Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64013.t1 | XP_003589483.1 | 100 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 1.60E-72 | 282 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64013.t1 | Q84WL9 | 94.4 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 2.2e-70 | 266.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64013.t1 | B7FMB2 | 100.0 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 1.1e-72 | 282.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64013 | MS.gene073113 | PPI |
| MS.gene021005 | MS.gene64013 | PPI |
| MS.gene75781 | MS.gene64013 | PPI |
| MS.gene91504 | MS.gene64013 | PPI |
| MS.gene061903 | MS.gene64013 | PPI |
| MS.gene049041 | MS.gene64013 | PPI |
| MS.gene06157 | MS.gene64013 | PPI |
| MS.gene35343 | MS.gene64013 | PPI |
| MS.gene20143 | MS.gene64013 | PPI |
| MS.gene64013 | MS.gene06156 | PPI |
| MS.gene64013 | MS.gene015847 | PPI |
| MS.gene94633 | MS.gene64013 | PPI |
| MS.gene09847 | MS.gene64013 | PPI |
| MS.gene017498 | MS.gene64013 | PPI |
| MS.gene64514 | MS.gene64013 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64013.t1 | MTR_1g025190 | 100.000 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 9.54e-102 | 287 |
| MS.gene64013.t1 | MTR_5g098940 | 55.319 | 141 | 63 | 0 | 1 | 141 | 1 | 141 | 2.44e-54 | 168 |
| MS.gene64013.t1 | MTR_5g087820 | 51.773 | 141 | 68 | 0 | 1 | 141 | 25 | 165 | 4.33e-49 | 155 |
| MS.gene64013.t1 | MTR_7g100010 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 2.02e-38 | 127 |
| MS.gene64013.t1 | MTR_8g102180 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 2.02e-38 | 127 |
| MS.gene64013.t1 | MTR_8g077600 | 39.597 | 149 | 81 | 3 | 1 | 142 | 1 | 147 | 4.53e-30 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64013.t1 | AT1G47830 | 94.366 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 2.71e-96 | 273 |
| MS.gene64013.t1 | AT4G35410 | 54.610 | 141 | 64 | 0 | 1 | 141 | 1 | 141 | 1.39e-53 | 166 |
| MS.gene64013.t1 | AT2G17380 | 53.901 | 141 | 65 | 0 | 1 | 141 | 1 | 141 | 1.66e-53 | 166 |
| MS.gene64013.t1 | AT2G19790 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 1.16e-38 | 128 |
| MS.gene64013.t1 | AT4G35410 | 53.061 | 98 | 46 | 0 | 1 | 98 | 1 | 98 | 4.34e-33 | 112 |
| MS.gene64013.t1 | AT3G50860 | 38.776 | 147 | 85 | 1 | 1 | 142 | 1 | 147 | 9.89e-33 | 114 |
| MS.gene64013.t1 | AT3G50860 | 37.931 | 145 | 85 | 1 | 1 | 140 | 1 | 145 | 1.45e-31 | 110 |
Find 29 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACAAAATTAGTGTATT+TGG | 0.060687 | 1.4:+738084 | None:intergenic |
