Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64132.t1 | AES98170.2 | 95.1 | 452 | 21 | 1 | 1 | 451 | 1 | 452 | 4.60E-190 | 674.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64132.t1 | Q38813 | 54.2 | 380 | 166 | 3 | 57 | 434 | 30 | 403 | 3.8e-84 | 313.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64132.t1 | G7KBD5 | 95.1 | 452 | 21 | 1 | 1 | 451 | 1 | 452 | 3.3e-190 | 674.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene052188 | MS.gene64132 | PPI |
MS.gene045133 | MS.gene64132 | PPI |
MS.gene74302 | MS.gene64132 | PPI |
MS.gene92849 | MS.gene64132 | PPI |
MS.gene066618 | MS.gene64132 | PPI |
MS.gene99077 | MS.gene64132 | PPI |
MS.gene64132 | MS.gene059290 | PPI |
MS.gene46832 | MS.gene64132 | PPI |
MS.gene35518 | MS.gene64132 | PPI |
MS.gene64132 | MS.gene034372 | PPI |
MS.gene50294 | MS.gene64132 | PPI |
MS.gene64132 | MS.gene75493 | PPI |
MS.gene83734 | MS.gene64132 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64132.t1 | MTR_5g065160 | 96.460 | 452 | 15 | 1 | 1 | 451 | 1 | 452 | 0.0 | 907 |
MS.gene64132.t1 | MTR_5g065160 | 96.444 | 450 | 15 | 1 | 3 | 451 | 10 | 459 | 0.0 | 902 |
MS.gene64132.t1 | MTR_5g065160 | 96.083 | 434 | 16 | 1 | 3 | 435 | 10 | 443 | 0.0 | 865 |
MS.gene64132.t1 | MTR_5g065160 | 95.862 | 435 | 16 | 2 | 3 | 435 | 10 | 444 | 0.0 | 860 |
MS.gene64132.t1 | MTR_4g023470 | 42.938 | 354 | 179 | 6 | 69 | 411 | 80 | 421 | 6.55e-90 | 280 |
MS.gene64132.t1 | MTR_3g027580 | 41.808 | 354 | 194 | 5 | 69 | 418 | 83 | 428 | 1.90e-87 | 274 |
MS.gene64132.t1 | MTR_4g023490 | 34.853 | 373 | 214 | 7 | 68 | 423 | 9 | 369 | 3.55e-65 | 214 |
MS.gene64132.t1 | MTR_3g087030 | 33.693 | 371 | 214 | 9 | 72 | 425 | 79 | 434 | 1.08e-62 | 209 |
MS.gene64132.t1 | MTR_2g104030 | 33.995 | 403 | 242 | 7 | 29 | 415 | 29 | 423 | 2.85e-58 | 199 |
MS.gene64132.t1 | MTR_6g471050 | 31.024 | 332 | 206 | 7 | 101 | 415 | 7 | 332 | 4.57e-41 | 152 |
MS.gene64132.t1 | MTR_8g006430 | 30.278 | 360 | 201 | 15 | 71 | 402 | 10 | 347 | 4.12e-34 | 132 |
MS.gene64132.t1 | MTR_2g087660 | 27.005 | 374 | 230 | 10 | 63 | 412 | 1 | 355 | 6.87e-27 | 112 |
MS.gene64132.t1 | MTR_4g015840 | 28.986 | 345 | 219 | 11 | 75 | 409 | 4 | 332 | 5.21e-26 | 108 |
MS.gene64132.t1 | MTR_4g078850 | 27.809 | 356 | 214 | 12 | 75 | 409 | 4 | 337 | 9.06e-26 | 107 |
MS.gene64132.t1 | MTR_3g108020 | 28.080 | 349 | 210 | 10 | 75 | 412 | 4 | 322 | 1.11e-25 | 107 |
MS.gene64132.t1 | MTR_7g109340 | 28.161 | 348 | 217 | 10 | 67 | 409 | 18 | 337 | 1.44e-25 | 107 |
MS.gene64132.t1 | MTR_2g014470 | 27.195 | 353 | 213 | 11 | 75 | 408 | 4 | 331 | 9.10e-25 | 105 |
