Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63450.t1 | XP_013453041.1 | 97.9 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.10E-97 | 365.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63450.t1 | Q9ZNS1 | 81.6 | 190 | 35 | 0 | 1 | 190 | 1 | 190 | 1.6e-84 | 313.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63450.t1 | B7FGT0 | 97.9 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 8.1e-98 | 365.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050791 | MS.gene63450 | 0.825994 | 3.46E-54 | -1.69E-46 |
MS.gene052412 | MS.gene63450 | 0.988189 | 4.72E-173 | -1.69E-46 |
MS.gene057092 | MS.gene63450 | 0.800037 | 1.74E-48 | -1.69E-46 |
MS.gene057643 | MS.gene63450 | 0.800042 | 1.73E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene028153 | MS.gene63450 | PPI |
MS.gene72768 | MS.gene63450 | PPI |
MS.gene82426 | MS.gene63450 | PPI |
MS.gene83444 | MS.gene63450 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63450.t1 | MTR_6g085000 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 2.18e-137 | 381 |
MS.gene63450.t1 | MTR_6g021670 | 97.382 | 191 | 5 | 0 | 1 | 191 | 1 | 191 | 4.81e-137 | 380 |
MS.gene63450.t1 | MTR_8g087480 | 63.636 | 44 | 8 | 1 | 145 | 188 | 51 | 86 | 8.01e-12 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63450.t1 | AT1G48830 | 79.058 | 191 | 40 | 0 | 1 | 191 | 1 | 191 | 1.48e-114 | 324 |
MS.gene63450.t1 | AT1G48830 | 79.058 | 191 | 40 | 0 | 1 | 191 | 1 | 191 | 1.48e-114 | 324 |
MS.gene63450.t1 | AT3G02560 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.50e-113 | 320 |
MS.gene63450.t1 | AT3G02560 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.50e-113 | 320 |
MS.gene63450.t1 | AT3G02560 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.50e-113 | 320 |
MS.gene63450.t1 | AT5G16130 | 80.319 | 188 | 37 | 0 | 1 | 188 | 1 | 188 | 1.92e-112 | 318 |
Find 51 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACAGCCAAGTTGATGTTTC+TGG | 0.145762 | 6.3:+79177547 | MS.gene63450:intron |
TCCTCAATCTGTAGGGGATA+TGG | 0.261869 | 6.3:-79177591 | None:intergenic |
AGAATCTACGCCTCAGTAAC+AGG | 0.280462 | 6.3:-79178667 | None:intergenic |
TGAGCAGCGGAGCCTTTCTT+TGG | 0.288203 | 6.3:-79178219 | None:intergenic |
ATAGTTTACCTTCATGATCT+TGG | 0.292174 | 6.3:-79178349 | None:intergenic |
AAATTCACGTCAAGCTCGTT+AGG | 0.363074 | 6.3:+79177626 | MS.gene63450:CDS |
CGTACTAGATACAGAATTGA+TGG | 0.367485 | 6.3:+79178324 | MS.gene63450:CDS |
GTTGCAGGCTTTGTTTGATC+TGG | 0.412438 | 6.3:+79177386 | MS.gene63450:intron |
CGCTGAGCCTACTGAATTTG+AGG | 0.426295 | 6.3:+79177253 | MS.gene63450:CDS |
GCAGCGGAGCCTTTCTTTGG+TGG | 0.435938 | 6.3:-79178216 | None:intergenic |
TTGTGAATATGTTTACTTCA+AGG | 0.441187 | 6.3:+79177207 | None:intergenic |
GCAGTTTACAGGAAACTCTC+AGG | 0.456482 | 6.3:+79178622 | MS.gene63450:CDS |
ATTTGAGGAGTCAGTTGGAC+AGG | 0.472058 | 6.3:+79177268 | MS.gene63450:CDS |
