Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63187.t1 | XP_013445797.1 | 93.2 | 914 | 60 | 2 | 1 | 913 | 1 | 913 | 0.00E+00 | 1750.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63187.t1 | Q94A41 | 66.0 | 846 | 258 | 9 | 68 | 909 | 66 | 885 | 0.0e+00 | 1166.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63187.t1 | A0A072TSJ2 | 93.2 | 914 | 60 | 2 | 1 | 913 | 1 | 913 | 0.0e+00 | 1750.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene63187 | 0.810255 | 1.26E-50 | -1.69E-46 |
| MS.gene049488 | MS.gene63187 | 0.830736 | 2.48E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene63187 | 0.804531 | 2.07E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene63187 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene05081 | MS.gene63187 | 0.831659 | 1.47E-55 | -1.69E-46 |
| MS.gene051552 | MS.gene63187 | -0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene63187 | 0.8234 | 1.41E-53 | -1.69E-46 |
| MS.gene052615 | MS.gene63187 | 0.827321 | 1.67E-54 | -1.69E-46 |
| MS.gene053480 | MS.gene63187 | 0.83479 | 2.45E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene63187 | 0.806673 | 7.34E-50 | -1.69E-46 |
| MS.gene054107 | MS.gene63187 | 0.847816 | 9.10E-60 | -1.69E-46 |
| MS.gene055206 | MS.gene63187 | 0.813817 | 2.11E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene63187 | 0.800746 | 1.25E-48 | -1.69E-46 |
| MS.gene056664 | MS.gene63187 | 0.831056 | 2.07E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene63187 | 0.802559 | 5.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63187.t1 | MTR_8g468990 | 95.514 | 914 | 39 | 2 | 1 | 913 | 1 | 913 | 0.0 | 1773 |
| MS.gene63187.t1 | MTR_8g468990 | 95.398 | 804 | 35 | 2 | 1 | 803 | 1 | 803 | 0.0 | 1547 |
| MS.gene63187.t1 | MTR_8g468990 | 96.078 | 765 | 29 | 1 | 149 | 913 | 1 | 764 | 0.0 | 1513 |
| MS.gene63187.t1 | MTR_7g013300 | 61.000 | 400 | 149 | 5 | 514 | 908 | 562 | 959 | 5.25e-176 | 535 |
| MS.gene63187.t1 | MTR_1g026170 | 48.485 | 396 | 193 | 6 | 518 | 909 | 43 | 431 | 8.19e-132 | 402 |
| MS.gene63187.t1 | MTR_1g019440 | 48.010 | 402 | 191 | 8 | 521 | 909 | 25 | 421 | 1.57e-123 | 380 |
| MS.gene63187.t1 | MTR_1g019480 | 40.887 | 406 | 197 | 12 | 521 | 911 | 25 | 402 | 1.97e-90 | 293 |
| MS.gene63187.t1 | MTR_3g062030 | 41.250 | 160 | 67 | 5 | 633 | 790 | 90 | 224 | 4.07e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63187.t1 | AT1G69830 | 63.916 | 909 | 302 | 10 | 3 | 909 | 1 | 885 | 0.0 | 1176 |
| MS.gene63187.t1 | AT1G76130 | 48.990 | 396 | 191 | 6 | 518 | 909 | 24 | 412 | 8.09e-132 | 402 |
| MS.gene63187.t1 | AT1G76130 | 48.990 | 396 | 191 | 6 | 518 | 909 | 24 | 412 | 8.09e-132 | 402 |