MS.gene64132.t1 | MTR_4g050420 | 26.829 | 369 | 235 | 11 | 63 | 412 | 1 | 353 | 6.90e-24 | 103 |
MS.gene64132.t1 | MTR_2g090705 | 27.147 | 361 | 209 | 12 | 75 | 413 | 4 | 332 | 1.01e-22 | 99.0 |
MS.gene64132.t1 | MTR_2g014480 | 27.042 | 355 | 210 | 15 | 75 | 404 | 4 | 334 | 6.76e-22 | 96.7 |
MS.gene64132.t1 | MTR_2g087660 | 27.541 | 305 | 181 | 8 | 63 | 346 | 1 | 286 | 1.54e-21 | 95.5 |
MS.gene64132.t1 | MTR_5g004570 | 34.307 | 137 | 75 | 3 | 73 | 209 | 4 | 125 | 2.48e-13 | 70.1 |
MS.gene64132.t1 | MTR_5g065860 | 46.269 | 67 | 36 | 0 | 71 | 137 | 44 | 110 | 2.59e-13 | 67.8 |
MS.gene64132.t1 | MTR_1g029470 | 48.571 | 70 | 36 | 0 | 73 | 142 | 4 | 73 | 4.31e-13 | 70.9 |
MS.gene64132.t1 | MTR_1g029460 | 47.143 | 70 | 37 | 0 | 73 | 142 | 4 | 73 | 5.79e-12 | 67.8 |
MS.gene64132.t1 | MTR_7g112360 | 43.939 | 66 | 33 | 1 | 76 | 137 | 17 | 82 | 8.14e-12 | 62.4 |
MS.gene64132.t1 | MTR_7g069480 | 52.459 | 61 | 28 | 1 | 77 | 137 | 29 | 88 | 1.21e-11 | 67.0 |
MS.gene64132.t1 | MTR_7g112360 | 43.939 | 66 | 33 | 1 | 76 | 137 | 17 | 82 | 1.38e-11 | 63.2 |
MS.gene64132.t1 | MTR_1g110310 | 49.180 | 61 | 31 | 0 | 77 | 137 | 18 | 78 | 1.41e-11 | 66.6 |
MS.gene64132.t1 | MTR_6g027110 | 42.647 | 68 | 34 | 1 | 75 | 137 | 2 | 69 | 3.38e-11 | 61.6 |
MS.gene64132.t1 | MTR_7g085600 | 36.082 | 97 | 50 | 3 | 75 | 163 | 54 | 146 | 3.43e-11 | 64.3 |
MS.gene64132.t1 | MTR_2g097690 | 49.180 | 61 | 30 | 1 | 77 | 137 | 77 | 136 | 5.29e-11 | 62.4 |
MS.gene64132.t1 | MTR_1g105540 | 34.921 | 126 | 65 | 5 | 54 | 169 | 4 | 122 | 6.81e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64132.t1 | AT1G28210 | 59.288 | 393 | 151 | 3 | 57 | 449 | 30 | 413 | 1.17e-174 | 496 |
MS.gene64132.t1 | AT1G28210 | 60.847 | 378 | 144 | 2 | 57 | 434 | 30 | 403 | 2.41e-173 | 492 |
MS.gene64132.t1 | AT1G28210 | 61.067 | 375 | 142 | 2 | 57 | 431 | 30 | 400 | 7.70e-173 | 491 |
MS.gene64132.t1 | AT5G48030 | 41.144 | 367 | 209 | 4 | 61 | 421 | 80 | 445 | 9.15e-87 | 273 |
MS.gene64132.t1 | AT2G22360 | 32.787 | 366 | 213 | 6 | 68 | 415 | 79 | 429 | 2.77e-60 | 203 |
MS.gene64132.t1 | AT4G39960 | 33.241 | 361 | 225 | 5 | 68 | 415 | 78 | 435 | 2.46e-58 | 198 |
MS.gene64132.t1 | AT4G39960 | 33.241 | 361 | 225 | 5 | 68 | 415 | 78 | 435 | 2.46e-58 | 198 |
MS.gene64132.t1 | AT1G80030 | 32.512 | 406 | 245 | 8 | 57 | 442 | 58 | 454 | 6.50e-55 | 190 |
MS.gene64132.t1 | AT1G80030 | 32.512 | 406 | 245 | 8 | 57 | 442 | 58 | 454 | 9.02e-55 | 190 |
MS.gene64132.t1 | AT1G80030 | 32.512 | 406 | 245 | 8 | 57 | 442 | 58 | 454 | 9.02e-55 | 190 |
MS.gene64132.t1 | AT1G80030 | 32.512 | 406 | 245 | 8 | 57 | 442 | 58 | 454 | 9.02e-55 | 190 |
MS.gene64132.t1 | AT3G17830 | 31.362 | 389 | 240 | 8 | 51 | 414 | 31 | 417 | 9.12e-54 | 188 |
