0.404184 7.2:-80601836 MS.gene61993:CDS
GGGCATCCTAGTGAATGTTT+CGG 0.408416 7.2:-80601899 MS.gene61993:CDS
AATGTTAATGATAGGGTCAA+TGG 0.409025 7.2:-80601200 MS.gene61993:CDS
GTTATCTGGAACTAAACAAC+TGG 0.409758 7.2:-80601534 MS.gene61993:CDS
TAGTTTAGAAAGCTTGAGTC+TGG 0.411438 7.2:+80600452 None:intergenic
GGAAAGTGTGATAGAGGAGG+AGG 0.411807 7.2:-80600427 MS.gene61993:CDS
CTTCTTGTCAGGAAGCTTGA+TGG 0.414805 7.2:-80601005 MS.gene61993:CDS
ACTCCTGTGCAGAAAGTTCC+TGG 0.417901 7.2:+80601646 None:intergenic
GGTCTTTGTCTAGCAGAAAT+CGG 0.425556 7.2:-80600720 MS.gene61993:CDS
TGGAACTAAACAACTGGTTA+AGG 0.430652 7.2:-80601528 MS.gene61993:CDS
CAAAGGCTGCTGCTTCTTTG+AGG 0.431918 7.2:+80600742 None:intergenic
ACATATTAGCTCAAGCTCAC+TGG 0.437474 7.2:+80600656 None:intergenic
ACTAGAGGAAAGTGTGATAG+AGG 0.444353 7.2:-80600433 MS.gene61993:CDS
TACTGTGAAGAGGAAATTAC+AGG 0.448807 7.2:-80601771 MS.gene61993:CDS
TCATTAGTAGGGACATCATC+TGG 0.450706 7.2:-80600270 MS.gene61993:CDS
TCACTGTTGCTGCTGTTCAC+AGG 0.458871 7.2:-80601079 MS.gene61993:CDS
TTCTTGTCAGGAAGCTTGAT+GGG 0.460085 7.2:-80601004 MS.gene61993:CDS
ATCCCTGTTCAGAGTGGGTT+AGG 0.467828 7.2:-80601470 MS.gene61993:CDS
TGATTCAGAAATGCTTAGAA+TGG 0.468632 7.2:-80600820 MS.gene61993:CDS
CTTTGCAATTAACAAAAGCT+GGG 0.469980 7.2:+80600139 None:intergenic
ATGCAGGAAATCTTCTTGTC+AGG 0.471861 7.2:-80601016 MS.gene61993:CDS
GAGGAAAGTTCACTTATTTG+CGG 0.473727 7.2:-80601728 MS.gene61993:CDS
GCTTTACCAACAAAACCTTT+CGG 0.473888 7.2:+80601362 None:intergenic
TGAATGGATCCATTGGCCTC+AGG 0.478199 7.2:-80600901 MS.gene61993:CDS
TGGGCTTGGAAGGTTTGATC+AGG 0.478402 7.2:-80600985 MS.gene61993:CDS
CATATTAGCTCAAGCTCACT+GGG 0.479364 7.2:+80600657 None:intergenic
TGAGTTCATCGTCAGTGAAA+GGG 0.479565 7.2:+80600871 None:intergenic
ATAAGTGAACTTTCCTCAGT+TGG 0.482652 7.2:+80601734 None:intergenic
TAAGTGAACTTTCCTCAGTT+GGG 0.484582 7.2:+80601735 None:intergenic
TCAGTGAGGGTTGGAGAGAC+GGG 0.487835 7.2:-80601314 MS.gene61993:CDS
TTTAGTTCCAGATAACAAAT+CGG 0.488060 7.2:+80601541 None:intergenic
ATGGCGGCTGCAACTTTCAA+AGG 0.492053 7.2:-80601920 MS.gene61993:CDS
GCATTTCTGAATCACGAAAC+GGG 0.492416 7.2:+80600829 None:intergenic
GTCAGTGAGGGTTGGAGAGA+CGG 0.493512 7.2:-80601315 MS.gene61993:CDS
AAAATGGAAAGAAAGCCTTC+TGG 0.496190 7.2:-80601869 MS.gene61993:CDS
AAGTTCCTGGTGAGAAGAAG+TGG 0.500200 7.2:+80601659 None:intergenic
CAAAATGATCATGGTCAAGA+AGG 0.505620 7.2:+80601270 None:intergenic
GGAAGCTTGATGGGCTTGGA+AGG 0.512026 7.2:-80600995 MS.gene61993:CDS
TTGAGTTCATCGTCAGTGAA+AGG 0.514657 7.2:+80600870 None:intergenic
GATCCCTACCGGTCGGAGAA+AGG 0.516811 7.2:+80601609 None:intergenic
AGCATTTCTGAATCACGAAA+CGG 0.519474 7.2:+80600828 None:intergenic
TTCACTTATTTGCGGCGACA+CGG 0.519893 7.2:-80601720 MS.gene61993:CDS
TGGGAGAAGTCTGCAGAACT+CGG 0.527301 7.2:-80600313 MS.gene61993:CDS
TCACCAGGAACTTTCTGCAC+AGG 0.528141 7.2:-80601649 MS.gene61993:CDS