| MS.gene63187.t1 | AT4G25000 | 45.614 | 399 | 203 | 8 | 521 | 909 | 27 | 421 | 1.12e-109 | 345 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTCATTGGGGAGTTTC+TGG | 0.101267 | 8.4:+41054127 | MS.gene63187:CDS |
| GTAGCAAAAGTTTCAAATTT+TGG | 0.135634 | 8.4:-41053334 | None:intergenic |
| AAACTATTGTCTACCTTTAT+AGG | 0.158801 | 8.4:-41054530 | None:intergenic |
| CTCTTGGCTTTACTGTTATT+TGG | 0.163991 | 8.4:+41056899 | MS.gene63187:CDS |
| AAGGAGGATGCTAATTTAAT+TGG | 0.164978 | 8.4:+41054938 | MS.gene63187:CDS |
| TTGACTTTGTCAGAGGATTT+TGG | 0.166387 | 8.4:+41059144 | MS.gene63187:CDS |
| CGGCCAGTCTTTCAATTTCT+TGG | 0.176568 | 8.4:-41056654 | None:intergenic |
| AATGGTTTCTTGAGCTTCTT+TGG | 0.177720 | 8.4:-41056629 | None:intergenic |
| AATGGTATTTGGAACATATT+TGG | 0.190723 | 8.4:+41057550 | MS.gene63187:CDS |
| ACGGAAGAGACTACAATATT+TGG | 0.200100 | 8.4:+41061449 | MS.gene63187:CDS |
| TTGTATGCCAAGGGTTTAAT+TGG | 0.200911 | 8.4:+41056815 | MS.gene63187:CDS |
| GAAATAAGGCATTTGGTTAC+TGG | 0.216838 | 8.4:+41056574 | MS.gene63187:CDS |
| GAGAGAGAGTGTGAAGAATT+TGG | 0.221252 | 8.4:-41053241 | None:intergenic |
| CATCGGTTGCTTCCGAATTC+AGG | 0.254238 | 8.4:-41055591 | None:intergenic |
| CTTCCCTTTCCACTTCCTTT+TGG | 0.255177 | 8.4:-41056328 | None:intergenic |
| ATTTATATAATTTAAATTCT+AGG | 0.265509 | 8.4:+41056971 | MS.gene63187:CDS |
| AGAACCATAGCTAATATTAT+TGG | 0.273545 | 8.4:-41053272 | None:intergenic |
| ACAGTAACTTCCTTGGTTAA+AGG | 0.278492 | 8.4:-41055694 | None:intergenic |
| ACTTCCGGTAGCTTAGTTAT+TGG | 0.278855 | 8.4:+41056463 | MS.gene63187:CDS |
| ATAAACGTCCCTTTCTGATT+TGG | 0.282607 | 8.4:-41061335 | None:intergenic |
| TATTTCATTGATTATTTCAT+TGG | 0.290467 | 8.4:-41056557 | None:intergenic |
| ATGAAATAATCAATGAAATA+AGG | 0.296161 | 8.4:+41056560 | MS.gene63187:CDS |
| TGTGGAATCCGAGGTTGTTT+TGG | 0.299314 | 8.4:+41056732 | MS.gene63187:CDS |
| AAGAACACTGACGGAGTTCC+TGG | 0.299428 | 8.4:-41060432 | None:intergenic |
| GTTTCTGGTGTGAATGATAT+TGG | 0.304995 | 8.4:+41054142 | MS.gene63187:CDS |
| ATTTGGCTTGAAACGGTTAA+TGG | 0.313857 | 8.4:-41053224 | None:intergenic |
| TTAAGATAAATGAAAATTCA+TGG | 0.318297 | 8.4:+41056401 | MS.gene63187:CDS |
| CAGGAAAATGGATTCTTCAT+TGG | 0.338977 | 8.4:+41054116 | MS.gene63187:CDS |
| TATTTGGAGGTCGTCTCAAC+TGG | 0.344947 | 8.4:+41057566 | MS.gene63187:CDS |
| TACGTCCCTCTCTCAACTTC+CGG | 0.350003 | 8.4:+41056448 | MS.gene63187:CDS |
| AGTTTGGCGAACTCAATTAA+AGG | 0.353674 | 8.4:+41055897 | MS.gene63187:CDS |
| GTGAAAGAATTTCATAAAGT+TGG | 0.354126 | 8.4:+41057469 | MS.gene63187:CDS |
| AGGAAAATGGATTCTTCATT+GGG | 0.354934 | 8.4:+41054117 | MS.gene63187:CDS |
| ATCAGAATAAGAATGGTATT+TGG | 0.356883 | 8.4:+41057539 | MS.gene63187:CDS |
| GATGCAATCTACCAGGAAAA+TGG | 0.357710 | 8.4:+41054104 | MS.gene63187:CDS |
| AAGTTCAGTACAAATCTCTT+TGG | 0.357845 | 8.4:+41056348 | MS.gene63187:CDS |