MS.gene64132.t1 | AT1G10350 | 25.905 | 359 | 226 | 13 | 75 | 412 | 4 | 343 | 3.00e-25 | 106 |
MS.gene64132.t1 | AT3G08910 | 28.242 | 347 | 201 | 10 | 75 | 409 | 4 | 314 | 8.02e-25 | 104 |
MS.gene64132.t1 | AT3G62600 | 26.810 | 373 | 210 | 13 | 63 | 413 | 12 | 343 | 1.03e-24 | 105 |
MS.gene64132.t1 | AT2G20560 | 28.045 | 353 | 210 | 11 | 75 | 409 | 4 | 330 | 1.58e-24 | 104 |
MS.gene64132.t1 | AT5G25530 | 27.143 | 350 | 224 | 10 | 75 | 412 | 4 | 334 | 5.13e-24 | 102 |
MS.gene64132.t1 | AT5G22060 | 26.703 | 367 | 224 | 12 | 71 | 412 | 10 | 356 | 1.45e-23 | 102 |
MS.gene64132.t1 | AT5G01390 | 26.503 | 366 | 196 | 11 | 75 | 409 | 4 | 327 | 5.68e-23 | 99.8 |
MS.gene64132.t1 | AT3G44110 | 26.575 | 365 | 226 | 11 | 71 | 412 | 10 | 355 | 4.87e-22 | 98.2 |
MS.gene64132.t1 | AT1G59725 | 24.090 | 357 | 217 | 10 | 75 | 412 | 4 | 325 | 7.76e-22 | 96.7 |
MS.gene64132.t1 | AT5G25530 | 26.536 | 358 | 224 | 11 | 75 | 412 | 4 | 342 | 1.47e-21 | 95.9 |
MS.gene64132.t1 | AT3G44110 | 26.426 | 333 | 203 | 11 | 71 | 380 | 10 | 323 | 3.68e-17 | 82.8 |
MS.gene64132.t1 | AT1G71000 | 48.529 | 68 | 31 | 1 | 74 | 137 | 7 | 74 | 4.38e-15 | 73.2 |
MS.gene64132.t1 | AT1G71000 | 48.529 | 68 | 31 | 1 | 74 | 137 | 7 | 74 | 8.80e-15 | 72.4 |
MS.gene64132.t1 | AT1G56300 | 44.444 | 72 | 36 | 1 | 70 | 137 | 8 | 79 | 8.19e-14 | 68.2 |
MS.gene64132.t1 | AT2G21510 | 39.130 | 115 | 56 | 2 | 73 | 187 | 4 | 104 | 3.81e-13 | 70.9 |
MS.gene64132.t1 | AT2G21510 | 39.130 | 115 | 56 | 2 | 73 | 187 | 4 | 104 | 3.81e-13 | 70.9 |
MS.gene64132.t1 | AT2G21510 | 39.130 | 115 | 56 | 2 | 73 | 187 | 4 | 104 | 4.30e-13 | 70.5 |
MS.gene64132.t1 | AT2G21510 | 39.655 | 116 | 54 | 3 | 73 | 187 | 4 | 104 | 5.25e-13 | 70.5 |
MS.gene64132.t1 | AT2G21510 | 39.655 | 116 | 54 | 3 | 73 | 187 | 4 | 104 | 5.25e-13 | 70.5 |
MS.gene64132.t1 | AT2G33735 | 44.776 | 67 | 37 | 0 | 74 | 140 | 21 | 87 | 7.52e-13 | 65.5 |
MS.gene64132.t1 | AT2G33735 | 44.776 | 67 | 37 | 0 | 74 | 140 | 21 | 87 | 7.52e-13 | 65.5 |
MS.gene64132.t1 | AT3G12170 | 36.975 | 119 | 63 | 3 | 71 | 189 | 7 | 113 | 9.52e-13 | 68.6 |
MS.gene64132.t1 | AT5G18140 | 43.038 | 79 | 41 | 2 | 63 | 138 | 62 | 139 | 1.02e-12 | 69.3 |
MS.gene64132.t1 | AT3G12170 | 36.975 | 119 | 63 | 3 | 71 | 189 | 43 | 149 | 1.56e-12 | 68.6 |
MS.gene64132.t1 | AT1G56300 | 44.444 | 72 | 36 | 1 | 70 | 137 | 8 | 79 | 1.68e-12 | 65.5 |
MS.gene64132.t1 | AT4G28480 | 45.714 | 70 | 37 | 1 | 75 | 143 | 4 | 73 | 2.69e-12 | 67.8 |
MS.gene64132.t1 | AT2G41000 | 41.573 | 89 | 40 | 2 | 75 | 151 | 3 | 91 | 3.61e-12 | 65.9 |
MS.gene64132.t1 | AT4G39150 | 39.394 | 99 | 57 | 1 | 73 | 171 | 4 | 99 | 3.71e-12 | 67.8 |