CGGTAGGGATCTTCAGCATA+GGG 0.528757 7.2:-80601597 MS.gene61993:CDS
ATTCTCCACTTCTTCTCACC+AGG 0.528800 7.2:-80601664 MS.gene61993:CDS
AGAGGAAAGTGTGATAGAGG+AGG 0.529426 7.2:-80600430 MS.gene61993:CDS
GAGCAACCAATAATCTCAAT+CGG 0.540268 7.2:+80601563 None:intergenic
GCATAAGGTTCCTCGTCAGT+TGG 0.541246 7.2:+80601395 None:intergenic
GAAAGTGTGATAGAGGAGGA+GGG 0.541248 7.2:-80600426 MS.gene61993:CDS
GCCTTCTACTTCTCTCGTGA+AGG 0.541846 7.2:-80601240 MS.gene61993:CDS
AAGAAAGGAATGTGGGAAAG+AGG 0.543039 7.2:-80600119 MS.gene61993:CDS
AAATCGGCGATATGATGAGT+AGG 0.546958 7.2:-80600704 MS.gene61993:CDS
TGATTCGTGAAGCATGCTTG+CGG 0.547734 7.2:-80600788 MS.gene61993:CDS
AATTGCAAAGAAAGGAATGT+GGG 0.549323 7.2:-80600126 MS.gene61993:CDS
AGTAGGGAATTTCACTGTCA+TGG 0.551399 7.2:-80600687 MS.gene61993:CDS
GATTATGATGCTAGTGATCA+CGG 0.551588 7.2:-80601113 MS.gene61993:CDS
CTCGTGATGTAAACAGGTGT+CGG 0.552777 7.2:+80601943 None:intergenic
AACCCACTCTGAACAGGGAT+CGG 0.561083 7.2:+80601473 None:intergenic
CTTAAAAGGTCAGTGAGGGT+TGG 0.563506 7.2:-80601323 MS.gene61993:CDS
TGAGGAGGTAGCACTACTGT+TGG 0.564939 7.2:+80600498 None:intergenic
GCACGTTTGCAAAATGATCA+TGG 0.565641 7.2:+80601261 None:intergenic
CCGGTAGGGATCTTCAGCAT+AGG 0.566325 7.2:-80601598 MS.gene61993:CDS
GTTGCTGCTGTTCACAGGAT+CGG 0.566715 7.2:-80601074 MS.gene61993:CDS
CGTGCCTTTCTCCGACCGGT+AGG 0.568262 7.2:-80601613 MS.gene61993:CDS
AAGCATGCTTCACGAATCAT+GGG 0.570436 7.2:+80600792 None:intergenic
CCTGTTCAGAGTGGGTTAGG+AGG 0.570479 7.2:-80601467 MS.gene61993:CDS
ACCTTCACGAGAGAAGTAGA+AGG 0.573149 7.2:+80601239 None:intergenic
AACCGGGTGTGTTCTAGGCA+TGG 0.574766 7.2:-80601819 MS.gene61993:CDS
AGAACTCGGGTGTGAAGCAA+AGG 0.577368 7.2:-80600299 MS.gene61993:CDS
AGACAAAGACCATGATCGAT+AGG 0.582042 7.2:+80600951 None:intergenic
GGGAGAAGTCTGCAGAACTC+GGG 0.582949 7.2:-80600312 MS.gene61993:CDS
GGATTGAAGCCTGAGGCCAA+TGG 0.584252 7.2:+80600892 None:intergenic
AAAGGAGTGGATCATTAGTA+GGG 0.584462 7.2:-80600281 MS.gene61993:CDS
TGATGCATATACCAACTCCA+TGG 0.585571 7.2:-80600394 MS.gene61993:CDS
CAGATATGGATGAAGAGAAG+TGG 0.586584 7.2:-80600197 MS.gene61993:CDS
GTGCCTTTCTCCGACCGGTA+GGG 0.588391 7.2:-80601612 MS.gene61993:CDS
GGTAAAGCTCTTGGACAACC+AGG 0.588444 7.2:-80601347 MS.gene61993:CDS
TGGCGGCTGCAACTTTCAAA+GGG 0.592809 7.2:-80601919 MS.gene61993:CDS
TTCCATGCCTAGAACACACC+CGG 0.595102 7.2:+80601817 None:intergenic
CTCCTAACCCACTCTGAACA+GGG 0.595459 7.2:+80601468 None:intergenic
TTATTCCCGAAACATTCACT+AGG 0.595843 7.2:+80601893 None:intergenic
ACTCAAGCTTTCTAAACTAG+AGG 0.598019 7.2:-80600448 MS.gene61993:CDS
AAGAGGCAGAGACAAAGACT+TGG 0.603488 7.2:-80600102 MS.gene61993:CDS
AATCGGCGATATGATGAGTA+GGG 0.603957 7.2:-80600703 MS.gene61993:CDS
TTAAACACAGACAGACATGC+AGG 0.606846 7.2:-80601032 MS.gene61993:CDS
AACCGATCCCTGTTCAGAGT+GGG 0.611380 7.2:-80601475 MS.gene61993:CDS