TGTTACCTGCTGAGATTGTT+GGG | 0.479284 | 6.3:+79178298 | MS.gene63450:CDS |
TGGTGGCCTGACGATTCTCC+TGG | 0.483590 | 6.3:-79178199 | None:intergenic |
GTGTTACCTGCTGAGATTGT+TGG | 0.484291 | 6.3:+79178297 | MS.gene63450:CDS |
TCCCCTACAGATTGAGGAAG+GGG | 0.499187 | 6.3:+79177596 | MS.gene63450:CDS |
CGTGGACAGCAGTGAGTGTA+CGG | 0.505350 | 6.3:-79178254 | None:intergenic |
ATCGTCAGGCCACCAAAGAA+AGG | 0.508890 | 6.3:+79178207 | MS.gene63450:CDS |
TTCTGGAAACCGCAAGGCTG+TGG | 0.509249 | 6.3:+79177564 | MS.gene63450:CDS |
TCCATATCCCCTACAGATTG+AGG | 0.509912 | 6.3:+79177590 | MS.gene63450:CDS |
TTGCCACCAGGAGAATCGTC+AGG | 0.510117 | 6.3:+79178193 | MS.gene63450:CDS |
GAAGAAAATCAGCAAGGACA+AGG | 0.510615 | 6.3:+79177229 | MS.gene63450:CDS |
GAACCCCTTCCTCAATCTGT+AGG | 0.515858 | 6.3:-79177599 | None:intergenic |
AACCCCTTCCTCAATCTGTA+GGG | 0.520673 | 6.3:-79177598 | None:intergenic |
ACTGAATTTGAGGAGTCAGT+TGG | 0.548538 | 6.3:+79177263 | MS.gene63450:CDS |
AATTCACGTCAAGCTCGTTA+GGG | 0.550766 | 6.3:+79177627 | MS.gene63450:CDS |
GCTGCGTGGACGCTGAGCAG+CGG | 0.558388 | 6.3:-79178232 | None:intergenic |
CGTTTCCCAACAATCTCAGC+AGG | 0.558735 | 6.3:-79178303 | None:intergenic |
GTTTGAGTACCCTGTTACTG+AGG | 0.572498 | 6.3:+79178657 | MS.gene63450:CDS |
TATCCCCTACAGATTGAGGA+AGG | 0.573232 | 6.3:+79177594 | MS.gene63450:CDS |
GGTTTCCAGAAACATCAACT+TGG | 0.575562 | 6.3:-79177552 | None:intergenic |
ATGTAATCCTCATTGCCACC+AGG | 0.584954 | 6.3:+79178181 | MS.gene63450:CDS |
CGATTCTCCTGGTGGCAATG+AGG | 0.590532 | 6.3:-79178188 | None:intergenic |
AAGAAAATCAGCAAGGACAA+GGG | 0.599976 | 6.3:+79177230 | MS.gene63450:CDS |
CAGTTTACAGGAAACTCTCA+GGG | 0.612531 | 6.3:+79178623 | MS.gene63450:CDS |
TGAGAAGAAATTCAGCGGAA+AGG | 0.621961 | 6.3:+79177654 | MS.gene63450:CDS |
TGATGTTTCTGGAAACCGCA+AGG | 0.622049 | 6.3:+79177558 | MS.gene63450:CDS |
ATCCCCTACAGATTGAGGAA+GGG | 0.622569 | 6.3:+79177595 | MS.gene63450:CDS |
ACTGACTCCTCAAATTCAGT+AGG | 0.622702 | 6.3:-79177260 | None:intergenic |
ACCCCTTCCTCAATCTGTAG+GGG | 0.633929 | 6.3:-79177597 | None:intergenic |
TGATGGATCCAAGATCATGA+AGG | 0.639271 | 6.3:+79178341 | MS.gene63450:CDS |
TGTCCACGAGGCAATGCTCG+AGG | 0.642990 | 6.3:+79178269 | MS.gene63450:CDS |
TTCAAGGAAGAAAATCAGCA+AGG | 0.648771 | 6.3:+79177223 | MS.gene63450:CDS |
GCAGTGAGTGTACGGCTGCG+TGG | 0.657285 | 6.3:-79178246 | None:intergenic |
TACACTCACTGCTGTCCACG+AGG | 0.659160 | 6.3:+79178257 | MS.gene63450:CDS |
TGGCCTGACGATTCTCCTGG+TGG | 0.662830 | 6.3:-79178196 | None:intergenic |
TATGGATAACCACAGCCTTG+CGG | 0.675676 | 6.3:-79177573 | None:intergenic |
GAATCTACGCCTCAGTAACA+GGG | 0.678065 | 6.3:-79178666 | None:intergenic |
CATCCTCGAGCATTGCCTCG+TGG | 0.690997 | 6.3:-79178272 | None:intergenic |
GAGCTTGAGAAGAAATTCAG+CGG | 0.694607 | 6.3:+79177649 | MS.gene63450:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTGGAACAAAAAATTGT+CGG | - | chr6.3:79177751-79177770 | None:intergenic | 20.0% |