MS.gene64132.t1 | AT4G39150 | 39.394 | 99 | 57 | 1 | 73 | 171 | 4 | 99 | 3.71e-12 | 67.8 |
MS.gene64132.t1 | AT4G39150 | 39.394 | 99 | 57 | 1 | 73 | 171 | 4 | 99 | 3.71e-12 | 67.8 |
MS.gene64132.t1 | AT4G28480 | 45.714 | 70 | 37 | 1 | 75 | 143 | 4 | 73 | 4.53e-12 | 67.8 |
MS.gene64132.t1 | AT5G16650 | 43.284 | 67 | 38 | 0 | 71 | 137 | 7 | 73 | 6.27e-12 | 63.2 |
MS.gene64132.t1 | AT5G01390 | 44.286 | 70 | 38 | 1 | 75 | 143 | 4 | 73 | 9.03e-12 | 65.5 |
MS.gene64132.t1 | AT3G08970 | 50.820 | 61 | 29 | 1 | 77 | 137 | 29 | 88 | 9.06e-12 | 67.8 |
MS.gene64132.t1 | AT3G08970 | 50.820 | 61 | 29 | 1 | 77 | 137 | 29 | 88 | 9.06e-12 | 67.8 |
MS.gene64132.t1 | AT5G01390 | 44.286 | 70 | 38 | 1 | 75 | 143 | 4 | 73 | 9.25e-12 | 65.1 |
MS.gene64132.t1 | AT1G76700 | 47.692 | 65 | 34 | 0 | 73 | 137 | 4 | 68 | 1.21e-11 | 66.6 |
MS.gene64132.t1 | AT5G01390 | 44.286 | 70 | 38 | 1 | 75 | 143 | 4 | 73 | 1.33e-11 | 65.5 |
MS.gene64132.t1 | AT5G06910 | 33.613 | 119 | 67 | 2 | 71 | 189 | 25 | 131 | 1.34e-11 | 65.5 |
MS.gene64132.t1 | AT5G16650 | 43.284 | 67 | 38 | 0 | 71 | 137 | 7 | 73 | 1.60e-11 | 63.2 |
MS.gene64132.t1 | AT2G41000 | 41.573 | 89 | 40 | 2 | 75 | 151 | 3 | 91 | 2.46e-11 | 63.2 |
MS.gene64132.t1 | AT4G13830 | 31.579 | 133 | 66 | 3 | 71 | 199 | 62 | 173 | 2.78e-11 | 62.8 |
MS.gene64132.t1 | AT1G77020 | 45.455 | 66 | 36 | 0 | 73 | 138 | 4 | 69 | 7.46e-11 | 63.9 |
Find 105 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTGTCTTGTGGAGGATC+TGG | 0.259419 | 5.1:-49887878 | MS.gene64132:CDS |
GTTGAGGTGCCTACTTTATC+AGG | 0.261637 | 5.1:-49884245 | MS.gene64132:CDS |
GATGAGATGAGAAGAATTTC+CGG | 0.273754 | 5.1:+49892609 | None:intergenic |
AAAAGAGGATTATCTAATTC+CGG | 0.288993 | 5.1:-49892456 | MS.gene64132:CDS |
GTTCAATATCTGAAGGAAAT+TGG | 0.300864 | 5.1:-49881819 | MS.gene64132:intron |
GAACTGGCAGGCGTGGATTC+AGG | 0.319750 | 5.1:-49887445 | MS.gene64132:intron |
CCGCTGAGCAAAACTATTAT+CGG | 0.336092 | 5.1:-49892111 | MS.gene64132:CDS |
TGCTCACGGTTCAGAGAATA+TGG | 0.339296 | 5.1:-49889384 | MS.gene64132:CDS |
CGATATCTGAATGGAATTCC+CGG | 0.346301 | 5.1:+49892437 | None:intergenic |
CCAGCAGCATTCCCACCTTC+TGG | 0.357293 | 5.1:+49887406 | None:intergenic |
GGATTATTCTTATTTGCATC+TGG | 0.362373 | 5.1:+49889744 | None:intergenic |
GAGTTTATACATTAAAATAA+AGG | 0.366846 | 5.1:-49887365 | MS.gene64132:intron |
AGGATCTGGCCGCATTATTA+AGG | 0.367591 | 5.1:-49887986 | MS.gene64132:intron |
ATTTGCAAAGGAGGAAATAA+AGG | 0.370140 | 5.1:-49881851 | MS.gene64132:CDS |
TATCGTTATGTTTATGCTAC+AGG | 0.373126 | 5.1:-49892419 | MS.gene64132:intron |
TTCATGAAATTGTTTCGTTC+CGG | 0.380954 | 5.1:-49892628 | MS.gene64132:CDS |