| CCATTTGTTTGTTGAAATCT+TGG | 0.225064 | 1.4:-737123 | MS.gene64013:CDS |
| TTCAAGAGGAACATAGTATT+TGG | 0.241775 | 1.4:+738165 | None:intergenic |
| CAATGTCTGCGAACTTGATT+TGG | 0.278261 | 1.4:-737087 | MS.gene64013:CDS |
| TCAACAAAATTAGTGTATTT+GGG | 0.345238 | 1.4:+738085 | None:intergenic |
| GAATGAATTCATCAAGTATA+AGG | 0.361705 | 1.4:+735891 | None:intergenic |
| GTATTCGACCTTGTGTTTCT+CGG | 0.367660 | 1.4:+738138 | None:intergenic |
| AACATAGTATTTGGCTAAAC+GGG | 0.399817 | 1.4:+738174 | None:intergenic |
| CAGGCTATCATTGAAAGAAT+GGG | 0.419258 | 1.4:-735613 | MS.gene64013:CDS |
| GAACATAGTATTTGGCTAAA+CGG | 0.419670 | 1.4:+738173 | None:intergenic |
| GCAGGCTATCATTGAAAGAA+TGG | 0.433845 | 1.4:-735614 | MS.gene64013:intron |
| CCAAGATTTCAACAAACAAA+TGG | 0.450421 | 1.4:+737123 | None:intergenic |
| GTAATATACCGGAGATATGC+TGG | 0.461155 | 1.4:-737206 | MS.gene64013:CDS |
| CATTCTGTTGCAGAACAGAC+AGG | 0.470525 | 1.4:-738203 | MS.gene64013:CDS |
| CTTGATGAATTCATTCTAGC+GGG | 0.516282 | 1.4:-735884 | MS.gene64013:CDS |
| TGTTCTGCAACAGAATGAAT+CGG | 0.534099 | 1.4:+738209 | None:intergenic |
| AAAACAGTCCAGCATATCTC+CGG | 0.546650 | 1.4:+737198 | None:intergenic |
| TGTTTCTCGGAATCTTCAAG+AGG | 0.587461 | 1.4:+738151 | None:intergenic |
| ACTTGATGAATTCATTCTAG+CGG | 0.603094 | 1.4:-735885 | MS.gene64013:CDS |
| GTACACACAAGGTAATATAC+CGG | 0.616996 | 1.4:-737217 | MS.gene64013:CDS |
| GAAACACAAGGTCGAATACG+AGG | 0.625603 | 1.4:-738134 | MS.gene64013:CDS |
| ACTGCAAGAAACAAGCAAGA+AGG | 0.630829 | 1.4:-735858 | MS.gene64013:intron |
| TGGGATCTCTATTTACGACA+AGG | 0.631018 | 1.4:+738104 | None:intergenic |
| GTTGCAGTTTCGTACACACA+AGG | 0.632236 | 1.4:-737228 | MS.gene64013:intron |
| AGGCTATCATTGAAAGAATG+GGG | 0.635618 | 1.4:-735612 | MS.gene64013:CDS |
| ATTCTGTTGCAGAACAGACA+GGG | 0.638809 | 1.4:-738202 | MS.gene64013:CDS |
| TGACATCACTGATAATGAGT+TGG | 0.649266 | 1.4:-737162 | MS.gene64013:CDS |
| TGAAGATTCCGAGAAACACA+AGG | 0.650445 | 1.4:-738146 | MS.gene64013:CDS |
| GGCTATCATTGAAAGAATGG+GGG | 0.667109 | 1.4:-735611 | MS.gene64013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATATGCATTATTTA+TGG | + | chr1.4:735855-735874 | None:intergenic | 15.0% |
| !! | TTAAATAATAACCGTTTAAT+GGG | - | chr1.4:736638-736657 | MS.gene64013:intron | 15.0% |
| !! | TTTATGATACAAAATAATAG+TGG | - | chr1.4:737065-737084 | MS.gene64013:intron | 15.0% |
| !!! | AAATAATAGTGGAATATAAA+AGG | - | chr1.4:737076-737095 | MS.gene64013:CDS | 15.0% |
| !!! | AATAATAGTGGAATATAAAA+GGG | - | chr1.4:737077-737096 | MS.gene64013:CDS | 15.0% |
| !! | AAGTTATTCTATGCATTATT+AGG | - | chr1.4:737585-737604 | MS.gene64013:intron | 20.0% |