!! | AGAATAAAGTTCTTGAAATA+AGG | - | chr6.3:79177800-79177819 | None:intergenic | 20.0% |
!! | CAAATTATTTAGTGTATGTT+TGG | - | chr6.3:79178065-79178084 | None:intergenic | 20.0% |
!! | TTAAAGCAATTTAAAAACCA+AGG | - | chr6.3:79177835-79177854 | None:intergenic | 20.0% |
!!! | AGGTTATATATTGATTACTA+CGG | + | chr6.3:79177288-79177307 | MS.gene63450:intron | 20.0% |
! | TATTTAGTGTATGTTTGGTT+TGG | - | chr6.3:79178060-79178079 | None:intergenic | 25.0% |
!! | TGTGAGAAAACAATTTTTCA+AGG | - | chr6.3:79178106-79178125 | None:intergenic | 25.0% |
!!! | AGTAACTTTTGGAAATTGTT+TGG | - | chr6.3:79178383-79178402 | None:intergenic | 25.0% |
!!! | TGCTTATTTTCACATTAGTT+TGG | - | chr6.3:79178439-79178458 | None:intergenic | 25.0% |
AACAAAAACTCACGATTACA+TGG | + | chr6.3:79177958-79177977 | MS.gene63450:intron | 30.0% | |
ATAGTTTACCTTCATGATCT+TGG | - | chr6.3:79178352-79178371 | None:intergenic | 30.0% | |
CTAATGAACCTTAAACTTGT+AGG | + | chr6.3:79178158-79178177 | MS.gene63450:intron | 30.0% | |
CTGTAAAACTGAAGTTAATC+AGG | + | chr6.3:79177886-79177905 | MS.gene63450:intron | 30.0% | |
GACAGAATCGTAATAAAAGA+TGG | - | chr6.3:79177726-79177745 | None:intergenic | 30.0% | |
GATTACATCCTACAAGTTTA+AGG | - | chr6.3:79178169-79178188 | None:intergenic | 30.0% | |
TTAGAAAGAATAACTGGCAA+AGG | - | chr6.3:79177698-79177717 | None:intergenic | 30.0% | |
! | TCTGTGTATATAGGTGTTTT+TGG | + | chr6.3:79178552-79178571 | MS.gene63450:intron | 30.0% |
! | TCTTGTGTTTCTGTGTATAT+AGG | + | chr6.3:79178543-79178562 | MS.gene63450:intron | 30.0% |
!! | CAGTATTGTTTTTCTCCTTT+GGG | - | chr6.3:79178579-79178598 | None:intergenic | 30.0% |
!! | TCAGTATTGTTTTTCTCCTT+TGG | - | chr6.3:79178580-79178599 | None:intergenic | 30.0% |
!!! | TGTTTTCAATTTGTTGTTGC+AGG | + | chr6.3:79177371-79177390 | MS.gene63450:intron | 30.0% |
!!! | TTCAAGCTTTGAGTAACTTT+TGG | - | chr6.3:79178394-79178413 | None:intergenic | 30.0% |
AAGAAAATCAGCAAGGACAA+GGG | + | chr6.3:79177230-79177249 | MS.gene63450:CDS | 35.0% | |
CGAGTAGAAGACAAAGAAAT+TGG | - | chr6.3:79177767-79177786 | None:intergenic | 35.0% | |
CGTACTAGATACAGAATTGA+TGG | + | chr6.3:79178324-79178343 | MS.gene63450:CDS | 35.0% | |
GATAAAGAGAAGCTACAAAG+TGG | - | chr6.3:79177989-79178008 | None:intergenic | 35.0% | |
GTCTAAGCATGTGTTTGATT+TGG | + | chr6.3:79177914-79177933 | MS.gene63450:intron | 35.0% | |
GTGCAGTTAGAAAGAATAAC+TGG | - | chr6.3:79177704-79177723 | None:intergenic | 35.0% | |
GTGTAAGGATGTGTTCTTTA+TGG | + | chr6.3:79177465-79177484 | MS.gene63450:intron | 35.0% | |
TACATCAATTCTGCAGTGTA+AGG | + | chr6.3:79177450-79177469 | MS.gene63450:intron | 35.0% | |
TGGCTGTAGATAACAGAAAA+CGG | - | chr6.3:79177535-79177554 | None:intergenic | 35.0% | |
TTCAAGGAAGAAAATCAGCA+AGG | + | chr6.3:79177223-79177242 | MS.gene63450:CDS | 35.0% | |
! | AAACGTTTTCTGCAGTTTAC+AGG | + | chr6.3:79178611-79178630 | MS.gene63450:CDS | 35.0% |