AAAGAGGATTATCTAATTCC+GGG | 0.399771 | 5.1:-49892455 | MS.gene64132:CDS |
ATGAAACTGAAGAAAGAAAA+TGG | 0.400834 | 5.1:+49892663 | None:intergenic |
GTTTGTCTTGTGGAGGATCT+GGG | 0.403834 | 5.1:-49887877 | MS.gene64132:CDS |
GGTTCAGAGAATATGGAATA+TGG | 0.404928 | 5.1:-49889377 | MS.gene64132:CDS |
GTAATGCATGTTGATGTAAA+TGG | 0.411283 | 5.1:+49888015 | None:intergenic |
GGAGGATCTGGGGTTATTGA+AGG | 0.414748 | 5.1:-49887866 | MS.gene64132:CDS |
TGCATGATGGACAAACTGTT+CGG | 0.427134 | 5.1:+49888174 | None:intergenic |
TGAAATTTCCTCTTTGCTGA+TGG | 0.429325 | 5.1:+49889723 | None:intergenic |
CTAAATACTTGCAGCTGTCC+TGG | 0.432436 | 5.1:+49883167 | None:intergenic |
CAAAACTATTATCGGATACT+TGG | 0.447598 | 5.1:-49892103 | MS.gene64132:CDS |
AAGTAATTTACCTGCTGGTA+TGG | 0.451989 | 5.1:+49887823 | None:intergenic |
GACAGTTCCAGCATAGACTT+TGG | 0.464267 | 5.1:+49880981 | None:intergenic |
GGACAGCTGCAAGTATTTAG+AGG | 0.469086 | 5.1:-49883164 | MS.gene64132:CDS |
TGCATTACTTGTAAAGGATC+TGG | 0.469733 | 5.1:-49888000 | MS.gene64132:CDS |
GCATGATGGACAAACTGTTC+GGG | 0.472832 | 5.1:+49888175 | None:intergenic |
TGTCCATCATGCAGGGGTGC+CGG | 0.485566 | 5.1:-49888164 | MS.gene64132:CDS |
TGTACAAAATACCCATGCTT+TGG | 0.488581 | 5.1:+49883031 | None:intergenic |
TGTCCTGGTTGAACACCCTT+AGG | 0.491247 | 5.1:+49883182 | None:intergenic |
GAACAGTTTGTCCATCATGC+AGG | 0.491550 | 5.1:-49888172 | MS.gene64132:CDS |
CATTCCCACCTTCTGGCACA+TGG | 0.494951 | 5.1:+49887413 | None:intergenic |
CGACCGGCACCCCTGCATGA+TGG | 0.497960 | 5.1:+49888161 | None:intergenic |
GCACCATCCCTCGAAAAGAC+TGG | 0.499605 | 5.1:+49886152 | None:intergenic |
ATGATCTACCTTGTCATACT+CGG | 0.503787 | 5.1:+49889523 | None:intergenic |
GGTGGGAATGCTGCTGGAAG+TGG | 0.504234 | 5.1:-49887400 | MS.gene64132:CDS |
GAGGATCTGGGGTTATTGAA+GGG | 0.505403 | 5.1:-49887865 | MS.gene64132:CDS |
TGTTGCTGAAAATGCTAGTC+AGG | 0.514746 | 5.1:-49892080 | MS.gene64132:CDS |
CTGTATCAAACCAGATGGAT+GGG | 0.514997 | 5.1:-49888216 | MS.gene64132:intron |
TCAACATGCATTACTTGTAA+AGG | 0.518023 | 5.1:-49888006 | MS.gene64132:CDS |
TATTCTTATTTGCATCTGGA+TGG | 0.518251 | 5.1:+49889748 | None:intergenic |
CTCGTTGAAATAGGTGGATG+AGG | 0.521698 | 5.1:-49886177 | MS.gene64132:intron |
GACGGCTCCAAAGTCTATGC+TGG | 0.523998 | 5.1:-49880988 | MS.gene64132:CDS |
GTCTATGCTGGAACTGTCCA+TGG | 0.526700 | 5.1:-49880976 | MS.gene64132:intron |
GGTTATTGAAGGGATTAAAG+AGG | 0.530183 | 5.1:-49887855 | MS.gene64132:CDS |
TAAACATAACGATATCTGAA+TGG | 0.535138 | 5.1:+49892428 | None:intergenic |
TTACTCACCACAATTATCAC+AGG | 0.536497 | 5.1:+49889000 | None:intergenic |
TTCCAATGCACTTACTCGAC+CGG | 0.538074 | 5.1:+49888145 | None:intergenic |