TAATTGCAAAGAAAGGAATG+TGG 0.611385 7.2:-80600127 MS.gene61993:CDS
GCTTGAGCTAATATGTATTG+AGG 0.613943 7.2:-80600649 MS.gene61993:CDS
TGCTGAAGATCCCTACCGGT+CGG 0.614630 7.2:+80601602 None:intergenic
GATGCATATACCAACTCCAT+GGG 0.621209 7.2:-80600393 MS.gene61993:CDS
ACAATGCACATACTGTGAAG+AGG 0.621359 7.2:-80601781 MS.gene61993:CDS
CCTATGCTGAAGATCCCTAC+CGG 0.624458 7.2:+80601598 None:intergenic
ACACCGTGCCTTTCTCCGAC+CGG 0.634672 7.2:-80601617 MS.gene61993:CDS
GAACCGATCCCTGTTCAGAG+TGG 0.634745 7.2:-80601476 MS.gene61993:CDS
TCGGGTGTGAAGCAAAGGAG+TGG 0.637852 7.2:-80600294 MS.gene61993:CDS
CACCTGTTTACATCACGAGA+TGG 0.641358 7.2:-80601939 MS.gene61993:CDS
TTCTGCTAGACAAAGACCAA+AGG 0.644167 7.2:+80600725 None:intergenic
TATGCACCAAACAATCCGAA+AGG 0.652899 7.2:-80601377 MS.gene61993:CDS
AATACACGTCTTCTACCAGA+AGG 0.655694 7.2:+80601854 None:intergenic
CTGTTTACATCACGAGATGG+CGG 0.661025 7.2:-80601936 MS.gene61993:CDS
CTACCGGTCGGAGAAAGGCA+CGG 0.664308 7.2:+80601614 None:intergenic
AGGACTTAAAAGGTCAGTGA+GGG 0.665609 7.2:-80601327 MS.gene61993:CDS
AGCATTCAATGTCCCAACTG+AGG 0.669727 7.2:-80601747 MS.gene61993:CDS
CAGGACTTAAAAGGTCAGTG+AGG 0.673465 7.2:-80601328 MS.gene61993:CDS
TCACTAGCATCATAATCATG+AGG 0.682179 7.2:+80601119 None:intergenic
ACTGGTTAAGGATATTGTCG+TGG 0.683096 7.2:-80601516 MS.gene61993:CDS
TATTTGTACAGACTGAAACC+GGG 0.684002 7.2:-80601835 MS.gene61993:CDS
GTGAAAGGGATTGAAGCCTG+AGG 0.705654 7.2:+80600885 None:intergenic
TATTGTGAAACCAACTGACG+AGG 0.708861 7.2:-80601405 MS.gene61993:CDS
ATTGTCGTGGCAATAAAAGG+CGG 0.723987 7.2:-80601503 MS.gene61993:CDS
CTTCAGCATAGGGATCAGAG+TGG 0.738242 7.2:-80601587 MS.gene61993:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCAATGTTAATGATA+GGG - chr7.2:80600832-80600851 MS.gene61993:CDS 15.0%
!! TTAAAAAATTCTCAAGAAAC+TGG + chr7.2:80601870-80601889 None:intergenic 20.0%
!!! AGTTTCTTGAGAATTTTTTA+AGG - chr7.2:80601869-80601888 MS.gene61993:CDS 20.0%
!!! ATTATTTTAGAAACTGCTAT+GGG - chr7.2:80600600-80600619 MS.gene61993:CDS 20.0%
!!! CTATTTTCAATGTTAATGAT+AGG - chr7.2:80600831-80600850 MS.gene61993:CDS 20.0%
!!! TATTATTTTAGAAACTGCTA+TGG - chr7.2:80600599-80600618 MS.gene61993:CDS 20.0%
!!! TGAGAATTTTTTAAGGTTAT+TGG - chr7.2:80601876-80601895 MS.gene61993:CDS 20.0%
!! CTTTTGTTAATTGCAAAGAA+AGG - chr7.2:80601905-80601924 MS.gene61993:CDS 25.0%
!! TTTAGTTCCAGATAACAAAT+CGG + chr7.2:80600501-80600520 None:intergenic 25.0%
!!! TTATTTTAGAAACTGCTATG+GGG - chr7.2:80600601-80600620 MS.gene61993:CDS 25.0%
AATGTTAATGATAGGGTCAA+TGG - chr7.2:80600839-80600858 MS.gene61993:CDS 30.0%
AATTGCAAAGAAAGGAATGT+GGG - chr7.2:80601913-80601932 MS.gene61993:CDS 30.0%
ATGTTTCGGGAATAAGAAAA+TGG - chr7.2:80600154-80600173 MS.gene61993:CDS 30.0%
CAATGGATCCATTCAAAATA+AGG + chr7.2:80601133-80601152 None:intergenic 30.0%
CCTCAATTCAAAACGAAAAA+CGG - chr7.2:80601559-80601578 MS.gene61993:CDS 30.0%