| AATCAATGAAATAAGGCATT+TGG | 0.365401 | 8.4:+41056567 | MS.gene63187:CDS |
| AATTGGGAGTCTAATAAATC+TGG | 0.367354 | 8.4:+41056832 | MS.gene63187:CDS |
| AAGAATGGTTATGCTGGTTA+AGG | 0.367519 | 8.4:+41058210 | MS.gene63187:CDS |
| TCCTGGATCTATTCCTATAA+AGG | 0.369975 | 8.4:+41054517 | MS.gene63187:CDS |
| TACTCTCCCACGCAAAAGTA+TGG | 0.374781 | 8.4:-41059203 | None:intergenic |
| ATCCCTTGGCATGTATCCTT+CGG | 0.375227 | 8.4:-41056950 | None:intergenic |
| TACCAGTTCAATTCTGTTGA+TGG | 0.381799 | 8.4:-41053419 | None:intergenic |
| AATTTAATTGGACCTAAAAC+AGG | 0.381891 | 8.4:+41054950 | MS.gene63187:CDS |
| ATCTAAAGTTATCCTGAATT+CGG | 0.389157 | 8.4:+41055579 | MS.gene63187:CDS |
| AAGAATTCAGAGCTTATAGT+TGG | 0.392108 | 8.4:+41054082 | MS.gene63187:CDS |
| TCTCTATTCGGAAACGGAAC+GGG | 0.392449 | 8.4:+41060499 | MS.gene63187:CDS |
| TCCTCACTCATAGGGGACTT+AGG | 0.397654 | 8.4:+41055550 | MS.gene63187:intron |
| TCCTCTGGTAAACTATCTTA+AGG | 0.405222 | 8.4:+41054919 | MS.gene63187:CDS |
| CAGTTATACATATGGTGAAA+TGG | 0.406347 | 8.4:+41059238 | MS.gene63187:CDS |
| TAGAGATGATTCAAGAAGTT+GGG | 0.407862 | 8.4:+41055825 | MS.gene63187:CDS |
| TCCCTTGGCATGTATCCTTC+GGG | 0.413842 | 8.4:-41056949 | None:intergenic |
| AGTTCAGTACAAATCTCTTT+GGG | 0.413915 | 8.4:+41056349 | MS.gene63187:CDS |
| GTAGAGATGATTCAAGAAGT+TGG | 0.415469 | 8.4:+41055824 | MS.gene63187:CDS |
| CCTCACTCATAGGGGACTTA+GGG | 0.418657 | 8.4:+41055551 | MS.gene63187:intron |
| TCTTTCAATTTCTTGGAGAA+TGG | 0.419220 | 8.4:-41056647 | None:intergenic |
| TCTTTATATGCTACAGTTTG+TGG | 0.420943 | 8.4:-41055871 | None:intergenic |
| TAGCGGCACTTCTCTCTATT+CGG | 0.421298 | 8.4:+41060487 | MS.gene63187:CDS |
| TGGAGGCAACTCAGGTGATT+CGG | 0.422854 | 8.4:-41056758 | None:intergenic |
| TTGGCGCTTGTCGGATCAGC+AGG | 0.425045 | 8.4:+41059897 | MS.gene63187:CDS |
| CGGAAGAGACTACAATATTT+GGG | 0.425833 | 8.4:+41061450 | MS.gene63187:CDS |
| TAGCATATAAAGACACAGTT+TGG | 0.430766 | 8.4:+41055881 | MS.gene63187:CDS |
| ATAATGTCGGGAACAGGCAC+AGG | 0.439096 | 8.4:+41056784 | MS.gene63187:CDS |
| TCCTGTGAATGATCAATGTT+TGG | 0.444598 | 8.4:-41058167 | None:intergenic |
| TCATAAAGAGTATCTCCTTC+CGG | 0.451981 | 8.4:-41054675 | None:intergenic |
| TGTATGCCAAGGGTTTAATT+GGG | 0.452945 | 8.4:+41056816 | MS.gene63187:CDS |
| TCGATGCAGGACGAGGAAAC+TGG | 0.453145 | 8.4:+41054860 | MS.gene63187:intron |
| CTCTCTATTCGGAAACGGAA+CGG | 0.458500 | 8.4:+41060498 | MS.gene63187:CDS |
| TAGACTCCCAATTAAACCCT+TGG | 0.463111 | 8.4:-41056822 | None:intergenic |
| ACCATTCTTATTCTGATGCT+CGG | 0.463781 | 8.4:-41057533 | None:intergenic |
| TCCCATCAACAGAATTGAAC+TGG | 0.465937 | 8.4:+41053417 | MS.gene63187:CDS |
| TGAGAAACGATATTAAAGAA+TGG | 0.466017 | 8.4:+41058195 | MS.gene63187:CDS |