| !! | GTTAAATAATAACCGTTTAA+TGG | - | chr1.4:736637-736656 | MS.gene64013:intron | 20.0% |
| !! | TCAACAAAATTAGTGTATTT+GGG | + | chr1.4:735815-735834 | None:intergenic | 20.0% |
| !!! | AAGGACATTTTTCATATATA+TGG | + | chr1.4:737502-737521 | None:intergenic | 20.0% |
| !!! | ATAAATTAATTTCCCCTTTT+TGG | - | chr1.4:735636-735655 | MS.gene64013:intron | 20.0% |
| !!! | TTTAGTTTTATCTGATTTGA+AGG | - | chr1.4:737979-737998 | MS.gene64013:intron | 20.0% |
| !!! | TTTTTTAGAACTAAAACATG+TGG | + | chr1.4:737303-737322 | None:intergenic | 20.0% |
| ! | AAAAATTTGTACACACAACA+AGG | + | chr1.4:737557-737576 | None:intergenic | 25.0% |
| ! | AACAAATGTTACCCATTAAA+CGG | + | chr1.4:736652-736671 | None:intergenic | 25.0% |
| ! | ATTTATAGAAAACGATGTCT+CGG | - | chr1.4:737023-737042 | MS.gene64013:intron | 25.0% |
| ! | CATGATTACTGAAAAACAAA+AGG | + | chr1.4:736875-736894 | None:intergenic | 25.0% |
| ! | CTCAACAAAATTAGTGTATT+TGG | + | chr1.4:735816-735835 | None:intergenic | 25.0% |
| ! | GAATGAATTCATCAAGTATA+AGG | + | chr1.4:738009-738028 | None:intergenic | 25.0% |
| ! | GCAATTGCAAATTATTTACT+AGG | + | chr1.4:737467-737486 | None:intergenic | 25.0% |
| ! | GTATGTTAAATTAGACACAA+TGG | + | chr1.4:737788-737807 | None:intergenic | 25.0% |
| ! | GTTATCTATCTTTGTATTGT+TGG | - | chr1.4:736951-736970 | MS.gene64013:intron | 25.0% |
| ! | TAATGAGTTCGATACAAATA+TGG | - | chr1.4:735905-735924 | MS.gene64013:intron | 25.0% |
| ! | TGCTTAGATATTCAAAACAT+TGG | - | chr1.4:736916-736935 | MS.gene64013:intron | 25.0% |
| ! | TTTAGATCAAAGTGGAAAAT+GGG | + | chr1.4:737339-737358 | None:intergenic | 25.0% |
| !! | AGATTTTCAACCAATTAACT+AGG | + | chr1.4:736349-736368 | None:intergenic | 25.0% |
| !! | CAAATACACTAATTTTGTTG+AGG | - | chr1.4:735814-735833 | MS.gene64013:intron | 25.0% |
| !!! | TCACTTCTTTCATTTGTTTT+TGG | - | chr1.4:737706-737725 | MS.gene64013:intron | 25.0% |
| !!! | TGTTTTTCAGTAATCATGTA+GGG | - | chr1.4:736877-736896 | MS.gene64013:intron | 25.0% |
| !!! | TTGTTTTTCAGTAATCATGT+AGG | - | chr1.4:736876-736895 | MS.gene64013:intron | 25.0% |
| AAATTACTGTTCACAGATGA+TGG | + | chr1.4:736510-736529 | None:intergenic | 30.0% | |
| AAATTAGTCCCTAACTTTGT+AGG | + | chr1.4:736081-736100 | None:intergenic | 30.0% | |
| AACATAGTATTTGGCTAAAC+GGG | + | chr1.4:735726-735745 | None:intergenic | 30.0% | |
| AATATAAAAGGGTAGATGGA+TGG | - | chr1.4:737088-737107 | MS.gene64013:CDS | 30.0% | |
| AATTACTGTTCACAGATGAT+GGG | + | chr1.4:736509-736528 | None:intergenic | 30.0% | |
| AATTAGTCCCTAACTTTGTA+GGG | + | chr1.4:736080-736099 | None:intergenic | 30.0% | |
| ACAATTTATCCCACTAAATG+GGG | + | chr1.4:735978-735997 | None:intergenic | 30.0% | |