CTTGAAAAATGATCTAAGTG+TGG - chr7.2:80600343-80600362 MS.gene61993:CDS 30.0%
CTTTGCAATTAACAAAAGCT+GGG + chr7.2:80601903-80601922 None:intergenic 30.0%
TAATTGCAAAGAAAGGAATG+TGG - chr7.2:80601912-80601931 MS.gene61993:CDS 30.0%
TCTTTGCAATTAACAAAAGC+TGG + chr7.2:80601904-80601923 None:intergenic 30.0%
TCTTTGTCTACCTGAAAATT+TGG - chr7.2:80601102-80601121 MS.gene61993:CDS 30.0%
TGATTCAGAAATGCTTAGAA+TGG - chr7.2:80601219-80601238 MS.gene61993:CDS 30.0%
TTGCTTATTTGCTTCTTGTT+TGG + chr7.2:80600875-80600894 None:intergenic 30.0%
! TAAGGATCTTCCAAATTTTC+AGG + chr7.2:80601115-80601134 None:intergenic 30.0%
! TTTTGTGAAGCTAACAGATA+TGG - chr7.2:80601828-80601847 MS.gene61993:CDS 30.0%
!! TCAGATAGCTTTGAAATATC+AGG + chr7.2:80601682-80601701 None:intergenic 30.0%
!! TTTTTCGTTTTGAATTGAGG+AGG + chr7.2:80601559-80601578 None:intergenic 30.0%
!!! CTTATTTTGAATGGATCCAT+TGG - chr7.2:80601131-80601150 MS.gene61993:CDS 30.0%
!!! TGGAAGATCCTTATTTTGAA+TGG - chr7.2:80601122-80601141 MS.gene61993:CDS 30.0%
AAAATGGAAAGAAAGCCTTC+TGG - chr7.2:80600170-80600189 MS.gene61993:CDS 35.0%
AAAGGAGTGGATCATTAGTA+GGG - chr7.2:80601758-80601777 MS.gene61993:CDS 35.0%
ACAAAACCTTTCGGATTGTT+TGG + chr7.2:80600671-80600690 None:intergenic 35.0%
ACTCAAGCTTTCTAAACTAG+AGG - chr7.2:80601591-80601610 MS.gene61993:CDS 35.0%
AGCATTTCTGAATCACGAAA+CGG + chr7.2:80601214-80601233 None:intergenic 35.0%
ATAAGTGAACTTTCCTCAGT+TGG + chr7.2:80600308-80600327 None:intergenic 35.0%
CAAAATGATCATGGTCAAGA+AGG + chr7.2:80600772-80600791 None:intergenic 35.0%
CTCGCAATCTAACTGAAAAA+TGG + chr7.2:80601479-80601498 None:intergenic 35.0%
GAGCAACCAATAATCTCAAT+CGG + chr7.2:80600479-80600498 None:intergenic 35.0%
GAGGAAAGTTCACTTATTTG+CGG - chr7.2:80600311-80600330 MS.gene61993:CDS 35.0%
GATATTGTCGTGGCAATAAA+AGG - chr7.2:80600533-80600552 MS.gene61993:CDS 35.0%
GATTATGATGCTAGTGATCA+CGG - chr7.2:80600926-80600945 MS.gene61993:CDS 35.0%
GCTTGAGCTAATATGTATTG+AGG - chr7.2:80601390-80601409 MS.gene61993:CDS 35.0%
GCTTTACCAACAAAACCTTT+CGG + chr7.2:80600680-80600699 None:intergenic 35.0%
GTATTTGTACAGACTGAAAC+CGG - chr7.2:80600203-80600222 MS.gene61993:CDS 35.0%
TAAGTGAACTTTCCTCAGTT+GGG + chr7.2:80600307-80600326 None:intergenic 35.0%
TACTGTGAAGAGGAAATTAC+AGG - chr7.2:80600268-80600287 MS.gene61993:CDS 35.0%
TAGTTTAGAAAGCTTGAGTC+TGG + chr7.2:80601590-80601609 None:intergenic 35.0%
TATTTGTACAGACTGAAACC+GGG - chr7.2:80600204-80600223 MS.gene61993:CDS 35.0%
TCACTAGCATCATAATCATG+AGG + chr7.2:80600923-80600942 None:intergenic 35.0%
TGAAAAACACAACGATCGAT+GGG - chr7.2:80601707-80601726 MS.gene61993:CDS 35.0%
TGGAACTAAACAACTGGTTA+AGG - chr7.2:80600511-80600530 MS.gene61993:CDS 35.0%
TTATTCCCGAAACATTCACT+AGG + chr7.2:80600149-80600168 None:intergenic 35.0%
! GTTATCTGGAACTAAACAAC+TGG - chr7.2:80600505-80600524 MS.gene61993:CDS 35.0%
!! AACAATCCGAAAGGTTTTGT+TGG - chr7.2:80600671-80600690 MS.gene61993:CDS 35.0%