| CACAGAGTGAAGAATCCCTT+TGG | 0.466936 | 8.4:-41059345 | None:intergenic |
| GAGATACTCTTTATGAAGTC+AGG | 0.472117 | 8.4:+41054682 | MS.gene63187:CDS |
| TTTAAATTATATAAATCCCT+TGG | 0.473963 | 8.4:-41056964 | None:intergenic |
| GTGAAGAATTTGGCTTGAAA+CGG | 0.474351 | 8.4:-41053231 | None:intergenic |
| ATCTTGATTGTGCAGTAAAT+GGG | 0.476190 | 8.4:+41054469 | MS.gene63187:intron |
| GTTATTGACAGTAACTTCCT+TGG | 0.481501 | 8.4:-41055701 | None:intergenic |
| GATTCCCTCAGTTATACATA+TGG | 0.481642 | 8.4:+41059230 | MS.gene63187:CDS |
| AAGAGACTTCAAAGTTCCTC+TGG | 0.481998 | 8.4:+41054904 | MS.gene63187:CDS |
| ACTTCCAATAATATTAGCTA+TGG | 0.482038 | 8.4:+41053268 | MS.gene63187:CDS |
| CCCCGTGATATGATACCTCC+TGG | 0.484490 | 8.4:+41054500 | MS.gene63187:CDS |
| CTTTCTTCTATACAGGGGAG+GGG | 0.484650 | 8.4:+41058110 | MS.gene63187:intron |
| AATCGCTGAAATCTCATCGC+TGG | 0.484867 | 8.4:-41054718 | None:intergenic |
| AGAGGTTCTGAAGATACTAT+AGG | 0.486290 | 8.4:-41056683 | None:intergenic |
| CAGAAGATTGAATCTGTTGA+AGG | 0.487387 | 8.4:-41053369 | None:intergenic |
| GGCCACCATCCCATAACGCC+GGG | 0.488652 | 8.4:-41059928 | None:intergenic |
| ACCAGTTCAATTCTGTTGAT+GGG | 0.490268 | 8.4:-41053418 | None:intergenic |
| ATGTGAGTATTGGCGCTTGT+CGG | 0.492772 | 8.4:+41059888 | MS.gene63187:CDS |
| GCTAAAGAACTAGCATCTCT+TGG | 0.494064 | 8.4:+41056883 | MS.gene63187:CDS |
| CTCTACAAACTCCCCAATGA+AGG | 0.495764 | 8.4:-41055807 | None:intergenic |
| TTTCTCCGAGGAAGCTATTG+TGG | 0.498572 | 8.4:+41056714 | MS.gene63187:CDS |
| CACTTCTCTCTATTCGGAAA+CGG | 0.499973 | 8.4:+41060493 | MS.gene63187:CDS |
| TCTCCAAGAAATTGAAAGAC+TGG | 0.504338 | 8.4:+41056651 | MS.gene63187:CDS |
| TAAAATTACCAAATCAGAAA+GGG | 0.504939 | 8.4:+41061327 | MS.gene63187:CDS |
| AGACTACAATATTTGGGAGC+TGG | 0.510378 | 8.4:+41061456 | MS.gene63187:CDS |
| GTGTTTATAAGATTAGATCA+AGG | 0.510606 | 8.4:+41054049 | MS.gene63187:CDS |
| CGATCTGTTATGTAGCCAAA+AGG | 0.511112 | 8.4:+41056313 | MS.gene63187:intron |
| CATTTGATGTTACAACCAAA+GGG | 0.513448 | 8.4:+41059330 | MS.gene63187:CDS |
| CGTTGGAAAGATGTGAGTAT+TGG | 0.516547 | 8.4:+41059878 | MS.gene63187:CDS |
| TCCAGGAGGTATCATATCAC+GGG | 0.519553 | 8.4:-41054501 | None:intergenic |
| GCATTTGATGTTACAACCAA+AGG | 0.521112 | 8.4:+41059329 | MS.gene63187:CDS |
| TAGCCAAAAGGAAGTGGAAA+GGG | 0.521578 | 8.4:+41056325 | MS.gene63187:intron |
| ACTCTATCAGTGTCTCCGTT+AGG | 0.521785 | 8.4:+41055722 | MS.gene63187:CDS |
| GATGATGATGATTTCTTCAA+AGG | 0.524610 | 8.4:-41054651 | None:intergenic |
| ATCAAGATGCACACAGGCAG+AGG | 0.525851 | 8.4:+41059267 | MS.gene63187:CDS |
| GTTATGTAGCCAAAAGGAAG+TGG | 0.527882 | 8.4:+41056319 | MS.gene63187:intron |
| TAATCTGCAGGTGGAGGGAA+AGG | 0.530804 | 8.4:+41054027 | MS.gene63187:intron |