| ACTTGATGAATTCATTCTAG+CGG | - | chr1.4:738012-738031 | MS.gene64013:intron | 30.0% | |
| ATATAAAAGGGTAGATGGAT+GGG | - | chr1.4:737089-737108 | MS.gene64013:CDS | 30.0% | |
| CAGATAAAACTAAATGAGCA+AGG | + | chr1.4:737973-737992 | None:intergenic | 30.0% | |
| CATAGGTACCTTATGATTTA+AGG | - | chr1.4:738124-738143 | MS.gene64013:CDS | 30.0% | |
| CCAAGATTTCAACAAACAAA+TGG | + | chr1.4:736777-736796 | None:intergenic | 30.0% | |
| CTTTAGATCAAAGTGGAAAA+TGG | + | chr1.4:737340-737359 | None:intergenic | 30.0% | |
| GAACATAGTATTTGGCTAAA+CGG | + | chr1.4:735727-735746 | None:intergenic | 30.0% | |
| GAAGTTGGATCTAGTATTTA+CGG | + | chr1.4:737434-737453 | None:intergenic | 30.0% | |
| GACAATTTATCCCACTAAAT+GGG | + | chr1.4:735979-735998 | None:intergenic | 30.0% | |
| GCAAAAGTTGAAATACATGA+TGG | - | chr1.4:737181-737200 | MS.gene64013:CDS | 30.0% | |
| GGTAATGCTATGATGATATT+GGG | - | chr1.4:736972-736991 | MS.gene64013:intron | 30.0% | |
| GTGTCTAATTTAACATACAG+CGG | - | chr1.4:737790-737809 | MS.gene64013:intron | 30.0% | |
| TACAAAGTTAGGGACTAATT+TGG | - | chr1.4:736080-736099 | MS.gene64013:intron | 30.0% | |
| TATATGAAAAATGTCCTTGC+AGG | - | chr1.4:737504-737523 | MS.gene64013:intron | 30.0% | |
| TGACAAAATAACAAACCTTG+TGG | + | chr1.4:736846-736865 | None:intergenic | 30.0% | |
| TGTGAACAGTAATTTATCTG+TGG | - | chr1.4:736515-736534 | MS.gene64013:intron | 30.0% | |
| TTAGATCAAAGTGGAAAATG+GGG | + | chr1.4:737338-737357 | None:intergenic | 30.0% | |
| TTCAAGAGGAACATAGTATT+TGG | + | chr1.4:735735-735754 | None:intergenic | 30.0% | |
| TTCATATATATGGCAGCAAA+TGG | + | chr1.4:737492-737511 | None:intergenic | 30.0% | |
| TTGAAGGATTCCAAGTTAAT+TGG | - | chr1.4:736170-736189 | MS.gene64013:intron | 30.0% | |
| ! | AACACAAAACAGGTTAGTTA+AGG | + | chr1.4:738262-738281 | None:intergenic | 30.0% |
| ! | ACACTAATTTTGTTGAGGTA+TGG | - | chr1.4:735819-735838 | MS.gene64013:intron | 30.0% |
| ! | CAGAATTAAATTTTCCTGCA+AGG | + | chr1.4:737521-737540 | None:intergenic | 30.0% |
| ! | CCATTTGTTTGTTGAAATCT+TGG | - | chr1.4:736774-736793 | MS.gene64013:intron | 30.0% |
| ! | GAAGCTGTAGTTCTATATAT+TGG | - | chr1.4:736595-736614 | MS.gene64013:intron | 30.0% |
| ! | TGGTAATGCTATGATGATAT+TGG | - | chr1.4:736971-736990 | MS.gene64013:intron | 30.0% |
| ! | TTAATTTCCCCTTTTTGGAT+TGG | - | chr1.4:735641-735660 | MS.gene64013:intron | 30.0% |
| !! | GTTTTTCAGTAATCATGTAG+GGG | - | chr1.4:736878-736897 | MS.gene64013:intron | 30.0% |
| !!! | GAAGAATCTGAGTGTTTTTT+AGG | - | chr1.4:737129-737148 | MS.gene64013:CDS | 30.0% |