!! CCGTTTTTCGTTTTGAATTG+AGG + chr7.2:80601562-80601581 None:intergenic 35.0%
!! TTCTCTTCTGAGACGAAATT+TGG - chr7.2:80601439-80601458 MS.gene61993:CDS 35.0%
AAATCGGCGATATGATGAGT+AGG - chr7.2:80601335-80601354 MS.gene61993:CDS 40.0%
AAGAAAGGAATGTGGGAAAG+AGG - chr7.2:80601920-80601939 MS.gene61993:CDS 40.0%
AAGCATGCTTCACGAATCAT+GGG + chr7.2:80601250-80601269 None:intergenic 40.0%
AATACACGTCTTCTACCAGA+AGG + chr7.2:80600188-80600207 None:intergenic 40.0%
AATCGGCGATATGATGAGTA+GGG - chr7.2:80601336-80601355 MS.gene61993:CDS 40.0%
ACAATGCACATACTGTGAAG+AGG - chr7.2:80600258-80600277 MS.gene61993:CDS 40.0%
ACATATTAGCTCAAGCTCAC+TGG + chr7.2:80601386-80601405 None:intergenic 40.0%
ACTGGTTAAGGATATTGTCG+TGG - chr7.2:80600523-80600542 MS.gene61993:CDS 40.0%
AGACAAAGACCATGATCGAT+AGG + chr7.2:80601091-80601110 None:intergenic 40.0%
AGGACTTAAAAGGTCAGTGA+GGG - chr7.2:80600712-80600731 MS.gene61993:CDS 40.0%
AGTAGGGAATTTCACTGTCA+TGG - chr7.2:80601352-80601371 MS.gene61993:CDS 40.0%
AGTGGACCGATTGAGATTAT+TGG - chr7.2:80600470-80600489 MS.gene61993:CDS 40.0%
ATGCAGGAAATCTTCTTGTC+AGG - chr7.2:80601023-80601042 MS.gene61993:CDS 40.0%
ATTGTCGTGGCAATAAAAGG+CGG - chr7.2:80600536-80600555 MS.gene61993:CDS 40.0%
CAAAGGAGTGGATCATTAGT+AGG - chr7.2:80601757-80601776 MS.gene61993:CDS 40.0%
CAGATATGGATGAAGAGAAG+TGG - chr7.2:80601842-80601861 MS.gene61993:CDS 40.0%
CATATTAGCTCAAGCTCACT+GGG + chr7.2:80601385-80601404 None:intergenic 40.0%
GATGCATATACCAACTCCAT+GGG - chr7.2:80601646-80601665 MS.gene61993:CDS 40.0%
GCACGTTTGCAAAATGATCA+TGG + chr7.2:80600781-80600800 None:intergenic 40.0%
GCATTTCTGAATCACGAAAC+GGG + chr7.2:80601213-80601232 None:intergenic 40.0%
GGTCTTTGTCTAGCAGAAAT+CGG - chr7.2:80601319-80601338 MS.gene61993:CDS 40.0%
GTGAAAAACACAACGATCGA+TGG - chr7.2:80601706-80601725 MS.gene61993:CDS 40.0%
TACCAACTCCATGGGAAAAT+TGG - chr7.2:80601654-80601673 MS.gene61993:CDS 40.0%
TATGCACCAAACAATCCGAA+AGG - chr7.2:80600662-80600681 MS.gene61993:CDS 40.0%
TATTGTGAAACCAACTGACG+AGG - chr7.2:80600634-80600653 MS.gene61993:CDS 40.0%
TCATTAGTAGGGACATCATC+TGG - chr7.2:80601769-80601788 MS.gene61993:CDS 40.0%
TGAGTTCATCGTCAGTGAAA+GGG + chr7.2:80601171-80601190 None:intergenic 40.0%
TGATGCATATACCAACTCCA+TGG - chr7.2:80601645-80601664 MS.gene61993:CDS 40.0%
TTAAACACAGACAGACATGC+AGG - chr7.2:80601007-80601026 MS.gene61993:CDS 40.0%
TTCTGCTAGACAAAGACCAA+AGG + chr7.2:80601317-80601336 None:intergenic 40.0%
TTCTTGTCAGGAAGCTTGAT+GGG - chr7.2:80601035-80601054 MS.gene61993:CDS 40.0%
TTGAGTTCATCGTCAGTGAA+AGG + chr7.2:80601172-80601191 None:intergenic 40.0%
TTGGACAACCAGGACTTAAA+AGG - chr7.2:80600702-80600721 MS.gene61993:CDS 40.0%
! ACTAGAGGAAAGTGTGATAG+AGG - chr7.2:80601606-80601625 MS.gene61993:CDS 40.0%
!! GAGCTTTTTCCTATCGATCA+TGG - chr7.2:80601079-80601098 MS.gene61993:CDS 40.0%