! | ACTATTGTTGTTGCTGTGAT+TGG | + | chr6.3:79177311-79177330 | MS.gene63450:intron | 35.0% |
! | ATTCTGTTTTGCAATCTCCT+TGG | + | chr6.3:79177815-79177834 | MS.gene63450:intron | 35.0% |
AAATTCACGTCAAGCTCGTT+AGG | + | chr6.3:79177626-79177645 | MS.gene63450:CDS | 40.0% | |
AACTGAAGTTAATCAGGCTG+CGG | + | chr6.3:79177892-79177911 | MS.gene63450:intron | 40.0% | |
AATTCACGTCAAGCTCGTTA+GGG | + | chr6.3:79177627-79177646 | MS.gene63450:CDS | 40.0% | |
ACTGAATTTGAGGAGTCAGT+TGG | + | chr6.3:79177263-79177282 | MS.gene63450:CDS | 40.0% | |
CAGTTTACAGGAAACTCTCA+GGG | + | chr6.3:79178623-79178642 | MS.gene63450:CDS | 40.0% | |
GAAGAAAATCAGCAAGGACA+AGG | + | chr6.3:79177229-79177248 | MS.gene63450:CDS | 40.0% | |
GAGCTTGAGAAGAAATTCAG+CGG | + | chr6.3:79177649-79177668 | MS.gene63450:CDS | 40.0% | |
GGTTTCCAGAAACATCAACT+TGG | - | chr6.3:79177555-79177574 | None:intergenic | 40.0% | |
TGAGAAGAAATTCAGCGGAA+AGG | + | chr6.3:79177654-79177673 | MS.gene63450:CDS | 40.0% | |
TGTTACCTGCTGAGATTGTT+GGG | + | chr6.3:79178298-79178317 | MS.gene63450:CDS | 40.0% | |
! | ACTGACTCCTCAAATTCAGT+AGG | - | chr6.3:79177263-79177282 | None:intergenic | 40.0% |
! | TGATGGATCCAAGATCATGA+AGG | + | chr6.3:79178341-79178360 | MS.gene63450:CDS | 40.0% |
!! | TACAGCCAAGTTGATGTTTC+TGG | + | chr6.3:79177547-79177566 | MS.gene63450:intron | 40.0% |
!! | TCAGATCACTTTTGAGCTCA+TGG | - | chr6.3:79177422-79177441 | None:intergenic | 40.0% |
!!! | ATAGGTGTTTTTGGACCCAA+AGG | + | chr6.3:79178561-79178580 | MS.gene63450:intron | 40.0% |
AACCCCTTCCTCAATCTGTA+GGG | - | chr6.3:79177601-79177620 | None:intergenic | 45.0% | |
ATCCCCTACAGATTGAGGAA+GGG | + | chr6.3:79177595-79177614 | MS.gene63450:CDS | 45.0% | |
ATGCCTTGTAATCATGCGAG+TGG | + | chr6.3:79178021-79178040 | MS.gene63450:intron | 45.0% | |
ATGTAATCCTCATTGCCACC+AGG | + | chr6.3:79178181-79178200 | MS.gene63450:CDS | 45.0% | |
ATTTGAGGAGTCAGTTGGAC+AGG | + | chr6.3:79177268-79177287 | MS.gene63450:CDS | 45.0% | |
GCAGTTTACAGGAAACTCTC+AGG | + | chr6.3:79178622-79178641 | MS.gene63450:CDS | 45.0% | |
GTGTTACCTGCTGAGATTGT+TGG | + | chr6.3:79178297-79178316 | MS.gene63450:CDS | 45.0% | |
GTTTGAGTACCCTGTTACTG+AGG | + | chr6.3:79178657-79178676 | MS.gene63450:CDS | 45.0% | |
TATCCCCTACAGATTGAGGA+AGG | + | chr6.3:79177594-79177613 | MS.gene63450:CDS | 45.0% | |
TATGGATAACCACAGCCTTG+CGG | - | chr6.3:79177576-79177595 | None:intergenic | 45.0% | |
TCCATATCCCCTACAGATTG+AGG | + | chr6.3:79177590-79177609 | MS.gene63450:CDS | 45.0% | |
TCCTCAATCTGTAGGGGATA+TGG | - | chr6.3:79177594-79177613 | None:intergenic | 45.0% | |
TTGCCACTCGCATGATTACA+AGG | - | chr6.3:79178027-79178046 | None:intergenic | 45.0% | |
! | CGAGCTTGACGTGAATTTTG+CGG | - | chr6.3:79177624-79177643 | None:intergenic | 45.0% |
!! | GTTGCAGGCTTTGTTTGATC+TGG | + | chr6.3:79177386-79177405 | MS.gene63450:intron | 45.0% |
!! | TGATGTTTCTGGAAACCGCA+AGG | + | chr6.3:79177558-79177577 | MS.gene63450:CDS | 45.0% |