| ATAGCTTCCTCGGAGAAAGT+TGG | 0.534261 | 8.4:-41056709 | None:intergenic |
| ACAGGCAGAGGATCGTTGAC+TGG | 0.534572 | 8.4:+41059279 | MS.gene63187:CDS |
| GGTATTTGGAACATATTTGG+AGG | 0.534787 | 8.4:+41057553 | MS.gene63187:CDS |
| CACATCCTTCAGTTCATCAA+TGG | 0.535296 | 8.4:-41057446 | None:intergenic |
| ATATTAAAGAATGGTTATGC+TGG | 0.535991 | 8.4:+41058204 | MS.gene63187:CDS |
| GCTATCTTGAACTTTGTCAT+CGG | 0.536017 | 8.4:-41055608 | None:intergenic |
| TTATATGCTACAGTTTGTGG+TGG | 0.536406 | 8.4:-41055868 | None:intergenic |
| GGATTCCACAATAGCTTCCT+CGG | 0.538172 | 8.4:-41056719 | None:intergenic |
| GTTTGTGGTGGATGAGGAGC+AGG | 0.542061 | 8.4:-41055856 | None:intergenic |
| GAGAGTTTGAAATTGAAGAG+TGG | 0.543161 | 8.4:-41053181 | None:intergenic |
| TTAAAATTACCAAATCAGAA+AGG | 0.543716 | 8.4:+41061326 | MS.gene63187:CDS |
| AAAGTTGGAATCAAAGTGCT+AGG | 0.546749 | 8.4:+41057484 | MS.gene63187:CDS |
| AGTCTAATAAATCTGGAAGA+TGG | 0.547837 | 8.4:+41056839 | MS.gene63187:CDS |
| ACAGATTCTGTTTCGCCCGA+AGG | 0.547919 | 8.4:+41056934 | MS.gene63187:CDS |
| AGTGCTGCCGGTGGTACTGC+AGG | 0.548738 | 8.4:+41059305 | MS.gene63187:CDS |
| ATCGCTGAAATCTCATCGCT+GGG | 0.549931 | 8.4:-41054717 | None:intergenic |
| AGGGAAGAAATTGGATACGA+TGG | 0.556769 | 8.4:+41059113 | MS.gene63187:intron |
| CACAAACAAACCTGAAAATG+TGG | 0.557470 | 8.4:-41057616 | None:intergenic |
| TCCAAACATTGATCATTCAC+AGG | 0.559398 | 8.4:+41058166 | MS.gene63187:CDS |
| TAAATCTGGAAGATGGTACA+TGG | 0.559670 | 8.4:+41056846 | MS.gene63187:CDS |
| AAATTCATGGTTAAATAACA+AGG | 0.562174 | 8.4:+41056414 | MS.gene63187:CDS |
| CGCCCGAAGGATACATGCCA+AGG | 0.562200 | 8.4:+41056947 | MS.gene63187:CDS |
| GGGTATGAAATTGTATGCCA+AGG | 0.563869 | 8.4:+41056805 | MS.gene63187:CDS |
| TGTTTATAAGATTAGATCAA+GGG | 0.564271 | 8.4:+41054050 | MS.gene63187:CDS |
| GCTACAGTTTGTGGTGGATG+AGG | 0.564756 | 8.4:-41055862 | None:intergenic |
| ATCCAGGAGGTATCATATCA+CGG | 0.565082 | 8.4:-41054502 | None:intergenic |
| ACCTTTATAGGAATAGATCC+AGG | 0.566563 | 8.4:-41054518 | None:intergenic |
| GAAGAAATCATCATCATCAC+CGG | 0.568649 | 8.4:+41054656 | MS.gene63187:CDS |
| GCCGAGCATCAGAATAAGAA+TGG | 0.569584 | 8.4:+41057532 | MS.gene63187:CDS |
| TGTAGAACTGCCTTTAACCA+AGG | 0.570430 | 8.4:+41055684 | MS.gene63187:CDS |
| ACTCATAGGGGACTTAGGGC+AGG | 0.570493 | 8.4:+41055555 | MS.gene63187:intron |
| TGGCGGCTTGACTTTGTCAG+AGG | 0.572448 | 8.4:+41059137 | MS.gene63187:CDS |
| ACTCTTTATGAAGTCAGGAT+CGG | 0.574850 | 8.4:+41054687 | MS.gene63187:CDS |
| AGAACACTGACGGAGTTCCT+GGG | 0.576561 | 8.4:-41060431 | None:intergenic |
| CAATGAAGGAAAATATCACC+TGG | 0.578377 | 8.4:-41055793 | None:intergenic |
| GTTGCTATGAAGATCGGTCC+TGG | 0.578469 | 8.4:+41061379 | MS.gene63187:CDS |
| TTTATAGAAAACCACGACAC+TGG | 0.578589 | 8.4:+41059967 | MS.gene63187:CDS |