TATGATTCCTCAGATACCTA+AGG | 0.539447 | 5.1:-49883198 | MS.gene64132:intron |
GCTGTATCAAACCAGATGGA+TGG | 0.542484 | 5.1:-49888217 | MS.gene64132:intron |
CCAGAAGGTGGGAATGCTGC+TGG | 0.543160 | 5.1:-49887406 | MS.gene64132:CDS |
AACAGTTTGTCCATCATGCA+GGG | 0.544730 | 5.1:-49888171 | MS.gene64132:CDS |
ACAATCCATGTGCCAGAAGG+TGG | 0.547870 | 5.1:-49887418 | MS.gene64132:CDS |
GCTGGAAGTGGTGGTCGACA+TGG | 0.548526 | 5.1:-49887388 | MS.gene64132:CDS |
ACTTGAAGAATTTGCAAAGG+AGG | 0.552069 | 5.1:-49881860 | MS.gene64132:CDS |
TGCAAAGGAGGAAATAAAGG+AGG | 0.553510 | 5.1:-49881848 | MS.gene64132:CDS |
CAATTTAAGATGCGTGCTCA+CGG | 0.554083 | 5.1:-49889398 | MS.gene64132:intron |
CTGCAAGTATTTAGAGGCAA+AGG | 0.556105 | 5.1:-49883158 | MS.gene64132:intron |
TCCTCCCGCGGCTTCTGAGA+AGG | 0.558759 | 5.1:+49889057 | None:intergenic |
ATCAGGGAAGATGCAAGTAA+AGG | 0.559877 | 5.1:-49884228 | MS.gene64132:intron |
AGATGTAAGAGAAGCTTATG+AGG | 0.560366 | 5.1:-49889700 | MS.gene64132:intron |
TATTCTTGGTGGCAAAGTTG+AGG | 0.566271 | 5.1:-49884261 | MS.gene64132:CDS |
TGATGCAGAAAGATTTAGAA+AGG | 0.567593 | 5.1:-49889342 | MS.gene64132:CDS |
TCTATGGCAGTTGGAGCAAG+TGG | 0.571642 | 5.1:-49879337 | MS.gene64132:intron |
GGGAATGCTGCTGGAAGTGG+TGG | 0.574072 | 5.1:-49887397 | MS.gene64132:CDS |
GTTAAAGTTACCATACCAGC+AGG | 0.579997 | 5.1:-49887833 | MS.gene64132:intron |
GGAAATAGTTCAATATCTGA+AGG | 0.581568 | 5.1:-49881826 | MS.gene64132:CDS |
TTGAGGTGCCTACTTTATCA+GGG | 0.581583 | 5.1:-49884244 | MS.gene64132:CDS |
ATGCAGGACTGCCAAAGCAT+GGG | 0.587800 | 5.1:-49883042 | MS.gene64132:intron |
ATGATTCCTCAGATACCTAA+GGG | 0.589375 | 5.1:-49883197 | MS.gene64132:intron |
ATCTAATATTAGCTTTACAC+AGG | 0.589607 | 5.1:-49886114 | MS.gene64132:intron |
AGAATAATCCATCAGCAAAG+AGG | 0.589754 | 5.1:-49889731 | MS.gene64132:CDS |
ATACCTAAGGGTGTTCAACC+AGG | 0.589906 | 5.1:-49883185 | MS.gene64132:CDS |
CTGGAAGTGGTGGTCGACAT+GGG | 0.590011 | 5.1:-49887387 | MS.gene64132:CDS |
GCAAAGGAGGAAATAAAGGA+GGG | 0.593191 | 5.1:-49881847 | MS.gene64132:CDS |
TGCATCTTCCCTGATAAAGT+AGG | 0.608731 | 5.1:+49884236 | None:intergenic |
TATACTTGAAGAATTTGCAA+AGG | 0.610199 | 5.1:-49881863 | MS.gene64132:CDS |
TTTGTCTTGTGGAGGATCTG+GGG | 0.611758 | 5.1:-49887876 | MS.gene64132:CDS |
CATACTTCGTGAAAGCAACA+AGG | 0.615453 | 5.1:+49892583 | None:intergenic |
TAGTCAGGATGAGATAAAGA+AGG | 0.617776 | 5.1:-49892065 | MS.gene64132:CDS |
GATGCAGGACTGCCAAAGCA+TGG | 0.619189 | 5.1:-49883043 | MS.gene64132:intron |
CTTACCTTCTCAGAAGCCGC+GGG | 0.621489 | 5.1:-49889061 | MS.gene64132:CDS |
CAATCCATGTGCCAGAAGGT+GGG | 0.625311 | 5.1:-49887417 | MS.gene64132:CDS |