ACCCCTTCCTCAATCTGTAG+GGG | - | chr6.3:79177600-79177619 | None:intergenic | 50.0% | |
ATCGTCAGGCCACCAAAGAA+AGG | + | chr6.3:79178207-79178226 | MS.gene63450:CDS | 50.0% | |
CGCTGAGCCTACTGAATTTG+AGG | + | chr6.3:79177253-79177272 | MS.gene63450:CDS | 50.0% | |
CGTTTCCCAACAATCTCAGC+AGG | - | chr6.3:79178306-79178325 | None:intergenic | 50.0% | |
GAACCCCTTCCTCAATCTGT+AGG | - | chr6.3:79177602-79177621 | None:intergenic | 50.0% | |
TCCCCTACAGATTGAGGAAG+GGG | + | chr6.3:79177596-79177615 | MS.gene63450:CDS | 50.0% | |
CGATTCTCCTGGTGGCAATG+AGG | - | chr6.3:79178191-79178210 | None:intergenic | 55.0% | |
CGTGGACAGCAGTGAGTGTA+CGG | - | chr6.3:79178257-79178276 | None:intergenic | 55.0% | |
TACACTCACTGCTGTCCACG+AGG | + | chr6.3:79178257-79178276 | MS.gene63450:CDS | 55.0% | |
TGAGCAGCGGAGCCTTTCTT+TGG | - | chr6.3:79178222-79178241 | None:intergenic | 55.0% | |
TTGCCACCAGGAGAATCGTC+AGG | + | chr6.3:79178193-79178212 | MS.gene63450:CDS | 55.0% | |
! | TTCTGGAAACCGCAAGGCTG+TGG | + | chr6.3:79177564-79177583 | MS.gene63450:CDS | 55.0% |
GCAGCGGAGCCTTTCTTTGG+TGG | - | chr6.3:79178219-79178238 | None:intergenic | 60.0% | |
TGGCCTGACGATTCTCCTGG+TGG | - | chr6.3:79178199-79178218 | None:intergenic | 60.0% | |
TGGTGGCCTGACGATTCTCC+TGG | - | chr6.3:79178202-79178221 | None:intergenic | 60.0% | |
TGTCCACGAGGCAATGCTCG+AGG | + | chr6.3:79178269-79178288 | MS.gene63450:CDS | 60.0% | |
! | CATCCTCGAGCATTGCCTCG+TGG | - | chr6.3:79178275-79178294 | None:intergenic | 60.0% |
GCAGTGAGTGTACGGCTGCG+TGG | - | chr6.3:79178249-79178268 | None:intergenic | 65.0% | |
GCTGCGTGGACGCTGAGCAG+CGG | - | chr6.3:79178235-79178254 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 79177215 | 79178684 | 79177215 | ID=MS.gene63450 |
chr6.3 | mRNA | 79177215 | 79178684 | 79177215 | ID=MS.gene63450.t1;Parent=MS.gene63450 |
chr6.3 | exon | 79177215 | 79177289 | 79177215 | ID=MS.gene63450.t1.exon1;Parent=MS.gene63450.t1 |
chr6.3 | CDS | 79177215 | 79177289 | 79177215 | ID=cds.MS.gene63450.t1;Parent=MS.gene63450.t1 |
chr6.3 | exon | 79177393 | 79177466 | 79177393 | ID=MS.gene63450.t1.exon2;Parent=MS.gene63450.t1 |
chr6.3 | CDS | 79177393 | 79177466 | 79177393 | ID=cds.MS.gene63450.t1;Parent=MS.gene63450.t1 |
chr6.3 | exon | 79177552 | 79177675 | 79177552 | ID=MS.gene63450.t1.exon3;Parent=MS.gene63450.t1 |
chr6.3 | CDS | 79177552 | 79177675 | 79177552 | ID=cds.MS.gene63450.t1;Parent=MS.gene63450.t1 |
chr6.3 | exon | 79178180 | 79178362 | 79178180 | ID=MS.gene63450.t1.exon4;Parent=MS.gene63450.t1 |
chr6.3 | CDS | 79178180 | 79178362 | 79178180 | ID=cds.MS.gene63450.t1;Parent=MS.gene63450.t1 |
chr6.3 | exon | 79178565 | 79178684 | 79178565 | ID=MS.gene63450.t1.exon5;Parent=MS.gene63450.t1 |
chr6.3 | CDS | 79178565 | 79178684 | 79178565 | ID=cds.MS.gene63450.t1;Parent=MS.gene63450.t1 |
Gene Sequence |
Protein sequence |