| CCACCATCCCATAACGCCGG+GGG | 0.578937 | 8.4:-41059926 | None:intergenic |
| AAATGCACCTGCAGTACCAC+CGG | 0.579580 | 8.4:-41059312 | None:intergenic |
| TGGTTATGTAAAGGACTACA+TGG | 0.581785 | 8.4:+41059169 | MS.gene63187:CDS |
| GAGTGAAGAGGCAGGCGAAG+AGG | 0.586230 | 8.4:+41056516 | MS.gene63187:CDS |
| GAAAGTTGTAAAGAGTGAAG+AGG | 0.588257 | 8.4:+41056504 | MS.gene63187:CDS |
| GTTGTAAAGAGTGAAGAGGC+AGG | 0.590094 | 8.4:+41056508 | MS.gene63187:CDS |
| TGTTTCTGAGCATTTCCTAA+CGG | 0.590931 | 8.4:-41055737 | None:intergenic |
| GTTGCCAATAACTAAGCTAC+CGG | 0.591340 | 8.4:-41056467 | None:intergenic |
| ACAGGCTTTAGTTTGTCCCA+AGG | 0.592504 | 8.4:+41054968 | MS.gene63187:CDS |
| GTAGCCAAAAGGAAGTGGAA+AGG | 0.595926 | 8.4:+41056324 | MS.gene63187:intron |
| GCCCGAAGGATACATGCCAA+GGG | 0.597044 | 8.4:+41056948 | MS.gene63187:CDS |
| AAATGTAATCTGCAGGTGGA+GGG | 0.600153 | 8.4:+41054022 | MS.gene63187:intron |
| GATTTAGAAACGGATATACC+AGG | 0.600340 | 8.4:+41055775 | MS.gene63187:CDS |
| CTACAATATTTGGGAGCTGG+AGG | 0.604343 | 8.4:+41061459 | MS.gene63187:CDS |
| AAGAAATTGGATACGATGGA+TGG | 0.606412 | 8.4:+41059117 | MS.gene63187:CDS |
| GATCAATGTTTGGAGCCGCA+TGG | 0.607937 | 8.4:-41058157 | None:intergenic |
| AAGGAAAATAGTCAAGCAGA+AGG | 0.609635 | 8.4:+41055655 | MS.gene63187:CDS |
| GGTATGAAATTGTATGCCAA+GGG | 0.609727 | 8.4:+41056806 | MS.gene63187:CDS |
| GTTGACTGGATTAGTGCTGC+CGG | 0.609834 | 8.4:+41059293 | MS.gene63187:CDS |
| GGGAGGGGCAACAAGAGTAG+TGG | 0.612121 | 8.4:+41058125 | MS.gene63187:CDS |
| ATTTGGAGGTCGTCTCAACT+GGG | 0.613014 | 8.4:+41057567 | MS.gene63187:CDS |
| ATAGTTGGATGCAATCTACC+AGG | 0.613023 | 8.4:+41054097 | MS.gene63187:CDS |
| CTAGGTGGTTCATAATGACC+AGG | 0.616324 | 8.4:-41061397 | None:intergenic |
| AGAAGATTGAATCTGTTGAA+GGG | 0.618052 | 8.4:-41053368 | None:intergenic |
| ATCATAATCAAGATGCACAC+AGG | 0.619941 | 8.4:+41059261 | MS.gene63187:CDS |
| CGGCCACCATCCCATAACGC+CGG | 0.620704 | 8.4:-41059929 | None:intergenic |
| AGGACGAGGAAACTGGCACT+TGG | 0.620719 | 8.4:+41054867 | MS.gene63187:intron |
| TTCGGATTCCAAAACAACCT+CGG | 0.621124 | 8.4:-41056740 | None:intergenic |
| CCACGACACTGGTTCTACAC+AGG | 0.621703 | 8.4:+41059978 | MS.gene63187:CDS |
| ATAAAAGTAACGGCACGAGA+CGG | 0.624117 | 8.4:-41059949 | None:intergenic |
| TCCTTAAGATAGTTTACCAG+AGG | 0.626240 | 8.4:-41054920 | None:intergenic |
| CTCTGTTCCAACTTTCTCCG+AGG | 0.626907 | 8.4:+41056702 | MS.gene63187:CDS |
| GAAACAGAATCTGTAGGTGG+CGG | 0.627936 | 8.4:-41056925 | None:intergenic |
| TGGTACCATTGATGAACTGA+AGG | 0.629503 | 8.4:+41057441 | MS.gene63187:CDS |
| AGCTACCGGAAGTTGAGAGA+GGG | 0.630982 | 8.4:-41056453 | None:intergenic |
| AATTCATGGTTAAATAACAA+GGG | 0.635549 | 8.4:+41056415 | MS.gene63187:CDS |