ACTTACCTTCTCAGAAGCCG+CGG | 0.625415 | 5.1:-49889062 | MS.gene64132:CDS |
GAAACAATTTCATGAACGAG+AGG | 0.626240 | 5.1:+49892635 | None:intergenic |
GATAAAGAAGGCATTTCACT+CGG | 0.628750 | 5.1:-49892053 | MS.gene64132:intron |
ACCTTCTCAGAAGCCGCGGG+AGG | 0.629055 | 5.1:-49889058 | MS.gene64132:CDS |
GATACAATCCATGTGCCAGA+AGG | 0.629876 | 5.1:-49887421 | MS.gene64132:CDS |
TGCATGTTGATGTAAATGGC+GGG | 0.630577 | 5.1:+49888019 | None:intergenic |
GCAAATTATTGAATACATGA+CGG | 0.633888 | 5.1:-49881006 | MS.gene64132:CDS |
TATGGAGGACCTTAATAATG+CGG | 0.634096 | 5.1:+49887977 | None:intergenic |
TGTATCAAACCAGATGGATG+GGG | 0.650704 | 5.1:-49888215 | MS.gene64132:intron |
TACTCACCACAATTATCACA+GGG | 0.652525 | 5.1:+49889001 | None:intergenic |
ATTTCATCAAGTATTCTCTG+AGG | 0.670357 | 5.1:-49889294 | MS.gene64132:intron |
GGATGGTGCAGATATCTATG+TGG | 0.673393 | 5.1:-49886138 | MS.gene64132:CDS |
ACAGTTTGTCCATCATGCAG+GGG | 0.682235 | 5.1:-49888170 | MS.gene64132:CDS |
AAAGAGGGCCGAGTATGACA+AGG | 0.689679 | 5.1:-49889531 | MS.gene64132:intron |
CCTACGTGGGAAACTTTACA+CGG | 0.690047 | 5.1:+49882984 | None:intergenic |
TCAGTTCTCATCAAATACAG+AGG | 0.704938 | 5.1:-49889173 | MS.gene64132:intron |
GCAGTTCCCTGTGATAATTG+TGG | 0.707059 | 5.1:-49889007 | MS.gene64132:intron |
ATGCATGTTGATGTAAATGG+CGG | 0.714930 | 5.1:+49888018 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 49879329 | 49892699 | 49879329 | ID=MS.gene64132 |
chr5.1 | mRNA | 49879329 | 49892699 | 49879329 | ID=MS.gene64132.t1;Parent=MS.gene64132 |
chr5.1 | exon | 49892588 | 49892699 | 49892588 | ID=MS.gene64132.t1.exon1;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49892588 | 49892699 | 49892588 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49892420 | 49892506 | 49892420 | ID=MS.gene64132.t1.exon2;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49892420 | 49892506 | 49892420 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49892054 | 49892145 | 49892054 | ID=MS.gene64132.t1.exon3;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49892054 | 49892145 | 49892054 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49889701 | 49889784 | 49889701 | ID=MS.gene64132.t1.exon4;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49889701 | 49889784 | 49889701 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49889532 | 49889570 | 49889532 | ID=MS.gene64132.t1.exon5;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49889532 | 49889570 | 49889532 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49889295 | 49889411 | 49889295 | ID=MS.gene64132.t1.exon6;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49889295 | 49889411 | 49889295 