!! TTCGGATTGTTTGGTGCATA+AGG + chr7.2:80600662-80600681 None:intergenic 40.0%
!!! GGTTTTGTTGGTAAAGCTCT+TGG - chr7.2:80600683-80600702 MS.gene61993:CDS 40.0%
AAGAGGCAGAGACAAAGACT+TGG - chr7.2:80601937-80601956 MS.gene61993:CDS 45.0%
AAGTTCCTGGTGAGAAGAAG+TGG + chr7.2:80600383-80600402 None:intergenic 45.0%
ACCTTCACGAGAGAAGTAGA+AGG + chr7.2:80600803-80600822 None:intergenic 45.0%
AGCATTCAATGTCCCAACTG+AGG - chr7.2:80600292-80600311 MS.gene61993:CDS 45.0%
ATTCTCCACTTCTTCTCACC+AGG - chr7.2:80600375-80600394 MS.gene61993:CDS 45.0%
CAAGCATGCTTCACGAATCA+TGG + chr7.2:80601251-80601270 None:intergenic 45.0%
CACCTGTTTACATCACGAGA+TGG - chr7.2:80600100-80600119 MS.gene61993:CDS 45.0%
CAGGACTTAAAAGGTCAGTG+AGG - chr7.2:80600711-80600730 MS.gene61993:CDS 45.0%
CTCGTGATGTAAACAGGTGT+CGG + chr7.2:80600099-80600118 None:intergenic 45.0%
CTGTTTACATCACGAGATGG+CGG - chr7.2:80600103-80600122 MS.gene61993:CDS 45.0%
CTTAAAAGGTCAGTGAGGGT+TGG - chr7.2:80600716-80600735 MS.gene61993:CDS 45.0%
CTTCTTGTCAGGAAGCTTGA+TGG - chr7.2:80601034-80601053 MS.gene61993:CDS 45.0%
GGCATCCTAGTGAATGTTTC+GGG - chr7.2:80600141-80600160 MS.gene61993:CDS 45.0%
GGGCATCCTAGTGAATGTTT+CGG - chr7.2:80600140-80600159 MS.gene61993:CDS 45.0%
TGATTCGTGAAGCATGCTTG+CGG - chr7.2:80601251-80601270 MS.gene61993:CDS 45.0%
TTCACTTATTTGCGGCGACA+CGG - chr7.2:80600319-80600338 MS.gene61993:CDS 45.0%
! AGAGGAAAGTGTGATAGAGG+AGG - chr7.2:80601609-80601628 MS.gene61993:CDS 45.0%
! ATCAGGCACCAATTTTCCCA+TGG + chr7.2:80601665-80601684 None:intergenic 45.0%
! CACCAATTTTCCCATGGAGT+TGG + chr7.2:80601659-80601678 None:intergenic 45.0%
! GAAAGTGTGATAGAGGAGGA+GGG - chr7.2:80601613-80601632 MS.gene61993:CDS 45.0%
!! CTCACTGACCTTTTAAGTCC+TGG + chr7.2:80600713-80600732 None:intergenic 45.0%
!! GGTTGCTCCGATTTGTTATC+TGG - chr7.2:80600491-80600510 MS.gene61993:CDS 45.0%
!! TGTAAACAGGTGTCGGAATC+AGG + chr7.2:80600092-80600111 None:intergenic 45.0%
AACCCACTCTGAACAGGGAT+CGG + chr7.2:80600569-80600588 None:intergenic 50.0%
AACCGATCCCTGTTCAGAGT+GGG - chr7.2:80600564-80600583 MS.gene61993:CDS 50.0%
ACTCCTGTGCAGAAAGTTCC+TGG + chr7.2:80600396-80600415 None:intergenic 50.0%
ACTGAAACCGGGTGTGTTCT+AGG - chr7.2:80600215-80600234 MS.gene61993:CDS 50.0%
AGAACTCGGGTGTGAAGCAA+AGG - chr7.2:80601740-80601759 MS.gene61993:CDS 50.0%
ATGGCGGCTGCAACTTTCAA+AGG - chr7.2:80600119-80600138 MS.gene61993:CDS 50.0%
CCTATGCTGAAGATCCCTAC+CGG + chr7.2:80600444-80600463 None:intergenic 50.0%
CGCCATCTCGTGATGTAAAC+AGG + chr7.2:80600105-80600124 None:intergenic 50.0%
CGGTAGGGATCTTCAGCATA+GGG - chr7.2:80600442-80600461 MS.gene61993:CDS 50.0%
CTCAAAGAAGCAGCAGCCTT+TGG - chr7.2:80601298-80601317 MS.gene61993:CDS 50.0%
CTCCTAACCCACTCTGAACA+GGG + chr7.2:80600574-80600593 None:intergenic 50.0%
CTTCAGCATAGGGATCAGAG+TGG - chr7.2:80600452-80600471 MS.gene61993:CDS 50.0%