| !!! | TTTGGTTTTTAACTTCCACA+AGG | - | chr1.4:736828-736847 | MS.gene64013:intron | 30.0% |
| AAACACGATCCAATCCAAAA+AGG | + | chr1.4:735653-735672 | None:intergenic | 35.0% | |
| AAAGTTAGGGACTAATTTGG+TGG | - | chr1.4:736083-736102 | MS.gene64013:intron | 35.0% | |
| AACACGATCCAATCCAAAAA+GGG | + | chr1.4:735652-735671 | None:intergenic | 35.0% | |
| AAGTGAGAATAAGGTTGCTT+TGG | + | chr1.4:737651-737670 | None:intergenic | 35.0% | |
| AATGAAGTTTGTGATTGCTG+AGG | - | chr1.4:737869-737888 | MS.gene64013:intron | 35.0% | |
| ACGTGAAAATGACTGTTTGA+AGG | - | chr1.4:736154-736173 | MS.gene64013:intron | 35.0% | |
| AGGATTCCAAGTTAATTGGT+TGG | - | chr1.4:736174-736193 | MS.gene64013:intron | 35.0% | |
| AGGCTATCATTGAAAGAATG+GGG | - | chr1.4:738285-738304 | MS.gene64013:intron | 35.0% | |
| AGGTCTAAGAAGGCAAAAAA+AGG | + | chr1.4:736253-736272 | None:intergenic | 35.0% | |
| ATAAAGGACATTCAAGGTCT+TGG | + | chr1.4:736295-736314 | None:intergenic | 35.0% | |
| ATGAAGTTTGTGATTGCTGA+GGG | - | chr1.4:737870-737889 | MS.gene64013:intron | 35.0% | |
| ATTTCATCCCAAAAGCTTCA+CGG | + | chr1.4:736374-736393 | None:intergenic | 35.0% | |
| CAATTAACTAGGACCTTTCA+AGG | + | chr1.4:736338-736357 | None:intergenic | 35.0% | |
| CAGCAATCACAAACTTCATT+TGG | + | chr1.4:737869-737888 | None:intergenic | 35.0% | |
| CAGGCTATCATTGAAAGAAT+GGG | - | chr1.4:738284-738303 | MS.gene64013:intron | 35.0% | |
| CAGTTAGGCCTTAAATCATA+AGG | + | chr1.4:738135-738154 | None:intergenic | 35.0% | |
| CGACAATTTATCCCACTAAA+TGG | + | chr1.4:735980-735999 | None:intergenic | 35.0% | |
| CTCGGAAATCGAGATAAATT+AGG | - | chr1.4:737041-737060 | MS.gene64013:intron | 35.0% | |
| CTTGAAAGGTCCTAGTTAAT+TGG | - | chr1.4:736336-736355 | MS.gene64013:intron | 35.0% | |
| CTTGATGAATTCATTCTAGC+GGG | - | chr1.4:738013-738032 | MS.gene64013:intron | 35.0% | |
| GGTGTCAGAATTAGAATTAG+CGG | - | chr1.4:737219-737238 | MS.gene64013:CDS | 35.0% | |
| GTACACACAAGGTAATATAC+CGG | - | chr1.4:736680-736699 | MS.gene64013:intron | 35.0% | |
| GTGGAATATAAAAGGGTAGA+TGG | - | chr1.4:737084-737103 | MS.gene64013:CDS | 35.0% | |
| GTGTCAGAATTAGAATTAGC+GGG | - | chr1.4:737220-737239 | MS.gene64013:CDS | 35.0% | |
| TAGACTCACTATTCAACTGT+AGG | - | chr1.4:737268-737287 | MS.gene64013:intron | 35.0% | |
| TCGATTTCCTTTGCTTCTTT+GGG | - | chr1.4:738155-738174 | MS.gene64013:CDS | 35.0% | |
| TGATGGGAAAATCAAACATG+AGG | + | chr1.4:736493-736512 | None:intergenic | 35.0% | |
| TGCTCAATTAGAAACTCAAC+AGG | + | chr1.4:737746-737765 | None:intergenic | 35.0% | |
| TGTCAGAATTAGAATTAGCG+GGG | - | chr1.4:737221-737240 | MS.gene64013:CDS | 35.0% | |