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49889174 | 49889215 | 49889174 | ID=MS.gene64132.t1.exon7;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49889174 | 49889215 | 49889174 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49889008 | 49889095 | 49889008 | ID=MS.gene64132.t1.exon8;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49889008 | 49889095 | 49889008 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49888160 | 49888224 | 49888160 | ID=MS.gene64132.t1.exon9;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49888160 | 49888224 | 49888160 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49887987 | 49888049 | 49887987 | ID=MS.gene64132.t1.exon10;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49887987 | 49888049 | 49887987 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49887834 | 49887906 | 49887834 | ID=MS.gene64132.t1.exon11;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49887834 | 49887906 | 49887834 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49887366 | 49887457 | 49887366 | ID=MS.gene64132.t1.exon12;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49887366 | 49887457 | 49887366 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49886115 | 49886186 | 49886115 | ID=MS.gene64132.t1.exon13;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49886115 | 49886186 | 49886115 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49884229 | 49884285 | 49884229 | ID=MS.gene64132.t1.exon14;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49884229 | 49884285 | 49884229 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49883159 | 49883207 | 49883159 | ID=MS.gene64132.t1.exon15;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49883159 | 49883207 | 49883159 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49882989 | 49883058 | 49882989 | ID=MS.gene64132.t1.exon16;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49882989 | 49883058 | 49882989 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49881820 | 49881909 | 49881820 | ID=MS.gene64132.t1.exon17;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49881820 | 49881909 | 49881820 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49880977 | 49881034 | 49880977 | ID=MS.gene64132.t1.exon18;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49880977 | 49881034 | 49880977 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
chr5.1 | exon | 49879329 | 49879349 | 49879329 | ID=MS.gene64132.t1.exon19;Parent=MS.gene64132.t1 |
chr5.1 | CDS | 49879329 | 49879349 | 49879329 | ID=cds.MS.gene64132.t1;Parent=MS.gene64132.t1 |
Gene Sequence |
Protein sequence |