GATTCGTGAAGCATGCTTGC+GGG - chr7.2:80601252-80601271 MS.gene61993:CDS 50.0%
GCATAAGGTTCCTCGTCAGT+TGG + chr7.2:80600647-80600666 None:intergenic 50.0%
GCCTTCTACTTCTCTCGTGA+AGG - chr7.2:80600799-80600818 MS.gene61993:CDS 50.0%
GGTAAAGCTCTTGGACAACC+AGG - chr7.2:80600692-80600711 MS.gene61993:CDS 50.0%
GTGAAAGGGATTGAAGCCTG+AGG + chr7.2:80601157-80601176 None:intergenic 50.0%
GTTGCTGCTGTTCACAGGAT+CGG - chr7.2:80600965-80600984 MS.gene61993:CDS 50.0%
TCACCAGGAACTTTCTGCAC+AGG - chr7.2:80600390-80600409 MS.gene61993:CDS 50.0%
TCACTGTTGCTGCTGTTCAC+AGG - chr7.2:80600960-80600979 MS.gene61993:CDS 50.0%
TGAGGAGGTAGCACTACTGT+TGG + chr7.2:80601544-80601563 None:intergenic 50.0%
TGGCGGCTGCAACTTTCAAA+GGG - chr7.2:80600120-80600139 MS.gene61993:CDS 50.0%
TGGGAGAAGTCTGCAGAACT+CGG - chr7.2:80601726-80601745 MS.gene61993:CDS 50.0%
TGGGCTTGGAAGGTTTGATC+AGG - chr7.2:80601054-80601073 MS.gene61993:CDS 50.0%
TTCCATGCCTAGAACACACC+CGG + chr7.2:80600225-80600244 None:intergenic 50.0%
! ATCCCTGTTCAGAGTGGGTT+AGG - chr7.2:80600569-80600588 MS.gene61993:CDS 50.0%
! CAAAGGCTGCTGCTTCTTTG+AGG + chr7.2:80601300-80601319 None:intergenic 50.0%
! GGAAAGTGTGATAGAGGAGG+AGG - chr7.2:80601612-80601631 MS.gene61993:CDS 50.0%
! TGAAGCATGCTTGCGGGTTT+TGG - chr7.2:80601258-80601277 MS.gene61993:CDS 50.0%
! TGAATGGATCCATTGGCCTC+AGG - chr7.2:80601138-80601157 MS.gene61993:CDS 50.0%
CCGGTAGGGATCTTCAGCAT+AGG - chr7.2:80600441-80600460 MS.gene61993:CDS 55.0%
CCTCCTAACCCACTCTGAAC+AGG + chr7.2:80600575-80600594 None:intergenic 55.0%
GAACCGATCCCTGTTCAGAG+TGG - chr7.2:80600563-80600582 MS.gene61993:CDS 55.0%
GGATTGAAGCCTGAGGCCAA+TGG + chr7.2:80601150-80601169 None:intergenic 55.0%
GGGAGAAGTCTGCAGAACTC+GGG - chr7.2:80601727-80601746 MS.gene61993:CDS 55.0%
GTCAGTGAGGGTTGGAGAGA+CGG - chr7.2:80600724-80600743 MS.gene61993:CDS 55.0%
TCAGTGAGGGTTGGAGAGAC+GGG - chr7.2:80600725-80600744 MS.gene61993:CDS 55.0%
TCGGGTGTGAAGCAAAGGAG+TGG - chr7.2:80601745-80601764 MS.gene61993:CDS 55.0%
TGCTGAAGATCCCTACCGGT+CGG + chr7.2:80600440-80600459 None:intergenic 55.0%
! AACCGGGTGTGTTCTAGGCA+TGG - chr7.2:80600220-80600239 MS.gene61993:CDS 55.0%
!! CCTGTTCAGAGTGGGTTAGG+AGG - chr7.2:80600572-80600591 MS.gene61993:CDS 55.0%
!! GGAAGCTTGATGGGCTTGGA+AGG - chr7.2:80601044-80601063 MS.gene61993:CDS 55.0%
!! GTCAGGAAGCTTGATGGGCT+TGG - chr7.2:80601040-80601059 MS.gene61993:CDS 55.0%
ACACCGTGCCTTTCTCCGAC+CGG - chr7.2:80600422-80600441 MS.gene61993:CDS 60.0%
CTACCGGTCGGAGAAAGGCA+CGG + chr7.2:80600428-80600447 None:intergenic 60.0%
GATCCCTACCGGTCGGAGAA+AGG + chr7.2:80600433-80600452 None:intergenic 60.0%
GTGCCTTTCTCCGACCGGTA+GGG - chr7.2:80600427-80600446 MS.gene61993:CDS 60.0%
CGTGCCTTTCTCCGACCGGT+AGG - chr7.2:80600426-80600445 MS.gene61993:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 80600083 80601978 80600083 ID=MS.gene61993