| TGTTCTCCAACCAATTAACT+TGG | + | chr1.4:736183-736202 | None:intergenic | 35.0% | |
| TGTTCTGCAACAGAATGAAT+CGG | + | chr1.4:735691-735710 | None:intergenic | 35.0% | |
| TTAGACCTTACTGTTGTCAT+TGG | - | chr1.4:736265-736284 | MS.gene64013:intron | 35.0% | |
| ! | AAATCTATCCGTGAAGCTTT+TGG | - | chr1.4:736363-736382 | MS.gene64013:intron | 35.0% |
| ! | AATCTATCCGTGAAGCTTTT+GGG | - | chr1.4:736364-736383 | MS.gene64013:intron | 35.0% |
| ! | ACAGGTTAGTTAAGGAATTG+TGG | + | chr1.4:738254-738273 | None:intergenic | 35.0% |
| ! | GACATGTGATTGCTAGTTTA+AGG | - | chr1.4:738092-738111 | MS.gene64013:CDS | 35.0% |
| ! | TGACATCACTGATAATGAGT+TGG | - | chr1.4:736735-736754 | MS.gene64013:intron | 35.0% |
| !! | AAGGTTGCTTTGGATCTTTT+GGG | + | chr1.4:737641-737660 | None:intergenic | 35.0% |
| !! | AGTCATTTTCACGTGTGATA+TGG | + | chr1.4:736148-736167 | None:intergenic | 35.0% |
| !! | GTCATTTTCACGTGTGATAT+GGG | + | chr1.4:736147-736166 | None:intergenic | 35.0% |
| !! | TAAGGTTGCTTTGGATCTTT+TGG | + | chr1.4:737642-737661 | None:intergenic | 35.0% |
| !!! | AGCATTCTGCTGTTTTAAAG+TGG | - | chr1.4:736570-736589 | MS.gene64013:intron | 35.0% |
| AAAACAGTCCAGCATATCTC+CGG | + | chr1.4:736702-736721 | None:intergenic | 40.0% | |
| AAATGTGCCCAAAGAAGCAA+AGG | + | chr1.4:738165-738184 | None:intergenic | 40.0% | |
| ACACGATCCAATCCAAAAAG+GGG | + | chr1.4:735651-735670 | None:intergenic | 40.0% | |
| ACATGAGGAAGCAAAAGAGA+TGG | + | chr1.4:736478-736497 | None:intergenic | 40.0% | |
| ACGTAGTGAACAGTAAGACT+TGG | + | chr1.4:737832-737851 | None:intergenic | 40.0% | |
| ACTGCAAGAAACAAGCAAGA+AGG | - | chr1.4:738039-738058 | MS.gene64013:intron | 40.0% | |
| AGCAAAGGAAATCGACAGTT+AGG | + | chr1.4:738150-738169 | None:intergenic | 40.0% | |
| ATAGCCTGCAAACACAAAAC+AGG | + | chr1.4:738272-738291 | None:intergenic | 40.0% | |
| ATTCTGTTGCAGAACAGACA+GGG | - | chr1.4:735695-735714 | MS.gene64013:intron | 40.0% | |
| CAATGTCTGCGAACTTGATT+TGG | - | chr1.4:736810-736829 | MS.gene64013:intron | 40.0% | |
| CAGCTACATGGATCAATCAA+AGG | + | chr1.4:735954-735973 | None:intergenic | 40.0% | |
| CATGAGGAAGCAAAAGAGAT+GGG | + | chr1.4:736477-736496 | None:intergenic | 40.0% | |
| CGTAGTGAACAGTAAGACTT+GGG | + | chr1.4:737831-737850 | None:intergenic | 40.0% | |
| CTAGGTCTTCTACAAGAAGT+TGG | + | chr1.4:737449-737468 | None:intergenic | 40.0% | |
| GACAACAGTAAGGTCTAAGA+AGG | + | chr1.4:736263-736282 | None:intergenic | 40.0% | |
| GATCTCCAATGACAACAGTA+AGG | + | chr1.4:736273-736292 | None:intergenic | 40.0% | |
| GATGCACGGTTACTAAACAA+CGG | + | chr1.4:736444-736463 | None:intergenic | 40.0% | |
| GCAGGCTATCATTGAAAGAA+TGG | - | chr1.4:738283-738302 | MS.gene64013:intron | 40.0% | |