| TTCACCATATGTATAACTGA+GGG | 0.635616 | 8.4:-41059234 | None:intergenic |
| AAATGGAAATCAGCTTGGGA+CGG | 0.636057 | 8.4:+41061430 | MS.gene63187:CDS |
| TGGTTCAGAGAAAACAGTGG+TGG | 0.636081 | 8.4:-41053161 | None:intergenic |
| GAAGATACTATAGGCTTCAG+CGG | 0.639584 | 8.4:-41056674 | None:intergenic |
| CTCGGAGAAAGTTGGAACAG+AGG | 0.639646 | 8.4:-41056701 | None:intergenic |
| CATTGATGAACTGAAGGATG+TGG | 0.641184 | 8.4:+41057447 | MS.gene63187:CDS |
| TTTCACCATATGTATAACTG+AGG | 0.642730 | 8.4:-41059235 | None:intergenic |
| AAATCATCATCATCACCGGA+AGG | 0.643044 | 8.4:+41054660 | MS.gene63187:CDS |
| TGTGGTGGATGAGGAGCAGG+TGG | 0.645049 | 8.4:-41055853 | None:intergenic |
| ATGTGGTCAAAGAACACTGA+CGG | 0.646715 | 8.4:-41060441 | None:intergenic |
| TTTGGAGAGAGAAACTTATG+GGG | 0.652371 | 8.4:-41053316 | None:intergenic |
| GGTTAATGGTAGCTAATCTG+TGG | 0.652438 | 8.4:-41053210 | None:intergenic |
| CCCCACGGAAAAGAAATGCA+AGG | 0.652968 | 8.4:+41060387 | MS.gene63187:CDS |
| AAGCTACCGGAAGTTGAGAG+AGG | 0.653276 | 8.4:-41056454 | None:intergenic |
| TCTGGTAAACTATCTTAAGG+AGG | 0.654888 | 8.4:+41054922 | MS.gene63187:CDS |
| GGAAGCTATTGTGGAATCCG+AGG | 0.655431 | 8.4:+41056723 | MS.gene63187:CDS |
| TCGGGCGAAACAGAATCTGT+AGG | 0.656586 | 8.4:-41056931 | None:intergenic |
| CTGGTGTGAATGATATTGGA+AGG | 0.661051 | 8.4:+41054146 | MS.gene63187:CDS |
| CTTAGTTATTGGCAACAGAG+AGG | 0.664219 | 8.4:+41056474 | MS.gene63187:CDS |
| TAATGTCGGGAACAGGCACA+GGG | 0.666101 | 8.4:+41056785 | MS.gene63187:CDS |
| CCTGTGTAGAACCAGTGTCG+TGG | 0.669185 | 8.4:-41059978 | None:intergenic |
| GCTTATACTCTTACTCACCC+AGG | 0.670081 | 8.4:+41060414 | MS.gene63187:CDS |
| GCCACCATCCCATAACGCCG+GGG | 0.671307 | 8.4:-41059927 | None:intergenic |
| AAATTGGATACGATGGATGG+CGG | 0.672988 | 8.4:+41059120 | MS.gene63187:CDS |
| GGCGAAACAGAATCTGTAGG+TGG | 0.677074 | 8.4:-41056928 | None:intergenic |
| CACCATCCCATAACGCCGGG+GGG | 0.681225 | 8.4:-41059925 | None:intergenic |
| CCAGGAGGTATCATATCACG+GGG | 0.685523 | 8.4:-41054500 | None:intergenic |
| GGCACTTGGTATCAACACAA+AGG | 0.687243 | 8.4:+41054881 | MS.gene63187:CDS |
| GACTGGATTAGTGCTGCCGG+TGG | 0.691174 | 8.4:+41059296 | MS.gene63187:CDS |
| TGGCGCTTGTCGGATCAGCA+GGG | 0.692297 | 8.4:+41059898 | MS.gene63187:CDS |
| GGAAAATGGATTCTTCATTG+GGG | 0.692856 | 8.4:+41054118 | MS.gene63187:CDS |
| GGAGGTATCATATCACGGGG+TGG | 0.712340 | 8.4:-41054497 | None:intergenic |
| GGTCATTGGAGATTTCCCCA+CGG | 0.723859 | 8.4:+41060372 | MS.gene63187:CDS |
| TAGTGGAGATAGTTTCCATG+CGG | 0.748696 | 8.4:+41058142 | MS.gene63187:CDS |
| GAGTGGTTCAGAGAAAACAG+TGG | 0.759302 | 8.4:-41053164 | None:intergenic |
| TTTATAGGAATAGATCCAGG+AGG | 0.764420 | 8.4:-41054515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 41053151 | 41061489 | 41053151 | ID=MS.gene63187 |