chr7.2 mRNA 80600083 80601978 80600083 ID=MS.gene61993.t1;Parent=MS.gene61993
chr7.2 exon 80600083 80601978 80600083 ID=MS.gene61993.t1.exon1;Parent=MS.gene61993.t1
chr7.2 CDS 80600083 80601978 80600083 ID=cds.MS.gene61993.t1;Parent=MS.gene61993.t1
Gene Sequence

>MS.gene61993

ATGTATCCTGATTCCGACACCTGTTTACATCACGAGATGGCGGCTGCAACTTTCAAAGGGCATCCTAGTGAATGTTTCGGGAATAAGAAAATGGAAAGAAAGCCTTCTGGTAGAAGACGTGTATTTGTACAGACTGAAACCGGGTGTGTTCTAGGCATGGAATTAGAAAGAAGTGACAATGCACATACTGTGAAGAGGAAATTACAGGTAGCATTCAATGTCCCAACTGAGGAAAGTTCACTTATTTGCGGCGACACGGTCTTGAAAAATGATCTAAGTGTGGTTAGAAATGATTCTCCACTTCTTCTCACCAGGAACTTTCTGCACAGGAGTTCATCTACACCGTGCCTTTCTCCGACCGGTAGGGATCTTCAGCATAGGGATCAGAGTGGACCGATTGAGATTATTGGTTGCTCCGATTTGTTATCTGGAACTAAACAACTGGTTAAGGATATTGTCGTGGCAATAAAAGGCGGCGTCGAACCGATCCCTGTTCAGAGTGGGTTAGGAGGTGCATATTATTTTAGAAACTGCTATGGGGAAAATGTCGCTATTGTGAAACCAACTGACGAGGAACCTTATGCACCAAACAATCCGAAAGGTTTTGTTGGTAAAGCTCTTGGACAACCAGGACTTAAAAGGTCAGTGAGGGTTGGAGAGACGGGTTTCAGAGAAGTTGCAGCTTACCTTCTTGACCATGATCATTTTGCAAACGTGCCTTCTACTTCTCTCGTGAAGGTTACACACACTATTTTCAATGTTAATGATAGGGTCAATGGTAATATGCATCCAAACAAGAAGCAAATAAGCAAGATTGCATCGCTGCAGCAGTACATTCCTCATGATTATGATGCTAGTGATCACGGAACTTCTAGTTTCACTGTTGCTGCTGTTCACAGGATCGGAATTTTAGACGTACGAATCTTAAACACAGACAGACATGCAGGAAATCTTCTTGTCAGGAAGCTTGATGGGCTTGGAAGGTTTGATCAGGTCGAGCTTTTTCCTATCGATCATGGTCTTTGTCTACCTGAAAATTTGGAAGATCCTTATTTTGAATGGATCCATTGGCCTCAGGCTTCAATCCCTTTCACTGACGATGAACTCAAATATATATCTCATCTAGACCCGTTTCGTGATTCAGAAATGCTTAGAATGGAGCTTCCCATGATTCGTGAAGCATGCTTGCGGGTTTTGGTTCTTTGCACTTTGTTCCTCAAAGAAGCAGCAGCCTTTGGTCTTTGTCTAGCAGAAATCGGCGATATGATGAGTAGGGAATTTCACTGTCATGGTGAAGAGCCCAGTGAGCTTGAGCTAATATGTATTGAGGCAAAGAAACTGTTTGATCATGAAGAGTTCTCTTCTGAGACGAAATTTGGAGACAAAGATGTGACCATTTTTCAGTTAGATTGCGAGCATGATCAAGATTCAGATTTCGCTGCAAATATAGAAGAGAAGCCAACAGTAGTGCTACCTCCTCAATTCAAAACGAAAAACGGAAACTCCAGACTCAAGCTTTCTAAACTAGAGGAAAGTGTGATAGAGGAGGAGGGAGAAGAATGTGATGCATATACCAACTCCATGGGAAAATTGGTGCCTGATATTTCAAAGCTATCTGAGTCAGTGAAAAACACAACGATCGATGGGAGAAGTCTGCAGAACTCGGGTGTGAAGCAAAGGAGTGGATCATTAGTAGGGACATCATCTGGAAATACTAGTGTGAATGAGTTGATTACTAGTTCAAGTTTTGTGAAGCTAACAGATATGGATGAAGAGAAGTGGAACCAGTTTCTTGAGAATTTTTTAAGGTTATTGGTCCCAGCTTTTGTTAATTGCAAAGAAAGGAATGTGGGAAAGAGGCAGAGACAAAGACTTGGAACATCATGCCAGTTTTAG

Protein sequence

>MS.gene61993.t1

MYPDSDTCLHHEMAAATFKGHPSECFGNKKMERKPSGRRRVFVQTETGCVLGMELERSDNAHTVKRKLQVAFNVPTEESSLICGDTVLKNDLSVVRNDSPLLLTRNFLHRSSSTPCLSPTGRDLQHRDQSGPIEIIGCSDLLSGTKQLVKDIVVAIKGGVEPIPVQSGLGGAYYFRNCYGENVAIVKPTDEEPYAPNNPKGFVGKALGQPGLKRSVRVGETGFREVAAYLLDHDHFANVPSTSLVKVTHTIFNVNDRVNGNMHPNKKQISKIASLQQYIPHDYDASDHGTSSFTVAAVHRIGILDVRILNTDRHAGNLLVRKLDGLGRFDQVELFPIDHGLCLPENLEDPYFEWIHWPQASIPFTDDELKYISHLDPFRDSEMLRMELPMIREACLRVLVLCTLFLKEAAAFGLCLAEIGDMMSREFHCHGEEPSELELICIEAKKLFDHEEFSSETKFGDKDVTIFQLDCEHDQDSDFAANIEEKPTVVLPPQFKTKNGNSRLKLSKLEESVIEEEGEECDAYTNSMGKLVPDISKLSESVKNTTIDGRSLQNSGVKQRSGSLVGTSSGNTSVNELITSSSFVKLTDMDEEKWNQFLENFLRLLVPAFVNCKERNVGKRQRQRLGTSCQF