| GGCTATCATTGAAAGAATGG+GGG | - | chr1.4:738286-738305 | MS.gene64013:intron | 40.0% | |
| GTAATATACCGGAGATATGC+TGG | - | chr1.4:736691-736710 | MS.gene64013:intron | 40.0% | |
| GTATTCGACCTTGTGTTTCT+CGG | + | chr1.4:735762-735781 | None:intergenic | 40.0% | |
| TCTGTTCTCTAACTCCTAGA+AGG | + | chr1.4:736013-736032 | None:intergenic | 40.0% | |
| TGAAGATTCCGAGAAACACA+AGG | - | chr1.4:735751-735770 | MS.gene64013:intron | 40.0% | |
| TGGGAGAAAAAACTGATGCA+CGG | + | chr1.4:736458-736477 | None:intergenic | 40.0% | |
| TGGGATCTCTATTTACGACA+AGG | + | chr1.4:735796-735815 | None:intergenic | 40.0% | |
| TGTTTCTCGGAATCTTCAAG+AGG | + | chr1.4:735749-735768 | None:intergenic | 40.0% | |
| TTCTCTGCTTACGACAATTG+CGG | - | chr1.4:738183-738202 | MS.gene64013:CDS | 40.0% | |
| ! | AGAGCTAAATCACGTTTTGC+TGG | - | chr1.4:736209-736228 | MS.gene64013:intron | 40.0% |
| ! | CTAACCTGTTTTGTGTTTGC+AGG | - | chr1.4:738265-738284 | MS.gene64013:intron | 40.0% |
| ! | GGAAGCATAAAGGACATTCA+AGG | + | chr1.4:736301-736320 | None:intergenic | 40.0% |
| ! | GTCGATTTCCTTTGCTTCTT+TGG | - | chr1.4:738154-738173 | MS.gene64013:CDS | 40.0% |
| !! | AGGTTGCTTTGGATCTTTTG+GGG | + | chr1.4:737640-737659 | None:intergenic | 40.0% |
| !! | ATACTCTAGCTCTCTGTTAC+TGG | + | chr1.4:737678-737697 | None:intergenic | 40.0% |
| !! | GATGCTGCTTTAGATCAAAG+TGG | + | chr1.4:737347-737366 | None:intergenic | 40.0% |
| ACTAAATGGGGTCAGCTACA+TGG | + | chr1.4:735966-735985 | None:intergenic | 45.0% | |
| ACTGGAGCGAAGTGAGAATA+AGG | + | chr1.4:737660-737679 | None:intergenic | 45.0% | |
| AGGACCTTTCAAGGAAAACG+CGG | + | chr1.4:736329-736348 | None:intergenic | 45.0% | |
| AGTTTGTGATTGCTGAGGGT+TGG | - | chr1.4:737874-737893 | MS.gene64013:intron | 45.0% | |
| ATGTAGCTGACCCCATTTAG+TGG | - | chr1.4:735965-735984 | MS.gene64013:intron | 45.0% | |
| CAAAGTGGAAAATGGGGCAA+AGG | + | chr1.4:737332-737351 | None:intergenic | 45.0% | |
| CATTCTGTTGCAGAACAGAC+AGG | - | chr1.4:735694-735713 | MS.gene64013:intron | 45.0% | |
| GAAACACAAGGTCGAATACG+AGG | - | chr1.4:735763-735782 | MS.gene64013:intron | 45.0% | |
| GTCGTTGTTGTAGTCCTTCT+AGG | - | chr1.4:735996-736015 | MS.gene64013:intron | 45.0% | |
| GTTGCAGTTTCGTACACACA+AGG | - | chr1.4:736669-736688 | MS.gene64013:intron | 45.0% | |
| GTTTGTGATTGCTGAGGGTT+GGG | - | chr1.4:737875-737894 | MS.gene64013:intron | 45.0% | |
| TAAAAGGGTAGATGGATGGG+TGG | - | chr1.4:737092-737111 | MS.gene64013:CDS | 45.0% | |
| TGATGGCACAAAAAGAGCTG+AGG | - | chr1.4:737198-737217 | MS.gene64013:CDS | 45.0% | |