| chr8.4 | mRNA | 41053151 | 41061489 | 41053151 | ID=MS.gene63187.t1;Parent=MS.gene63187 |
| chr8.4 | exon | 41053151 | 41053438 | 41053151 | ID=MS.gene63187.t1.exon1;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41053151 | 41053438 | 41053151 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41054037 | 41054167 | 41054037 | ID=MS.gene63187.t1.exon2;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41054037 | 41054167 | 41054037 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41054484 | 41054538 | 41054484 | ID=MS.gene63187.t1.exon3;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41054484 | 41054538 | 41054484 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41054633 | 41054755 | 41054633 | ID=MS.gene63187.t1.exon4;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41054633 | 41054755 | 41054633 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41054869 | 41054989 | 41054869 | ID=MS.gene63187.t1.exon5;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41054869 | 41054989 | 41054869 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41055563 | 41055918 | 41055563 | ID=MS.gene63187.t1.exon6;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41055563 | 41055918 | 41055563 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41056328 | 41056992 | 41056328 | ID=MS.gene63187.t1.exon7;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41056328 | 41056992 | 41056328 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41057438 | 41057627 | 41057438 | ID=MS.gene63187.t1.exon8;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41057438 | 41057627 | 41057438 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41058125 | 41058231 | 41058125 | ID=MS.gene63187.t1.exon9;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41058125 | 41058231 | 41058125 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41059115 | 41059364 | 41059115 | ID=MS.gene63187.t1.exon10;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41059115 | 41059364 | 41059115 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41059877 | 41059999 | 41059877 | ID=MS.gene63187.t1.exon11;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41059877 | 41059999 | 41059877 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41060372 | 41060539 | 41060372 | ID=MS.gene63187.t1.exon12;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41060372 | 41060539 | 41060372 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| chr8.4 | exon | 41061325 | 41061489 | 41061325 | ID=MS.gene63187.t1.exon13;Parent=MS.gene63187.t1 |
| chr8.4 | CDS | 41061325 | 41061489 | 41061325 | ID=cds.MS.gene63187.t1;Parent=MS.gene63187.t1 |
| Gene Sequence |
| Protein sequence |