| TGTAGCTGACCCCATTTAGT+GGG | - | chr1.4:735966-735985 | MS.gene64013:intron | 45.0% | |
| ! | GTTTAAGGCTTGAGCTGCAT+AGG | - | chr1.4:738107-738126 | MS.gene64013:CDS | 45.0% |
| !! | GAGAGTGCCCTACAAAGTTA+GGG | - | chr1.4:736070-736089 | MS.gene64013:intron | 45.0% |
| !! | TGAGAGTGCCCTACAAAGTT+AGG | - | chr1.4:736069-736088 | MS.gene64013:intron | 45.0% |
| !! | TGATTTAATATATTATAAAT+TGG | - | chr1.4:737245-737264 | MS.gene64013:intron | 5.0% |
| ACCTTTCAAGGAAAACGCGG+AGG | + | chr1.4:736326-736345 | None:intergenic | 50.0% | |
| CATCAGAAGATGGTCGGATG+TGG | - | chr1.4:737159-737178 | MS.gene64013:CDS | 50.0% | |
| CATCCGACCATCTTCTGATG+TGG | + | chr1.4:737159-737178 | None:intergenic | 50.0% | |
| CCTTTCAAGGAAAACGCGGA+GGG | + | chr1.4:736325-736344 | None:intergenic | 50.0% | |
| GGTAGATGGATGGGTGGATA+TGG | - | chr1.4:737098-737117 | MS.gene64013:CDS | 50.0% | |
| GTGCCACATCAGAAGATGGT+CGG | - | chr1.4:737153-737172 | MS.gene64013:CDS | 50.0% | |
| !! | AGGAGTGCCACATCAGAAGA+TGG | - | chr1.4:737149-737168 | MS.gene64013:CDS | 50.0% |
| GTGATTGCTGAGGGTTGGGT+TGG | - | chr1.4:737879-737898 | MS.gene64013:intron | 55.0% | |
| TTCAAGGAAAACGCGGAGGG+AGG | + | chr1.4:736322-736341 | None:intergenic | 55.0% | |
| ! | CCCTCCGCGTTTTCCTTGAA+AGG | - | chr1.4:736322-736341 | MS.gene64013:intron | 55.0% |
| ! | CGCGGAGGGAGGAAGCATAA+AGG | + | chr1.4:736311-736330 | None:intergenic | 60.0% |
| !! | TGCTGAGGGTTGGGTTGGAG+TGG | - | chr1.4:737884-737903 | MS.gene64013:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 735591 | 738328 | 735591 | ID=MS.gene64013 |
| chr1.4 | mRNA | 735591 | 738328 | 735591 | ID=MS.gene64013.t1;Parent=MS.gene64013 |
| chr1.4 | exon | 738326 | 738328 | 738326 | ID=MS.gene64013.t1.exon1;Parent=MS.gene64013.t1 |
| chr1.4 | CDS | 738326 | 738328 | 738326 | ID=cds.MS.gene64013.t1;Parent=MS.gene64013.t1 |
| chr1.4 | exon | 738084 | 738233 | 738084 | ID=MS.gene64013.t1.exon2;Parent=MS.gene64013.t1 |
| chr1.4 | CDS | 738084 | 738233 | 738084 | ID=cds.MS.gene64013.t1;Parent=MS.gene64013.t1 |
| chr1.4 | exon | 737070 | 737243 | 737070 | ID=MS.gene64013.t1.exon3;Parent=MS.gene64013.t1 |
| chr1.4 | CDS | 737070 | 737243 | 737070 | ID=cds.MS.gene64013.t1;Parent=MS.gene64013.t1 |
| chr1.4 | exon | 735859 | 735918 | 735859 | ID=MS.gene64013.t1.exon4;Parent=MS.gene64013.t1 |
| chr1.4 | CDS | 735859 | 735918 | 735859 | ID=cds.MS.gene64013.t1;Parent=MS.gene64013.t1 |
| chr1.4 | exon | 735591 | 735632 | 735591 | ID=MS.gene64013.t1.exon5;Parent=MS.gene64013.t1 |
| chr1.4 | CDS | 735591 | 735632 | 735591 | ID=cds.MS.gene64013.t1;Parent=MS.gene64013.t1 |
| Gene Sequence |
| Protein sequence |
